AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042358

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042358.t1 MTR_6g081410 88.551 428 49 0 1 428 53 480 0.0 756
MS.gene042358.t1 MTR_6g066380 86.449 428 58 0 1 428 55 482 0.0 743
MS.gene042358.t1 MTR_6g081780 86.449 428 58 0 1 428 53 480 0.0 736
MS.gene042358.t1 MTR_6g081810 88.084 428 23 1 1 428 55 454 0.0 719
MS.gene042358.t1 MTR_1g108810 61.314 411 157 1 1 411 62 470 0.0 534
MS.gene042358.t1 MTR_8g106670 63.095 420 153 1 1 420 40 457 0.0 528
MS.gene042358.t1 MTR_6g081400 60.839 429 165 2 1 428 43 469 0.0 526
MS.gene042358.t1 MTR_6g081390 61.772 429 161 2 1 428 40 466 0.0 523
MS.gene042358.t1 MTR_6g081300 57.074 417 177 1 1 417 38 452 6.13e-167 477
MS.gene042358.t1 MTR_6g081310 57.639 432 169 3 1 420 24 453 5.05e-163 467
MS.gene042358.t1 MTR_6g081240 56.829 410 174 2 1 409 37 444 1.17e-161 463
MS.gene042358.t1 MTR_1g108840 54.654 419 188 1 1 419 69 485 1.72e-158 457
MS.gene042358.t1 MTR_6g004220 52.257 421 198 2 1 420 51 469 7.32e-153 442
MS.gene042358.t1 MTR_7g082810 50.467 428 210 1 1 428 48 473 1.25e-148 431
MS.gene042358.t1 MTR_6g004220 52.683 410 191 2 1 409 58 465 2.12e-148 431
MS.gene042358.t1 MTR_1g108990 52.381 420 198 1 1 420 53 470 1.03e-144 421
MS.gene042358.t1 MTR_1g109060 50.360 417 205 1 3 419 54 468 1.31e-137 403
MS.gene042358.t1 MTR_1g109060 50.614 407 199 1 3 409 54 458 3.17e-133 392
MS.gene042358.t1 MTR_7g082800 47.815 389 201 1 32 420 1 387 1.46e-130 382
MS.gene042358.t1 MTR_6g004220 52.924 342 158 2 1 341 58 397 3.97e-120 357
MS.gene042358.t1 MTR_2g088400 43.405 417 234 1 1 417 80 494 4.71e-117 351
MS.gene042358.t1 MTR_4g048000 43.124 429 241 2 1 428 92 518 8.22e-115 346
MS.gene042358.t1 MTR_2g078930 42.755 421 232 3 1 416 71 487 2.99e-112 338
MS.gene042358.t1 MTR_2g078960 43.382 408 229 1 1 408 61 466 4.41e-111 335
MS.gene042358.t1 MTR_2g022980 41.346 416 242 1 2 417 77 490 1.58e-109 332
MS.gene042358.t1 MTR_2g079020 41.067 431 245 3 1 426 65 491 1.01e-106 325
MS.gene042358.t1 MTR_2g078970 39.627 429 254 2 1 426 59 485 6.38e-105 320
MS.gene042358.t1 MTR_2g088400 43.421 380 213 1 1 380 80 457 9.61e-104 316
MS.gene042358.t1 MTR_8g063590 42.691 431 240 4 1 428 81 507 1.13e-101 312
MS.gene042358.t1 MTR_5g067460 37.089 426 266 1 1 426 83 506 2.84e-99 307
MS.gene042358.t1 MTR_1g021740 40.385 416 245 2 2 417 64 476 1.12e-95 296
MS.gene042358.t1 MTR_5g090290 40.141 426 253 1 1 426 74 497 4.33e-95 297
MS.gene042358.t1 MTR_5g033100 39.141 419 252 2 1 419 84 499 4.64e-93 290
MS.gene042358.t1 MTR_3g111020 37.799 418 252 3 1 415 79 491 3.64e-92 289
MS.gene042358.t1 MTR_5g010830 35.904 415 264 1 1 415 93 505 5.61e-92 288
MS.gene042358.t1 MTR_1g101500 34.450 418 266 3 1 415 92 504 1.46e-91 287
MS.gene042358.t1 MTR_5g032720 38.609 417 252 3 2 417 65 478 2.08e-90 282
MS.gene042358.t1 MTR_6g004220 52.308 260 121 2 1 259 58 315 3.65e-88 271
MS.gene042358.t1 MTR_8g069470 38.425 419 251 4 1 417 78 491 3.90e-88 277
MS.gene042358.t1 MTR_0039s0080 34.928 418 264 4 1 415 66 478 4.30e-88 277
MS.gene042358.t1 MTR_1g100180 38.369 417 253 3 1 417 71 483 2.81e-86 272
MS.gene042358.t1 MTR_5g032750 39.036 415 249 3 1 414 64 475 6.53e-86 271
MS.gene042358.t1 MTR_7g087410 37.209 430 255 6 2 425 60 480 1.39e-84 267
MS.gene042358.t1 MTR_6g043810 35.308 422 266 3 1 415 51 472 1.73e-84 267
MS.gene042358.t1 MTR_6g043810 35.308 422 266 3 1 415 61 482 1.98e-84 268
MS.gene042358.t1 MTR_7g087410 37.186 398 239 4 32 425 1 391 2.78e-81 256
MS.gene042358.t1 MTR_7g087430 37.565 386 238 2 32 417 1 383 4.50e-81 255
MS.gene042358.t1 MTR_7g087400 34.856 416 267 2 2 417 59 470 8.23e-81 257
MS.gene042358.t1 MTR_3g099700 35.971 417 263 3 2 417 75 488 1.08e-77 250
MS.gene042358.t1 MTR_6g088805 33.575 414 270 2 1 414 55 463 8.16e-77 247
MS.gene042358.t1 MTR_5g087930 36.919 409 234 5 1 408 54 439 1.06e-76 246
MS.gene042358.t1 MTR_3g099720 34.906 424 273 2 2 425 70 490 2.03e-76 246
MS.gene042358.t1 MTR_8g102430 34.058 414 251 3 1 414 51 442 2.61e-76 244
MS.gene042358.t1 MTR_7g087370 34.375 416 240 3 2 417 59 441 3.73e-75 242
MS.gene042358.t1 MTR_6g047610 33.813 417 271 3 1 417 59 470 8.98e-74 239
MS.gene042358.t1 MTR_6g047640 34.772 417 268 2 1 417 59 471 1.49e-73 238
MS.gene042358.t1 MTR_4g027920 31.871 433 285 5 1 428 184 611 7.63e-72 238
MS.gene042358.t1 MTR_6g047640 33.094 417 256 3 1 417 59 452 1.38e-71 233
MS.gene042358.t1 MTR_2g078990 37.898 314 190 2 116 426 3 314 2.89e-69 222
MS.gene042358.t1 MTR_6g027200 35.238 420 261 6 2 417 65 477 1.52e-67 223
MS.gene042358.t1 MTR_6g027190 35.849 424 253 7 2 417 53 465 3.48e-65 217
MS.gene042358.t1 MTR_6g047590 34.293 417 269 3 1 417 59 470 4.10e-65 216
MS.gene042358.t1 MTR_2g435930 29.754 447 281 4 3 426 49 485 7.18e-63 211
MS.gene042358.t1 MTR_5g011540 33.255 424 275 4 2 419 72 493 1.11e-59 202
MS.gene042358.t1 MTR_5g090280 31.043 422 255 4 32 426 1 413 7.85e-54 185
MS.gene042358.t1 MTR_2g079030 38.426 216 130 1 214 426 319 534 1.07e-43 160
MS.gene042358.t1 MTR_3g087820 48.000 75 39 0 90 164 48 122 3.14e-19 83.6
MS.gene042358.t1 MTR_7g007430 48.387 62 32 0 261 322 16 77 1.11e-11 63.9
