AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59999

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59999.t1 MTR_6g081410 87.137 482 60 1 1 482 1 480 0.0 837
MS.gene59999.t1 MTR_6g081810 89.004 482 25 1 1 482 1 454 0.0 825
MS.gene59999.t1 MTR_6g081780 85.477 482 68 1 1 482 1 480 0.0 817
MS.gene59999.t1 MTR_6g066380 86.722 482 64 0 1 482 1 482 0.0 816
MS.gene59999.t1 MTR_1g108810 59.315 467 184 3 3 465 6 470 0.0 581
MS.gene59999.t1 MTR_6g081400 59.524 462 184 2 22 482 10 469 0.0 564
MS.gene59999.t1 MTR_6g081390 60.606 462 179 2 22 482 7 466 0.0 561
MS.gene59999.t1 MTR_8g106670 60.832 457 177 1 18 474 3 457 0.0 558
MS.gene59999.t1 MTR_6g081300 56.222 450 195 1 22 471 5 452 1.70e-180 514
MS.gene59999.t1 MTR_6g081240 55.180 444 195 3 21 463 4 444 9.63e-173 493
MS.gene59999.t1 MTR_1g108840 51.702 470 218 2 11 473 18 485 5.94e-170 488
MS.gene59999.t1 MTR_6g081310 55.484 465 179 4 22 474 5 453 3.87e-167 480
MS.gene59999.t1 MTR_6g004220 49.783 460 228 2 16 474 12 469 9.16e-161 464
MS.gene59999.t1 MTR_7g082810 48.312 474 241 2 11 482 2 473 9.10e-158 456
MS.gene59999.t1 MTR_6g004220 50.111 449 221 2 16 463 19 465 3.58e-156 453
MS.gene59999.t1 MTR_1g108990 50.753 465 217 2 19 473 7 469 4.49e-153 444
MS.gene59999.t1 MTR_1g109060 47.854 466 241 1 8 473 5 468 2.14e-146 427
MS.gene59999.t1 MTR_1g109060 48.026 456 235 1 8 463 5 458 7.03e-142 416
MS.gene59999.t1 MTR_7g082800 47.938 388 200 1 86 473 1 386 5.79e-130 382
MS.gene59999.t1 MTR_6g004220 49.869 381 188 2 16 395 19 397 5.10e-128 379
MS.gene59999.t1 MTR_2g088400 39.468 489 275 2 2 471 8 494 1.30e-121 365
MS.gene59999.t1 MTR_2g078930 41.079 482 264 5 4 470 11 487 1.47e-121 364
MS.gene59999.t1 MTR_2g078960 42.266 459 262 2 4 462 11 466 5.24e-121 362
MS.gene59999.t1 MTR_4g048000 42.117 444 255 1 28 471 65 506 1.04e-118 358
MS.gene59999.t1 MTR_2g079020 39.754 488 279 4 4 480 8 491 1.80e-115 349
MS.gene59999.t1 MTR_2g078970 38.589 482 285 3 8 480 6 485 1.55e-113 344
MS.gene59999.t1 MTR_2g022980 40.503 437 258 1 35 471 56 490 6.88e-112 340
MS.gene59999.t1 MTR_2g088400 39.159 452 254 2 2 434 8 457 1.73e-108 330
MS.gene59999.t1 MTR_8g063590 40.541 481 269 7 4 471 20 496 1.11e-104 322
MS.gene59999.t1 MTR_5g067460 35.639 477 305 1 4 480 32 506 3.45e-104 322
MS.gene59999.t1 MTR_1g021740 37.996 479 286 5 1 471 1 476 7.20e-102 313
MS.gene59999.t1 MTR_5g090290 39.738 458 273 2 24 480 42 497 9.46e-100 311
MS.gene59999.t1 MTR_3g111020 35.714 476 291 4 4 469 21 491 9.40e-98 305
MS.gene59999.t1 MTR_5g033100 37.916 451 277 2 23 473 52 499 1.46e-97 303
MS.gene59999.t1 MTR_5g010830 34.409 465 303 1 5 469 43 505 2.18e-96 301
MS.gene59999.t1 MTR_6g004220 48.495 299 151 2 16 313 19 315 2.82e-96 294
MS.gene59999.t1 MTR_1g101500 33.121 471 303 4 6 469 39 504 1.75e-95 299
MS.gene59999.t1 MTR_5g032720 37.179 468 287 5 6 471 16 478 1.43e-94 295
MS.gene59999.t1 MTR_8g069470 35.744 484 289 6 5 471 13 491 5.11e-94 294
MS.gene59999.t1 MTR_0039s0080 34.038 473 303 5 1 469 11 478 7.79e-93 291
MS.gene59999.t1 MTR_6g043810 34.388 474 292 4 15 469 9 482 6.92e-91 286
MS.gene59999.t1 MTR_5g032750 37.797 463 274 7 14 468 19 475 2.56e-90 284
MS.gene59999.t1 MTR_1g100180 37.307 453 280 3 19 471 35 483 2.82e-90 284
MS.gene59999.t1 MTR_6g043810 34.607 471 288 4 19 469 2 472 6.94e-90 283
MS.gene59999.t1 MTR_7g087410 36.933 463 277 6 23 479 27 480 4.95e-89 281
MS.gene59999.t1 MTR_7g087400 34.255 470 305 2 2 471 5 470 4.96e-89 280
MS.gene59999.t1 MTR_3g099700 34.238 479 302 5 2 471 14 488 9.22e-85 270
MS.gene59999.t1 MTR_6g088805 32.906 468 301 4 2 468 8 463 4.90e-83 265
MS.gene59999.t1 MTR_3g099720 34.100 478 308 4 6 479 16 490 7.31e-83 265
MS.gene59999.t1 MTR_7g087370 33.262 469 280 3 3 471 6 441 1.14e-82 263
MS.gene59999.t1 MTR_7g087410 37.437 398 238 4 86 479 1 391 4.12e-81 257
MS.gene59999.t1 MTR_8g102430 32.604 457 286 3 12 468 8 442 6.09e-81 258
MS.gene59999.t1 MTR_7g087430 37.824 386 237 2 86 471 1 383 7.56e-81 256
MS.gene59999.t1 MTR_5g087930 34.839 465 267 8 1 462 8 439 2.66e-79 254
MS.gene59999.t1 MTR_6g027200 36.017 472 285 7 4 471 19 477 2.87e-78 253
MS.gene59999.t1 MTR_6g047610 31.579 475 314 5 3 471 1 470 2.87e-76 247
MS.gene59999.t1 MTR_4g027920 31.545 466 305 6 26 482 151 611 1.76e-75 249
MS.gene59999.t1 MTR_6g047640 32.704 477 307 5 3 471 1 471 1.11e-74 243
MS.gene59999.t1 MTR_6g047640 31.237 477 295 6 3 471 1 452 5.64e-73 238
MS.gene59999.t1 MTR_6g027190 35.974 467 280 7 13 471 10 465 8.36e-73 238
MS.gene59999.t1 MTR_2g078990 37.898 314 190 2 170 480 3 314 6.61e-69 223
MS.gene59999.t1 MTR_2g435930 28.717 491 317 4 13 480 5 485 1.03e-68 228
MS.gene59999.t1 MTR_6g047590 32.211 475 311 5 3 471 1 470 1.51e-68 227
MS.gene59999.t1 MTR_5g011540 32.692 468 305 5 14 473 28 493 1.46e-63 214
MS.gene59999.t1 MTR_5g090280 30.806 422 256 4 86 480 1 413 4.89e-53 184
MS.gene59999.t1 MTR_2g079030 38.426 216 130 1 268 480 319 534 7.95e-44 162
MS.gene59999.t1 MTR_3g087820 48.000 75 39 0 144 218 48 122 4.12e-19 83.6
MS.gene59999.t1 MTR_7g007430 48.387 62 32 0 315 376 16 77 7.81e-12 64.3
