AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71750.t1 MTR_1g109060 97.783 451 10 0 1 451 1 451 0.0 883
MS.gene71750.t1 MTR_1g109060 95.064 466 23 0 1 466 1 466 0.0 868
MS.gene71750.t1 MTR_1g108990 89.357 451 47 1 1 450 1 451 0.0 786
MS.gene71750.t1 MTR_1g108840 58.696 460 180 1 1 450 8 467 0.0 571
MS.gene71750.t1 MTR_7g082810 52.667 450 209 1 1 450 1 446 6.12e-169 484
MS.gene71750.t1 MTR_6g004220 51.020 441 215 1 22 461 21 461 7.60e-160 461
MS.gene71750.t1 MTR_6g004220 51.253 439 213 1 22 459 28 466 4.76e-159 460
MS.gene71750.t1 MTR_6g081410 48.584 459 229 2 7 463 13 466 1.08e-147 430
MS.gene71750.t1 MTR_6g081780 47.277 459 235 2 7 463 13 466 5.24e-144 421
MS.gene71750.t1 MTR_7g082800 51.948 385 185 0 83 467 1 385 1.33e-140 409
MS.gene71750.t1 MTR_6g066380 46.638 461 244 1 5 463 8 468 6.96e-136 400
MS.gene71750.t1 MTR_6g081810 45.098 459 226 1 5 463 8 440 6.31e-133 392
MS.gene71750.t1 MTR_6g004220 52.432 370 175 1 22 390 28 397 9.54e-133 391
MS.gene71750.t1 MTR_1g108810 48.624 436 222 1 23 458 33 466 5.71e-131 388
MS.gene71750.t1 MTR_6g081300 45.434 438 234 1 13 450 4 436 3.14e-128 380
MS.gene71750.t1 MTR_6g081240 42.922 438 248 2 23 459 9 445 2.22e-122 365
MS.gene71750.t1 MTR_8g106670 41.463 451 263 1 15 465 3 452 7.17e-118 354
MS.gene71750.t1 MTR_6g081310 43.981 432 230 2 42 461 14 445 1.15e-116 351
MS.gene71750.t1 MTR_6g081390 40.774 439 259 1 24 461 12 450 2.65e-110 334
MS.gene71750.t1 MTR_6g081400 39.408 439 265 1 24 461 15 453 4.04e-108 329
MS.gene71750.t1 MTR_6g004220 53.979 289 132 1 22 309 28 316 5.90e-105 316
MS.gene71750.t1 MTR_2g088400 35.240 437 283 0 25 461 53 489 5.30e-91 286
MS.gene71750.t1 MTR_4g048000 35.402 435 281 0 25 459 65 499 4.16e-90 284
MS.gene71750.t1 MTR_2g078930 35.172 435 282 0 23 457 42 476 3.87e-89 281
MS.gene71750.t1 MTR_2g078960 34.590 451 295 0 2 452 11 461 1.06e-88 279
MS.gene71750.t1 MTR_2g078970 35.047 428 278 0 23 450 30 457 3.78e-86 273
MS.gene71750.t1 MTR_2g079020 35.514 428 276 0 23 450 36 463 4.02e-86 273
MS.gene71750.t1 MTR_2g088400 35.802 405 260 0 25 429 53 457 5.66e-84 266
MS.gene71750.t1 MTR_2g022980 35.797 433 270 2 32 460 56 484 6.98e-84 267
MS.gene71750.t1 MTR_5g033100 35.111 450 285 2 22 471 54 496 1.18e-81 262
MS.gene71750.t1 MTR_8g069470 34.895 427 273 3 22 446 48 471 4.76e-76 247
MS.gene71750.t1 MTR_5g090290 34.426 427 276 2 37 461 59 483 2.44e-75 247
MS.gene71750.t1 MTR_8g063590 35.096 416 267 3 25 438 54 468 2.65e-75 245
MS.gene71750.t1 MTR_5g032720 34.247 438 286 2 25 461 37 473 8.30e-73 238
MS.gene71750.t1 MTR_1g021740 32.892 453 296 2 25 470 36 487 2.33e-71 234
MS.gene71750.t1 MTR_5g067460 30.769 429 293 2 23 449 54 480 2.24e-70 234
MS.gene71750.t1 MTR_7g087400 31.458 480 315 4 1 472 6 479 3.21e-70 231
MS.gene71750.t1 MTR_5g010830 32.135 445 294 3 23 462 64 505 6.84e-70 232
MS.gene71750.t1 MTR_3g111020 30.169 474 319 4 8 472 35 505 1.11e-68 229
MS.gene71750.t1 MTR_5g032750 34.542 469 286 11 1 461 18 473 1.56e-68 227
MS.gene71750.t1 MTR_1g101500 30.586 461 303 4 24 470 64 521 5.78e-68 227
MS.gene71750.t1 MTR_7g087410 32.426 441 295 2 24 462 31 470 9.98e-68 225
MS.gene71750.t1 MTR_6g043810 30.979 439 294 3 7 436 5 443 2.66e-67 224
MS.gene71750.t1 MTR_6g043810 30.979 439 294 3 7 436 15 453 5.00e-67 224
MS.gene71750.t1 MTR_6g088805 30.655 473 296 7 1 461 9 461 1.97e-66 221
MS.gene71750.t1 MTR_7g087370 30.417 480 291 5 1 472 6 450 1.08e-64 216
MS.gene71750.t1 MTR_0039s0080 28.904 429 299 2 24 449 38 463 1.06e-62 213
MS.gene71750.t1 MTR_5g087930 34.033 429 253 8 49 470 51 456 3.12e-62 209
MS.gene71750.t1 MTR_7g087430 34.301 379 248 1 83 461 1 378 6.48e-62 207
MS.gene71750.t1 MTR_1g100180 31.828 443 300 1 21 463 40 480 3.68e-61 207
MS.gene71750.t1 MTR_7g087410 32.984 382 253 2 83 462 1 381 1.07e-60 204
MS.gene71750.t1 MTR_3g099720 29.977 437 305 1 25 461 42 477 1.24e-59 203
MS.gene71750.t1 MTR_8g102430 28.894 443 294 3 1 443 1 422 1.94e-59 202
MS.gene71750.t1 MTR_6g047640 29.464 448 295 2 21 468 28 454 1.67e-58 200
MS.gene71750.t1 MTR_6g047640 30.580 448 309 1 21 468 28 473 4.12e-58 199