MS.gene042358.t1 MTR_4g051552 35.714 112 63 4 121 231 191 294 3.84e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042358.t1 AT5G52450 70.188 426 125 1 1 426 53 476 0.0 602
MS.gene042358.t1 AT1G73700 65.802 424 143 1 1 424 51 472 0.0 553
MS.gene042358.t1 AT2G34360 63.895 421 142 3 1 420 54 465 0.0 549
MS.gene042358.t1 AT2G34360 56.190 420 134 2 1 420 54 423 1.63e-166 475
MS.gene042358.t1 AT1G71140 52.038 417 198 1 1 417 53 467 1.29e-149 434
MS.gene042358.t1 AT1G15160 47.887 426 217 2 3 425 60 483 3.77e-142 415
MS.gene042358.t1 AT1G15150 46.714 426 222 2 3 425 60 483 3.96e-140 410
MS.gene042358.t1 AT1G15170 49.400 417 209 1 1 417 61 475 4.93e-140 409
MS.gene042358.t1 AT1G15180 50.361 415 204 1 3 417 64 476 2.13e-135 397
MS.gene042358.t1 AT1G66760 47.381 420 219 1 1 420 55 472 1.08e-134 395
MS.gene042358.t1 AT2G04100 48.201 417 214 2 1 417 57 471 2.80e-134 395
MS.gene042358.t1 AT2G04090 47.722 417 216 2 1 417 57 471 4.38e-132 389
MS.gene042358.t1 AT1G66760 47.433 409 213 1 1 409 55 461 4.45e-131 386
MS.gene042358.t1 AT2G04040 46.824 425 221 3 1 425 54 473 6.21e-131 386
MS.gene042358.t1 AT2G04100 47.932 411 212 2 1 411 57 465 8.34e-131 385
MS.gene042358.t1 AT2G04080 46.353 425 223 3 1 425 54 473 4.43e-129 381
MS.gene042358.t1 AT2G04050 47.857 420 217 1 1 420 54 471 1.67e-128 380
MS.gene042358.t1 AT2G04070 46.429 420 223 2 1 420 54 471 1.25e-127 377
MS.gene042358.t1 AT2G04080 46.229 411 219 2 1 411 54 462 3.23e-125 371
MS.gene042358.t1 AT1G66780 44.656 421 231 1 4 424 65 483 1.71e-124 370
MS.gene042358.t1 AT1G64820 44.231 416 230 1 4 419 59 472 2.97e-122 364
MS.gene042358.t1 AT1G15170 47.765 358 185 1 60 417 1 356 8.94e-120 353
MS.gene042358.t1 AT1G15150 44.715 369 199 2 60 425 1 367 6.53e-116 343
MS.gene042358.t1 AT3G23550 43.627 408 228 1 1 408 58 463 8.16e-114 342
MS.gene042358.t1 AT1G61890 41.487 417 242 1 1 417 74 488 1.56e-113 342
MS.gene042358.t1 AT3G23560 43.382 408 229 1 1 408 66 471 2.95e-112 338
MS.gene042358.t1 AT3G21690 41.966 417 240 1 1 417 79 493 1.28e-111 337
MS.gene042358.t1 AT1G61890 41.363 411 239 1 1 411 74 482 1.45e-110 334
MS.gene042358.t1 AT1G11670 40.528 417 246 1 1 417 77 491 1.49e-110 335
MS.gene042358.t1 AT3G59030 42.925 424 236 3 1 422 78 497 1.87e-107 327
MS.gene042358.t1 AT4G21910 40.528 417 245 2 1 417 84 497 4.14e-105 321
MS.gene042358.t1 AT4G21910 40.528 417 245 2 1 417 84 497 4.14e-105 321
MS.gene042358.t1 AT4G21903 41.007 417 243 2 1 417 80 493 9.55e-105 320
MS.gene042358.t1 AT4G21910 40.048 417 247 2 1 417 82 495 1.85e-104 319
MS.gene042358.t1 AT4G21910 40.048 417 247 2 1 417 82 495 1.85e-104 319
MS.gene042358.t1 AT1G66760 47.590 332 172 1 78 409 4 333 6.26e-103 309
MS.gene042358.t1 AT1G66760 46.628 341 180 1 1 341 55 393 1.06e-102 311
MS.gene042358.t1 AT4G21903 40.741 432 247 4 1 426 80 508 2.45e-102 314
MS.gene042358.t1 AT4G21903 41.192 386 225 1 32 417 1 384 1.10e-99 303
MS.gene042358.t1 AT1G61890 41.053 380 222 1 1 380 74 451 1.30e-97 300
MS.gene042358.t1 AT3G26590 36.754 419 262 2 1 419 72 487 2.82e-93 290
MS.gene042358.t1 AT5G38030 36.754 419 262 2 1 419 72 487 4.22e-92 287
MS.gene042358.t1 AT1G47530 39.904 416 247 2 2 417 63 475 9.21e-92 286
MS.gene042358.t1 AT1G58340 36.627 415 261 1 1 415 85 497 2.07e-91 286
MS.gene042358.t1 AT1G12950 36.754 419 262 2 1 419 94 509 8.25e-91 284
MS.gene042358.t1 AT3G23560 43.103 348 192 3 1 346 66 409 5.55e-89 276
MS.gene042358.t1 AT3G26590 37.629 388 239 2 32 419 1 385 6.34e-89 275
MS.gene042358.t1 AT4G23030 38.186 419 250 4 1 415 59 472 8.16e-89 278
MS.gene042358.t1 AT5G44050 37.170 417 258 3 2 417 68 481 2.46e-88 277
MS.gene042358.t1 AT1G15180 47.350 283 147 1 60 342 1 281 5.48e-88 273
MS.gene042358.t1 AT1G23300 39.141 419 248 4 1 417 71 484 1.93e-86 273
MS.gene042358.t1 AT2G38510 33.976 415 271 3 2 415 34 446 3.46e-86 271
MS.gene042358.t1 AT1G47530 39.896 386 229 2 32 417 1 383 5.24e-86 268
MS.gene042358.t1 AT5G65380 38.849 417 251 3 2 417 65 478 7.81e-86 270
MS.gene042358.t1 AT4G00350 37.890 417 255 2 1 417 115 527 5.58e-85 270
MS.gene042358.t1 AT4G29140 35.024 414 267 1 1 414 83 494 2.46e-84 268
MS.gene042358.t1 AT5G10420 36.941 425 264 3 2 425 66 487 6.91e-84 265
MS.gene042358.t1 AT1G33090 38.732 426 254 5 2 425 64 484 1.32e-83 265
MS.gene042358.t1 AT5G52050 34.689 418 267 2 2 414 63 479 2.57e-83 265
MS.gene042358.t1 AT1G33100 37.559 426 259 4 2 425 61 481 2.12e-82 261
MS.gene042358.t1 AT1G71870 34.033 429 267 2 1 413 51 479 2.43e-81 259
MS.gene042358.t1 AT1G33110 36.854 426 262 5 2 425 64 484 5.31e-81 258
MS.gene042358.t1 AT3G59030 43.149 343 189 3 1 341 78 416 6.37e-81 256
MS.gene042358.t1 AT5G19700 34.458 415 270 1 1 415 63 475 1.93e-79 254
MS.gene042358.t1 AT1G33080 37.288 413 256 3 2 414 64 473 1.08e-78 252
MS.gene042358.t1 AT1G33080 36.557 424 266 3 2 425 64 484 5.95e-78 250
MS.gene042358.t1 AT4G25640 37.650 417 256 2 1 417 61 473 9.57e-78 249
MS.gene042358.t1 AT4G25640 37.650 417 256 2 1 417 61 473 2.75e-77 249
MS.gene042358.t1 AT5G49130 31.507 438 284 4 3 426 55 490 6.40e-73 237
MS.gene042358.t1 AT3G03620 35.167 418 264 5 2 417 65 477 3.87e-72 235
MS.gene042358.t1 AT3G03620 35.167 418 264 5 2 417 65 477 3.87e-72 235
MS.gene042358.t1 AT5G17700 34.928 418 265 5 2 417 62 474 2.48e-70 230
