AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041122

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041122.t1 MTR_5g017850 97.853 326 7 0 1 326 1 326 0.0 657
MS.gene041122.t1 MTR_5g017860 92.331 326 25 0 1 326 1 326 0.0 626
MS.gene041122.t1 MTR_4g125940 52.322 323 143 5 9 326 13 329 3.73e-109 321
MS.gene041122.t1 MTR_7g093370 51.534 326 153 4 5 326 47 371 1.64e-108 321
MS.gene041122.t1 MTR_3g094650 51.713 321 143 4 11 326 9 322 1.85e-108 319
MS.gene041122.t1 MTR_2g084080 51.411 319 146 3 9 326 7 317 2.22e-108 318
MS.gene041122.t1 MTR_2g084110 51.212 330 144 5 1 326 1 317 5.72e-108 317
MS.gene041122.t1 MTR_1g054205 51.562 320 149 5 11 326 9 326 9.29e-108 317
MS.gene041122.t1 MTR_2g084010 52.848 316 136 5 16 326 11 318 1.22e-105 311
MS.gene041122.t1 MTR_2g029815 51.307 306 143 4 25 326 27 330 1.62e-105 312
MS.gene041122.t1 MTR_2g084020 51.360 331 143 6 1 326 1 318 1.77e-105 311
MS.gene041122.t1 MTR_5g074970 49.536 323 152 3 8 326 11 326 9.54e-104 307
MS.gene041122.t1 MTR_2g084090 49.216 319 151 3 12 326 7 318 2.46e-103 306
MS.gene041122.t1 MTR_7g072480 49.383 324 151 5 4 326 5 316 2.54e-103 306
MS.gene041122.t1 MTR_4g083710 48.182 330 161 5 1 326 1 324 7.47e-103 305
MS.gene041122.t1 MTR_2g029560 49.530 319 156 4 11 326 9 325 2.03e-102 304
MS.gene041122.t1 MTR_2g029820 50.000 306 147 4 25 326 27 330 2.28e-102 305
MS.gene041122.t1 MTR_5g021060 51.987 302 142 3 27 326 30 330 1.16e-101 302
MS.gene041122.t1 MTR_5g083860 47.866 328 160 4 3 326 5 325 2.07e-101 301
MS.gene041122.t1 MTR_2g040000 51.325 302 138 4 31 326 33 331 2.23e-101 301
MS.gene041122.t1 MTR_2g029730 49.843 319 155 4 11 326 10 326 2.53e-101 301
MS.gene041122.t1 MTR_2g029800 50.000 306 147 4 25 326 27 330 4.11e-101 301
MS.gene041122.t1 MTR_2g029830 49.346 306 149 4 25 326 26 329 6.35e-101 301
MS.gene041122.t1 MTR_2g028980 48.024 329 163 5 5 326 3 330 1.49e-99 297
MS.gene041122.t1 MTR_3g094670 50.157 319 147 4 13 326 11 322 3.48e-99 295
MS.gene041122.t1 MTR_7g072510 48.287 321 154 4 7 326 3 312 5.88e-99 294
MS.gene041122.t1 MTR_3g466200 46.875 320 160 3 10 326 8 320 8.60e-99 294
MS.gene041122.t1 MTR_2g084000 48.598 321 151 5 12 326 7 319 1.07e-98 294
MS.gene041122.t1 MTR_2g029860 47.649 319 159 4 15 326 13 330 2.99e-98 294
MS.gene041122.t1 MTR_4g074995 48.113 318 144 5 12 326 9 308 7.59e-98 291
MS.gene041122.t1 MTR_8g076820 49.524 315 154 4 14 326 19 330 1.80e-97 291
MS.gene041122.t1 MTR_3g072190 47.826 322 155 4 10 326 5 318 2.04e-97 291
MS.gene041122.t1 MTR_4g122640 50.000 304 147 4 25 326 36 336 3.27e-97 291
MS.gene041122.t1 MTR_2g029910 48.039 306 154 3 25 326 28 332 3.41e-97 291
MS.gene041122.t1 MTR_4g125940 53.986 276 119 4 56 326 2 274 1.12e-96 287
MS.gene041122.t1 MTR_4g029180 48.667 300 143 4 30 326 30 321 1.43e-96 288
MS.gene041122.t1 MTR_2g029850 49.180 305 151 3 25 326 27 330 1.74e-96 290
MS.gene041122.t1 MTR_2g029750 49.673 306 148 4 25 326 27 330 4.48e-96 288
MS.gene041122.t1 MTR_4g029170 45.897 329 164 5 4 326 1 321 4.78e-96 287
MS.gene041122.t1 MTR_3g094630 49.216 319 150 4 13 326 11 322 7.02e-95 284
MS.gene041122.t1 MTR_1g022970 50.667 300 144 3 30 326 49 347 4.42e-93 281
MS.gene041122.t1 MTR_4g029200 48.185 303 148 3 25 326 44 338 6.89e-93 280
MS.gene041122.t1 MTR_1g115900 44.688 320 162 5 14 326 10 321 1.19e-92 279
MS.gene041122.t1 MTR_2g088770 44.654 318 170 5 11 326 12 325 1.38e-92 278
MS.gene041122.t1 MTR_4g046713 42.813 327 185 2 1 326 1 326 4.51e-92 277
MS.gene041122.t1 MTR_2g029740 47.386 306 155 4 25 326 27 330 4.67e-92 278
MS.gene041122.t1 MTR_4g074990 45.706 326 153 6 4 326 1 305 3.64e-91 274
MS.gene041122.t1 MTR_3g466180 47.516 322 160 3 6 326 10 323 1.70e-90 273
MS.gene041122.t1 MTR_5g074740 49.074 324 148 10 9 326 9 321 2.72e-89 270
MS.gene041122.t1 MTR_5g074760 48.765 324 149 10 9 326 9 321 3.42e-89 270