MS.gene71750.t1 MTR_3g099700 29.764 467 320 4 1 465 27 487 9.69e-58 199
MS.gene71750.t1 MTR_6g047610 29.911 448 311 2 21 468 28 472 1.62e-57 197
MS.gene71750.t1 MTR_4g027920 31.616 427 279 7 24 441 156 578 5.48e-56 196
MS.gene71750.t1 MTR_6g027200 30.786 471 308 7 9 471 25 485 3.08e-54 189
MS.gene71750.t1 MTR_6g027190 32.043 465 303 7 1 460 3 459 2.62e-53 186
MS.gene71750.t1 MTR_2g435930 30.562 445 280 6 23 449 18 451 4.59e-53 186
MS.gene71750.t1 MTR_6g047590 31.159 414 282 2 21 434 28 438 8.37e-53 185
MS.gene71750.t1 MTR_2g078990 33.887 301 192 1 165 458 1 301 8.21e-52 178
MS.gene71750.t1 MTR_5g011540 29.493 434 292 5 24 449 43 470 1.71e-46 169
MS.gene71750.t1 MTR_5g090280 28.571 406 256 3 83 461 1 399 2.62e-42 155
MS.gene71750.t1 MTR_2g079030 37.234 188 118 0 263 450 319 506 8.97e-33 131
MS.gene71750.t1 MTR_7g007430 50.000 62 31 0 310 371 16 77 1.40e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71750.t1 AT1G71140 60.579 449 173 2 2 449 5 450 0.0 559
MS.gene71750.t1 AT1G15150 55.773 459 201 1 15 471 21 479 0.0 533
MS.gene71750.t1 AT1G15160 54.989 471 205 2 8 471 9 479 0.0 530
MS.gene71750.t1 AT1G15170 56.025 473 198 3 2 467 9 478 0.0 528
MS.gene71750.t1 AT1G15180 56.304 460 194 2 15 467 20 479 1.27e-175 501
MS.gene71750.t1 AT2G04080 48.712 466 235 2 1 462 1 466 5.96e-152 441
MS.gene71750.t1 AT2G04080 48.590 461 235 1 1 459 1 461 1.26e-151 440
MS.gene71750.t1 AT2G04100 47.908 478 237 4 1 466 1 478 3.00e-151 439
MS.gene71750.t1 AT2G04100 48.172 465 236 2 1 460 1 465 3.62e-151 439
MS.gene71750.t1 AT2G04050 49.356 466 232 2 1 462 1 466 2.45e-149 434
MS.gene71750.t1 AT1G66760 47.682 453 233 1 7 459 14 462 5.15e-149 433
MS.gene71750.t1 AT1G15170 57.660 359 150 1 111 467 1 359 9.29e-149 429
MS.gene71750.t1 AT1G15150 56.198 363 157 1 111 471 1 363 9.67e-149 429
MS.gene71750.t1 AT1G66760 47.788 452 232 1 7 458 14 461 2.16e-148 432
MS.gene71750.t1 AT2G04090 48.132 455 231 1 1 450 1 455 2.32e-148 432
MS.gene71750.t1 AT2G04070 48.060 464 238 2 1 462 1 463 1.20e-147 430
MS.gene71750.t1 AT2G04040 47.854 466 239 2 1 462 1 466 3.16e-147 429
MS.gene71750.t1 AT1G66780 49.011 455 232 0 7 461 17 471 4.91e-146 426
MS.gene71750.t1 AT1G64820 48.364 428 221 0 23 450 27 454 4.14e-142 417
MS.gene71750.t1 AT5G52450 46.377 483 244 3 6 473 1 483 5.26e-137 403
MS.gene71750.t1 AT1G73700 47.427 447 235 0 24 470 23 469 1.56e-136 402
MS.gene71750.t1 AT2G34360 44.632 475 241 5 9 473 16 478 9.70e-129 382
MS.gene71750.t1 AT1G66760 47.656 384 197 1 7 390 14 393 8.94e-122 361
MS.gene71750.t1 AT1G15180 57.500 280 119 0 111 390 1 280 3.77e-111 335
MS.gene71750.t1 AT1G66760 49.102 334 170 0 126 459 1 334 2.91e-110 330
MS.gene71750.t1 AT2G34360 39.241 474 226 4 9 473 16 436 8.43e-107 324
MS.gene71750.t1 AT3G23550 35.938 448 283 2 7 450 9 456 1.93e-92 288
MS.gene71750.t1 AT3G23560 35.730 445 285 1 7 450 20 464 3.15e-90 283
MS.gene71750.t1 AT3G21690 35.080 439 285 0 25 463 52 490 1.83e-87 277
MS.gene71750.t1 AT1G61890 33.941 439 290 0 25 463 47 485 1.96e-87 276
MS.gene71750.t1 AT1G61890 34.174 436 287 0 25 460 47 482 8.02e-87 275
MS.gene71750.t1 AT1G11670 34.396 439 288 0 25 463 50 488 1.30e-86 275
MS.gene71750.t1 AT1G61890 34.204 421 277 0 9 429 31 451 1.30e-79 255
MS.gene71750.t1 AT4G21910 34.222 450 287 3 25 470 57 501 3.53e-79 255
MS.gene71750.t1 AT4G21910 34.222 450 287 3 25 470 57 501 3.53e-79 255
MS.gene71750.t1 AT4G21910 33.556 450 290 3 25 470 55 499 5.97e-78 252
MS.gene71750.t1 AT4G21910 33.556 450 290 3 25 470 55 499 5.97e-78 252
MS.gene71750.t1 AT4G21903 34.532 417 261 3 62 470 85 497 2.87e-76 248
MS.gene71750.t1 AT3G59030 33.827 473 300 6 10 473 34 502 1.13e-75 246
MS.gene71750.t1 AT4G21903 35.222 406 251 3 62 459 85 486 1.79e-75 246
MS.gene71750.t1 AT1G12950 32.802 439 294 1 22 460 64 501 2.35e-75 246
MS.gene71750.t1 AT1G23300 36.054 441 277 3 22 460 41 478 7.20e-75 244
MS.gene71750.t1 AT1G47530 35.294 425 274 1 22 446 32 455 4.32e-74 241
MS.gene71750.t1 AT3G26590 33.882 425 280 1 22 446 42 465 8.50e-74 241
MS.gene71750.t1 AT4G21903 34.010 394 252 2 83 472 1 390 9.83e-74 238