MS.gene59999.t1 MTR_4g051552 35.714 112 63 4 175 285 191 294 2.77e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59999.t1 AT5G52450 69.348 460 139 1 21 480 19 476 0.0 645
MS.gene59999.t1 AT1G73700 64.179 469 160 2 6 474 8 468 0.0 593
MS.gene59999.t1 AT2G34360 62.826 460 161 3 16 474 15 465 0.0 589
MS.gene59999.t1 AT2G34360 55.773 459 153 2 16 474 15 423 0.0 515
MS.gene59999.t1 AT1G71140 49.892 465 227 2 7 471 9 467 3.21e-159 460
MS.gene59999.t1 AT1G15160 44.948 485 251 4 9 479 1 483 8.24e-149 434
MS.gene59999.t1 AT1G15150 43.918 485 256 4 9 479 1 483 3.38e-148 432
MS.gene59999.t1 AT1G15170 46.452 465 247 1 7 471 13 475 6.36e-147 429
MS.gene59999.t1 AT1G66760 45.032 473 254 4 2 473 4 471 5.92e-143 419
MS.gene59999.t1 AT1G15180 47.021 470 245 2 4 471 9 476 2.96e-142 417
MS.gene59999.t1 AT2G04100 45.032 473 254 3 3 471 1 471 1.11e-139 410
MS.gene59999.t1 AT1G66760 44.924 463 249 4 2 463 4 461 2.38e-139 409
MS.gene59999.t1 AT2G04090 44.186 473 258 3 3 471 1 471 2.00e-137 404
MS.gene59999.t1 AT2G04040 44.351 478 260 4 3 479 1 473 5.73e-137 403
MS.gene59999.t1 AT2G04100 44.946 465 250 3 3 463 1 463 3.55e-136 401
MS.gene59999.t1 AT2G04080 43.933 478 262 4 3 479 1 473 1.24e-135 400
MS.gene59999.t1 AT2G04050 45.243 473 256 2 3 474 1 471 1.35e-135 400
MS.gene59999.t1 AT2G04070 43.975 473 262 3 3 474 1 471 5.87e-133 393
MS.gene59999.t1 AT2G04080 43.750 464 258 3 3 465 1 462 8.77e-132 390
MS.gene59999.t1 AT1G66780 42.612 467 263 2 15 478 19 483 8.37e-128 380
MS.gene59999.t1 AT1G64820 42.857 448 254 1 26 473 27 472 1.59e-127 380
MS.gene59999.t1 AT3G23550 41.505 465 260 2 8 462 1 463 9.76e-121 362
MS.gene59999.t1 AT1G15170 47.765 358 185 1 114 471 1 356 3.07e-119 354
MS.gene59999.t1 AT3G23560 41.113 467 265 2 4 462 7 471 7.25e-119 357
MS.gene59999.t1 AT1G61890 39.130 483 279 3 2 471 8 488 1.64e-118 357
MS.gene59999.t1 AT3G21690 40.889 450 264 1 22 471 46 493 6.39e-116 350
MS.gene59999.t1 AT1G61890 38.994 477 276 3 2 465 8 482 9.75e-116 350
MS.gene59999.t1 AT1G11670 40.090 444 264 1 28 471 50 491 1.24e-115 350
MS.gene59999.t1 AT1G15150 44.715 369 199 2 114 479 1 367 1.89e-115 345
MS.gene59999.t1 AT3G59030 41.632 478 270 5 4 476 24 497 1.38e-113 345
MS.gene59999.t1 AT1G66760 43.797 395 216 4 2 395 4 393 7.34e-111 333
MS.gene59999.t1 AT4G21910 39.865 444 264 2 28 471 57 497 1.82e-108 332
MS.gene59999.t1 AT4G21910 39.865 444 264 2 28 471 57 497 1.82e-108 332
MS.gene59999.t1 AT4G21910 39.189 444 267 2 28 471 55 495 1.98e-107 328
MS.gene59999.t1 AT4G21910 39.189 444 267 2 28 471 55 495 1.98e-107 328
MS.gene59999.t1 AT4G21903 40.465 430 253 2 42 471 67 493 1.71e-106 326
MS.gene59999.t1 AT4G21903 40.225 445 257 4 42 480 67 508 5.96e-104 320
MS.gene59999.t1 AT1G61890 38.565 446 259 3 2 434 8 451 8.61e-103 316
MS.gene59999.t1 AT1G66760 47.590 332 172 1 132 463 4 333 2.82e-102 310
MS.gene59999.t1 AT4G21903 40.933 386 226 1 86 471 1 384 7.71e-99 303
MS.gene59999.t1 AT3G26590 36.142 451 285 2 23 473 40 487 1.02e-98 306
MS.gene59999.t1 AT5G38030 36.364 451 284 2 23 473 40 487 5.46e-98 304
MS.gene59999.t1 AT1G12950 36.344 454 282 4 24 473 59 509 1.08e-96 301
MS.gene59999.t1 AT1G47530 37.849 465 283 3 10 471 14 475 1.14e-96 300
MS.gene59999.t1 AT1G58340 36.009 461 284 2 18 469 39 497 2.43e-96 301
MS.gene59999.t1 AT3G23560 40.750 400 227 2 4 395 7 404 1.82e-95 295
MS.gene59999.t1 AT5G44050 35.974 467 295 3 6 471 18 481 1.63e-93 292
MS.gene59999.t1 AT1G23300 36.920 474 282 6 10 471 16 484 3.95e-93 292
MS.gene59999.t1 AT4G23030 36.632 475 286 5 5 469 3 472 1.98e-91 287
MS.gene59999.t1 AT5G65380 37.716 464 281 5 13 471 18 478 4.53e-91 286
MS.gene59999.t1 AT1G33100 36.575 473 289 6 13 479 14 481 1.05e-90 285
MS.gene59999.t1 AT1G33090 37.029 478 290 7 8 479 12 484 2.16e-90 284
MS.gene59999.t1 AT2G38510 33.559 444 292 3 27 469 5 446 3.15e-90 283
MS.gene59999.t1 AT4G00350 36.441 472 291 4 5 471 60 527 1.58e-89 283
MS.gene59999.t1 AT5G10420 36.325 468 291 4 16 479 23 487 5.19e-89 281
MS.gene59999.t1 AT4G29140 33.836 464 300 2 10 468 33 494 1.06e-88 281
MS.gene59999.t1 AT3G26590 37.887 388 238 2 86 473 1 385 1.13e-88 277
MS.gene59999.t1 AT1G33110 35.565 478 297 7 8 479 12 484 1.46e-88 280
MS.gene59999.t1 AT1G15180 47.350 283 147 1 114 396 1 281 1.43e-87 274
MS.gene59999.t1 AT3G59030 41.562 397 223 5 4 395 24 416 7.01e-87 273
MS.gene59999.t1 AT1G33080 36.797 462 283 5 13 468 15 473 3.00e-86 273
MS.gene59999.t1 AT1G71870 32.632 475 304 2 9 467 5 479 7.30e-86 273
MS.gene59999.t1 AT1G33080 36.152 473 293 5 13 479 15 484 1.26e-85 272
MS.gene59999.t1 AT1G47530 39.637 386 230 2 86 471 1 383 2.91e-85 268
MS.gene59999.t1 AT5G52050 34.169 439 283 2 35 468 42 479 3.56e-85 271
MS.gene59999.t1 AT5G19700 32.495 477 310 2 3 469 1 475 8.06e-84 268
MS.gene59999.t1 AT4G25640 35.639 477 297 4 1 471 1 473 1.85e-82 263
MS.gene59999.t1 AT4G25640 35.639 477 297 4 1 471 1 473 6.40e-82 263
MS.gene59999.t1 AT5G49130 31.098 492 319 5 7 480 1 490 8.83e-81 259
MS.gene59999.t1 AT5G17700 33.693 463 300 5 11 471 17 474 3.00e-76 248
MS.gene59999.t1 AT5G17700 33.693 463 300 5 11 471 17 474 3.00e-76 248