MS.gene041122.t1 MTR_4g029190 47.267 311 154 4 19 326 37 340 7.00e-89 270
MS.gene041122.t1 MTR_5g049280 45.603 307 160 5 26 326 32 337 1.77e-88 268
MS.gene041122.t1 MTR_5g074860 47.147 333 159 9 1 325 1 324 2.49e-88 268
MS.gene041122.t1 MTR_5g074710 48.297 323 150 11 10 326 10 321 7.38e-88 266
MS.gene041122.t1 MTR_7g026990 48.148 297 144 4 31 326 35 322 8.69e-88 266
MS.gene041122.t1 MTR_1g101830 40.798 326 189 3 1 326 1 322 1.17e-87 266
MS.gene041122.t1 MTR_2g008710 43.939 330 176 4 1 326 1 325 2.86e-86 263
MS.gene041122.t1 MTR_5g014100 46.278 309 154 5 27 326 26 331 1.11e-85 261
MS.gene041122.t1 MTR_4g133800 43.581 296 158 4 32 326 46 333 2.43e-84 258
MS.gene041122.t1 MTR_3g092990 43.396 318 177 3 11 326 10 326 4.33e-84 257
MS.gene041122.t1 MTR_4g030890 46.205 303 158 3 25 326 98 396 4.98e-84 259
MS.gene041122.t1 MTR_0155s0040 43.046 302 161 4 25 326 25 315 1.12e-82 253
MS.gene041122.t1 MTR_2g029830 49.612 258 124 4 73 326 6 261 2.04e-82 251
MS.gene041122.t1 MTR_7g086820 44.118 306 164 4 21 326 14 312 2.09e-82 252
MS.gene041122.t1 MTR_5g022870 42.812 320 175 5 9 326 3 316 2.38e-82 252
MS.gene041122.t1 MTR_4g114210 42.633 319 173 4 13 326 7 320 3.31e-82 252
MS.gene041122.t1 MTR_6g027440 42.453 318 177 4 9 326 3 314 4.95e-82 251
MS.gene041122.t1 MTR_8g075100 43.667 300 163 4 27 326 26 319 1.39e-81 250
MS.gene041122.t1 MTR_4g031140 42.284 324 180 5 5 326 6 324 4.61e-81 250
MS.gene041122.t1 MTR_1g025980 43.533 317 173 4 9 325 7 317 7.30e-81 248
MS.gene041122.t1 MTR_4g074980 43.789 322 148 7 7 326 4 294 1.05e-80 247
MS.gene041122.t1 MTR_7g107520 43.533 317 171 6 11 326 11 320 2.25e-80 247
MS.gene041122.t1 MTR_4g074980 48.263 259 124 5 4 258 1 253 1.05e-79 243
MS.gene041122.t1 MTR_1g077000 39.394 330 181 5 5 326 9 327 5.78e-79 244
MS.gene041122.t1 MTR_2g437770 42.857 301 162 4 27 326 50 341 6.56e-79 244
MS.gene041122.t1 MTR_3g467600 44.172 326 168 7 7 326 7 324 1.14e-78 243
MS.gene041122.t1 MTR_6g043280 44.013 309 159 6 21 326 35 332 2.00e-78 243
MS.gene041122.t1 MTR_3g072190 48.450 258 124 3 70 326 2 251 7.72e-77 236
MS.gene041122.t1 MTR_2g008160 42.020 307 168 5 25 326 22 323 9.86e-77 238
MS.gene041122.t1 MTR_1g009750 40.498 321 185 4 10 326 10 328 9.77e-76 236
MS.gene041122.t1 MTR_6g043240 43.182 308 161 5 21 326 36 331 4.87e-74 232
MS.gene041122.t1 MTR_1g090760 39.938 323 187 6 10 326 9 330 5.25e-74 231
MS.gene041122.t1 MTR_1g086320 39.697 330 195 4 1 326 4 333 9.14e-74 231
MS.gene041122.t1 MTR_1g038680 42.000 300 170 4 31 326 33 332 5.00e-73 229
MS.gene041122.t1 MTR_3g092990 41.195 318 173 4 11 326 10 315 3.35e-72 226
MS.gene041122.t1 MTR_7g029030 40.523 306 168 5 26 326 24 320 5.69e-72 226
MS.gene041122.t1 MTR_1g086490 38.757 338 194 5 1 326 4 340 5.14e-71 224
MS.gene041122.t1 MTR_7g086870 40.667 300 168 4 27 326 22 311 1.38e-70 222
MS.gene041122.t1 MTR_5g074860 43.114 334 132 11 1 325 1 285 2.07e-69 218
MS.gene041122.t1 MTR_4g087965 37.353 340 192 6 4 322 3 342 3.15e-69 219
MS.gene041122.t1 MTR_2g008730 40.181 331 163 6 1 326 1 301 9.68e-69 217
MS.gene041122.t1 MTR_5g016010 35.385 325 198 6 11 325 6 328 3.44e-66 211
MS.gene041122.t1 MTR_2g099175 40.196 306 173 5 26 326 35 335 3.71e-66 211
MS.gene041122.t1 MTR_2g067440 37.462 331 175 7 25 325 58 386 4.12e-66 213
MS.gene041122.t1 MTR_3g105790 38.462 325 192 5 5 326 3 322 3.73e-65 208
MS.gene041122.t1 MTR_8g062780 36.923 325 201 4 4 326 2 324 3.94e-65 208
MS.gene041122.t1 MTR_4g127670 39.542 306 175 6 26 326 23 323 4.79e-65 208
MS.gene041122.t1 MTR_6g043460 39.610 308 175 4 21 326 30 328 1.87e-64 207
MS.gene041122.t1 MTR_1g009750 36.991 319 182 5 10 326 10 311 7.56e-63 202
MS.gene041122.t1 MTR_2g078610 36.061 330 178 6 25 322 74 402 3.14e-62 203
MS.gene041122.t1 MTR_2g077990 37.425 334 168 9 25 322 74 402 3.77e-62 203