MS.gene71750.t1 AT5G38030 32.941 425 284 1 22 446 42 465 9.24e-73 238
MS.gene71750.t1 AT5G44050 32.222 450 300 3 25 470 40 488 6.36e-70 231
MS.gene71750.t1 AT1G71870 31.849 449 287 6 6 436 5 452 6.70e-69 228
MS.gene71750.t1 AT5G10420 32.715 431 285 2 9 439 26 451 5.80e-68 225
MS.gene71750.t1 AT1G58340 32.000 425 288 1 23 446 56 480 1.90e-67 225
MS.gene71750.t1 AT3G23560 33.766 385 254 1 7 390 20 404 2.82e-67 221
MS.gene71750.t1 AT4G29140 29.956 454 315 1 23 473 54 507 2.93e-67 224
MS.gene71750.t1 AT1G33090 31.278 454 307 2 7 460 22 470 5.16e-67 223
MS.gene71750.t1 AT1G33110 32.563 476 311 5 2 473 18 487 1.66e-66 222
MS.gene71750.t1 AT1G33100 32.379 454 302 2 7 460 19 467 2.26e-66 221
MS.gene71750.t1 AT5G65380 31.838 468 312 3 7 473 24 485 3.48e-65 218
MS.gene71750.t1 AT3G26590 33.676 389 251 2 83 471 1 382 1.89e-64 214
MS.gene71750.t1 AT5G19700 30.365 438 305 0 24 461 35 472 2.88e-64 216
MS.gene71750.t1 AT1G47530 35.714 364 233 1 83 446 1 363 5.33e-64 212
MS.gene71750.t1 AT5G52050 29.773 440 299 3 5 436 15 452 8.63e-64 215
MS.gene71750.t1 AT4G23030 35.238 420 259 5 23 435 30 443 1.19e-62 212
MS.gene71750.t1 AT2G38510 30.843 415 284 3 24 436 5 418 6.23e-62 209
MS.gene71750.t1 AT1G33080 31.278 454 306 3 8 460 22 470 3.37e-61 207
MS.gene71750.t1 AT1G33080 30.853 457 310 3 8 463 22 473 3.80e-61 207
MS.gene71750.t1 AT4G00350 32.360 445 295 3 21 463 84 524 3.45e-59 204
MS.gene71750.t1 AT5G49130 30.110 455 294 6 23 458 24 473 3.76e-57 197
MS.gene71750.t1 AT4G25640 33.014 418 278 1 21 438 30 445 1.18e-56 196
MS.gene71750.t1 AT4G25640 33.014 418 278 1 21 438 30 445 1.57e-56 196
MS.gene71750.t1 AT3G59030 32.817 387 250 5 10 390 34 416 2.19e-55 191
MS.gene71750.t1 AT4G25640 33.085 402 267 1 21 422 30 429 1.70e-54 189
MS.gene71750.t1 AT3G03620 29.158 463 313 5 8 461 16 472 5.12e-50 178
MS.gene71750.t1 AT3G03620 29.158 463 313 5 8 461 16 472 5.12e-50 178
MS.gene71750.t1 AT5G17700 30.263 456 305 6 1 449 8 457 4.40e-49 175
MS.gene71750.t1 AT5G17700 30.263 456 305 6 1 449 8 457 4.40e-49 175
MS.gene71750.t1 AT4G22790 27.586 435 302 5 23 449 28 457 7.53e-46 166
MS.gene71750.t1 AT1G33110 30.769 390 264 3 2 391 18 401 4.51e-45 162
MS.gene71750.t1 AT5G17700 28.463 397 271 6 1 390 8 398 1.44e-33 131
MS.gene71750.t1 AT2G04066 46.281 121 63 1 344 462 41 161 9.87e-30 114

Find 104 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCTGTTATATTGGGTTTC+TGG 0.056697 1.1:+77798355 MS.gene71750:CDS
GTCTTCCTCTATCTCTATTA+TGG 0.186111 1.1:+77796752 MS.gene71750:CDS
GAACTCCTAATCCTTCTTTC+TGG 0.192555 1.1:+77797571 MS.gene71750:CDS
AATTCCAATTGCTGTTATAT+TGG 0.215901 1.1:+77798347 MS.gene71750:CDS
AGTTTACATGGCACCCTTTC+AGG 0.234134 1.1:+77798139 MS.gene71750:CDS
CACCTTCCGGGAGGCGAAAA+TGG 0.238801 1.1:-77798029 None:intergenic
AGTTTGTAAAACCTGTTATA+AGG 0.276471 1.1:-77798449 None:intergenic
ATTCCAATTGCTGTTATATT+GGG 0.276947 1.1:+77798348 MS.gene71750:CDS
ATCTCTATTATGGATCTTCT+TGG 0.306738 1.1:+77796762 MS.gene71750:CDS
GCTGCTGAGCCAGTTGCTTC+TGG 0.311246 1.1:-77797818 None:intergenic
ATCTCTCTCTGTGGTGTCTC+TGG 0.340745 1.1:+77795391 MS.gene71750:CDS
ATACATAACCTAACACCTTC+CGG 0.341937 1.1:-77798042 None:intergenic
AATGATGATGGTTGGTCGTT+TGG 0.358959 1.1:+77795336 MS.gene71750:CDS
GTTTGCCTATGCAACGCTTC+AGG 0.367733 1.1:+77796867 MS.gene71750:CDS
TTCGCCTCCCGGAAGGTGTT+AGG 0.373320 1.1:+77798034 MS.gene71750:CDS
TTCCATCAGCAGGAATGATT+TGG 0.375335 1.1:+77797163 MS.gene71750:CDS
GAAGTTTCAAGCTGTGGGTT+TGG 0.377359 1.1:-77797601 None:intergenic
ACTCAATGCGGACAAGCTTA+TGG 0.385550 1.1:+77796664 MS.gene71750:CDS
AAACCCAATATAACAGCAAT+TGG 0.388406 1.1:-77798351 None:intergenic
ACAAATTATTTCAATGATGA+TGG 0.391749 1.1:+77795324 MS.gene71750:CDS
GAGGAAAAGGACTGTGGATT+GGG 0.392985 1.1:+77798388 MS.gene71750:CDS
GTTTGTAAAACCTGTTATAA+GGG 0.396382 1.1:-77798448 None:intergenic
AAACTTCAGTCTTATCCATA+TGG 0.405505 1.1:+77797617 MS.gene71750:CDS
GGTTTCTGGTTTGAGTTAAG+AGG 0.406704 1.1:+77798369 MS.gene71750:CDS
AAATCTGGATTAGGTTGCTT+AGG 0.409316 1.1:+77796994 MS.gene71750:CDS
TACATAACCTAACACCTTCC+GGG 0.417821 1.1:-77798041 None:intergenic
AGAGGTTGAAAATATGGAAA+AGG 0.418865 1.1:+77795174 None:intergenic