MS.gene59999.t1 AT3G03620 33.476 466 301 6 10 471 17 477 2.54e-75 245
MS.gene59999.t1 AT3G03620 33.476 466 301 6 10 471 17 477 2.54e-75 245
MS.gene59999.t1 AT4G25640 35.616 438 272 4 1 432 1 434 6.18e-75 243
MS.gene59999.t1 AT4G22790 34.066 455 282 6 23 468 25 470 1.43e-73 240
MS.gene59999.t1 AT1G33110 34.518 394 247 7 8 395 12 400 3.99e-62 208
MS.gene59999.t1 AT5G17700 31.443 388 259 5 10 395 16 398 1.26e-51 180
MS.gene59999.t1 AT2G04066 50.000 116 58 0 356 471 48 163 2.25e-31 119

Find 104 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGCAGTATCCAACTTTC+TGG 0.157784 6.1:-72343074 MS.gene59999:CDS
TGTCACTGGTTTCAGTTTAT+TGG 0.161398 6.1:-72345553 MS.gene59999:intron
CGGCTCCCCTCGCGATTATT+TGG 0.178845 6.1:-72344201 MS.gene59999:CDS
GGACTACAATGTGTTCTTTC+AGG 0.185540 6.1:-72343049 MS.gene59999:intron
GAATTAATGGTTCTCCTTTC+CGG 0.209159 6.1:-72343624 MS.gene59999:CDS
ATGGCAAGCTTCAGGAAAAT+TGG 0.241777 6.1:+72343806 None:intergenic
TCTATCTTCTTCTTTCTTGT+TGG 0.255134 6.1:+72345737 None:intergenic
TTATATTAATTCGCAATATA+TGG 0.259888 6.1:-72343156 MS.gene59999:CDS
TGGCAGCTTTGCAAAGTTAA+TGG 0.260230 6.1:-72344119 MS.gene59999:CDS
GATGTTTCCAACTTTGGATT+TGG 0.281039 6.1:+72343594 None:intergenic
AAGAAACAGTTATGGCTATC+AGG 0.285823 6.1:-72345693 MS.gene59999:CDS
CTGTAGATATTTCAGAATCT+TGG 0.299810 6.1:+72344146 None:intergenic
AATGTGGTCATTTGAATTAA+TGG 0.315453 6.1:-72343637 MS.gene59999:CDS
AGAAGAAGATAGAAAAGATT+TGG 0.318478 6.1:-72345727 MS.gene59999:CDS
TATTCCTCTATGTTGGATAA+TGG 0.321961 6.1:-72343987 MS.gene59999:CDS
AAACATCAGTGCTTTCTATC+AGG 0.333250 6.1:-72343578 MS.gene59999:intron
GGCTCCCCTCGCGATTATTT+GGG 0.338426 6.1:-72344200 MS.gene59999:CDS
CTTATTTCAGTTATGTTTGT+TGG 0.342855 6.1:-72345630 MS.gene59999:CDS
AGCACTGATGTTTCCAACTT+TGG 0.342926 6.1:+72343588 None:intergenic
CTTGTTTGGATGATCCCCTT+TGG 0.350508 6.1:-72343436 MS.gene59999:CDS
CTGAAGGAATGGCAAGCTTC+AGG 0.354381 6.1:+72343798 None:intergenic
CTTGACATAGAGTGCGAGTA+TGG 0.361711 6.1:+72343895 None:intergenic
AAGTTGGATACTGCAATAAT+AGG 0.363972 6.1:+72343079 None:intergenic
GTTATGTTTGTTGGTCATCT+TGG 0.368106 6.1:-72345621 MS.gene59999:CDS
TATATTAATTCGCAATATAT+GGG 0.374275 6.1:-72343155 MS.gene59999:CDS
TAATCCACGGGCTGCACGTT+TGG 0.380549 6.1:-72343236 MS.gene59999:CDS
TGAATACATCAGCACTTGTT+TGG 0.382415 6.1:-72343450 MS.gene59999:CDS
TAGCAAGTTCTATATCCTAT+TGG 0.388825 6.1:-72343928 MS.gene59999:CDS
TTCCTTCAGCTGTAATGGTT+TGG 0.389688 6.1:-72343784 MS.gene59999:intron
TTTGTTTCTTCAACAATCAA+TGG 0.392959 6.1:+72345765 None:intergenic
TGCCATTCCTTCAGCTGTAA+TGG 0.395491 6.1:-72343789 MS.gene59999:CDS
TTGGACTTAGCGGAGCTATA+AGG 0.395877 6.1:-72343417 MS.gene59999:intron
TATAATGTAGGGACTGTGGC+TGG 0.403771 6.1:-72342363 MS.gene59999:intron
ATGGTATACAAGTCTGGATT+AGG 0.409491 6.1:-72343968 MS.gene59999:CDS
TCATTACAATACGCACTGAT+TGG 0.417373 6.1:-72342298 MS.gene59999:CDS
CTTGGTGAGTTACCTCTCTC+TGG 0.424071 6.1:-72345603 MS.gene59999:CDS
GTAGAAGACCGTAAGCAAAA+AGG 0.426075 6.1:+72344089 None:intergenic
GCGAAACAATACCGCATGTT+AGG 0.431643 6.1:-72344265 MS.gene59999:CDS
TCGGGTCATATTATTTAGTC+GGG 0.433602 6.1:-72342507 MS.gene59999:CDS
AAAGCTAATACAACGGCTGC+TGG 0.438237 6.1:+72342481 None:intergenic
TACTTCATATTCCTCTATGT+TGG 0.441146 6.1:-72343994 MS.gene59999:CDS
ACCTCTCTCTGGTGCTTCCA+TGG 0.446304 6.1:-72345592 MS.gene59999:CDS
CTCGGGTCATATTATTTAGT+CGG 0.446432 6.1:-72342508 MS.gene59999:CDS
TGGCAAGCTTCAGGAAAATT+GGG 0.446874 6.1:+72343807 None:intergenic
ATCGCGGAGCTAAACATCAT+TGG 0.460537 6.1:+72344025 None:intergenic
ATCGGTGCATATGTCAATCT+CGG 0.461452 6.1:-72342526 MS.gene59999:CDS
ACATTATGTGGACAATCATA+TGG 0.467051 6.1:-72344289 MS.gene59999:CDS
TGGATAATGGTATACAAGTC+TGG 0.467303 6.1:-72343974 MS.gene59999:CDS
TATGGTAACGTTGATCCAAT+AGG 0.467958 6.1:+72343913 None:intergenic
ATGATCCCCTTTGGACTTAG+CGG 0.481381 6.1:-72343427 MS.gene59999:CDS
GCAAGGAATGGCAAGTGCCT+TGG 0.485131 6.1:-72344314 MS.gene59999:CDS
CTTTGGATTTGGAAGAAGAC+CGG 0.485218 6.1:+72343605 None:intergenic
AACTACGATGCTCTCGATAA+CGG 0.487941 6.1:+72343189 None:intergenic
TCTTCTTCCAAATCCAAAGT+TGG 0.494414 6.1:-72343601 MS.gene59999:CDS
CATTACAATACGCACTGATT+GGG 0.499725 6.1:-72342297 MS.gene59999:CDS
AGAAGCAAAAGAAGTAGCCA+TGG 0.510337 6.1:+72345575 None:intergenic
TAATGTAGGGACTGTGGCTG+GGG 0.516745 6.1:-72342361 MS.gene59999:intron
TCTGAAATATCTACAGAAGC+TGG 0.517147 6.1:-72344139 MS.gene59999:CDS
ATAATGTAGGGACTGTGGCT+GGG 0.517314 6.1:-72342362 MS.gene59999:intron
GTCTCGAATGAACTCGGGGC+TGG 0.517807 6.1:-72343259 MS.gene59999:CDS
CCAGGCACCGCTAGAGGAGT+TGG 0.519060 6.1:-72342559 MS.gene59999:intron
ATAGCTCCGCTAAGTCCAAA+GGG 0.519485 6.1:+72343421 None:intergenic
TTCGTGTCTCGAATGAACTC+GGG 0.520063 6.1:-72343264 MS.gene59999:CDS
AACTCGGGGCTGGTAATCCA+CGG 0.521779 6.1:-72343249 MS.gene59999:CDS
AGTGCCTTGGACACATTATG+TGG 0.523026 6.1:-72344301 MS.gene59999:CDS
AAAAGTGTAACTGATATCAA+TGG 0.523107 6.1:+72345669 None:intergenic
AACCATTACAGCTGAAGGAA+TGG 0.525701 6.1:+72343787 None:intergenic
TTGGCCAAGGAAAATGAGAA+TGG 0.526884 6.1:+72344165 None:intergenic