MS.gene041122.t1 MTR_2g008160 37.459 307 147 5 25 326 22 288 8.56e-61 196
MS.gene041122.t1 MTR_4g095450 37.224 317 187 6 10 322 12 320 8.83e-61 197
MS.gene041122.t1 MTR_5g033470 36.859 312 180 6 26 326 72 377 5.79e-60 196
MS.gene041122.t1 MTR_0286s0010 33.951 324 201 5 10 326 17 334 1.07e-58 192
MS.gene041122.t1 MTR_6g008075 33.951 324 201 5 10 326 17 334 1.07e-58 192
MS.gene041122.t1 MTR_4g132490 35.314 303 191 4 26 326 28 327 3.57e-58 190
MS.gene041122.t1 MTR_2g078280 35.737 319 172 6 25 311 74 391 2.75e-56 187
MS.gene041122.t1 MTR_0147s0010 34.062 320 175 6 27 325 77 381 4.85e-55 184
MS.gene041122.t1 MTR_2g008160 47.904 167 84 2 25 191 22 185 1.52e-51 169
MS.gene041122.t1 MTR_2g067450 35.948 306 186 7 25 325 9 309 1.55e-51 173
MS.gene041122.t1 MTR_1g066710 32.680 306 195 5 25 326 25 323 2.25e-49 167
MS.gene041122.t1 MTR_1g066640 33.442 308 190 5 25 326 25 323 3.37e-47 162
MS.gene041122.t1 MTR_4g132110 32.343 303 196 4 27 326 32 328 1.46e-46 160
MS.gene041122.t1 MTR_1g066380 32.459 305 197 4 25 326 25 323 1.59e-46 160
MS.gene041122.t1 MTR_4g132110 32.143 308 195 5 27 326 32 333 3.98e-45 157
MS.gene041122.t1 MTR_1g066680 33.657 309 187 6 25 326 25 322 4.06e-45 156
MS.gene041122.t1 MTR_7g072490 41.277 235 75 3 73 306 2 174 8.27e-45 152
MS.gene041122.t1 MTR_3g105790 42.194 237 131 5 94 326 12 246 1.04e-44 153
MS.gene041122.t1 MTR_5g074700 42.857 231 107 8 100 326 5 214 1.23e-44 152
MS.gene041122.t1 MTR_3g072260 59.292 113 46 0 26 138 25 137 1.44e-41 141
MS.gene041122.t1 MTR_3g072210 41.361 191 101 5 139 326 56 238 3.53e-37 133
MS.gene041122.t1 MTR_2g029880 40.206 194 100 5 137 326 7 188 1.31e-36 131
MS.gene041122.t1 MTR_1g066380 31.660 259 168 4 71 326 3 255 4.36e-34 125
MS.gene041122.t1 MTR_2g077980 31.673 281 143 10 89 326 11 285 2.63e-29 114
MS.gene041122.t1 MTR_7g086790 34.392 189 102 5 74 262 17 183 2.88e-26 103
MS.gene041122.t1 MTR_2g078560 28.829 222 127 4 132 322 95 316 3.54e-23 98.2
MS.gene041122.t1 MTR_1g089005 42.520 127 63 3 16 133 1 126 1.54e-21 89.7
MS.gene041122.t1 MTR_4g114220 54.444 90 31 2 47 136 23 102 1.88e-21 89.0
MS.gene041122.t1 MTR_5g058120 35.366 164 94 3 161 324 6 157 3.95e-21 91.3
MS.gene041122.t1 MTR_6g048160 59.155 71 25 2 66 136 22 88 3.18e-20 84.0
MS.gene041122.t1 MTR_3g462850 34.507 142 87 4 190 326 9 149 2.73e-18 80.9
MS.gene041122.t1 MTR_2g029930 44.118 102 29 3 25 112 17 104 8.71e-18 78.2
MS.gene041122.t1 MTR_7g086810 35.294 119 51 1 27 145 6 98 2.19e-15 74.7
MS.gene041122.t1 MTR_4g031040 32.184 174 72 5 88 260 3 131 1.04e-14 70.5
MS.gene041122.t1 MTR_5g074770 47.191 89 44 3 239 325 21 108 5.07e-14 67.8
MS.gene041122.t1 MTR_1g098320 42.105 76 44 0 251 326 49 124 7.20e-14 68.2
MS.gene041122.t1 MTR_7g107500 41.667 84 48 1 243 326 15 97 9.78e-14 66.6
MS.gene041122.t1 MTR_7g086785 45.205 73 39 1 73 145 4 75 4.02e-13 66.2
MS.gene041122.t1 MTR_4g012865 38.235 68 42 0 27 94 77 144 1.40e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041122.t1 AT1G49570 63.036 303 109 2 23 322 44 346 2.49e-134 385
MS.gene041122.t1 AT5G19890 54.434 327 139 4 4 326 7 327 4.01e-117 341
MS.gene041122.t1 AT5G06730 53.770 305 137 3 25 326 31 334 1.34e-112 331
MS.gene041122.t1 AT5G06720 50.155 323 153 4 11 326 12 333 8.99e-107 315
MS.gene041122.t1 AT4G36430 49.175 303 151 3 26 326 29 330 1.72e-103 306
MS.gene041122.t1 AT2G18150 46.061 330 164 4 10 326 8 336 5.08e-102 303
MS.gene041122.t1 AT2G38390 49.211 317 154 5 15 326 19 333 4.38e-100 298
MS.gene041122.t1 AT5G05340 47.231 307 153 3 22 326 25 324 1.69e-98 294
MS.gene041122.t1 AT1G44970 51.148 305 145 3 25 326 43 346 5.42e-98 293
MS.gene041122.t1 AT2G18140 48.344 302 153 3 27 326 35 335 6.21e-98 293
MS.gene041122.t1 AT3G32980 47.950 317 159 4 15 326 19 334 1.97e-95 287