GAGGTTGAAAATATGGAAAA+GGG 0.419894 1.1:+77795175 None:intergenic
ACAGGTATTGCTAGAGGATC+TGG 0.427858 1.1:+77798273 MS.gene71750:intron
ATGGAGCCATTCCTTGGAAT+AGG 0.428034 1.1:+77797120 MS.gene71750:CDS
ATGATGATGGTTGGTCGTTT+GGG 0.428454 1.1:+77795337 MS.gene71750:CDS
AGAGGAAAAGGACTGTGGAT+TGG 0.429463 1.1:+77798387 MS.gene71750:CDS
ACCAGAGTTTCAAATGCATT+AGG 0.432096 1.1:+77797923 MS.gene71750:CDS
TTTCTATCGGTACTTCATAC+TGG 0.433954 1.1:+77797025 MS.gene71750:CDS
AGGATCTGGTTGGCAGAAGT+TGG 0.434457 1.1:+77798287 MS.gene71750:CDS
ATTTCAATGGAGCCATTCCT+TGG 0.438110 1.1:+77797114 MS.gene71750:CDS
GAAGACCAGAAAGAAGGATT+AGG 0.438439 1.1:-77797576 None:intergenic
TGGTTTGAGTTAAGAGGAAA+AGG 0.438724 1.1:+77798375 MS.gene71750:CDS
AGGAATGGCTCCATTGAAAT+CGG 0.440629 1.1:-77797111 None:intergenic
TCTCTATTATGGATCTTCTT+GGG 0.443745 1.1:+77796763 MS.gene71750:CDS
TGGTTGAACGTGATTATACT+TGG 0.443837 1.1:+77797045 MS.gene71750:CDS
AAGATCCATAATAGAGATAG+AGG 0.444599 1.1:-77796757 None:intergenic
CCACTGATTGTGAAGAAACT+CGG 0.461620 1.1:+77797085 MS.gene71750:CDS
CTGTGGATTGGGATACTTGT+GGG 0.475726 1.1:+77798399 MS.gene71750:CDS
GGTGGACTATGTCACATATA+TGG 0.479811 1.1:+77798084 MS.gene71750:CDS
CTATGCAACGCTTCAGGCAC+TGG 0.480090 1.1:+77796873 MS.gene71750:CDS
AACTCTCCTATTCCAAGGAA+TGG 0.484049 1.1:-77797126 None:intergenic
CGATACGCTATTCCATCAGC+AGG 0.488355 1.1:+77797153 MS.gene71750:CDS
CAGCTTCTTGTGAAATCAGA+GGG 0.489275 1.1:-77796813 None:intergenic
TACCAAATCATTCCTGCTGA+TGG 0.489588 1.1:-77797165 None:intergenic
GTTGCATAGGCAAACAGAGC+AGG 0.493831 1.1:-77796859 None:intergenic
TCCTAATGCATTTGAAACTC+TGG 0.496068 1.1:-77797924 None:intergenic
TATGACTGTTGCAGTTTCTG+AGG 0.496073 1.1:+77797988 MS.gene71750:CDS
AACTCGGGTTCCGATTTCAA+TGG 0.496663 1.1:+77797101 MS.gene71750:CDS
GACAAAGTGACAGCGATCAT+AGG 0.498614 1.1:-77795289 None:intergenic
ATTATTTCAATGATGATGGT+TGG 0.500723 1.1:+77795328 MS.gene71750:CDS
TATACAATACCAGAAGCAAC+TGG 0.503750 1.1:+77797809 MS.gene71750:CDS
GGATCTGGTTGGCAGAAGTT+GGG 0.512590 1.1:+77798288 MS.gene71750:CDS
GTTTCAAATGCATTAGGAGG+TGG 0.514556 1.1:+77797929 MS.gene71750:CDS
TTAGGAGCTGCACTTTCTAT+CGG 0.515655 1.1:+77797012 MS.gene71750:CDS
AAGGATATTTCAAGGAAGAC+AGG 0.516463 1.1:+77799143 MS.gene71750:CDS
GCACGGGAAAGGATATTTCA+AGG 0.516542 1.1:+77799135 MS.gene71750:CDS
TTATGTATTTAGCAATGAGC+AGG 0.518001 1.1:+77798057 MS.gene71750:CDS
CCTCTGATTTCACAAGAAGC+TGG 0.520359 1.1:+77796814 MS.gene71750:CDS
AGACTGAAGTTTCAAGCTGT+GGG 0.523216 1.1:-77797606 None:intergenic
CCGAGTTTCTTCACAATCAG+TGG 0.527873 1.1:-77797085 None:intergenic
TTGGAAGAAGACCAGAAAGA+AGG 0.534109 1.1:-77797582 None:intergenic
CACTGATTGTGAAGAAACTC+GGG 0.536690 1.1:+77797086 MS.gene71750:CDS
CCAGCTTCTTGTGAAATCAG+AGG 0.537156 1.1:-77796814 None:intergenic
AAGACTGAAGTTTCAAGCTG+TGG 0.540131 1.1:-77797607 None:intergenic
TATTATGGATCTTCTTGGGA+AGG 0.553953 1.1:+77796767 MS.gene71750:CDS
CAGTGCCTGAAGCGTTGCAT+AGG 0.557039 1.1:-77796872 None:intergenic
ATGGGGTGTATTTGTTCAAG+AGG 0.559648 1.1:+77795240 MS.gene71750:CDS
ACAGACAATCGCGCTGCTTG+TGG 0.562468 1.1:-77797956 None:intergenic
GTTATAGTAGATAGTTTACA+TGG 0.564425 1.1:+77798127 MS.gene71750:CDS
AGTTAAGAGGAAAAGGACTG+TGG 0.570117 1.1:+77798382 MS.gene71750:CDS
TTAGAGAAAGACAGAGAAGG+TGG 0.570704 1.1:+77795202 MS.gene71750:CDS
TTGGGAGCATATGTGAACCT+TGG 0.571235 1.1:+77798306 MS.gene71750:CDS
AGGCAATCAAAGCACGGGAA+AGG 0.580536 1.1:+77799124 MS.gene71750:intron
ATTGCAGGCAATCAAAGCAC+GGG 0.588180 1.1:+77799119 MS.gene71750:intron
GAAAGAACTCTCCTATTCCA+AGG 0.590275 1.1:-77797131 None:intergenic
AGAGTTTCAAATGCATTAGG+AGG 0.596053 1.1:+77797926 MS.gene71750:CDS
TAGCAAAAGTGCTTGACAGA+AGG 0.596478 1.1:-77798424 None:intergenic
TTGTTAGAGAAAGACAGAGA+AGG 0.598771 1.1:+77795199 MS.gene71750:CDS
TTATATACAGGTATTGCTAG+AGG 0.605206 1.1:+77798267 MS.gene71750:intron
GTTCAAATGACCACCACTCA+AGG 0.606561 1.1:-77797552 None:intergenic
TAGCAATGAGCAGGATGTGG+TGG 0.608741 1.1:+77798066 MS.gene71750:CDS
ACAGAGGAACTTATAACAAG+AGG 0.610630 1.1:-77796928 None:intergenic
GTGGTTCAAGAAGCATAACA+TGG 0.612250 1.1:+77795221 MS.gene71750:CDS