TTGTAGTCCATCCAGAAAGT+TGG 0.532602 6.1:+72343063 None:intergenic
ATTCGTGTCTCGAATGAACT+CGG 0.533394 6.1:-72343265 MS.gene59999:CDS
AAGAAGTGAAGAAACAGTTA+TGG 0.540749 6.1:-72345701 MS.gene59999:CDS
GTTATCGAGAGCATCGTAGT+TGG 0.542662 6.1:-72343187 MS.gene59999:CDS
TGTATTGCATGTTGGCGGGA+AGG 0.546622 6.1:-72342458 MS.gene59999:intron
ACGCACTGATTGGGAGAAAG+AGG 0.546750 6.1:-72342288 MS.gene59999:intron
TCGGTGCATATGTCAATCTC+GGG 0.547374 6.1:-72342525 MS.gene59999:CDS
ATAGGATATAGAACTTGCTA+TGG 0.548379 6.1:+72343931 None:intergenic
TACCAAACCATTACAGCTGA+AGG 0.549787 6.1:+72343782 None:intergenic
TATAGCTCCGCTAAGTCCAA+AGG 0.562111 6.1:+72343420 None:intergenic
GCAGTATCCAACTTTCTGGA+TGG 0.572181 6.1:-72343070 MS.gene59999:CDS
TACAAGTCTGGATTAGGTAG+CGG 0.575800 6.1:-72343962 MS.gene59999:CDS
AGAAACAGTTATGGCTATCA+GGG 0.577408 6.1:-72345692 MS.gene59999:CDS
TTGCCAACCAACTCCTCTAG+CGG 0.580277 6.1:+72342552 None:intergenic
TATGATCCAGGCACCGCTAG+AGG 0.589188 6.1:-72342565 MS.gene59999:intron
TATACCATTATCCAACATAG+AGG 0.595522 6.1:+72343983 None:intergenic
ACTGCCAAACGTGCAGCCCG+TGG 0.601568 6.1:+72343232 None:intergenic
ACTCGGGGCTGGTAATCCAC+GGG 0.601714 6.1:-72343248 MS.gene59999:CDS
GCCATGGAAGCACCAGAGAG+AGG 0.604914 6.1:+72345591 None:intergenic
ATATTAATTCGCAATATATG+GGG 0.606034 6.1:-72343154 MS.gene59999:CDS
TTGTCCACATAATGTGTCCA+AGG 0.611681 6.1:+72344297 None:intergenic
CAATACAAAAGCTAATACAA+CGG 0.612365 6.1:+72342474 None:intergenic
GTTCATTCTGATGATCGTTG+CGG 0.613330 6.1:-72344221 MS.gene59999:CDS
GCACCGCTAGAGGAGTTGGT+TGG 0.619165 6.1:-72342555 MS.gene59999:CDS
GTTTGCCCAAATAATCGCGA+GGG 0.621861 6.1:+72344195 None:intergenic
TGGTGAGCAGCTTGGAAATG+TGG 0.623415 6.1:-72343653 MS.gene59999:intron
TCGTGTCTCGAATGAACTCG+GGG 0.628228 6.1:-72343263 MS.gene59999:CDS
TTCTTATAATGTAGGGACTG+TGG 0.628682 6.1:-72342367 MS.gene59999:intron
AAGTCTGGATTAGGTAGCGG+AGG 0.629126 6.1:-72343959 MS.gene59999:CDS
ATGAAGTAATGTCGTAATCG+CGG 0.647944 6.1:+72344009 None:intergenic
TGTTTGCCCAAATAATCGCG+AGG 0.649848 6.1:+72344194 None:intergenic
ATATTTCAGAATCTTGGCCA+AGG 0.654980 6.1:+72344152 None:intergenic
GATTTGGAAGAAGACCGGAA+AGG 0.687793 6.1:+72343610 None:intergenic
GCATGTGTACGCCTAACATG+CGG 0.699816 6.1:+72344254 None:intergenic
TTTGCCCAAATAATCGCGAG+GGG 0.708469 6.1:+72344196 None:intergenic
TAGCTCCGCTAAGTCCAAAG+GGG 0.724377 6.1:+72343422 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCTAAAAATTTATCAA+AGG + chr6.1:72345686-72345705 None:intergenic 10.0%
!! AATTATAATTCTTATAATGT+AGG - chr6.1:72345534-72345553 MS.gene59999:intron 10.0%
!! ATTATAATTCTTATAATGTA+GGG - chr6.1:72345535-72345554 MS.gene59999:intron 10.0%
!! GTAATAAAATTATTATGAAT+AGG + chr6.1:72343330-72343349 None:intergenic 10.0%
!!! TTAATTTTGTAATTACATAT+TGG - chr6.1:72345046-72345065 MS.gene59999:intron 10.0%
!!! TTATTTTAATTTTTATAGCA+AGG - chr6.1:72343578-72343597 MS.gene59999:intron 10.0%
!! AAGTAATCAGAAATAAATAA+AGG + chr6.1:72345715-72345734 None:intergenic 15.0%
!! AATATATATCATACAAAAGA+TGG - chr6.1:72344966-72344985 MS.gene59999:intron 15.0%
!! AGAAAGAAATTAAAAGTTAT+TGG + chr6.1:72344898-72344917 None:intergenic 15.0%
!! ATTATTAGTCAAGTTTAAAT+AGG - chr6.1:72343420-72343439 MS.gene59999:CDS 15.0%
!! GAAAGAAATTAAAAGTTATT+GGG + chr6.1:72344897-72344916 None:intergenic 15.0%
!! TATATTAATTCGCAATATAT+GGG - chr6.1:72344754-72344773 MS.gene59999:intron 15.0%
!! TTATATTAATTCGCAATATA+TGG - chr6.1:72344753-72344772 MS.gene59999:intron 15.0%
!!! AAAAATTGATTTGTCATAAA+TGG + chr6.1:72342793-72342812 None:intergenic 15.0%
!!! TTTACAAAAATGTCTTTTTA+AGG - chr6.1:72343074-72343093 MS.gene59999:CDS 15.0%
!! AAAATTGCTAACATATGATT+TGG - chr6.1:72345500-72345519 MS.gene59999:intron 20.0%
!! AAAGATAGTTATTCATTATC+TGG + chr6.1:72343371-72343390 None:intergenic 20.0%
!! AGATAATGAATAACTATCTT+TGG - chr6.1:72343370-72343389 MS.gene59999:intron 20.0%
!! ATATTAATTCGCAATATATG+GGG - chr6.1:72344755-72344774 MS.gene59999:intron 20.0%
!! TTTCTAATAATCAAGCTTTA+GGG + chr6.1:72345210-72345229 None:intergenic 20.0%
!!! ATTTCTGATTACTTTTATTC+AGG - chr6.1:72345721-72345740 MS.gene59999:CDS 20.0%
!!! CATTTTTGTAAATTGTTATG+TGG + chr6.1:72343066-72343085 None:intergenic 20.0%
!!! TCAGTTACACTTTTAAATTT+TGG - chr6.1:72342249-72342268 MS.gene59999:intron 20.0%
!!! TTAATTTTTATAGCAAGGAA+TGG - chr6.1:72343583-72343602 MS.gene59999:CDS 20.0%
! AATGTGGTCATTTGAATTAA+TGG - chr6.1:72344272-72344291 MS.gene59999:CDS 25.0%
! ACATACACAAACTAAAACAA+TGG + chr6.1:72344592-72344611 None:intergenic 25.0%
! AGAAGAAGATAGAAAAGATT+TGG - chr6.1:72342182-72342201 MS.gene59999:intron 25.0%
! CAATACAAAAGCTAATACAA+CGG + chr6.1:72345438-72345457 None:intergenic 25.0%
! CAGTCAAAATAATATAGAAG+AGG + chr6.1:72344376-72344395 None:intergenic 25.0%
! CTAAAGCTTGATTATTAGAA+AGG - chr6.1:72345209-72345228 MS.gene59999:intron 25.0%
! CTTATTTCAGTTATGTTTGT+TGG - chr6.1:72342279-72342298 MS.gene59999:intron 25.0%
! CTTTCTAATAATCAAGCTTT+AGG + chr6.1:72345211-72345230 None:intergenic 25.0%
! GTTGAATGAGAATTATCTTA+TGG - chr6.1:72343032-72343051 MS.gene59999:intron 25.0%