MS.gene041122.t1 AT3G49120 46.749 323 166 4 9 326 14 335 9.63e-95 285
MS.gene041122.t1 AT1G14550 45.794 321 163 5 10 326 8 321 3.19e-94 283
MS.gene041122.t1 AT5G58400 44.880 332 170 4 1 326 1 325 8.59e-93 279
MS.gene041122.t1 AT3G49110 46.749 323 166 4 9 326 15 336 1.00e-92 280
MS.gene041122.t1 AT1G68850 45.062 324 168 7 11 326 14 335 1.86e-92 279
MS.gene041122.t1 AT2G38380 47.950 317 158 5 15 326 19 333 4.10e-92 278
MS.gene041122.t1 AT1G14540 46.203 316 158 5 16 326 7 315 2.54e-91 275
MS.gene041122.t1 AT4G08780 47.419 310 157 4 22 326 19 327 2.84e-91 276
MS.gene041122.t1 AT5G19880 46.809 329 167 6 4 326 3 329 3.97e-91 275
MS.gene041122.t1 AT4G16270 48.344 302 151 4 27 326 50 348 4.42e-91 276
MS.gene041122.t1 AT4G08770 47.742 310 156 4 22 326 19 327 1.55e-90 274
MS.gene041122.t1 AT3G03670 44.923 325 170 4 6 326 2 321 3.62e-90 272
MS.gene041122.t1 AT5G66390 44.073 329 173 5 8 326 6 333 3.65e-90 273
MS.gene041122.t1 AT5G15180 45.370 324 161 7 15 326 10 329 1.66e-89 271
MS.gene041122.t1 AT3G50990 45.201 323 171 4 9 326 20 341 3.93e-89 270
MS.gene041122.t1 AT1G05260 43.769 329 178 7 1 326 1 325 5.69e-89 270
MS.gene041122.t1 AT5G51890 41.304 322 186 2 5 326 4 322 9.02e-89 269
MS.gene041122.t1 AT3G01190 45.201 323 171 6 5 326 4 321 4.55e-88 267
MS.gene041122.t1 AT5G58390 46.082 319 162 3 11 326 5 316 6.69e-88 266
MS.gene041122.t1 AT4G11290 45.574 305 162 4 25 326 23 326 1.48e-87 266
MS.gene041122.t1 AT3G21770 44.667 300 162 4 25 322 27 324 3.46e-85 260
MS.gene041122.t1 AT2G35380 43.402 341 167 6 4 326 3 335 1.49e-84 258
MS.gene041122.t1 AT5G17820 41.745 321 177 4 6 326 3 313 1.17e-83 255
MS.gene041122.t1 AT5G64120 42.462 325 174 5 9 326 10 328 2.99e-83 255
MS.gene041122.t1 AT2G22420 43.614 321 172 6 8 326 6 319 1.80e-82 253
MS.gene041122.t1 AT5G17820 41.745 321 177 4 6 326 56 366 2.51e-82 254
MS.gene041122.t1 AT5G42180 41.195 318 182 3 8 325 4 316 4.78e-80 246
MS.gene041122.t1 AT4G25980 41.694 307 170 4 25 326 24 326 1.95e-79 245
MS.gene041122.t1 AT1G05240 42.761 297 162 6 30 322 29 321 1.14e-78 243
MS.gene041122.t1 AT1G05250 42.761 297 162 6 30 322 29 321 1.14e-78 243
MS.gene041122.t1 AT2G41480 42.154 325 176 7 8 326 10 328 1.41e-78 243
MS.gene041122.t1 AT5G39580 42.320 319 174 6 9 326 10 319 6.61e-77 238
MS.gene041122.t1 AT4G33420 41.503 306 168 4 21 326 31 325 2.27e-76 237
MS.gene041122.t1 AT4G26010 41.139 316 170 6 12 326 9 309 5.68e-76 236
MS.gene041122.t1 AT4G26010 41.139 316 170 6 12 326 37 337 7.45e-76 236
MS.gene041122.t1 AT4G33420 41.503 306 168 4 21 326 78 372 8.50e-76 237
MS.gene041122.t1 AT1G77100 41.231 325 175 7 9 326 4 319 3.83e-75 234
MS.gene041122.t1 AT4G33870 37.538 333 172 4 25 322 66 397 2.27e-74 234
MS.gene041122.t1 AT1G30870 41.254 303 167 4 27 326 51 345 2.78e-73 230
MS.gene041122.t1 AT1G71695 38.762 307 178 4 23 326 40 339 1.74e-72 228
MS.gene041122.t1 AT2G24800 42.997 307 164 5 25 326 29 329 7.53e-72 226
MS.gene041122.t1 AT3G49960 39.077 325 189 6 9 326 7 329 4.33e-71 224
MS.gene041122.t1 AT4G37530 41.100 309 177 4 22 326 22 329 1.06e-70 223
MS.gene041122.t1 AT2G18980 38.318 321 187 6 11 326 9 323 2.82e-70 221
MS.gene041122.t1 AT5G64100 40.397 302 169 5 28 326 38 331 4.11e-70 221
MS.gene041122.t1 AT5G67400 39.739 307 178 5 25 326 25 329 8.99e-70 220
MS.gene041122.t1 AT5G47000 36.842 323 193 5 10 326 13 330 1.25e-69 220
MS.gene041122.t1 AT3G28200 39.286 308 171 4 25 326 19 316 1.46e-69 219
MS.gene041122.t1 AT4G31760 40.248 323 179 7 11 326 11 326 1.66e-69 219
MS.gene041122.t1 AT5G64110 40.803 299 168 6 31 326 38 330 4.72e-69 219
MS.gene041122.t1 AT2G34060 37.273 330 191 5 10 323 14 343 1.25e-68 218
MS.gene041122.t1 AT4G17690 39.274 303 175 4 27 326 26 322 1.78e-68 217
MS.gene041122.t1 AT4G37520 39.542 306 180 4 25 326 25 329 4.51e-68 216
MS.gene041122.t1 AT5G14130 37.690 329 192 6 5 326 8 330 1.49e-67 215