GATTGCAGGCAATCAAAGCA+CGG 0.614760 1.1:+77799118 MS.gene71750:intron
AAGCAACTGGCTCAGCAGCA+AGG 0.628073 1.1:+77797822 MS.gene71750:CDS
CTTCCGGGAGGCGAAAATGG+TGG 0.628733 1.1:-77798026 None:intergenic
CAGAGCAGGAATCATGCACA+TGG 0.633097 1.1:-77796845 None:intergenic
TGGTTCAAGAAGCATAACAT+GGG 0.635705 1.1:+77795222 MS.gene71750:CDS
GCTATTGCTATCTCTCTCTG+TGG 0.641720 1.1:+77795382 MS.gene71750:CDS
ATTTAGCAATGAGCAGGATG+TGG 0.642366 1.1:+77798063 MS.gene71750:CDS
ATAACATTTAGACTTATCAG+AGG 0.656211 1.1:-77798109 None:intergenic
ATGGAAGCACAGGGTAACAG+AGG 0.669450 1.1:-77796944 None:intergenic
GTATTGCTAGAGGATCTGGT+TGG 0.685433 1.1:+77798277 MS.gene71750:CDS
ACTGTGGATTGGGATACTTG+TGG 0.687788 1.1:+77798398 MS.gene71750:CDS
AAAAGCTACATGGAAGCACA+GGG 0.694846 1.1:-77796953 None:intergenic
GGTTCAAGAAGCATAACATG+GGG 0.725878 1.1:+77795223 MS.gene71750:CDS
ATAACCTAACACCTTCCGGG+AGG 0.742045 1.1:-77798038 None:intergenic
TGTGCACTTGAAACTCAATG+CGG 0.793392 1.1:+77796652 MS.gene71750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACTTTATGAATTTTTTTT+AGG - chr1.1:77796355-77796374 None:intergenic 10.0%
!! ATACCTGTATATAAATATAA+TGG - chr1.1:77798261-77798280 None:intergenic 15.0%
!! TAATAGTATGAAAATCTAAT+AGG + chr1.1:77798901-77798920 MS.gene71750:intron 15.0%
!!! ATAATAAGTAACATTGATTT+TGG - chr1.1:77796559-77796578 None:intergenic 15.0%
!!! TAATGAGTAAACAATTATTT+TGG - chr1.1:77796056-77796075 None:intergenic 15.0%
!!! TATTGAATGTTTTTTTTTGT+TGG + chr1.1:77796438-77796457 MS.gene71750:intron 15.0%
!!! TTCTTCTATTAGTAATTTTA+TGG - chr1.1:77795962-77795981 None:intergenic 15.0%
!!! TTGTTTTTCATTCATATAAT+TGG + chr1.1:77797724-77797743 MS.gene71750:intron 15.0%
!! AAATGCAATTAATTTCGTAT+AGG - chr1.1:77796090-77796109 None:intergenic 20.0%
!! AATAAGTAATAACTACCAAA+CGG - chr1.1:77796383-77796402 None:intergenic 20.0%
!! AATATGTAAGAAACAAATCA+TGG - chr1.1:77797519-77797538 None:intergenic 20.0%
!! ACAAATTATTTCAATGATGA+TGG + chr1.1:77795324-77795343 MS.gene71750:CDS 20.0%
!! AGTCCATTATATTTATATAC+AGG + chr1.1:77798255-77798274 MS.gene71750:intron 20.0%
!! GCAAAGCAATATAAAAAATT+TGG + chr1.1:77796688-77796707 MS.gene71750:CDS 20.0%
!! GCAATCAATTTCATATTAAT+TGG - chr1.1:77796588-77796607 None:intergenic 20.0%
!! TAAAAGGTTAGATATAAGAT+AGG + chr1.1:77795813-77795832 MS.gene71750:intron 20.0%
!! TTTGTAATTTCAATACATTC+AGG + chr1.1:77798737-77798756 MS.gene71750:intron 20.0%
!!! ACATACCTAATATAAGTTTT+GGG + chr1.1:77795643-77795662 MS.gene71750:intron 20.0%
!!! TTAGTTTTTAAATCTGGATT+AGG + chr1.1:77796985-77797004 MS.gene71750:CDS 20.0%
!!! TTTGGTAGTTATTACTTATT+AGG + chr1.1:77796383-77796402 MS.gene71750:intron 20.0%
! ACATTCAATATCAAACTTGT+TGG - chr1.1:77795922-77795941 None:intergenic 25.0%
! AGAATCTTAATAAGATAGCA+TGG - chr1.1:77799043-77799062 None:intergenic 25.0%
! AGTTTGTAAAACCTGTTATA+AGG - chr1.1:77798452-77798471 None:intergenic 25.0%
! ATAACATTTAGACTTATCAG+AGG - chr1.1:77798112-77798131 None:intergenic 25.0%
! ATAAGAAAGACTAAGAAAAG+TGG - chr1.1:77797650-77797669 None:intergenic 25.0%
! CAAATAATAAATGAGGTATG+AGG + chr1.1:77797353-77797372 MS.gene71750:intron 25.0%
! GTTATAGTAGATAGTTTACA+TGG + chr1.1:77798127-77798146 MS.gene71750:CDS 25.0%
! GTTTGTAAAACCTGTTATAA+GGG - chr1.1:77798451-77798470 None:intergenic 25.0%
! TTTGTACATATCAAACAGTT+TGG + chr1.1:77796120-77796139 MS.gene71750:intron 25.0%
!! AATTCCAATTGCTGTTATAT+TGG + chr1.1:77798347-77798366 MS.gene71750:CDS 25.0%
!! ATTCCAATTGCTGTTATATT+GGG + chr1.1:77798348-77798367 MS.gene71750:CDS 25.0%
!! CACATACCTAATATAAGTTT+TGG + chr1.1:77795642-77795661 MS.gene71750:intron 25.0%
!! CATTCAATATCAAACTTGTT+GGG - chr1.1:77795921-77795940 None:intergenic 25.0%
!! TATAACAGGTTTTACAAACT+GGG + chr1.1:77798452-77798471 MS.gene71750:intron 25.0%
!! TTATAACAGGTTTTACAAAC+TGG + chr1.1:77798451-77798470 MS.gene71750:intron 25.0%
!!! ACACAAATTTTAAGACACAA+AGG - chr1.1:77797680-77797699 None:intergenic 25.0%
!!! ATTATTTCAATGATGATGGT+TGG + chr1.1:77795328-77795347 MS.gene71750:CDS 25.0%
!!! ATTCAATATCAAACTTGTTG+GGG - chr1.1:77795920-77795939 None:intergenic 25.0%