MS.gene042358.t1 AT5G17700 34.928 418 265 5 2 417 62 474 2.48e-70 230
MS.gene042358.t1 AT4G25640 37.831 378 231 2 1 378 61 434 3.26e-70 229
MS.gene042358.t1 AT4G22790 34.279 423 260 6 1 414 57 470 2.89e-68 225
MS.gene042358.t1 AT1G33110 35.965 342 212 5 2 341 64 400 1.07e-54 187
MS.gene042358.t1 AT5G17700 32.749 342 223 5 2 341 62 398 1.14e-45 163
MS.gene042358.t1 AT2G04066 50.000 116 58 0 302 417 48 163 1.68e-31 118

Find 97 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGCAGTATCCAACTTTC+TGG 0.157784 6.2:-79842648 MS.gene042358:CDS
TGTCACTGGTTTCAGTTTAT+TGG 0.161398 6.2:-79845489 MS.gene042358:intron
CGGCTCCCCTCGCGATTATT+TGG 0.178845 6.2:-79843758 MS.gene042358:CDS
GGACTACAATGTGTTCTTTC+AGG 0.185540 6.2:-79842623 MS.gene042358:intron
GAATTAATGGTTCTCCTTTC+CGG 0.209159 6.2:-79843181 MS.gene042358:CDS
ATGGCAAGCTTCAGGAAAAT+TGG 0.241777 6.2:+79843363 None:intergenic
TTATATTAATTCGCAATATA+TGG 0.259888 6.2:-79842730 MS.gene042358:CDS
TGGCAGCTTTGCAAAGTTAA+TGG 0.260230 6.2:-79843676 MS.gene042358:CDS
GATGTTTCCAACTTTGGATT+TGG 0.281039 6.2:+79843151 None:intergenic
CTGTAGATATTTCAGAATCT+TGG 0.299810 6.2:+79843703 None:intergenic
AATGTGGTCATTTGAATTAA+TGG 0.315453 6.2:-79843194 MS.gene042358:CDS
TATTCCTCTATGTTGGATAA+TGG 0.321961 6.2:-79843544 MS.gene042358:CDS
AAACATCAGTGCTTTCTATC+AGG 0.333250 6.2:-79843135 MS.gene042358:intron
GGCTCCCCTCGCGATTATTT+GGG 0.338426 6.2:-79843757 MS.gene042358:CDS
CTTATTTCAGTTATGTTTGT+TGG 0.342855 6.2:-79845566 None:intergenic
AGCACTGATGTTTCCAACTT+TGG 0.342926 6.2:+79843145 None:intergenic
CTTGTTTGGATGATCCCCTT+TGG 0.350508 6.2:-79843009 MS.gene042358:CDS
CTGAAGGAATGGCAAGCTTC+AGG 0.354381 6.2:+79843355 None:intergenic
CTTGACATAGAGTGCGAGTA+TGG 0.361711 6.2:+79843452 None:intergenic
AAGTTGGATACTGCAATAAT+AGG 0.363972 6.2:+79842653 None:intergenic
GTTATGTTTGTTGGTCATCT+TGG 0.368106 6.2:-79845557 MS.gene042358:CDS
TATATTAATTCGCAATATAT+GGG 0.374275 6.2:-79842729 MS.gene042358:CDS
TAATCCACGGGCTGCACGTT+TGG 0.380549 6.2:-79842810 MS.gene042358:CDS
TGAATACATCAGCACTTGTT+TGG 0.382415 6.2:-79843023 MS.gene042358:CDS
TAGCAAGTTCTATATCCTAT+TGG 0.388825 6.2:-79843485 MS.gene042358:CDS
TTCCTTCAGCTGTAATGGTT+TGG 0.389688 6.2:-79843341 MS.gene042358:intron
TGCCATTCCTTCAGCTGTAA+TGG 0.395491 6.2:-79843346 MS.gene042358:CDS
TTGGACTTAGCGGAGCTATA+AGG 0.395877 6.2:-79842990 MS.gene042358:intron
ATGGTATACAAGTCTGGATT+AGG 0.409491 6.2:-79843525 MS.gene042358:CDS
TCATTACAATACGCACTGAT+TGG 0.417373 6.2:-79841872 MS.gene042358:CDS
TATAATGTAGGGACTGTGGC+TGG 0.418025 6.2:-79841937 MS.gene042358:intron
GCGAAACAATACCGCATGTT+AGG 0.421674 6.2:-79843822 MS.gene042358:CDS
CTTGGTGAGTTACCTCTCTC+TGG 0.424071 6.2:-79845539 MS.gene042358:CDS
GTAGAAGACCGTAAGCAAAA+AGG 0.426075 6.2:+79843646 None:intergenic
TCGGGTCATATTATTTAGTC+GGG 0.433602 6.2:-79842081 MS.gene042358:CDS
AAAGCTAATACAACGGCTGC+TGG 0.438237 6.2:+79842055 None:intergenic
TACTTCATATTCCTCTATGT+TGG 0.441146 6.2:-79843551 MS.gene042358:CDS
ACCTCTCTCTGGTGCTTCCA+TGG 0.446304 6.2:-79845528 MS.gene042358:CDS
CTCGGGTCATATTATTTAGT+CGG 0.446432 6.2:-79842082 MS.gene042358:CDS
TGGCAAGCTTCAGGAAAATT+GGG 0.446874 6.2:+79843364 None:intergenic
ATCGCGGAGCTAAACATCAT+TGG 0.460537 6.2:+79843582 None:intergenic
ATCGGTGCATATGTCAATCT+CGG 0.461452 6.2:-79842100 MS.gene042358:CDS
ACATTATGTGGACAATCATA+TGG 0.467051 6.2:-79843846 MS.gene042358:CDS
TGGATAATGGTATACAAGTC+TGG 0.467303 6.2:-79843531 MS.gene042358:CDS
TATGGTAACGTTGATCCAAT+AGG 0.467958 6.2:+79843470 None:intergenic
ATGATCCCCTTTGGACTTAG+CGG 0.481381 6.2:-79843000 MS.gene042358:CDS
GCAAGGAATGGCAAGTGCCT+TGG 0.485131 6.2:-79843871 MS.gene042358:CDS
CTTTGGATTTGGAAGAAGAC+CGG 0.485218 6.2:+79843162 None:intergenic
AACTACGATGCTCTCGATAA+CGG 0.487941 6.2:+79842763 None:intergenic
TCTTCTTCCAAATCCAAAGT+TGG 0.494414 6.2:-79843158 MS.gene042358:CDS
CATTACAATACGCACTGATT+GGG 0.499725 6.2:-79841871 MS.gene042358:CDS
AGAAGCAAAAGAAGTAGCCA+TGG 0.510337 6.2:+79845511 None:intergenic
ATAATGTAGGGACTGTGGCT+GGG 0.512198 6.2:-79841936 MS.gene042358:intron
TAATGTAGGGACTGTGGCTG+GGG 0.516745 6.2:-79841935 MS.gene042358:intron
TCTGAAATATCTACAGAAGC+TGG 0.517147 6.2:-79843696 MS.gene042358:CDS
GTCTCGAATGAACTCGGGGC+TGG 0.517807 6.2:-79842833 MS.gene042358:CDS
CCAGGCACCGCTAGAGGAGT+TGG 0.519060 6.2:-79842133 MS.gene042358:intron
ATAGCTCCGCTAAGTCCAAA+GGG 0.519485 6.2:+79842994 None:intergenic
TTCGTGTCTCGAATGAACTC+GGG 0.520063 6.2:-79842838 MS.gene042358:CDS
AACTCGGGGCTGGTAATCCA+CGG 0.521779 6.2:-79842823 MS.gene042358:CDS
AGTGCCTTGGACACATTATG+TGG 0.523026 6.2:-79843858 MS.gene042358:CDS
AACCATTACAGCTGAAGGAA+TGG 0.525701 6.2:+79843344 None:intergenic
TTGGCCAAGGAAAATGAGAA+TGG 0.526884 6.2:+79843722 None:intergenic
TTGTAGTCCATCCAGAAAGT+TGG 0.532602 6.2:+79842637 None:intergenic
ATTCGTGTCTCGAATGAACT+CGG 0.533394 6.2:-79842839 MS.gene042358:CDS
GTTATCGAGAGCATCGTAGT+TGG 0.542662 6.2:-79842761 MS.gene042358:CDS
TGTATTGCATGTTGGCGGGA+AGG 0.546622 6.2:-79842032 MS.gene042358:intron
ACGCACTGATTGGGAGAAAG+AGG 0.546750 6.2:-79841862 MS.gene042358:intron
TCGGTGCATATGTCAATCTC+GGG 0.547374 6.2:-79842099 MS.gene042358:CDS
ATAGGATATAGAACTTGCTA+TGG 0.548379 6.2:+79843488 None:intergenic