MS.gene041122.t1 AT5G24070 40.132 304 170 6 28 326 39 335 3.90e-67 214
MS.gene041122.t1 AT5G14130 37.690 329 192 6 5 326 49 371 4.14e-67 215
MS.gene041122.t1 AT1G34510 38.365 318 180 6 10 326 7 309 1.29e-65 209
MS.gene041122.t1 AT2G39040 41.234 308 172 7 26 326 45 350 1.78e-65 210
MS.gene041122.t1 AT4G37520 38.889 306 179 5 25 326 25 326 2.75e-65 209
MS.gene041122.t1 AT2G43480 40.461 304 169 6 28 326 39 335 2.83e-65 209
MS.gene041122.t1 AT4G30170 36.570 309 185 6 23 326 23 325 3.53e-65 208
MS.gene041122.t1 AT5G40150 36.688 308 180 4 25 326 30 328 9.20e-63 202
MS.gene041122.t1 AT5G22410 36.503 326 195 8 4 324 5 323 3.16e-62 201
MS.gene041122.t1 AT4G37530 41.923 260 146 4 22 277 22 280 1.54e-59 192
MS.gene041122.t1 AT2G35380 43.254 252 121 5 89 326 4 247 1.93e-59 191
MS.gene041122.t1 AT1G24110 36.667 330 183 9 12 326 4 322 2.82e-56 186
MS.gene041122.t1 AT4G21960 33.663 303 192 4 27 326 31 327 2.41e-50 170
MS.gene041122.t1 AT2G37130 34.853 307 186 7 26 326 29 327 1.98e-49 168
MS.gene041122.t1 AT2G37130 34.983 303 183 7 30 326 2 296 2.74e-49 166
MS.gene041122.t1 AT4G25980 46.243 173 90 2 25 197 69 238 4.58e-49 166
MS.gene041122.t1 AT3G17070 32.673 303 200 4 27 326 38 339 2.32e-47 163
MS.gene041122.t1 AT5G39580 45.078 193 99 3 9 201 10 195 2.47e-47 159
MS.gene041122.t1 AT2G24800 44.509 173 89 3 25 195 29 196 1.08e-38 137
MS.gene041122.t1 AT3G17070 31.034 261 175 5 69 326 18 276 2.05e-32 122
MS.gene041122.t1 AT3G42570 36.607 112 58 3 56 165 20 120 1.46e-12 65.1

Find 62 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAGTAAAGGGCCATTT+TGG 0.134765 5.2:-9991093 MS.gene041122:intron
TGCAGTTTCCGTTGAGAAAA+TGG 0.188621 5.2:-9990390 MS.gene041122:CDS
TACTGCCAAGTTCATTTCTA+AGG 0.210923 5.2:-9990981 MS.gene041122:CDS
AGCTGATTCCGACTCCAATT+TGG 0.302493 5.2:-9990579 MS.gene041122:CDS
ACAATCAGACCAAGCTCTAT+TGG 0.304491 5.2:-9990480 MS.gene041122:CDS
GATGATACGGACACACTAAA+AGG 0.311071 5.2:-9991422 MS.gene041122:CDS
TGGTGTTCTTGCGGGACAAC+AGG 0.315941 5.2:-9990360 MS.gene041122:CDS
AGGATCCAACGGAGCCAAAT+TGG 0.341029 5.2:+9990565 None:intergenic
GGTCGCATTGGTGTTCTTGC+GGG 0.352206 5.2:-9990368 MS.gene041122:CDS
TTCTTTAATTTCAGAGTAAA+GGG 0.356179 5.2:-9991102 MS.gene041122:intron
GAGTCGGAATCAGCTTGATT+TGG 0.362486 5.2:+9990587 None:intergenic
TATACAGGTGCACACACCTT+TGG 0.364289 5.2:-9990719 MS.gene041122:intron
CGACTCCAATTTGGCTCCGT+TGG 0.365758 5.2:-9990570 MS.gene041122:CDS
CGGGACAACAGGGTCAAATA+AGG 0.380062 5.2:-9990349 MS.gene041122:CDS
CTTCTTTAATTTCAGAGTAA+AGG 0.385010 5.2:-9991103 MS.gene041122:intron
CCAAGAGGTACAGCCCAAAA+TGG 0.386408 5.2:+9991079 None:intergenic
CAATCAGACCAAGCTCTATT+GGG 0.411380 5.2:-9990479 MS.gene041122:CDS
ATACAGGTGCACACACCTTT+GGG 0.413975 5.2:-9990718 MS.gene041122:intron
AGCAGCAATCCTTGAGTCAT+TGG 0.423951 5.2:+9991617 None:intergenic
AAGCGATGGATCAGATTTAC+CGG 0.429554 5.2:+9990646 None:intergenic
TTCTAAGGGTCTTGAAAAGA+AGG 0.432738 5.2:-9990966 MS.gene041122:CDS
ATATCTAGGTTCCTAGTTAA+CGG 0.439967 5.2:+9990313 None:intergenic
TTACATTGACAAAACAATCA+TGG 0.440947 5.2:+9991574 None:intergenic
GCAGTTTCCGTTGAGAAAAT+GGG 0.456734 5.2:-9990389 MS.gene041122:CDS
CTATTCGACTTTGGTGGCTC+CGG 0.463524 5.2:-9990665 MS.gene041122:CDS
ATGTGATGGATCTGTGCTAC+TGG 0.464722 5.2:-9991444 MS.gene041122:CDS
TTCTAGAGGTTCAAAGGGTG+AGG 0.465492 5.2:+9991009 None:intergenic
AAATTGTAGGGCCGTTAACT+AGG 0.473141 5.2:-9990324 None:intergenic
TGACAATACAACTTCTGTAT+TGG 0.479450 5.2:-9990456 MS.gene041122:CDS
AAGCCAAGGCTATTCGACTT+TGG 0.481179 5.2:-9990674 MS.gene041122:CDS
CAAAACAATCATGGAAATGA+AGG 0.485397 5.2:+9991583 None:intergenic
ATGATACGGACACACTAAAA+GGG 0.487747 5.2:-9991421 MS.gene041122:CDS
GGGTCGCATTGGTGTTCTTG+CGG 0.499888 5.2:-9990369 MS.gene041122:CDS
TCAAATGTGTTCGTAGTGAC+AGG 0.502481 5.2:+9990545 None:intergenic