! TACAAGATATTGTAAGCTTT+AGG - chr6.1:72343444-72343463 MS.gene59999:CDS 25.0%
! TTTGTAAATTGTTATGTGGA+CGG + chr6.1:72343062-72343081 None:intergenic 25.0%
!! AAAAGTGTAACTGATATCAA+TGG + chr6.1:72342243-72342262 None:intergenic 25.0%
!! ATTAGAAAATGTGTTGTTCA+GGG - chr6.1:72345132-72345151 MS.gene59999:intron 25.0%
!! CGTATCTTTTACTTCTAATA+TGG - chr6.1:72345283-72345302 MS.gene59999:intron 25.0%
!! TATTAGAAAATGTGTTGTTC+AGG - chr6.1:72345131-72345150 MS.gene59999:intron 25.0%
!! TTTGTTTCTTCAACAATCAA+TGG + chr6.1:72342147-72342166 None:intergenic 25.0%
!!! AAATAAACCACGTTAGTTTT+TGG + chr6.1:72343564-72343583 None:intergenic 25.0%
!!! CTAATAGAGTATTGAAAACA+TGG + chr6.1:72343259-72343278 None:intergenic 25.0%
!!! GACATGATTTTTTATCATAG+TGG + chr6.1:72345243-72345262 None:intergenic 25.0%
!!! GCTGGATATTTTTTTTTTCT+TGG - chr6.1:72342431-72342450 MS.gene59999:intron 25.0%
AAAACAAAGTCACCAACAAA+AGG + chr6.1:72344432-72344451 None:intergenic 30.0%
AAAACAACGATAGAGACAAA+TGG - chr6.1:72344935-72344954 MS.gene59999:intron 30.0%
AAACAACGATAGAGACAAAT+GGG - chr6.1:72344936-72344955 MS.gene59999:intron 30.0%
AAGAAGTGAAGAAACAGTTA+TGG - chr6.1:72342208-72342227 MS.gene59999:intron 30.0%
AAGGAAATAGTTGAGTTTCA+TGG - chr6.1:72343093-72343112 MS.gene59999:CDS 30.0%
AAGTTGGATACTGCAATAAT+AGG + chr6.1:72344833-72344852 None:intergenic 30.0%
ACAGTTACTAATAAGTGGAT+AGG - chr6.1:72345077-72345096 MS.gene59999:intron 30.0%
ACATTATGTGGACAATCATA+TGG - chr6.1:72343620-72343639 MS.gene59999:CDS 30.0%
ATGAAGAGAACAAGTTTGAT+AGG + chr6.1:72342400-72342419 None:intergenic 30.0%
CAACTTGTATTCAGATACTA+CGG + chr6.1:72345176-72345195 None:intergenic 30.0%
CAAGTTGTCGGAAATAAAAA+TGG + chr6.1:72344238-72344257 None:intergenic 30.0%
CCTGCATCAAACATATTTAT+GGG + chr6.1:72343215-72343234 None:intergenic 30.0%
CTGTAGATATTTCAGAATCT+TGG + chr6.1:72343766-72343785 None:intergenic 30.0%
GATGACAAAATCTGGAAAAA+TGG - chr6.1:72343010-72343029 MS.gene59999:intron 30.0%
TACTTCATATTCCTCTATGT+TGG - chr6.1:72343915-72343934 MS.gene59999:CDS 30.0%
TAGCAAGTTCTATATCCTAT+TGG - chr6.1:72343981-72344000 MS.gene59999:CDS 30.0%
TAGTACTTAAGTACTAGAGA+AGG + chr6.1:72344157-72344176 None:intergenic 30.0%
TATACCATTATCCAACATAG+AGG + chr6.1:72343929-72343948 None:intergenic 30.0%
TATTCCTCTATGTTGGATAA+TGG - chr6.1:72343922-72343941 MS.gene59999:CDS 30.0%
TCTATCTTCTTCTTTCTTGT+TGG + chr6.1:72342175-72342194 None:intergenic 30.0%
TCTTAGAAATCAGAGGTAAT+GGG + chr6.1:72343302-72343321 None:intergenic 30.0%
TCTTCATCATTATTGTTAGC+TGG - chr6.1:72342413-72342432 MS.gene59999:intron 30.0%
TGAAGAGAACAAGTTTGATA+GGG + chr6.1:72342399-72342418 None:intergenic 30.0%
TGATCACAGTTACTAATAAG+TGG - chr6.1:72345072-72345091 MS.gene59999:intron 30.0%
! GATTTTCACTAACCTTTTGT+TGG - chr6.1:72344417-72344436 MS.gene59999:intron 30.0%
! TACTTTTATTCAGGCAAAGA+AGG - chr6.1:72345730-72345749 MS.gene59999:CDS 30.0%
! TGTTTTCTTGTGATTGACTA+TGG - chr6.1:72342879-72342898 MS.gene59999:intron 30.0%
!! ACATATGATTTGGTTCAACA+TGG - chr6.1:72345510-72345529 MS.gene59999:intron 30.0%
!! ATAGGATATAGAACTTGCTA+TGG + chr6.1:72343981-72344000 None:intergenic 30.0%
!! CATTTTTATTTCCGACAACT+TGG - chr6.1:72344236-72344255 MS.gene59999:CDS 30.0%
!! CTAAAGCTTTTAAGTAGTGT+AGG - chr6.1:72345004-72345023 MS.gene59999:intron 30.0%
!! TTAGCTTTTGTATTGCATGT+TGG - chr6.1:72345443-72345462 MS.gene59999:intron 30.0%
!! TTATGCAGTTTTGTATTCAG+TGG - chr6.1:72344531-72344550 MS.gene59999:intron 30.0%
!!! ACGCTGCTAAGATTTTTTAA+AGG - chr6.1:72342617-72342636 MS.gene59999:intron 30.0%
!!! CGCTGCTAAGATTTTTTAAA+GGG - chr6.1:72342618-72342637 MS.gene59999:intron 30.0%
AAACATCAGTGCTTTCTATC+AGG - chr6.1:72344331-72344350 MS.gene59999:intron 35.0%
AACTCGCATTAATGTTTCCT+AGG + chr6.1:72342678-72342697 None:intergenic 35.0%
AAGAAACAGTTATGGCTATC+AGG - chr6.1:72342216-72342235 MS.gene59999:intron 35.0%
AAGGATGAAAGAGATCGTTA+AGG + chr6.1:72345667-72345686 None:intergenic 35.0%
AATGTCGTGCTTCATAAGAT+TGG + chr6.1:72342649-72342668 None:intergenic 35.0%
ACTGTAAAGACGATTGACAT+TGG - chr6.1:72342939-72342958 MS.gene59999:intron 35.0%
AGAAACAGTTATGGCTATCA+GGG - chr6.1:72342217-72342236 MS.gene59999:intron 35.0%
ATATTTCAGAATCTTGGCCA+AGG + chr6.1:72343760-72343779 None:intergenic 35.0%
ATCCTTCTTAACTATGATCC+AGG - chr6.1:72345332-72345351 MS.gene59999:intron 35.0%
ATGAAGTAATGTCGTAATCG+CGG + chr6.1:72343903-72343922 None:intergenic 35.0%
ATGGTATACAAGTCTGGATT+AGG - chr6.1:72343941-72343960 MS.gene59999:CDS 35.0%
CCCATAAATATGTTTGATGC+AGG - chr6.1:72343212-72343231 MS.gene59999:CDS 35.0%
CTCCTTCGTGTAAAAAAACA+TGG - chr6.1:72344041-72344060 MS.gene59999:CDS 35.0%
CTCGGGTCATATTATTTAGT+CGG - chr6.1:72345401-72345420 MS.gene59999:intron 35.0%
GAATTAATGGTTCTCCTTTC+CGG - chr6.1:72344285-72344304 MS.gene59999:CDS 35.0%
GATGGATAGATGACAAAATC+TGG - chr6.1:72343002-72343021 MS.gene59999:intron 35.0%
GATGTTTCCAACTTTGGATT+TGG + chr6.1:72344318-72344337 None:intergenic 35.0%
GCCTGCATCAAACATATTTA+TGG + chr6.1:72343216-72343235 None:intergenic 35.0%
GTCTTAGAAATCAGAGGTAA+TGG + chr6.1:72343303-72343322 None:intergenic 35.0%
GTGACAACAGTTGAAAAACT+TGG + chr6.1:72343132-72343151 None:intergenic 35.0%