TACCAAACCATTACAGCTGA+AGG 0.549787 6.2:+79843339 None:intergenic
TATAGCTCCGCTAAGTCCAA+AGG 0.562111 6.2:+79842993 None:intergenic
GCAGTATCCAACTTTCTGGA+TGG 0.572181 6.2:-79842644 MS.gene042358:CDS
TACAAGTCTGGATTAGGTAG+CGG 0.575800 6.2:-79843519 MS.gene042358:CDS
TTGCCAACCAACTCCTCTAG+CGG 0.580277 6.2:+79842126 None:intergenic
TATGATCCAGGCACCGCTAG+AGG 0.589188 6.2:-79842139 MS.gene042358:intron
TATACCATTATCCAACATAG+AGG 0.595522 6.2:+79843540 None:intergenic
ACTGCCAAACGTGCAGCCCG+TGG 0.601568 6.2:+79842806 None:intergenic
ACTCGGGGCTGGTAATCCAC+GGG 0.601714 6.2:-79842822 MS.gene042358:CDS
GCCATGGAAGCACCAGAGAG+AGG 0.604914 6.2:+79845527 None:intergenic
ATATTAATTCGCAATATATG+GGG 0.606034 6.2:-79842728 MS.gene042358:CDS
TTGTCCACATAATGTGTCCA+AGG 0.611681 6.2:+79843854 None:intergenic
CAATACAAAAGCTAATACAA+CGG 0.612365 6.2:+79842048 None:intergenic
GTTCATTCTGATGATCGTTG+CGG 0.613330 6.2:-79843778 MS.gene042358:CDS
GCACCGCTAGAGGAGTTGGT+TGG 0.619165 6.2:-79842129 MS.gene042358:CDS
GTTTGCCCAAATAATCGCGA+GGG 0.621861 6.2:+79843752 None:intergenic
TGGTGAGCAGCTTGGAAATG+TGG 0.623415 6.2:-79843210 MS.gene042358:intron
TCGTGTCTCGAATGAACTCG+GGG 0.628228 6.2:-79842837 MS.gene042358:CDS
AAGTCTGGATTAGGTAGCGG+AGG 0.629126 6.2:-79843516 MS.gene042358:CDS
TACTTATAATGTAGGGACTG+TGG 0.637706 6.2:-79841941 MS.gene042358:intron
ATGAAGTAATGTCGTAATCG+CGG 0.647944 6.2:+79843566 None:intergenic
TGTTTGCCCAAATAATCGCG+AGG 0.649848 6.2:+79843751 None:intergenic
ATATTTCAGAATCTTGGCCA+AGG 0.654980 6.2:+79843709 None:intergenic
GATTTGGAAGAAGACCGGAA+AGG 0.687793 6.2:+79843167 None:intergenic
TTTGCCCAAATAATCGCGAG+GGG 0.708469 6.2:+79843753 None:intergenic
TAGCTCCGCTAAGTCCAAAG+GGG 0.724377 6.2:+79842995 None:intergenic
GCATGTGTATGCCTAACATG+CGG 0.781781 6.2:+79843811 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAACTCAATAATAA+AGG + chr6.2:79844155-79844174 None:intergenic 10.0%
!! AATTATAATACTTATAATGT+AGG - chr6.2:79845293-79845312 MS.gene042358:intron 10.0%
!! ATTATAATACTTATAATGTA+GGG - chr6.2:79845294-79845313 MS.gene042358:intron 10.0%
!! GTAATAAAATTATTATGAAT+AGG + chr6.2:79843106-79843125 None:intergenic 10.0%
!!! TTAATTTTGTAATTACATAT+TGG - chr6.2:79844805-79844824 MS.gene042358:intron 10.0%
!!! TTATTTTATTTTTTATAGCA+AGG - chr6.2:79843354-79843373 MS.gene042358:CDS 10.0%
!! AAGTAATCAGAAATAAATAA+AGG + chr6.2:79845489-79845508 None:intergenic 15.0%
!! AATATATATCATACAAAAGA+TGG - chr6.2:79844725-79844744 MS.gene042358:intron 15.0%
!! AGAAAGAAATTAAAAGTTAT+TGG + chr6.2:79844657-79844676 None:intergenic 15.0%
!! ATTATTAGTCAAGTTTAAAT+AGG - chr6.2:79843196-79843215 MS.gene042358:CDS 15.0%
!! GAAAGAAATTAAAAGTTATT+GGG + chr6.2:79844656-79844675 None:intergenic 15.0%
!! TATATTAATTCGCAATATAT+GGG - chr6.2:79844513-79844532 MS.gene042358:intron 15.0%
!! TTATATTAATTCGCAATATA+TGG - chr6.2:79844512-79844531 MS.gene042358:intron 15.0%
!!! AAAAATTGATTTGTCATAAA+TGG + chr6.2:79842149-79842168 None:intergenic 15.0%
!!! TTTACAAAAATGTCTTTTTA+AGG - chr6.2:79842804-79842823 MS.gene042358:CDS 15.0%
!! AAAATTGCTAACATATGATT+TGG - chr6.2:79845259-79845278 MS.gene042358:intron 20.0%
!! AATAAACTCAATAATAAAGG+AGG + chr6.2:79844152-79844171 None:intergenic 20.0%
!! ATATTAATTCGCAATATATG+GGG - chr6.2:79844514-79844533 MS.gene042358:intron 20.0%
!! ATGACATGAATATTTATCAA+AGG + chr6.2:79845445-79845464 None:intergenic 20.0%
!! TTTCTAATAATCAAGCTTTA+GGG + chr6.2:79844969-79844988 None:intergenic 20.0%
!! TTTGTAAATTGTTATGTTGA+CGG + chr6.2:79842792-79842811 None:intergenic 20.0%
!!! AAATAAACCACATTAGTTTT+TGG + chr6.2:79843340-79843359 None:intergenic 20.0%
!!! ATTTCTGATTACTTTTATTC+AGG - chr6.2:79845495-79845514 MS.gene042358:CDS 20.0%
!!! GCTGGATTTTTTTTTTTTTT+TGG - chr6.2:79841828-79841847 MS.gene042358:intron 20.0%
!!! TAAGAAAAATTCCATTGTTT+TGG - chr6.2:79844337-79844356 MS.gene042358:intron 20.0%
!!! TTATTTTTTATAGCAAGGAA+TGG - chr6.2:79843359-79843378 MS.gene042358:CDS 20.0%
! AAAGATAGTCATTCATTATC+TGG + chr6.2:79843147-79843166 None:intergenic 25.0%
! AAGGAAATAATTGAGTTTCA+TGG - chr6.2:79842823-79842842 MS.gene042358:CDS 25.0%
! AATGTGGTCATTTGAATTAA+TGG - chr6.2:79844048-79844067 MS.gene042358:intron 25.0%
! AGATAATGAATGACTATCTT+TGG - chr6.2:79843146-79843165 MS.gene042358:CDS 25.0%
! CAATACAAAAGCTAATACAA+CGG + chr6.2:79845197-79845216 None:intergenic 25.0%
! CTAAAGCTTGATTATTAGAA+AGG - chr6.2:79844968-79844987 MS.gene042358:intron 25.0%
! CTTTCTAATAATCAAGCTTT+AGG + chr6.2:79844970-79844989 None:intergenic 25.0%
! GTTGAATGAGAATTATCTTA+TGG - chr6.2:79842762-79842781 MS.gene042358:CDS 25.0%
! TACAAGATATTGTAAGCTTT+AGG - chr6.2:79843220-79843239 MS.gene042358:intron 25.0%
! TATTTGTGATGAATCATTGT+TGG - chr6.2:79842458-79842477 MS.gene042358:intron 25.0%
! TTATATTGAGACTGCAATTA+TGG - chr6.2:79842989-79843008 MS.gene042358:intron 25.0%
!! AGTATTGAAAACATGGTTTA+AGG + chr6.2:79843028-79843047 None:intergenic 25.0%
!! ATGACAAATCAATTTTTGTG+TGG - chr6.2:79842152-79842171 MS.gene042358:intron 25.0%
!! CGTATCTTTTACTTCTAATA+TGG - chr6.2:79845042-79845061 MS.gene042358:intron 25.0%
!! GATATTCATTAACCTTTTGT+TGG - chr6.2:79844177-79844196 MS.gene042358:intron 25.0%
!!! CTAATAGAGTATTGAAAACA+TGG + chr6.2:79843035-79843054 None:intergenic 25.0%