TACTAGAAATACAGCATCCC+TGG 0.511005 5.2:+9991274 None:intergenic
AAGGATGTAGCAGTGCTCTC+AGG 0.511701 5.2:-9990947 MS.gene041122:intron
CCAAGGCTATTCGACTTTGG+TGG 0.513944 5.2:-9990671 MS.gene041122:CDS
TGTGTTACATAGGGATGTGA+TGG 0.525846 5.2:-9991458 MS.gene041122:intron
AAGACCCTTAGAAATGAACT+TGG 0.532732 5.2:+9990976 None:intergenic
ACTGCCAAGTTCATTTCTAA+GGG 0.539607 5.2:-9990980 MS.gene041122:CDS
GTACCTCTTGGTCGTAGAGA+TGG 0.545618 5.2:-9991067 MS.gene041122:CDS
CCACCAAAGTCGAATAGCCT+TGG 0.547775 5.2:+9990671 None:intergenic
ATCTGTGCTACTGGATGATA+CGG 0.551787 5.2:-9991435 MS.gene041122:CDS
TATTGTCACCCAATAGAGCT+TGG 0.556737 5.2:+9990471 None:intergenic
ATATACTTACTCTAGCAGCC+AGG 0.559698 5.2:-9991292 MS.gene041122:CDS
GTTGAGAAAATGGGTCGCAT+TGG 0.578115 5.2:-9990380 MS.gene041122:CDS
TCTAGAGGTTCAAAGGGTGA+GGG 0.582918 5.2:+9991010 None:intergenic
AATGCTTTACATTCAAGCCA+AGG 0.586439 5.2:-9990688 MS.gene041122:CDS
CAGCTATAGCCAATGACTCA+AGG 0.590497 5.2:-9991626 MS.gene041122:CDS
TGGTTGACAATTATAGCAAG+TGG 0.590944 5.2:-9990436 MS.gene041122:CDS
TATAGTTGAGAGCACACAAG+TGG 0.607834 5.2:+9991711 None:intergenic
CAACGGAGCCAAATTGGAGT+CGG 0.611523 5.2:+9990571 None:intergenic
TATACTTACTCTAGCAGCCA+GGG 0.615867 5.2:-9991291 MS.gene041122:CDS
TCAGCACATGAGACTGTGGA+TGG 0.616095 5.2:+9991314 None:intergenic
AAAGCATTGCGCGAACCCAA+AGG 0.619184 5.2:+9990703 None:intergenic
GGTGTTCTTGCGGGACAACA+GGG 0.632444 5.2:-9990359 MS.gene041122:CDS
TTCGTAGTGACAGGATCCAA+CGG 0.634025 5.2:+9990554 None:intergenic
ATTTGCGTCGCTCTCACTCG+CGG 0.635311 5.2:+9991039 None:intergenic
TGATACGGACACACTAAAAG+GGG 0.644413 5.2:-9991420 MS.gene041122:CDS
AGAAGTGAAGAATCAAGCGA+TGG 0.646260 5.2:+9990632 None:intergenic
TATATCAGCACATGAGACTG+TGG 0.660979 5.2:+9991310 None:intergenic
GTGCCATCTCTACGACCAAG+AGG 0.689151 5.2:+9991064 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGCTATTTATATACT+CGG - chr5.2:9990575-9990594 MS.gene041122:CDS 15.0%
!! CCTAATAAAAATTCAATAAG+AGG - chr5.2:9990713-9990732 MS.gene041122:CDS 20.0%
!! TAACTTTATGTATACAAGAA+AGG + chr5.2:9991313-9991332 None:intergenic 20.0%
!! TCAAATAAGGAAAAATTGTA+GGG - chr5.2:9991760-9991779 MS.gene041122:CDS 20.0%
!!! AAATCTCTAAAAAACAGAAT+AGG + chr5.2:9991686-9991705 None:intergenic 20.0%
!!! AAGAAGTTCTGATTAATAAT+TGG + chr5.2:9990979-9990998 None:intergenic 20.0%
!!! ATTTCATTTTTGTGTTACAT+AGG - chr5.2:9990628-9990647 MS.gene041122:CDS 20.0%
!!! CCTCTTATTGAATTTTTATT+AGG + chr5.2:9990716-9990735 None:intergenic 20.0%
!!! TACTATATGATAATGTTTCT+GGG - chr5.2:9990895-9990914 MS.gene041122:intron 20.0%
!!! TTAACAATTTTGTTCAGATT+TGG + chr5.2:9990436-9990455 None:intergenic 20.0%
!!! TTACTATATGATAATGTTTC+TGG - chr5.2:9990894-9990913 MS.gene041122:intron 20.0%
!!! TTCTTTAATTTCAGAGTAAA+GGG - chr5.2:9990994-9991013 MS.gene041122:CDS 20.0%
!!! TTTCATTTTTGTGTTACATA+GGG - chr5.2:9990629-9990648 MS.gene041122:CDS 20.0%
! GTCAAATAAGGAAAAATTGT+AGG - chr5.2:9991759-9991778 MS.gene041122:CDS 25.0%
! TTAATTATTTGGAGACTACT+TGG - chr5.2:9990857-9990876 MS.gene041122:intron 25.0%
! TTACATTGACAAAACAATCA+TGG + chr5.2:9990525-9990544 None:intergenic 25.0%
! TTCTAACTCTAATGATCATA+AGG - chr5.2:9991286-9991305 MS.gene041122:CDS 25.0%
!! ACTATATGATAATGTTTCTG+GGG - chr5.2:9990896-9990915 MS.gene041122:intron 25.0%
!! CTTCTTTAATTTCAGAGTAA+AGG - chr5.2:9990993-9991012 MS.gene041122:CDS 25.0%
!!! AAAAATGTTTTGAGCAATTC+TGG - chr5.2:9991587-9991606 MS.gene041122:CDS 25.0%
!!! AAAATGTTTTGAGCAATTCT+GGG - chr5.2:9991588-9991607 MS.gene041122:CDS 25.0%
!!! TTATGTTATCGTCATTTTCA+AGG - chr5.2:9991254-9991273 MS.gene041122:intron 25.0%
CAAAACAATCATGGAAATGA+AGG + chr5.2:9990516-9990535 None:intergenic 30.0%
GAACTCGCTGTTTAATTATT+TGG - chr5.2:9990846-9990865 MS.gene041122:intron 30.0%
GACGATAACATAATTCGAAT+AGG + chr5.2:9991247-9991266 None:intergenic 30.0%