TATTGCAGTATCCAACTTTC+TGG - chr6.1:72344835-72344854 MS.gene59999:intron 35.0%
TCATGCTGTCTTTGTGATTA+TGG - chr6.1:72343154-72343173 MS.gene59999:CDS 35.0%
TCGGGTCATATTATTTAGTC+GGG - chr6.1:72345402-72345421 MS.gene59999:intron 35.0%
TCGTGTAAAAAAACATGGAC+TGG - chr6.1:72344046-72344065 MS.gene59999:CDS 35.0%
TCTTCTTCCAAATCCAAAGT+TGG - chr6.1:72344308-72344327 MS.gene59999:CDS 35.0%
TGAATACATCAGCACTTGTT+TGG - chr6.1:72344459-72344478 MS.gene59999:intron 35.0%
TTCTTATAATGTAGGGACTG+TGG - chr6.1:72345542-72345561 MS.gene59999:intron 35.0%
TTGAAGTATGGTTAGAGGTT+GGG - chr6.1:72342703-72342722 MS.gene59999:intron 35.0%
! AGATCCATTCTCATTTTCCT+TGG - chr6.1:72343740-72343759 MS.gene59999:intron 35.0%
! ATGTCAACATTGATTGACAC+TGG - chr6.1:72342973-72342992 MS.gene59999:intron 35.0%
! GTTATGTTTGTTGGTCATCT+TGG - chr6.1:72342288-72342307 MS.gene59999:intron 35.0%
! TATGGTAACGTTGATCCAAT+AGG + chr6.1:72343999-72344018 None:intergenic 35.0%
! TCATTACAATACGCACTGAT+TGG - chr6.1:72345611-72345630 MS.gene59999:CDS 35.0%
! TCTGAAATATCTACAGAAGC+TGG - chr6.1:72343770-72343789 MS.gene59999:intron 35.0%
! TGGATAATGGTATACAAGTC+TGG - chr6.1:72343935-72343954 MS.gene59999:CDS 35.0%
! TGTGTTTGAAGTATGGTTAG+AGG - chr6.1:72342698-72342717 MS.gene59999:intron 35.0%
! TTTGAAGTATGGTTAGAGGT+TGG - chr6.1:72342702-72342721 MS.gene59999:intron 35.0%
!! AAATCAGAGGTAATGGGAAA+AGG + chr6.1:72343296-72343315 None:intergenic 35.0%
!! AATCAGAGGTAATGGGAAAA+GGG + chr6.1:72343295-72343314 None:intergenic 35.0%
!! CATTACAATACGCACTGATT+GGG - chr6.1:72345612-72345631 MS.gene59999:CDS 35.0%
!! TGTCACTGGTTTCAGTTTAT+TGG - chr6.1:72342356-72342375 MS.gene59999:CDS 35.0%
!!! GTCCATGTTTTTTTACACGA+AGG + chr6.1:72344046-72344065 None:intergenic 35.0%
AACCATTACAGCTGAAGGAA+TGG + chr6.1:72344125-72344144 None:intergenic 40.0%
AACTACGATGCTCTCGATAA+CGG + chr6.1:72344723-72344742 None:intergenic 40.0%
ACACATGAGTGGAAGACAAA+CGG - chr6.1:72342583-72342602 MS.gene59999:intron 40.0%
ACTTCGTCCAAAAACTAACG+TGG - chr6.1:72343554-72343573 MS.gene59999:intron 40.0%
AGAAGCAAAAGAAGTAGCCA+TGG + chr6.1:72342337-72342356 None:intergenic 40.0%
AGCACGACATTTATGAACCT+AGG - chr6.1:72342658-72342677 MS.gene59999:intron 40.0%
ATCAGTGCTTTCTATCAGGT+TGG - chr6.1:72344335-72344354 MS.gene59999:intron 40.0%
ATCGGTGCATATGTCAATCT+CGG - chr6.1:72345383-72345402 MS.gene59999:intron 40.0%
ATGGCAAGCTTCAGGAAAAT+TGG + chr6.1:72344106-72344125 None:intergenic 40.0%
ATTCGTGTCTCGAATGAACT+CGG - chr6.1:72344644-72344663 MS.gene59999:intron 40.0%
CTTTGGATTTGGAAGAAGAC+CGG + chr6.1:72344307-72344326 None:intergenic 40.0%
GGACTACAATGTGTTCTTTC+AGG - chr6.1:72344860-72344879 MS.gene59999:intron 40.0%
GTAAAGACGATTGACATTGG+TGG - chr6.1:72342942-72342961 MS.gene59999:intron 40.0%
GTAAATTGTTATGTGGACGG+TGG + chr6.1:72343059-72343078 None:intergenic 40.0%
GTAGAAGACCGTAAGCAAAA+AGG + chr6.1:72343823-72343842 None:intergenic 40.0%
GTTCATTCTGATGATCGTTG+CGG - chr6.1:72343688-72343707 MS.gene59999:intron 40.0%
TACCAAACCATTACAGCTGA+AGG + chr6.1:72344130-72344149 None:intergenic 40.0%
TGCCTGGATCATAGTTAAGA+AGG + chr6.1:72345337-72345356 None:intergenic 40.0%
TGGCAAGCTTCAGGAAAATT+GGG + chr6.1:72344105-72344124 None:intergenic 40.0%
TGGCAGCTTTGCAAAGTTAA+TGG - chr6.1:72343790-72343809 MS.gene59999:CDS 40.0%
TGTGTGAGAGTGATTGATGA+TGG - chr6.1:72342761-72342780 MS.gene59999:intron 40.0%
TTCCTTCAGCTGTAATGGTT+TGG - chr6.1:72344125-72344144 MS.gene59999:CDS 40.0%
TTGGCCAAGGAAAATGAGAA+TGG + chr6.1:72343747-72343766 None:intergenic 40.0%
TTGTAGTCCATCCAGAAAGT+TGG + chr6.1:72344849-72344868 None:intergenic 40.0%
TTGTCCACATAATGTGTCCA+AGG + chr6.1:72343615-72343634 None:intergenic 40.0%
! ACTTCTTTTGCTTCTGTCAC+TGG - chr6.1:72342342-72342361 MS.gene59999:CDS 40.0%
! CATTGATTGACACTGGTTGA+AGG - chr6.1:72342980-72342999 MS.gene59999:intron 40.0%
! CTTTTGTATTGCATGTTGGC+GGG - chr6.1:72345447-72345466 MS.gene59999:intron 40.0%
! GCGAGTTTGTGTTTGAAGTA+TGG - chr6.1:72342691-72342710 MS.gene59999:intron 40.0%
! GCTTTTGTATTGCATGTTGG+CGG - chr6.1:72345446-72345465 MS.gene59999:intron 40.0%
! GGAGTTGGTTGGCAAAAAAT+CGG - chr6.1:72345365-72345384 MS.gene59999:intron 40.0%
! TACAAGTCTGGATTAGGTAG+CGG - chr6.1:72343947-72343966 MS.gene59999:CDS 40.0%
!! AGCACTGATGTTTCCAACTT+TGG + chr6.1:72344324-72344343 None:intergenic 40.0%
!! ATCAGAGGTAATGGGAAAAG+GGG + chr6.1:72343294-72343313 None:intergenic 40.0%
!! GGGTTAGTCTTAGAAATCAG+AGG + chr6.1:72343309-72343328 None:intergenic 40.0%
!!! AGCTTTAGGTCTTTTTGCCA+CGG - chr6.1:72343458-72343477 MS.gene59999:intron 40.0%
!!! TATGGGTACTGATTTTCTGC+TGG + chr6.1:72343198-72343217 None:intergenic 40.0%
AAAGCTAATACAACGGCTGC+TGG + chr6.1:72345431-72345450 None:intergenic 45.0%
AAGACCGTAAGCAAAAAGGC+AGG + chr6.1:72343819-72343838 None:intergenic 45.0%
ACATGAGTGGAAGACAAACG+GGG - chr6.1:72342585-72342604 MS.gene59999:intron 45.0%
ACTTGAATCGAAGCGACAAG+AGG + chr6.1:72343498-72343517 None:intergenic 45.0%
AGACCGTAAGCAAAAAGGCA+GGG + chr6.1:72343818-72343837 None:intergenic 45.0%