!!! GACATGATTTTTTATCATAG+TGG + chr6.2:79845002-79845021 None:intergenic 25.0%
AAAACAAAGTCACCAACAAA+AGG + chr6.2:79844192-79844211 None:intergenic 30.0%
AAAACAACGATAGAGACAAA+TGG - chr6.2:79844694-79844713 MS.gene042358:intron 30.0%
AAACAACGATAGAGACAAAT+GGG - chr6.2:79844695-79844714 MS.gene042358:intron 30.0%
AAATCGAAGTAAAACCTTTG+AGG - chr6.2:79842648-79842667 MS.gene042358:CDS 30.0%
AAGTTGGATACTGCAATAAT+AGG + chr6.2:79844592-79844611 None:intergenic 30.0%
ACAGTTACTAATAAGTGGAT+AGG - chr6.2:79844836-79844855 MS.gene042358:intron 30.0%
ACATACACAAACCAAAACAA+TGG + chr6.2:79844351-79844370 None:intergenic 30.0%
ACATTATGTGGACAATCATA+TGG - chr6.2:79843396-79843415 MS.gene042358:CDS 30.0%
ATGAAGAGAACAAGTTTGAT+AGG + chr6.2:79841797-79841816 None:intergenic 30.0%
CAACTTGTATTCAGATACTA+CGG + chr6.2:79844935-79844954 None:intergenic 30.0%
CAAGTTGTCGGAAATAAAAA+TGG + chr6.2:79844014-79844033 None:intergenic 30.0%
CCATATTTGAATCCTCAATT+AGG - chr6.2:79842563-79842582 MS.gene042358:intron 30.0%
CCTAATTGAGGATTCAAATA+TGG + chr6.2:79842566-79842585 None:intergenic 30.0%
CTCCTTCATGTAAAAAAACA+TGG - chr6.2:79843817-79843836 MS.gene042358:CDS 30.0%
CTGTAGATATTTCAGAATCT+TGG + chr6.2:79843542-79843561 None:intergenic 30.0%
GATGACAAAATCTGGAAAAA+TGG - chr6.2:79842740-79842759 MS.gene042358:CDS 30.0%
GCTGCATCAAACATATTTAT+GGG + chr6.2:79842945-79842964 None:intergenic 30.0%
TACTTCATATTCCTCTATGT+TGG - chr6.2:79843691-79843710 MS.gene042358:CDS 30.0%
TAGCAAGTTCTATATCCTAT+TGG - chr6.2:79843757-79843776 MS.gene042358:CDS 30.0%
TAGTACTTAAGTACTAGAGA+AGG + chr6.2:79843933-79843952 None:intergenic 30.0%
TATACCATTATCCAACATAG+AGG + chr6.2:79843705-79843724 None:intergenic 30.0%
TATTCCTCTATGTTGGATAA+TGG - chr6.2:79843698-79843717 MS.gene042358:CDS 30.0%
TCATGTAAAAAAACATGGAC+TGG - chr6.2:79843822-79843841 MS.gene042358:CDS 30.0%
TCTTAGAAATCAGAGGTAAT+GGG + chr6.2:79843078-79843097 None:intergenic 30.0%
TCTTCATCATTATTGTTAGC+TGG - chr6.2:79841810-79841829 MS.gene042358:intron 30.0%
TGAAGAGAACAAGTTTGATA+GGG + chr6.2:79841796-79841815 None:intergenic 30.0%
TGATCACAGTTACTAATAAG+TGG - chr6.2:79844831-79844850 MS.gene042358:intron 30.0%
TTTGAATCTCTACTGTAAAG+AGG - chr6.2:79842319-79842338 MS.gene042358:intron 30.0%
! AGTAGAAAATGTGTTGTTCA+GGG - chr6.2:79844891-79844910 MS.gene042358:intron 30.0%
! GGCTCTAATAAGAGAATATA+TGG - chr6.2:79842623-79842642 MS.gene042358:intron 30.0%
! TACTTTTATTCAGGCAAAGA+AGG - chr6.2:79845504-79845523 MS.gene042358:CDS 30.0%
! TAGTAGAAAATGTGTTGTTC+AGG - chr6.2:79844890-79844909 MS.gene042358:intron 30.0%
!! ACATATGATTTGGTTCAACA+TGG - chr6.2:79845269-79845288 MS.gene042358:intron 30.0%
!! ATAGGATATAGAACTTGCTA+TGG + chr6.2:79843757-79843776 None:intergenic 30.0%
!! CATTTTTATTTCCGACAACT+TGG - chr6.2:79844012-79844031 MS.gene042358:intron 30.0%
!! CTAAAGCTTTTAAGTAGTGT+AGG - chr6.2:79844763-79844782 MS.gene042358:intron 30.0%
!! TTAGCTTTTGTATTGCATGT+TGG - chr6.2:79845202-79845221 MS.gene042358:intron 30.0%
!! TTATGCAGTTTTGTATTCAG+TGG - chr6.2:79844291-79844310 MS.gene042358:intron 30.0%
!!! ACGCTGCTAAGATTTTTTAA+AGG - chr6.2:79841973-79841992 MS.gene042358:intron 30.0%
!!! CGCTGCTAAGATTTTTTAAA+GGG - chr6.2:79841974-79841993 MS.gene042358:intron 30.0%
!!! GTCCATGTTTTTTTACATGA+AGG + chr6.2:79843822-79843841 None:intergenic 30.0%
AAACATCAGTGCTTTCTATC+AGG - chr6.2:79844107-79844126 MS.gene042358:intron 35.0%
AACTCGCATTAATGTTTCCT+AGG + chr6.2:79842034-79842053 None:intergenic 35.0%
AAGGATGAAAGAGATCGTTA+AGG + chr6.2:79845426-79845445 None:intergenic 35.0%
ACTTCGTCCAAAAACTAATG+TGG - chr6.2:79843330-79843349 MS.gene042358:intron 35.0%
AGTGTTTGATCGATAGTGAT+CGG - chr6.2:79842602-79842621 MS.gene042358:intron 35.0%
ATATTTCAGAATCTTGGCCA+AGG + chr6.2:79843536-79843555 None:intergenic 35.0%
ATCACTGTTTGTGTGAAGTA+TGG - chr6.2:79842397-79842416 MS.gene042358:intron 35.0%
ATCCTTCTTAACTATGATCC+AGG - chr6.2:79845091-79845110 MS.gene042358:intron 35.0%
ATGAAGTAATGTCGTAATCG+CGG + chr6.2:79843679-79843698 None:intergenic 35.0%
ATGGTATACAAGTCTGGATT+AGG - chr6.2:79843717-79843736 MS.gene042358:CDS 35.0%
CTCGGGTCATATTATTTAGT+CGG - chr6.2:79845160-79845179 MS.gene042358:intron 35.0%
GAATCCTAACTAGAAAGATG+TGG - chr6.2:79842480-79842499 MS.gene042358:intron 35.0%
GAATTAATGGTTCTCCTTTC+CGG - chr6.2:79844061-79844080 MS.gene042358:intron 35.0%
GATGGATAGATGACAAAATC+TGG - chr6.2:79842732-79842751 MS.gene042358:CDS 35.0%
GATGTTTCCAACTTTGGATT+TGG + chr6.2:79844094-79844113 None:intergenic 35.0%
GGCTGCATCAAACATATTTA+TGG + chr6.2:79842946-79842965 None:intergenic 35.0%
GTAAATTGTTATGTTGACGG+TGG + chr6.2:79842789-79842808 None:intergenic 35.0%
GTCTTAGAAATCAGAGGTAA+TGG + chr6.2:79843079-79843098 None:intergenic 35.0%
GTGAAGTATGGTTAGAGATT+GGG - chr6.2:79842409-79842428 MS.gene042358:intron 35.0%
GTGACAACAGTTGAAAAACT+TGG + chr6.2:79842862-79842881 None:intergenic 35.0%
TACTTATAATGTAGGGACTG+TGG - chr6.2:79845301-79845320 MS.gene042358:intron 35.0%
TATTGCAGTATCCAACTTTC+TGG - chr6.2:79844594-79844613 MS.gene042358:intron 35.0%
TCATGCTGTCTTTGTGATTA+TGG - chr6.2:79842884-79842903 MS.gene042358:intron 35.0%
TCGGGTCATATTATTTAGTC+GGG - chr6.2:79845161-79845180 MS.gene042358:intron 35.0%