GTAGTCAATACACATGAAAT+TGG + chr5.2:9991345-9991364 None:intergenic 30.0%
TGACAATACAACTTCTGTAT+TGG - chr5.2:9991640-9991659 MS.gene041122:CDS 30.0%
!! AATGTTTTCTAGAGGTTCAA+AGG + chr5.2:9991096-9991115 None:intergenic 30.0%
!! ATGTTTTCTAGAGGTTCAAA+GGG + chr5.2:9991095-9991114 None:intergenic 30.0%
AAGACCCTTAGAAATGAACT+TGG + chr5.2:9991123-9991142 None:intergenic 35.0%
AATGCTTTACATTCAAGCCA+AGG - chr5.2:9991408-9991427 MS.gene041122:CDS 35.0%
ACTGCCAAGTTCATTTCTAA+GGG - chr5.2:9991116-9991135 MS.gene041122:intron 35.0%
ATGATACGGACACACTAAAA+GGG - chr5.2:9990675-9990694 MS.gene041122:CDS 35.0%
TACGCACTCTCAATATATAC+AGG - chr5.2:9991362-9991381 MS.gene041122:CDS 35.0%
TACTGCCAAGTTCATTTCTA+AGG - chr5.2:9991115-9991134 MS.gene041122:intron 35.0%
TGGTTGACAATTATAGCAAG+TGG - chr5.2:9991660-9991679 MS.gene041122:CDS 35.0%
! TTCTAAGGGTCTTGAAAAGA+AGG - chr5.2:9991130-9991149 MS.gene041122:intron 35.0%
! TTGGCAGTAATGTTTTCTAG+AGG + chr5.2:9991104-9991123 None:intergenic 35.0%
AAGCGATGGATCAGATTTAC+CGG + chr5.2:9991453-9991472 None:intergenic 40.0%
ACAATCAGACCAAGCTCTAT+TGG - chr5.2:9991616-9991635 MS.gene041122:CDS 40.0%
AGAAGTGAAGAATCAAGCGA+TGG + chr5.2:9991467-9991486 None:intergenic 40.0%
ATATACTTACTCTAGCAGCC+AGG - chr5.2:9990804-9990823 MS.gene041122:intron 40.0%
CAATCAGACCAAGCTCTATT+GGG - chr5.2:9991617-9991636 MS.gene041122:CDS 40.0%
GATGATACGGACACACTAAA+AGG - chr5.2:9990674-9990693 MS.gene041122:CDS 40.0%
GCAGTTTCCGTTGAGAAAAT+GGG - chr5.2:9991707-9991726 MS.gene041122:CDS 40.0%
TACTAGAAATACAGCATCCC+TGG + chr5.2:9990825-9990844 None:intergenic 40.0%
TATACTTACTCTAGCAGCCA+GGG - chr5.2:9990805-9990824 MS.gene041122:intron 40.0%
TATATCAGCACATGAGACTG+TGG + chr5.2:9990789-9990808 None:intergenic 40.0%
TATTGTCACCCAATAGAGCT+TGG + chr5.2:9991628-9991647 None:intergenic 40.0%
TCAAATGTGTTCGTAGTGAC+AGG + chr5.2:9991554-9991573 None:intergenic 40.0%
TGATACGGACACACTAAAAG+GGG - chr5.2:9990676-9990695 MS.gene041122:CDS 40.0%
TGCAGTTTCCGTTGAGAAAA+TGG - chr5.2:9991706-9991725 MS.gene041122:CDS 40.0%
TGTGTTACATAGGGATGTGA+TGG - chr5.2:9990638-9990657 MS.gene041122:CDS 40.0%
! AATGCGACCCATTTTCTCAA+CGG + chr5.2:9991717-9991736 None:intergenic 40.0%
! ATCTGTGCTACTGGATGATA+CGG - chr5.2:9990661-9990680 MS.gene041122:CDS 40.0%
! TATAGTTGAGAGCACACAAG+TGG + chr5.2:9990388-9990407 None:intergenic 40.0%
! TTCAGAGTAAAGGGCCATTT+TGG - chr5.2:9991003-9991022 MS.gene041122:CDS 40.0%
!! TCAGAGTAAAGGGCCATTTT+GGG - chr5.2:9991004-9991023 MS.gene041122:CDS 40.0%
AAGCCAAGGCTATTCGACTT+TGG - chr5.2:9991422-9991441 MS.gene041122:CDS 45.0%
AGCAGCAATCCTTGAGTCAT+TGG + chr5.2:9990482-9990501 None:intergenic 45.0%
ATACAGGTGCACACACCTTT+GGG - chr5.2:9991378-9991397 MS.gene041122:CDS 45.0%
CAGCTATAGCCAATGACTCA+AGG - chr5.2:9990470-9990489 MS.gene041122:CDS 45.0%
GAGTCGGAATCAGCTTGATT+TGG + chr5.2:9991512-9991531 None:intergenic 45.0%
GTTGAGAAAATGGGTCGCAT+TGG - chr5.2:9991716-9991735 MS.gene041122:CDS 45.0%
TATACAGGTGCACACACCTT+TGG - chr5.2:9991377-9991396 MS.gene041122:CDS 45.0%
TCTAGAGGTTCAAAGGGTGA+GGG + chr5.2:9991089-9991108 None:intergenic 45.0%
TTCGTAGTGACAGGATCCAA+CGG + chr5.2:9991545-9991564 None:intergenic 45.0%
! AGCTGATTCCGACTCCAATT+TGG - chr5.2:9991517-9991536 MS.gene041122:intron 45.0%
! TTCTAGAGGTTCAAAGGGTG+AGG + chr5.2:9991090-9991109 None:intergenic 45.0%
!! ATGTGATGGATCTGTGCTAC+TGG - chr5.2:9990652-9990671 MS.gene041122:CDS 45.0%
AAGGATGTAGCAGTGCTCTC+AGG - chr5.2:9991149-9991168 MS.gene041122:intron 50.0%
AGGATCCAACGGAGCCAAAT+TGG + chr5.2:9991534-9991553 None:intergenic 50.0%
CAACGGAGCCAAATTGGAGT+CGG + chr5.2:9991528-9991547 None:intergenic 50.0%
CCAAGGCTATTCGACTTTGG+TGG - chr5.2:9991425-9991444 MS.gene041122:CDS 50.0%
CCACCAAAGTCGAATAGCCT+TGG + chr5.2:9991428-9991447 None:intergenic 50.0%