!!! TGAATGTGTAATTTGTTTGT+TGG + chr1.1:77795935-77795954 MS.gene71750:intron 25.0%
!!! TGTTATTTTGATTCATTCAG+AGG - chr1.1:77796215-77796234 None:intergenic 25.0%
!!! TTCGATTAGTTAGTTTTGTT+GGG + chr1.1:77795588-77795607 MS.gene71750:intron 25.0%
!!! TTGAAGTTTTGATACATTGA+AGG + chr1.1:77795998-77796017 MS.gene71750:intron 25.0%
!!! TTTCGATTAGTTAGTTTTGT+TGG + chr1.1:77795587-77795606 MS.gene71750:intron 25.0%
!!! TTTTTTTTAGGATGAAGAGA+TGG - chr1.1:77796343-77796362 None:intergenic 25.0%
AAAAGTGGCATTATACCATA+TGG - chr1.1:77797635-77797654 None:intergenic 30.0%
AAACCCAATATAACAGCAAT+TGG - chr1.1:77798354-77798373 None:intergenic 30.0%
AAGATCCATAATAGAGATAG+AGG - chr1.1:77796760-77796779 None:intergenic 30.0%
ACAAATAAAAGACACACTTG+AGG + chr1.1:77798709-77798728 MS.gene71750:intron 30.0%
ATCAAGTAGTTGCAAGTATA+TGG + chr1.1:77797326-77797345 MS.gene71750:intron 30.0%
ATCTCTATTATGGATCTTCT+TGG + chr1.1:77796762-77796781 MS.gene71750:CDS 30.0%
CAAATAAAAGACACACTTGA+GGG + chr1.1:77798710-77798729 MS.gene71750:intron 30.0%
CCAAATGAAACAATATGAGA+CGG + chr1.1:77797447-77797466 MS.gene71750:intron 30.0%
GCAATTAATTTCGTATAGGT+TGG - chr1.1:77796086-77796105 None:intergenic 30.0%
TACTAATAGAAGACACATTC+AGG + chr1.1:77796471-77796490 MS.gene71750:intron 30.0%
TCTCTATTATGGATCTTCTT+GGG + chr1.1:77796763-77796782 MS.gene71750:CDS 30.0%
TGCAACTACTTGATAAATGA+GGG - chr1.1:77797320-77797339 None:intergenic 30.0%
TGCATGAATGAATTATGCTA+TGG + chr1.1:77798221-77798240 MS.gene71750:intron 30.0%
TGGAATTCCAAAAACATAGT+AGG - chr1.1:77798334-77798353 None:intergenic 30.0%
TTATGTATTTAGCAATGAGC+AGG + chr1.1:77798057-77798076 MS.gene71750:CDS 30.0%
TTGATAAATGAGGGTAACAT+CGG - chr1.1:77797311-77797330 None:intergenic 30.0%
TTGCAACTACTTGATAAATG+AGG - chr1.1:77797321-77797340 None:intergenic 30.0%
TTTAATACTAGTGCCAAATG+TGG - chr1.1:77798526-77798545 None:intergenic 30.0%
TTTGTGCATATCAAACAGTT+TGG + chr1.1:77796622-77796641 MS.gene71750:intron 30.0%
! AAACTTCAGTCTTATCCATA+TGG + chr1.1:77797617-77797636 MS.gene71750:CDS 30.0%
! ATTGTTGAGTTCAAGTTTGA+GGG + chr1.1:77795778-77795797 MS.gene71750:intron 30.0%
! GACTTTATCTCTTTTTAACG+TGG - chr1.1:77798828-77798847 None:intergenic 30.0%
! TCTTAAGGCATTAGGTATAT+AGG - chr1.1:77795842-77795861 None:intergenic 30.0%
! TGGTGGACAAATAATAAATG+AGG + chr1.1:77797346-77797365 MS.gene71750:intron 30.0%
! TTATATACAGGTATTGCTAG+AGG + chr1.1:77798267-77798286 MS.gene71750:intron 30.0%
! TTGAAGTTCTGATTCATTGA+AGG + chr1.1:77796501-77796520 MS.gene71750:intron 30.0%
! TTTCATACTATTAGCTTGAC+AGG - chr1.1:77798894-77798913 None:intergenic 30.0%
! TTTTACAAACTGGGAAAAAC+AGG + chr1.1:77798461-77798480 MS.gene71750:intron 30.0%
!!! ACCTAATATAAGTTTTGGGT+GGG + chr1.1:77795647-77795666 MS.gene71750:intron 30.0%
!!! ACTTGTGTTTTTAGAGTAAG+CGG - chr1.1:77798804-77798823 None:intergenic 30.0%
!!! TACCTAATATAAGTTTTGGG+TGG + chr1.1:77795646-77795665 MS.gene71750:intron 30.0%
!!! TGGCTGTTAGTTTTTAAATC+TGG + chr1.1:77796979-77796998 MS.gene71750:CDS 30.0%
!!! TTAGTTTTGTGTTTCTTTCC+CGG + chr1.1:77797482-77797501 MS.gene71750:intron 30.0%
AAACAATATGAGACGGAGAA+AGG + chr1.1:77797454-77797473 MS.gene71750:intron 35.0%
AAGGATATTTCAAGGAAGAC+AGG + chr1.1:77799143-77799162 MS.gene71750:CDS 35.0%
AAGTAGTTGCAAGTATATGG+TGG + chr1.1:77797329-77797348 MS.gene71750:intron 35.0%
AATCATGGCTGAAAATCAAC+CGG - chr1.1:77797504-77797523 None:intergenic 35.0%
ACAGAGGAACTTATAACAAG+AGG - chr1.1:77796931-77796950 None:intergenic 35.0%
ACCAGAGTTTCAAATGCATT+AGG + chr1.1:77797923-77797942 MS.gene71750:CDS 35.0%
ACCTAATGCCTTAAGACTTT+GGG + chr1.1:77795846-77795865 MS.gene71750:intron 35.0%
AGAAAAAAAGCCAACCTGAA+AGG - chr1.1:77798156-77798175 None:intergenic 35.0%
AGAGTTTCAAATGCATTAGG+AGG + chr1.1:77797926-77797945 MS.gene71750:CDS 35.0%
AGGAAGTAAGATGTAAAAGG+AGG - chr1.1:77797199-77797218 None:intergenic 35.0%
AGGAGGAAGTAAGATGTAAA+AGG - chr1.1:77797202-77797221 None:intergenic 35.0%
ATACATAACCTAACACCTTC+CGG - chr1.1:77798045-77798064 None:intergenic 35.0%
ATGAGACACATAATACGTGA+AGG - chr1.1:77797222-77797241 None:intergenic 35.0%
ATTTGATCCTTAGTTGTGTG+AGG + chr1.1:77798563-77798582 MS.gene71750:intron 35.0%