TCTTCTTCCAAATCCAAAGT+TGG - chr6.2:79844084-79844103 MS.gene042358:intron 35.0%
TGAATACATCAGCACTTGTT+TGG - chr6.2:79844219-79844238 MS.gene042358:intron 35.0%
TGTGAAGTATGGTTAGAGAT+TGG - chr6.2:79842408-79842427 MS.gene042358:intron 35.0%
TTGAAGTATGGTTAGAGGTT+GGG - chr6.2:79842059-79842078 MS.gene042358:CDS 35.0%
TTTGAATCCTCAATTAGGAG+AGG - chr6.2:79842568-79842587 MS.gene042358:intron 35.0%
! AGATCCATTCTCATTTTCCT+TGG - chr6.2:79843516-79843535 MS.gene042358:CDS 35.0%
! ATGTCAACATTGATTGACAC+TGG - chr6.2:79842703-79842722 MS.gene042358:CDS 35.0%
! TATGGTAACGTTGATCCAAT+AGG + chr6.2:79843775-79843794 None:intergenic 35.0%
! TCATTACAATACGCACTGAT+TGG - chr6.2:79845370-79845389 MS.gene042358:intron 35.0%
! TCTGAAATATCTACAGAAGC+TGG - chr6.2:79843546-79843565 MS.gene042358:CDS 35.0%
! TGGATAATGGTATACAAGTC+TGG - chr6.2:79843711-79843730 MS.gene042358:CDS 35.0%
! TGTGTTTGAAGTATGGTTAG+AGG - chr6.2:79842054-79842073 MS.gene042358:CDS 35.0%
! TTTGAAGTATGGTTAGAGGT+TGG - chr6.2:79842058-79842077 MS.gene042358:CDS 35.0%
! TTTTTGTGTGGAGTACAGTT+TGG - chr6.2:79842164-79842183 MS.gene042358:intron 35.0%
!! AAATCAGAGGTAATGGGAAA+AGG + chr6.2:79843072-79843091 None:intergenic 35.0%
!! AATCAGAGGTAATGGGAAAA+GGG + chr6.2:79843071-79843090 None:intergenic 35.0%
!! ATGACCACATCTTTCTAGTT+AGG + chr6.2:79842487-79842506 None:intergenic 35.0%
!! CATTACAATACGCACTGATT+GGG - chr6.2:79845371-79845390 MS.gene042358:intron 35.0%
!! TGTCACTGGTTTCAGTTTAT+TGG - chr6.2:79841753-79841772 MS.gene042358:intron 35.0%
AACCATTACAGCTGAAGGAA+TGG + chr6.2:79843901-79843920 None:intergenic 40.0%
AACTACGATGCTCTCGATAA+CGG + chr6.2:79844482-79844501 None:intergenic 40.0%
AATGTCGTGCTTCAGAAGAT+TGG + chr6.2:79842005-79842024 None:intergenic 40.0%
ACACATGAGTGGAAGACAAA+CGG - chr6.2:79841939-79841958 MS.gene042358:intron 40.0%
AGAAGCAAAAGAAGTAGCCA+TGG + chr6.2:79841734-79841753 None:intergenic 40.0%
AGCACGACATTTATGAACCT+AGG - chr6.2:79842014-79842033 MS.gene042358:intron 40.0%
ATCAGTGCTTTCTATCAGGT+TGG - chr6.2:79844111-79844130 MS.gene042358:intron 40.0%
ATCGGTGCATATGTCAATCT+CGG - chr6.2:79845142-79845161 MS.gene042358:intron 40.0%
ATGGCAAGCTTCAGGAAAAT+TGG + chr6.2:79843882-79843901 None:intergenic 40.0%
ATTCGTGTCTCGAATGAACT+CGG - chr6.2:79844403-79844422 MS.gene042358:intron 40.0%
CAATCGTCTATACACCTCAA+AGG + chr6.2:79842665-79842684 None:intergenic 40.0%
CTTTGGATTTGGAAGAAGAC+CGG + chr6.2:79844083-79844102 None:intergenic 40.0%
GGACTACAATGTGTTCTTTC+AGG - chr6.2:79844619-79844638 MS.gene042358:intron 40.0%
GGTGTATAGACGATTGACAT+TGG - chr6.2:79842669-79842688 MS.gene042358:CDS 40.0%
GTAGAAGACCGTAAGCAAAA+AGG + chr6.2:79843599-79843618 None:intergenic 40.0%
GTATAGACGATTGACATTGG+TGG - chr6.2:79842672-79842691 MS.gene042358:CDS 40.0%
GTTCATTCTGATGATCGTTG+CGG - chr6.2:79843464-79843483 MS.gene042358:CDS 40.0%
GTTCTTGAGCATTACAACTG+CGG + chr6.2:79842967-79842986 None:intergenic 40.0%
TACCAAACCATTACAGCTGA+AGG + chr6.2:79843906-79843925 None:intergenic 40.0%
TGCCTGGATCATAGTTAAGA+AGG + chr6.2:79845096-79845115 None:intergenic 40.0%
TGGCAAGCTTCAGGAAAATT+GGG + chr6.2:79843881-79843900 None:intergenic 40.0%
TGGCAGCTTTGCAAAGTTAA+TGG - chr6.2:79843566-79843585 MS.gene042358:CDS 40.0%
TGTGTGAGAGTGATTGATGA+TGG - chr6.2:79842117-79842136 MS.gene042358:CDS 40.0%
TTAGACACCTCTCCTAATTG+AGG + chr6.2:79842578-79842597 None:intergenic 40.0%
TTCCTTCAGCTGTAATGGTT+TGG - chr6.2:79843901-79843920 MS.gene042358:intron 40.0%
TTGGCCAAGGAAAATGAGAA+TGG + chr6.2:79843523-79843542 None:intergenic 40.0%
TTGTAGTCCATCCAGAAAGT+TGG + chr6.2:79844608-79844627 None:intergenic 40.0%
TTGTCCACATAATGTGTCCA+AGG + chr6.2:79843391-79843410 None:intergenic 40.0%
! ACTTCTTTTGCTTCTGTCAC+TGG - chr6.2:79841739-79841758 MS.gene042358:intron 40.0%
! AGAGTGATTGACTTTGACTC+TGG - chr6.2:79842519-79842538 MS.gene042358:intron 40.0%
! CATTGATTGACACTGGTTGA+AGG - chr6.2:79842710-79842729 MS.gene042358:CDS 40.0%
! CTTTTGTATTGCATGTTGGC+GGG - chr6.2:79845206-79845225 MS.gene042358:intron 40.0%
! GCGAGTTTGTGTTTGAAGTA+TGG - chr6.2:79842047-79842066 MS.gene042358:CDS 40.0%
! GCTTTTGTATTGCATGTTGG+CGG - chr6.2:79845205-79845224 MS.gene042358:intron 40.0%
! GGAGTTGGTTGGCAAAAAAT+CGG - chr6.2:79845124-79845143 MS.gene042358:intron 40.0%
! TACAAGTCTGGATTAGGTAG+CGG - chr6.2:79843723-79843742 MS.gene042358:CDS 40.0%
!! AGCACTGATGTTTCCAACTT+TGG + chr6.2:79844100-79844119 None:intergenic 40.0%
!! ATCAGAGGTAATGGGAAAAG+GGG + chr6.2:79843070-79843089 None:intergenic 40.0%
!! GGGTTAGTCTTAGAAATCAG+AGG + chr6.2:79843085-79843104 None:intergenic 40.0%
!!! AGCTTTAGGTCTTTTTGCCA+CGG - chr6.2:79843234-79843253 MS.gene042358:intron 40.0%
!!! TATGGGTACTGATTTTCTGC+TGG + chr6.2:79842928-79842947 None:intergenic 40.0%
AAAGCTAATACAACGGCTGC+TGG + chr6.2:79845190-79845209 None:intergenic 45.0%
AAGACCGTAAGCAAAAAGGC+AGG + chr6.2:79843595-79843614 None:intergenic 45.0%
ACATGAGTGGAAGACAAACG+GGG - chr6.2:79841941-79841960 MS.gene042358:intron 45.0%
ACTTGAATCGAAGCGACAAG+AGG + chr6.2:79843274-79843293 None:intergenic 45.0%
AGACCGTAAGCAAAAAGGCA+GGG + chr6.2:79843594-79843613 None:intergenic 45.0%
AGACGATTGACATTGGTGGA+AGG - chr6.2:79842676-79842695 MS.gene042358:CDS 45.0%