CGGGACAACAGGGTCAAATA+AGG - chr5.2:9991747-9991766 MS.gene041122:CDS 50.0%
GTACCTCTTGGTCGTAGAGA+TGG - chr5.2:9991029-9991048 MS.gene041122:CDS 50.0%
TCAGCACATGAGACTGTGGA+TGG + chr5.2:9990785-9990804 None:intergenic 50.0%
! CCAAGAGGTACAGCCCAAAA+TGG + chr5.2:9991020-9991039 None:intergenic 50.0%
! CCATTTTGGGCTGTACCTCT+TGG - chr5.2:9991017-9991036 MS.gene041122:CDS 50.0%
! CTATTCGACTTTGGTGGCTC+CGG - chr5.2:9991431-9991450 MS.gene041122:CDS 50.0%
!! AAAGCATTGCGCGAACCCAA+AGG + chr5.2:9991396-9991415 None:intergenic 50.0%
ATTTGCGTCGCTCTCACTCG+CGG + chr5.2:9991060-9991079 None:intergenic 55.0%
GGTGTTCTTGCGGGACAACA+GGG - chr5.2:9991737-9991756 MS.gene041122:CDS 55.0%
GTGCCATCTCTACGACCAAG+AGG + chr5.2:9991035-9991054 None:intergenic 55.0%
TGGTGTTCTTGCGGGACAAC+AGG - chr5.2:9991736-9991755 MS.gene041122:CDS 55.0%
! CGACTCCAATTTGGCTCCGT+TGG - chr5.2:9991526-9991545 MS.gene041122:intron 55.0%
! GGGTCGCATTGGTGTTCTTG+CGG - chr5.2:9991727-9991746 MS.gene041122:CDS 55.0%
! GGTCGCATTGGTGTTCTTGC+GGG - chr5.2:9991728-9991747 MS.gene041122:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 9990325 9991793 9990325 ID=MS.gene041122
chr5.2 mRNA 9990325 9991793 9990325 ID=MS.gene041122.t1;Parent=MS.gene041122
chr5.2 exon 9991578 9991793 9991578 ID=MS.gene041122.t1.exon1;Parent=MS.gene041122.t1
chr5.2 CDS 9991578 9991793 9991578 ID=cds.MS.gene041122.t1;Parent=MS.gene041122.t1
chr5.2 exon 9991277 9991468 9991277 ID=MS.gene041122.t1.exon2;Parent=MS.gene041122.t1
chr5.2 CDS 9991277 9991468 9991277 ID=cds.MS.gene041122.t1;Parent=MS.gene041122.t1
chr5.2 exon 9990948 9991110 9990948 ID=MS.gene041122.t1.exon3;Parent=MS.gene041122.t1
chr5.2 CDS 9990948 9991110 9990948 ID=cds.MS.gene041122.t1;Parent=MS.gene041122.t1
chr5.2 exon 9990325 9990734 9990325 ID=MS.gene041122.t1.exon4;Parent=MS.gene041122.t1
chr5.2 CDS 9990325 9990734 9990325 ID=cds.MS.gene041122.t1;Parent=MS.gene041122.t1
Gene Sequence

>MS.gene041122

ATGGAGTGTGTGTCTAAGAAACATGTTTTTGTTTTCATGTTTTGTCTTGTGTTTCTTACTCCACTTGTGTGCTCTCAACTATATTACAATTTCTATAACAGAACTTGTCCAAATCTGAACAAAATTGTTAAAGACAATATCTTGTCAGCTATAGCCAATGACTCAAGGATTGCTGCTTCTCTCTTGCGCCTTCATTTCCATGATTGTTTTGTCAATGTAATTAAGCTCTCTCAATTGTTGTTTCTCTTTTATTTTTGCTATTTATATACTCGGAAAAATTTATCAATCAACTATGTGTTTCTTATTTCATTTTTGTGTTACATAGGGATGTGATGGATCTGTGCTACTGGATGATACGGACACACTAAAAGGGGAGAAAAATGCACTTCCTAATAAAAATTCAATAAGAGGATTTGATGTAATTGATAAAATAAAGTCTGATTTAGAGAATGCTTGTCCATCCACAGTCTCATGTGCTGATATACTTACTCTAGCAGCCAGGGATGCTGTATTTCTAGTAAGAACTCGCTGTTTAATTATTTGGAGACTACTTGGTTAAAATTAAAAATTTACTATATGATAATGTTTCTGGGGAACAAGAAAAACAGATTTATCTTGCATGAAAAATTACATATTATTGCATGCATGCTTCCAATTATTAATCAGAACTTCTTTAATTTCAGAGTAAAGGGCCATTTTGGGCTGTACCTCTTGGTCGTAGAGATGGCACAACCGCGAGTGAGAGCGACGCAAATAACTTGCCCTCACCCTTTGAACCTCTAGAAAACATTACTGCCAAGTTCATTTCTAAGGGTCTTGAAAAGAAGGATGTAGCAGTGCTCTCAGGTTTGCTTCTCTTGCAATTATTTGTGCAAAAATATTTATAACACGTATAACGTTTATGATTCGTTAGAGTTGACCTATTCGAATTATGTTATCGTCATTTTCAAGGCTAACATATTTCTAACTCTAATGATCATAAGGTCCTTTCTTGTATACATAAAGTTAGTGAAGAGACCAATTTCATGTGTATTGACTACGCACTCTCAATATATACAGGTGCACACACCTTTGGGTTCGCGCAATGCTTTACATTCAAGCCAAGGCTATTCGACTTTGGTGGCTCCGGTAAATCTGATCCATCGCTTGATTCTTCACTTCTACAAAATTTACAAAAAGTATGTCCAAATCAAGCTGATTCCGACTCCAATTTGGCTCCGTTGGATCCTGTCACTACGAACACATTTGATAACACATATTACAAAAATGTTTTGAGCAATTCTGGGTTACTACAATCAGACCAAGCTCTATTGGGTGACAATACAACTTCTGTATTGGTTGACAATTATAGCAAGTGGCCTATTCTGTTTTTTAGAGATTTTGCAGTTTCCGTTGAGAAAATGGGTCGCATTGGTGTTCTTGCGGGACAACAGGGTCAAATAAGGAAAAATTGTAGGGCCGTTAACTAG
Protein sequence

>MS.gene041122.t1

MECVSKKHVFVFMFCLVFLTPLVCSQLYYNFYNRTCPNLNKIVKDNILSAIANDSRIAASLLRLHFHDCFVNGCDGSVLLDDTDTLKGEKNALPNKNSIRGFDVIDKIKSDLENACPSTVSCADILTLAARDAVFLSKGPFWAVPLGRRDGTTASESDANNLPSPFEPLENITAKFISKGLEKKDVAVLSGAHTFGFAQCFTFKPRLFDFGGSGKSDPSLDSSLLQNLQKVCPNQADSDSNLAPLDPVTTNTFDNTYYKNVLSNSGLLQSDQALLGDNTTSVLVDNYSKWPILFFRDFAVSVEKMGRIGVLAGQQGQIRKNCRAVN