AGACGATTGACATTGGTGGA+AGG - chr6.1:72342946-72342965 MS.gene59999:intron 45.0%
AGTGCCTTGGACACATTATG+TGG - chr6.1:72343608-72343627 MS.gene59999:CDS 45.0%
ATAATGTAGGGACTGTGGCT+GGG - chr6.1:72345547-72345566 MS.gene59999:intron 45.0%
ATAGCTCCGCTAAGTCCAAA+GGG + chr6.1:72344491-72344510 None:intergenic 45.0%
ATCGCGGAGCTAAACATCAT+TGG + chr6.1:72343887-72343906 None:intergenic 45.0%
ATGATCCCCTTTGGACTTAG+CGG - chr6.1:72344482-72344501 MS.gene59999:intron 45.0%
CACATGAGTGGAAGACAAAC+GGG - chr6.1:72342584-72342603 MS.gene59999:intron 45.0%
CTTGACATAGAGTGCGAGTA+TGG + chr6.1:72344017-72344036 None:intergenic 45.0%
CTTGTTTGGATGATCCCCTT+TGG - chr6.1:72344473-72344492 MS.gene59999:intron 45.0%
GATTTGGAAGAAGACCGGAA+AGG + chr6.1:72344302-72344321 None:intergenic 45.0%
GCAGTATCCAACTTTCTGGA+TGG - chr6.1:72344839-72344858 MS.gene59999:intron 45.0%
GCGAAACAATACCGCATGTT+AGG - chr6.1:72343644-72343663 MS.gene59999:CDS 45.0%
GTGTGTGTGTTACACATGAG+TGG - chr6.1:72342572-72342591 MS.gene59999:intron 45.0%
GTTTGCCCAAATAATCGCGA+GGG + chr6.1:72343717-72343736 None:intergenic 45.0%
TATAATGTAGGGACTGTGGC+TGG - chr6.1:72345546-72345565 MS.gene59999:intron 45.0%
TATAGCTCCGCTAAGTCCAA+AGG + chr6.1:72344492-72344511 None:intergenic 45.0%
TCGGTGCATATGTCAATCTC+GGG - chr6.1:72345384-72345403 MS.gene59999:intron 45.0%
TGCCATTCCTTCAGCTGTAA+TGG - chr6.1:72344120-72344139 MS.gene59999:CDS 45.0%
TGGAAGACAAACGGGGAAAT+AGG - chr6.1:72342592-72342611 MS.gene59999:intron 45.0%
TGTTTGCCCAAATAATCGCG+AGG + chr6.1:72343718-72343737 None:intergenic 45.0%
TTCGTGTCTCGAATGAACTC+GGG - chr6.1:72344645-72344664 MS.gene59999:intron 45.0%
TTGGACTTAGCGGAGCTATA+AGG - chr6.1:72344492-72344511 MS.gene59999:intron 45.0%
TTTGCCCAAATAATCGCGAG+GGG + chr6.1:72343716-72343735 None:intergenic 45.0%
! GATTGACACTGGTTGAAGGA+TGG - chr6.1:72342984-72343003 MS.gene59999:intron 45.0%
! GTTCCCTGCCTTTTTGCTTA+CGG - chr6.1:72343812-72343831 MS.gene59999:CDS 45.0%
!! GTTATCGAGAGCATCGTAGT+TGG - chr6.1:72344722-72344741 MS.gene59999:intron 45.0%
!! TAATAAAATTATTATGAATA+GGG + chr6.1:72343329-72343348 None:intergenic 5.0%
AGGTAAGTCTCAGTGAACCG+TGG + chr6.1:72343478-72343497 None:intergenic 50.0%
CAAGCTGCTCACCAAGTTGT+CGG + chr6.1:72344250-72344269 None:intergenic 50.0%
CTGAAGGAATGGCAAGCTTC+AGG + chr6.1:72344114-72344133 None:intergenic 50.0%
CTTGGTGAGTTACCTCTCTC+TGG - chr6.1:72342306-72342325 MS.gene59999:CDS 50.0%
GCATGTGTACGCCTAACATG+CGG + chr6.1:72343658-72343677 None:intergenic 50.0%
TAATGTAGGGACTGTGGCTG+GGG - chr6.1:72345548-72345567 MS.gene59999:intron 50.0%
TAGCTCCGCTAAGTCCAAAG+GGG + chr6.1:72344490-72344509 None:intergenic 50.0%
TCACTCTCACACACTGCATG+TGG + chr6.1:72342754-72342773 None:intergenic 50.0%
TCGTGTCTCGAATGAACTCG+GGG - chr6.1:72344646-72344665 MS.gene59999:intron 50.0%
TGGTGAGCAGCTTGGAAATG+TGG - chr6.1:72344256-72344275 MS.gene59999:CDS 50.0%
TGTATTGCATGTTGGCGGGA+AGG - chr6.1:72345451-72345470 MS.gene59999:intron 50.0%
TTGCCAACCAACTCCTCTAG+CGG + chr6.1:72345360-72345379 None:intergenic 50.0%
! AAGTCTGGATTAGGTAGCGG+AGG - chr6.1:72343950-72343969 MS.gene59999:CDS 50.0%
!! ACGCACTGATTGGGAGAAAG+AGG - chr6.1:72345621-72345640 MS.gene59999:CDS 50.0%
ACCTCTCTCTGGTGCTTCCA+TGG - chr6.1:72342317-72342336 MS.gene59999:CDS 55.0%
GCAAGGAATGGCAAGTGCCT+TGG - chr6.1:72343595-72343614 MS.gene59999:CDS 55.0%
GGCTCCCCTCGCGATTATTT+GGG - chr6.1:72343709-72343728 MS.gene59999:intron 55.0%
! AACTCGGGGCTGGTAATCCA+CGG - chr6.1:72344660-72344679 MS.gene59999:intron 55.0%
! CGACAACTTGGTGAGCAGCT+TGG - chr6.1:72344248-72344267 MS.gene59999:CDS 55.0%
! TAATCCACGGGCTGCACGTT+TGG - chr6.1:72344673-72344692 MS.gene59999:intron 55.0%
! TATGATCCAGGCACCGCTAG+AGG - chr6.1:72345344-72345363 MS.gene59999:intron 55.0%
CGGCTCCCCTCGCGATTATT+TGG - chr6.1:72343708-72343727 MS.gene59999:intron 60.0%
GTCTCGAATGAACTCGGGGC+TGG - chr6.1:72344650-72344669 MS.gene59999:intron 60.0%
! ACTCGGGGCTGGTAATCCAC+GGG - chr6.1:72344661-72344680 MS.gene59999:intron 60.0%
! GCACCGCTAGAGGAGTTGGT+TGG - chr6.1:72345354-72345373 MS.gene59999:intron 60.0%
!! GCCATGGAAGCACCAGAGAG+AGG + chr6.1:72342321-72342340 None:intergenic 60.0%
ACTGCCAAACGTGCAGCCCG+TGG + chr6.1:72344680-72344699 None:intergenic 65.0%
CCAACTCCTCTAGCGGTGCC+TGG + chr6.1:72345353-72345372 None:intergenic 65.0%
! CCAGGCACCGCTAGAGGAGT+TGG - chr6.1:72345350-72345369 MS.gene59999:intron 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 72342129 72345802 72342129 ID=MS.gene59999
chr6.1 mRNA 72342129 72345802 72342129 ID=MS.gene59999.t1;Parent=MS.gene59999
chr6.1 exon 72345554 72345802 72345554 ID=MS.gene59999.t1.exon1;Parent=MS.gene59999.t1
chr6.1 CDS 72345554 72345802 72345554 ID=cds.MS.gene59999.t1;Parent=MS.gene59999.t1
chr6.1 exon 72343785 72344335 72343785 ID=MS.gene59999.t1.exon2;Parent=MS.gene59999.t1
chr6.1 CDS 72343785 72344335 72343785 ID=cds.MS.gene59999.t1;Parent=MS.gene59999.t1
chr6.1 exon 72343579 72343665 72343579 ID=MS.gene59999.t1.exon3;Parent=MS.gene59999.t1
chr6.1 CDS 72343579 72343665 72343579 ID=cds.MS.gene59999.t1;Parent=MS.gene59999.t1
chr6.1 exon 72343418 72343474 72343418 ID=MS.gene59999.t1.exon4;Parent=MS.gene59999.t1