CATAATTCATTCATGCAGCA+GGG - chr1.1:77798218-77798237 None:intergenic 35.0%
CCGTCTCATATTGTTTCATT+TGG - chr1.1:77797450-77797469 None:intergenic 35.0%
CTGTGTATTTGACATAAGCA+AGG - chr1.1:77796179-77796198 None:intergenic 35.0%
GAAAAAAAGCCAACCTGAAA+GGG - chr1.1:77798155-77798174 None:intergenic 35.0%
GGAAGTAAGATGTAAAAGGA+GGG - chr1.1:77797198-77797217 None:intergenic 35.0%
GTAAAATGTGATGCTCTGAT+TGG + chr1.1:77797886-77797905 MS.gene71750:intron 35.0%
GTCTTCCTCTATCTCTATTA+TGG + chr1.1:77796752-77796771 MS.gene71750:CDS 35.0%
GTGAAAATATTTAGCCTGAC+AGG - chr1.1:77798958-77798977 None:intergenic 35.0%
TAAGATCAAGAAATCCTGTC+AGG + chr1.1:77798941-77798960 MS.gene71750:intron 35.0%
TACCTAATGCCTTAAGACTT+TGG + chr1.1:77795845-77795864 MS.gene71750:intron 35.0%
TATACAATACCAGAAGCAAC+TGG + chr1.1:77797809-77797828 MS.gene71750:CDS 35.0%
TATTATGGATCTTCTTGGGA+AGG + chr1.1:77796767-77796786 MS.gene71750:CDS 35.0%
TCAAACAGAACTAGCATCTT+AGG + chr1.1:77799017-77799036 MS.gene71750:intron 35.0%
TGGTTGAACGTGATTATACT+TGG + chr1.1:77797045-77797064 MS.gene71750:CDS 35.0%
TTGTTAGAGAAAGACAGAGA+AGG + chr1.1:77795199-77795218 MS.gene71750:CDS 35.0%
TTTCTATCGGTACTTCATAC+TGG + chr1.1:77797025-77797044 MS.gene71750:CDS 35.0%
TTTCTTGAATGTCTGATTGC+AGG + chr1.1:77799104-77799123 MS.gene71750:intron 35.0%
! AAATCTGGATTAGGTTGCTT+AGG + chr1.1:77796994-77797013 MS.gene71750:CDS 35.0%
! ATGTGCCATTCAATAGTTTG+AGG + chr1.1:77796248-77796267 MS.gene71750:intron 35.0%
! CTAACCTTTTACCCATTCAT+AGG - chr1.1:77795804-77795823 None:intergenic 35.0%
! GATTGTTGAGTTCAAGTTTG+AGG + chr1.1:77795777-77795796 MS.gene71750:intron 35.0%
! TCCTAATGCATTTGAAACTC+TGG - chr1.1:77797927-77797946 None:intergenic 35.0%
! TGGTTCAAGAAGCATAACAT+GGG + chr1.1:77795222-77795241 MS.gene71750:CDS 35.0%
! TGGTTTGAGTTAAGAGGAAA+AGG + chr1.1:77798375-77798394 MS.gene71750:CDS 35.0%
! TGTGCCATTCAATAGTTTGA+GGG + chr1.1:77796249-77796268 MS.gene71750:intron 35.0%
! TTATCATTTTCAGCCTTGAG+TGG + chr1.1:77797539-77797558 MS.gene71750:intron 35.0%
! TTGCTGTTATATTGGGTTTC+TGG + chr1.1:77798355-77798374 MS.gene71750:CDS 35.0%
! TTTTGGTCTCTAAATCTGTG+AGG - chr1.1:77796542-77796561 None:intergenic 35.0%
!!! CCTAATATAAGTTTTGGGTG+GGG + chr1.1:77795648-77795667 MS.gene71750:intron 35.0%
!!! GGAAGGCTATTGATTTTACT+CGG + chr1.1:77796784-77796803 MS.gene71750:CDS 35.0%
AACTCTCCTATTCCAAGGAA+TGG - chr1.1:77797129-77797148 None:intergenic 40.0%
AAGACTGAAGTTTCAAGCTG+TGG - chr1.1:77797610-77797629 None:intergenic 40.0%
AAGTTTGAGGGCCTATGAAT+GGG + chr1.1:77795790-77795809 MS.gene71750:intron 40.0%
ACAGCCAACAAAAAGCTACA+TGG - chr1.1:77796966-77796985 None:intergenic 40.0%
ACCTCCCTCAAACTATTGAA+TGG - chr1.1:77796256-77796275 None:intergenic 40.0%
AGACACATAATACGTGAAGG+AGG - chr1.1:77797219-77797238 None:intergenic 40.0%
AGACTGAAGTTTCAAGCTGT+GGG - chr1.1:77797609-77797628 None:intergenic 40.0%
AGGAATGGCTCCATTGAAAT+CGG - chr1.1:77797114-77797133 None:intergenic 40.0%
AGGTCTTCTCTATCTTGTAC+TGG + chr1.1:77796313-77796332 MS.gene71750:intron 40.0%
AGTTAAGAGGAAAAGGACTG+TGG + chr1.1:77798382-77798401 MS.gene71750:CDS 40.0%
AGTTCAAAGAACACTCACAG+AGG - chr1.1:77796290-77796309 None:intergenic 40.0%
ATCATGGCTGAAAATCAACC+GGG - chr1.1:77797503-77797522 None:intergenic 40.0%
ATGAGGGTAACATCGGAAAA+AGG - chr1.1:77797304-77797323 None:intergenic 40.0%
ATGGGGTGTATTTGTTCAAG+AGG + chr1.1:77795240-77795259 MS.gene71750:CDS 40.0%
ATGGGTTCTTGCTTATGTCA+GGG + chr1.1:77795484-77795503 MS.gene71750:intron 40.0%
ATTTAGCAATGAGCAGGATG+TGG + chr1.1:77798063-77798082 MS.gene71750:CDS 40.0%
ATTTCAATGGAGCCATTCCT+TGG + chr1.1:77797114-77797133 MS.gene71750:CDS 40.0%
CAAAAACATAGTAGGCTCCA+AGG - chr1.1:77798326-77798345 None:intergenic 40.0%
CAGCTTCTTGTGAAATCAGA+GGG - chr1.1:77796816-77796835 None:intergenic 40.0%
CCCCACCCAAAACTTATATT+AGG - chr1.1:77795651-77795670 None:intergenic 40.0%
GAAAGAACTCTCCTATTCCA+AGG - chr1.1:77797134-77797153 None:intergenic 40.0%
GAACTCCTAATCCTTCTTTC+TGG + chr1.1:77797571-77797590 MS.gene71750:CDS 40.0%
GAAGACCAGAAAGAAGGATT+AGG - chr1.1:77797579-77797598 None:intergenic 40.0%