AGTGCCTTGGACACATTATG+TGG - chr6.2:79843384-79843403 MS.gene042358:CDS 45.0%
ATAATGTAGGGACTGTGGCT+GGG - chr6.2:79845306-79845325 MS.gene042358:intron 45.0%
ATAGCTCCGCTAAGTCCAAA+GGG + chr6.2:79844251-79844270 None:intergenic 45.0%
ATCGCGGAGCTAAACATCAT+TGG + chr6.2:79843663-79843682 None:intergenic 45.0%
ATGATCCCCTTTGGACTTAG+CGG - chr6.2:79844242-79844261 MS.gene042358:intron 45.0%
CACATGAGTGGAAGACAAAC+GGG - chr6.2:79841940-79841959 MS.gene042358:intron 45.0%
CTTGACATAGAGTGCGAGTA+TGG + chr6.2:79843793-79843812 None:intergenic 45.0%
CTTGTTTGGATGATCCCCTT+TGG - chr6.2:79844233-79844252 MS.gene042358:intron 45.0%
GATTTGGAAGAAGACCGGAA+AGG + chr6.2:79844078-79844097 None:intergenic 45.0%
GCAGTATCCAACTTTCTGGA+TGG - chr6.2:79844598-79844617 MS.gene042358:intron 45.0%
GCATGTGTATGCCTAACATG+CGG + chr6.2:79843434-79843453 None:intergenic 45.0%
GCGAAACAATACCGCATGTT+AGG - chr6.2:79843420-79843439 MS.gene042358:CDS 45.0%
GTGTGTGTGTTACACATGAG+TGG - chr6.2:79841928-79841947 MS.gene042358:CDS 45.0%
GTTTGCCCAAATAATCGCGA+GGG + chr6.2:79843493-79843512 None:intergenic 45.0%
TATAATGTAGGGACTGTGGC+TGG - chr6.2:79845305-79845324 MS.gene042358:intron 45.0%
TATAGCTCCGCTAAGTCCAA+AGG + chr6.2:79844252-79844271 None:intergenic 45.0%
TCGGTGCATATGTCAATCTC+GGG - chr6.2:79845143-79845162 MS.gene042358:intron 45.0%
TGCCATTCCTTCAGCTGTAA+TGG - chr6.2:79843896-79843915 MS.gene042358:intron 45.0%
TGGAAGACAAACGGGGAAAT+AGG - chr6.2:79841948-79841967 MS.gene042358:intron 45.0%
TGTTTGCCCAAATAATCGCG+AGG + chr6.2:79843494-79843513 None:intergenic 45.0%
TTCGTGTCTCGAATGAACTC+GGG - chr6.2:79844404-79844423 MS.gene042358:intron 45.0%
TTGGACTTAGCGGAGCTATA+AGG - chr6.2:79844252-79844271 MS.gene042358:intron 45.0%
TTTGCCCAAATAATCGCGAG+GGG + chr6.2:79843492-79843511 None:intergenic 45.0%
! GATTGACACTGGTTGAAGGA+TGG - chr6.2:79842714-79842733 MS.gene042358:CDS 45.0%
! GTTCCCTGCCTTTTTGCTTA+CGG - chr6.2:79843588-79843607 MS.gene042358:CDS 45.0%
!! GTTATCGAGAGCATCGTAGT+TGG - chr6.2:79844481-79844500 MS.gene042358:intron 45.0%
!! TAATAAAATTATTATGAATA+GGG + chr6.2:79843105-79843124 None:intergenic 5.0%
AGGTAAGTCTCAGTGAACCG+TGG + chr6.2:79843254-79843273 None:intergenic 50.0%
CAAGCTGCTCACCAAGTTGT+CGG + chr6.2:79844026-79844045 None:intergenic 50.0%
CTGAAGGAATGGCAAGCTTC+AGG + chr6.2:79843890-79843909 None:intergenic 50.0%
CTTGGTGAGTTACCTCTCTC+TGG - chr6.2:79841703-79841722 MS.gene042358:CDS 50.0%
TAATGTAGGGACTGTGGCTG+GGG - chr6.2:79845307-79845326 MS.gene042358:intron 50.0%
TAGCTCCGCTAAGTCCAAAG+GGG + chr6.2:79844250-79844269 None:intergenic 50.0%
TCACTCTCACACACTGCATG+TGG + chr6.2:79842110-79842129 None:intergenic 50.0%
TCGTGTCTCGAATGAACTCG+GGG - chr6.2:79844405-79844424 MS.gene042358:intron 50.0%
TGGTGAGCAGCTTGGAAATG+TGG - chr6.2:79844032-79844051 MS.gene042358:intron 50.0%
TGTATTGCATGTTGGCGGGA+AGG - chr6.2:79845210-79845229 MS.gene042358:intron 50.0%
TTGCCAACCAACTCCTCTAG+CGG + chr6.2:79845119-79845138 None:intergenic 50.0%
! AAGTCTGGATTAGGTAGCGG+AGG - chr6.2:79843726-79843745 MS.gene042358:CDS 50.0%
!! ACGCACTGATTGGGAGAAAG+AGG - chr6.2:79845380-79845399 MS.gene042358:intron 50.0%
ACCTCTCTCTGGTGCTTCCA+TGG - chr6.2:79841714-79841733 MS.gene042358:CDS 55.0%
GCAAGGAATGGCAAGTGCCT+TGG - chr6.2:79843371-79843390 MS.gene042358:CDS 55.0%
GGCTCCCCTCGCGATTATTT+GGG - chr6.2:79843485-79843504 MS.gene042358:CDS 55.0%
! AACTCGGGGCTGGTAATCCA+CGG - chr6.2:79844419-79844438 MS.gene042358:intron 55.0%
! CGACAACTTGGTGAGCAGCT+TGG - chr6.2:79844024-79844043 MS.gene042358:intron 55.0%
! TAATCCACGGGCTGCACGTT+TGG - chr6.2:79844432-79844451 MS.gene042358:intron 55.0%
! TATGATCCAGGCACCGCTAG+AGG - chr6.2:79845103-79845122 MS.gene042358:intron 55.0%
CGGCTCCCCTCGCGATTATT+TGG - chr6.2:79843484-79843503 MS.gene042358:CDS 60.0%
GTCTCGAATGAACTCGGGGC+TGG - chr6.2:79844409-79844428 MS.gene042358:intron 60.0%
! ACTCGGGGCTGGTAATCCAC+GGG - chr6.2:79844420-79844439 MS.gene042358:intron 60.0%
! GCACCGCTAGAGGAGTTGGT+TGG - chr6.2:79845113-79845132 MS.gene042358:intron 60.0%
!! GCCATGGAAGCACCAGAGAG+AGG + chr6.2:79841718-79841737 None:intergenic 60.0%
ACTGCCAAACGTGCAGCCCG+TGG + chr6.2:79844439-79844458 None:intergenic 65.0%
CCAACTCCTCTAGCGGTGCC+TGG + chr6.2:79845112-79845131 None:intergenic 65.0%
! CCAGGCACCGCTAGAGGAGT+TGG - chr6.2:79845109-79845128 MS.gene042358:intron 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 79841688 79845576 79841688 ID=MS.gene042358
chr6.2 mRNA 79841688 79845576 79841688 ID=MS.gene042358.t1;Parent=MS.gene042358
chr6.2 exon 79845490 79845576 79845490 ID=MS.gene042358.t1.exon1;Parent=MS.gene042358.t1
chr6.2 CDS 79845490 79845576 79845490 ID=cds.MS.gene042358.t1;Parent=MS.gene042358.t1
chr6.2 exon 79843342 79843892 79843342 ID=MS.gene042358.t1.exon2;Parent=MS.gene042358.t1
chr6.2 CDS 79843342 79843892 79843342 ID=cds.MS.gene042358.t1;Parent=MS.gene042358.t1
chr6.2 exon 79843136 79843222 79843136 ID=MS.gene042358.t1.exon3;Parent=MS.gene042358.t1
chr6.2 CDS 79843136 79843222 79843136 ID=cds.MS.gene042358.t1;Parent=MS.gene042358.t1
chr6.2 exon 79842991 79843047 79842991 ID=MS.gene042358.t1.exon4;Parent=MS.gene042358.t1
chr6.2 CDS 79842991 79843047 79842991 ID=cds.MS.gene042358.t1;Parent=MS.gene042358.t1