chr6.1 CDS 72343418 72343474 72343418 ID=cds.MS.gene59999.t1;Parent=MS.gene59999.t1
chr6.1 exon 72343050 72343288 72343050 ID=MS.gene59999.t1.exon5;Parent=MS.gene59999.t1
chr6.1 CDS 72343050 72343288 72343050 ID=cds.MS.gene59999.t1;Parent=MS.gene59999.t1
chr6.1 exon 72342459 72342577 72342459 ID=MS.gene59999.t1.exon6;Parent=MS.gene59999.t1
chr6.1 CDS 72342459 72342577 72342459 ID=cds.MS.gene59999.t1;Parent=MS.gene59999.t1
chr6.1 exon 72342289 72342375 72342289 ID=MS.gene59999.t1.exon7;Parent=MS.gene59999.t1
chr6.1 CDS 72342289 72342375 72342289 ID=cds.MS.gene59999.t1;Parent=MS.gene59999.t1
chr6.1 exon 72342129 72342188 72342129 ID=MS.gene59999.t1.exon8;Parent=MS.gene59999.t1
chr6.1 CDS 72342129 72342188 72342129 ID=cds.MS.gene59999.t1;Parent=MS.gene59999.t1
Gene Sequence

>MS.gene59999

ATGTCTCTTGATTCTCCATTGATTGTTGAAGAAACAAAACAAACCAACAAGAAAGAAGAAGATAGAAAAGATTTGGTTGAAGAAGTGAAGAAACAGTTATGGCTATCAGGGCCATTGATATCAGTTACACTTTTAAATTTTGGTATCAATCTTATTTCAGTTATGTTTGTTGGTCATCTTGGTGAGTTACCTCTCTCTGGTGCTTCCATGGCTACTTCTTTTGCTTCTGTCACTGGTTTCAGTTTATTGGTATGTTTTTCTCTGCTTCCCTATCAAACTTGTTCTCTTCATCATTATTGTTAGCTGGATATTTTTTTTTTCTTGGTAGCAGTATAAGTGAGTATTATTAATATGTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATGTATGTATGTGTGTGTGTGTGTGTGTGTTACACATGAGTGGAAGACAAACGGGGAAATAGGCTACGCTGCTAAGATTTTTTAAAGGGCAAAACCAATCTTATGAAGCACGACATTTATGAACCTAGGAAACATTAATGCGAGTTTGTGTTTGAAGTATGGTTAGAGGTTGGGTCTAGCGTACGAGACTAAGAGTTGTCCACATGCAGTGTGTGAGAGTGATTGATGATGGTAATAGCCATTTATGACAAATCAATTTTTGTTTTGATAGCTATTTGTGATCAATCATTATTTGAATCTTTGCTATAAAGATGTGTTTACATATAGTGTTTTCTTGTGATTGACTATGGTAATAGTCACTTACAACGAATCAATGTTTGAATCTCTACTGTAAAGACGATTGACATTGGTGGAAGGATAGATGTCAACATTGATTGACACTGGTTGAAGGATGGATAGATGACAAAATCTGGAAAAATGGTTGAATGAGAATTATCTTATGGTCCACCGTCCACATAACAATTTACAAAAATGTCTTTTTAAGGAAATAGTTGAGTTTCATGGATTAAATTTTCAACCAAGTTTTTCAACTGTTGTCACTATCATGCTGTCTTTGTGATTATGGTTACATCGCGATTTTTTTCCAGCAGAAAATCAGTACCCATAAATATGTTTGATGCAGGCGCAGTTGTAATGCTCAAGAACCATGTTTTCAATACTCTATTAGAATAAGCAGACTCCCCTTTTCCCATTACCTCTGATTTCTAAGACTAACCCTATTCATAATAATTTTATTACTCAAACTTAAATTTATGACCAGATAATGAATAACTATCTTTGGTTTGTCAGTTAATTTGTTTTTACTCAAATTATTAGTCAAGTTTAAATAGGATACAAGATATTGTAAGCTTTAGGTCTTTTTGCCACGGTTCACTGAGACTTACCTCTTGTCGCTTCGATTCAAGTCTTGTCACTTTGACTCGCTGAGATTCAGCTCTTGTCACTTCGTCCAAAAACTAACGTGGTTTATTTTAATTTTTATAGCAAGGAATGGCAAGTGCCTTGGACACATTATGTGGACAATCATATGGCGCGAAACAATACCGCATGTTAGGCGTACACATGCAAAGAGCAATGTTCATTCTGATGATCGTTGCGGCTCCCCTCGCGATTATTTGGGCAAACACAAGATCCATTCTCATTTTCCTTGGCCAAGATTCTGAAATATCTACAGAAGCTGGCAGCTTTGCAAAGTTAATGGTTCCCTGCCTTTTTGCTTACGGTCTTCTACAATGTCTTAACAGATTCTTACAGACTCAAAATATTGTATTTCCAATGATGTTTAGCTCCGCGATTACGACATTACTTCATATTCCTCTATGTTGGATAATGGTATACAAGTCTGGATTAGGTAGCGGAGGAGCTGCCATAGCAAGTTCTATATCCTATTGGATCAACGTTACCATACTCGCACTCTATGTCAAGTTTTCTCCTTCGTGTAAAAAAACATGGACTGGTTTTTCTAAAGAAGCATTTGCACTGAACAATATCCCAATTTTCCTGAAGCTTGCCATTCCTTCAGCTGTAATGGTTTGGTAATTGCCTTCTCTAGTACTTAAGTACTACATCATGCAACATATTATAATAGTTTCATTTCTCTTTAGAGAGATTCTAATGCTGTTTCCATTTTTATTTCCGACAACTTGGTGAGCAGCTTGGAAATGTGGTCATTTGAATTAATGGTTCTCCTTTCCGGTCTTCTTCCAAATCCAAAGTTGGAAACATCAGTGCTTTCTATCAGGTTGGTTTCATATTCAAGATCCTCTTCTATATTATTTTGACTGTATTATTATTAAGATTATTATGATTTTCACTAACCTTTTGTTGGTGACTTTGTTTTGTCAGTTTGAATACATCAGCACTTGTTTGGATGATCCCCTTTGGACTTAGCGGAGCTATAAGGTTAGTTTTCTCAGTTTTTATGCAGTTTTGTATTCAGTGGCAGTCTCTTTCTTGTTTTGCATGTTAAGAAAAATTCCATTGTTTTAGTTTGTGTATGTAGTTTCATTAATGCTTGAATGACTCTTGCAGCATTCGTGTCTCGAATGAACTCGGGGCTGGTAATCCACGGGCTGCACGTTTGGCAGTGTATGTCGTTGTAGTGATAGCCGTTATCGAGAGCATCGTAGTTGGAGCTGTGATTATATTAATTCGCAATATATGGGGATATGCTTATAGCAATGAAGAAGAAGTTGTCAAATATGTAGCAATTATGTTGCCTATTATTGCAGTATCCAACTTTCTGGATGGACTACAATGTGTTCTTTCAGGTTTCTCTTCTTCCCAATAACTTTTAATTTCTTTCTTCATAGAGACTGAGTCAAAAACAACGATAGAGACAAATGGGAGCTTCTAATATATATCATACAAAAGATGGTACTTGCAATAGATGCTAAAGCTTTTAAGTAGTGTAGGTAAGAAAATAATTAGAAGTTTAATTTTGTAATTACATATTGGATATGATCACAGTTACTAATAAGTGGATAGGTCGCTCAAACGTAGCGAAACTTGAGCATGATTATTAGAAAATGTGTTGTTCAGGGTTAATCTTGTAAATCGAACCGTAGTATCTGAATACAAGTTGTATTCTATAAACCCTAAAGCTTGATTATTAGAAAGGTATTGCAGCCACTATGATAAAAAATCATGTCTTATCTATTTGCGTTGTTTTCGTATCTTTTACTTCTAATATGGTCTGTTGTTCTAACAATGCAAATGATATCCTTCTTAACTATGATCCAGGCACCGCTAGAGGAGTTGGTTGGCAAAAAATCGGTGCATATGTCAATCTCGGGTCATATTATTTAGTCGGGATTCCAGCAGCCGTTGTATTAGCTTTTGTATTGCATGTTGGCGGGAAGGTAAATAAATGTTGTTCAGTTTTTCAAAAAATTGCTAACATATGATTTGGTTCAACATGGTAATTATAATTCTTATAATGTAGGGACTGTGGCTGGGGATCATATGTGCACTCGTTGTTCAAGTGCTTTCTCTTACGATCATTACAATACGCACTGATTGGGAGAAAGAGGTGAATAATTTCTTCATGCTTCCTTAACGATCTCTTTCATCCTTTGATAAATTTTTAGATATTGACATGCCTTTATTTATTTCTGATTACTTTTATTCAGGCAAAGAAGGCTAATGATAGAGTTTATGATTCAATAACAACAGAGAGCTTAGTCTCATGA
Protein sequence

>MS.gene59999.t1

MSLDSPLIVEETKQTNKKEEDRKDLVEEVKKQLWLSGPLISVTLLNFGINLISVMFVGHLGELPLSGASMATSFASVTGFSLLQGMASALDTLCGQSYGAKQYRMLGVHMQRAMFILMIVAAPLAIIWANTRSILIFLGQDSEISTEAGSFAKLMVPCLFAYGLLQCLNRFLQTQNIVFPMMFSSAITTLLHIPLCWIMVYKSGLGSGGAAIASSISYWINVTILALYVKFSPSCKKTWTGFSKEAFALNNIPIFLKLAIPSAVMVCLEMWSFELMVLLSGLLPNPKLETSVLSISLNTSALVWMIPFGLSGAISIRVSNELGAGNPRAARLAVYVVVVIAVIESIVVGAVIILIRNIWGYAYSNEEEVVKYVAIMLPIIAVSNFLDGLQCVLSGTARGVGWQKIGAYVNLGSYYLVGIPAAVVLAFVLHVGGKGLWLGIICALVVQVLSLTIITIRTDWEKEAKKANDRVYDSITTESLVS