chr6.2 exon 79842624 79842862 79842624 ID=MS.gene042358.t1.exon5;Parent=MS.gene042358.t1
chr6.2 CDS 79842624 79842862 79842624 ID=cds.MS.gene042358.t1;Parent=MS.gene042358.t1
chr6.2 exon 79842033 79842151 79842033 ID=MS.gene042358.t1.exon6;Parent=MS.gene042358.t1
chr6.2 CDS 79842033 79842151 79842033 ID=cds.MS.gene042358.t1;Parent=MS.gene042358.t1
chr6.2 exon 79841863 79841949 79841863 ID=MS.gene042358.t1.exon7;Parent=MS.gene042358.t1
chr6.2 CDS 79841863 79841949 79841863 ID=cds.MS.gene042358.t1;Parent=MS.gene042358.t1
chr6.2 exon 79841688 79841747 79841688 ID=MS.gene042358.t1.exon8;Parent=MS.gene042358.t1
chr6.2 CDS 79841688 79841747 79841688 ID=cds.MS.gene042358.t1;Parent=MS.gene042358.t1
Gene Sequence

>MS.gene042358

ATGTTTGTTGGTCATCTTGGTGAGTTACCTCTCTCTGGTGCTTCCATGGCTACTTCTTTTGCTTCTGTCACTGGTTTCAGTTTATTGGTATGTTTTTCTCTGCTTCCCTATCAAACTTGTTCTCTTCATCATTATTGTTAGCTGGATTTTTTTTTTTTTTTGGTAGCAGTATAAGTGAGTATTATTAATATGTCTTTTATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTACACATGAGTGGAAGACAAACGGGGAAATAGGCTACGCTGCTAAGATTTTTTAAAGGGCAAAACCAATCTTCTGAAGCACGACATTTATGAACCTAGGAAACATTAATGCGAGTTTGTGTTTGAAGTATGGTTAGAGGTTGGGTCTAGCATACGAGACTAAGAGTTGTCCACATGCAGTGTGTGAGAGTGATTGATGATGGTAATAGCCATTTATGACAAATCAATTTTTGTGTGGAGTACAGTTTGGTCTAGTGTAAAAGTTTGACTTTGATAGCTATTTGTGATCAATCATTATTTGAATCTTTGCTATAAAGATGTGTTTAAATATAGTGTTTTCTTGTGATTGACTATGATAATAGTCACTTACAACGAATCAATGTTTGAATCTCTACTGTAAAGAGGCTTTAACGTATCGTGTCTGATAGTGACTCACTTTTGTAAAAGTCACATGTGATGAATCACTGTTTGTGTGAAGTATGGTTAGAGATTGGGTATATATAGTGTAAGAGATTGATATCTATTTGTGATGAATCATTGTTGGAATCCTAACTAGAAAGATGTGGTCATGTGTAGTGTTTGAGAGTGATTGACTTTGACTCTGGTAATAATCATTTGTGATGAATCCATATTTGAATCCTCAATTAGGAGAGGTGTCTAAGTATAGTGTTTGATCGATAGTGATCGGCTCTAATAAGAGAATATATGGTGAAATCGAAGTAAAACCTTTGAGGTGTATAGACGATTGACATTGGTGGAAGGATAGATGTCAACATTGATTGACACTGGTTGAAGGATGGATAGATGACAAAATCTGGAAAAATGGTTGAATGAGAATTATCTTATGGTCCACCGTCAACATAACAATTTACAAAAATGTCTTTTTAAGGAAATAATTGAGTTTCATGGATTAAATTTTCAACCAAGTTTTTCAACTGTTGTCACTATCATGCTGTCTTTGTGATTATGGTTACATCGCGATTTTTTTCCAGCAGAAAATCAGTACCCATAAATATGTTTGATGCAGCCGCAGTTGTAATGCTCAAGAACATTTATATTGAGACTGCAATTATGGTTGCAAATTACATCCTTAAACCATGTTTTCAATACTCTATTAGAATAAGCAGACTCCCCTTTTCCCATTACCTCTGATTTCTAAGACTAACCCTATTCATAATAATTTTATTACTCAAACTTAAATTTATGACCAGATAATGAATGACTATCTTTGGTTTGTCAGTTAATTTGTTTTTACTCAAATTATTAGTCAAGTTTAAATAGGATACAAGATATTGTAAGCTTTAGGTCTTTTTGCCACGGTTCACTGAGACTTACCTCTTGTCGCTTCGATTCAAGTCTTGTCACTTTGACTCGCTGAGATTCAGCTCTTGTCACTTCGTCCAAAAACTAATGTGGTTTATTTTATTTTTTATAGCAAGGAATGGCAAGTGCCTTGGACACATTATGTGGACAATCATATGGCGCGAAACAATACCGCATGTTAGGCATACACATGCAAAGAGCAATGTTCATTCTGATGATCGTTGCGGCTCCCCTCGCGATTATTTGGGCAAACACAAGATCCATTCTCATTTTCCTTGGCCAAGATTCTGAAATATCTACAGAAGCTGGCAGCTTTGCAAAGTTAATGGTTCCCTGCCTTTTTGCTTACGGTCTTCTACAATGTCTTAACAGATTCTTACAGACTCAAAATATTGTATTTCCAATGATGTTTAGCTCCGCGATTACGACATTACTTCATATTCCTCTATGTTGGATAATGGTATACAAGTCTGGATTAGGTAGCGGAGGAGCTGCCATAGCAAGTTCTATATCCTATTGGATCAACGTTACCATACTCGCACTCTATGTCAAGTTTTCTCCTTCATGTAAAAAAACATGGACTGGTTTTTCTAAAGAAGCATTTGCACTGAACAATATCCCAATTTTCCTGAAGCTTGCCATTCCTTCAGCTGTAATGGTTTGGTAATTGCCTTCTCTAGTACTTAAGTACTACATCATGCAACATATTATAATAGTTTCATTTCTCTTTAGAGAGATTCTAATGCTGTTTCCATTTTTATTTCCGACAACTTGGTGAGCAGCTTGGAAATGTGGTCATTTGAATTAATGGTTCTCCTTTCCGGTCTTCTTCCAAATCCAAAGTTGGAAACATCAGTGCTTTCTATCAGGTTGGTTTCATATTCAAAATCCTCCTTTATTATTGAGTTTATTATTATGATATTCATTAACCTTTTGTTGGTGACTTTGTTTTGTCAGTTTGAATACATCAGCACTTGTTTGGATGATCCCCTTTGGACTTAGCGGAGCTATAAGGTTAGTTTTCTCAGTTTTTATGCAGTTTTGTATTCAGTGGCAGTCTCTTTCTTTTTTGAATGTTAAGAAAAATTCCATTGTTTTGGTTTGTGTATGTAGTTTCATTAATGCTTGAATGACTCTTGCAGCATTCGTGTCTCGAATGAACTCGGGGCTGGTAATCCACGGGCTGCACGTTTGGCAGTGTATGTCGTTGTAGTGATAGCCGTTATCGAGAGCATCGTAGTTGGAGCTGTGATTATATTAATTCGCAATATATGGGGATATGCTTATAGCAATGAAGAAGAAGTTGTCAAATATGTAGCAATTATGTTGCCTATTATTGCAGTATCCAACTTTCTGGATGGACTACAATGTGTTCTTTCAGGTTTCTCTTCTTCCCAATAACTTTTAATTTCTTTCTTCATAGAGACTGAGTCAAAAACAACGATAGAGACAAATGGGAGCTTCTAATATATATCATACAAAAGATGGTACTTGCAATAGATGCTAAAGCTTTTAAGTAGTGTAGGTAAGAAAATAATTAGAAGTTTAATTTTGTAATTACATATTGGATATGATCACAGTTACTAATAAGTGGATAGGTCGCTCAAACGTAGCGAAACTTGAGCATGATTAGTAGAAAATGTGTTGTTCAGGGTTAATCTTGTAAATCGAACCGTAGTATCTGAATACAAGTTGTATTCTATAAACCCTAAAGCTTGATTATTAGAAAGGTATTGCAGCCACTATGATAAAAAATCATGTCTTATCTATTTGCGTTGTTTTCGTATCTTTTACTTCTAATATGGTCTGTTGTTCTAACAATGCAAATGATATCCTTCTTAACTATGATCCAGGCACCGCTAGAGGAGTTGGTTGGCAAAAAATCGGTGCATATGTCAATCTCGGGTCATATTATTTAGTCGGGATTCCAGCAGCCGTTGTATTAGCTTTTGTATTGCATGTTGGCGGGAAGGTAAATAAATGTTGTTCAGTTTTTCAAAAAATTGCTAACATATGATTTGGTTCAACATGGTAATTATAATACTTATAATGTAGGGACTGTGGCTGGGGATCATATGTGCACTCGTTGTTCAAGTGCTTTCTCTTACGATCATTACAATACGCACTGATTGGGAGAAAGAGGTGAATAATTTCTTCATGCTTCCTTAACGATCTCTTTCATCCTTTGATAAATATTCATGTCATGCATTTTTAGATATTGACATGCCTTTATTTATTTCTGATTACTTTTATTCAGGCAAAGAAGGCTAATGATAGAGTTTATGATTCAATAACAACAGAGAGCTTAGTCTCATGA
Protein sequence

>MS.gene042358.t1

MFVGHLGELPLSGASMATSFASVTGFSLLQGMASALDTLCGQSYGAKQYRMLGIHMQRAMFILMIVAAPLAIIWANTRSILIFLGQDSEISTEAGSFAKLMVPCLFAYGLLQCLNRFLQTQNIVFPMMFSSAITTLLHIPLCWIMVYKSGLGSGGAAIASSISYWINVTILALYVKFSPSCKKTWTGFSKEAFALNNIPIFLKLAIPSAVMVCLEMWSFELMVLLSGLLPNPKLETSVLSISLNTSALVWMIPFGLSGAISIRVSNELGAGNPRAARLAVYVVVVIAVIESIVVGAVIILIRNIWGYAYSNEEEVVKYVAIMLPIIAVSNFLDGLQCVLSGTARGVGWQKIGAYVNLGSYYLVGIPAAVVLAFVLHVGGKGLWLGIICALVVQVLSLTIITIRTDWEKEAKKANDRVYDSITTESLVS