GACTAGCAAAAGACACATTC+AGG - chr1.1:77795547-77795566 None:intergenic 40.0%
GCATAATTCATTCATGCAGC+AGG - chr1.1:77798219-77798238 None:intergenic 40.0%
GTACAAGATAGAGAAGACCT+TGG - chr1.1:77796313-77796332 None:intergenic 40.0%
GTTCAAAGAACACTCACAGA+GGG - chr1.1:77796289-77796308 None:intergenic 40.0%
GTTTCAAATGCATTAGGAGG+TGG + chr1.1:77797929-77797948 MS.gene71750:CDS 40.0%
GTTTGGTCGCTAAATGTATG+AGG - chr1.1:77798778-77798797 None:intergenic 40.0%
TAATGCCTTAAGACTTTGGG+TGG + chr1.1:77795849-77795868 MS.gene71750:intron 40.0%
TACATAACCTAACACCTTCC+GGG - chr1.1:77798044-77798063 None:intergenic 40.0%
TACCAAATCATTCCTGCTGA+TGG - chr1.1:77797168-77797187 None:intergenic 40.0%
TATGACTGTTGCAGTTTCTG+AGG + chr1.1:77797988-77798007 MS.gene71750:CDS 40.0%
TATGGGTTCTTGCTTATGTC+AGG + chr1.1:77795483-77795502 MS.gene71750:intron 40.0%
TGAGTGTTCTTTGAACTCCA+AGG + chr1.1:77796293-77796312 MS.gene71750:intron 40.0%
TGCACACTGAAGAGTCATAT+GGG + chr1.1:77795466-77795485 MS.gene71750:intron 40.0%
TGTGCACTTGAAACTCAATG+CGG + chr1.1:77796652-77796671 MS.gene71750:CDS 40.0%
TTAGAGAAAGACAGAGAAGG+TGG + chr1.1:77795202-77795221 MS.gene71750:CDS 40.0%
TTAGGAGCTGCACTTTCTAT+CGG + chr1.1:77797012-77797031 MS.gene71750:CDS 40.0%
TTCCATCAGCAGGAATGATT+TGG + chr1.1:77797163-77797182 MS.gene71750:CDS 40.0%
TTGCACACTGAAGAGTCATA+TGG + chr1.1:77795465-77795484 MS.gene71750:intron 40.0%
TTGGAAGAAGACCAGAAAGA+AGG - chr1.1:77797585-77797604 None:intergenic 40.0%
! AAAAAGCTACATGGAAGCAC+AGG - chr1.1:77796957-77796976 None:intergenic 40.0%
! AAAAGCTACATGGAAGCACA+GGG - chr1.1:77796956-77796975 None:intergenic 40.0%
! ACCCAAAGTCTTAAGGCATT+AGG - chr1.1:77795850-77795869 None:intergenic 40.0%
! CACTGATTGTGAAGAAACTC+GGG + chr1.1:77797086-77797105 MS.gene71750:CDS 40.0%
! CCACTGATTGTGAAGAAACT+CGG + chr1.1:77797085-77797104 MS.gene71750:CDS 40.0%
! CTTGGAGCCTACTATGTTTT+TGG + chr1.1:77798324-77798343 MS.gene71750:CDS 40.0%
! CTTTTGCTAGCCCTTATAAC+AGG + chr1.1:77798438-77798457 MS.gene71750:CDS 40.0%
! GACATTGCCTCACAGTTTTA+GGG + chr1.1:77796029-77796048 MS.gene71750:intron 40.0%
! GCTTCCATGTAGCTTTTTGT+TGG + chr1.1:77796959-77796978 MS.gene71750:CDS 40.0%
! GGTTCAAGAAGCATAACATG+GGG + chr1.1:77795223-77795242 MS.gene71750:CDS 40.0%
! GTGGTTCAAGAAGCATAACA+TGG + chr1.1:77795221-77795240 MS.gene71750:CDS 40.0%
! TGACATTGCCTCACAGTTTT+AGG + chr1.1:77796028-77796047 MS.gene71750:intron 40.0%
! TTTAGAGTAAGCGGTCAGTT+TGG - chr1.1:77798795-77798814 None:intergenic 40.0%
! TTTTGGTCCCTAAAACTGTG+AGG - chr1.1:77796039-77796058 None:intergenic 40.0%
!! AATGATGATGGTTGGTCGTT+TGG + chr1.1:77795336-77795355 MS.gene71750:CDS 40.0%
!! ATGATGATGGTTGGTCGTTT+GGG + chr1.1:77795337-77795356 MS.gene71750:CDS 40.0%
!! CATAAAGTAAGAGTGCCGTT+TGG + chr1.1:77796365-77796384 MS.gene71750:intron 40.0%
!! GGTGGACTATGTCACATATA+TGG + chr1.1:77798084-77798103 MS.gene71750:CDS 40.0%
!! GGTTTCTGGTTTGAGTTAAG+AGG + chr1.1:77798369-77798388 MS.gene71750:CDS 40.0%
!! TAGCAAAAGTGCTTGACAGA+AGG - chr1.1:77798427-77798446 None:intergenic 40.0%
AACTCGGGTTCCGATTTCAA+TGG + chr1.1:77797101-77797120 MS.gene71750:CDS 45.0%
ACTCAATGCGGACAAGCTTA+TGG + chr1.1:77796664-77796683 MS.gene71750:CDS 45.0%
AGAGGAAAAGGACTGTGGAT+TGG + chr1.1:77798387-77798406 MS.gene71750:CDS 45.0%
AGGGCCTATGAATGGGTAAA+AGG + chr1.1:77795797-77795816 MS.gene71750:intron 45.0%
AGTTTACATGGCACCCTTTC+AGG + chr1.1:77798139-77798158 MS.gene71750:CDS 45.0%
ATGGAGCCATTCCTTGGAAT+AGG + chr1.1:77797120-77797139 MS.gene71750:CDS 45.0%
ATTGCAGGCAATCAAAGCAC+GGG + chr1.1:77799119-77799138 MS.gene71750:intron 45.0%
CAACAACGAGCAAATGCTCT+AGG - chr1.1:77795876-77795895 None:intergenic 45.0%
CAAGTTTGAGGGCCTATGAA+TGG + chr1.1:77795789-77795808 MS.gene71750:intron 45.0%
CATTTGCTCGTTGTTGCTCT+AGG + chr1.1:77795880-77795899 MS.gene71750:intron 45.0%
CCAGCTTCTTGTGAAATCAG+AGG - chr1.1:77796817-77796836 None:intergenic 45.0%
CCGAGTTTCTTCACAATCAG+TGG - chr1.1:77797088-77797107 None:intergenic 45.0%
CCTCTGATTTCACAAGAAGC+TGG + chr1.1:77796814-77796833 MS.gene71750:CDS 45.0%
GAAGTTTCAAGCTGTGGGTT+TGG - chr1.1:77797604-77797623 None:intergenic 45.0%
GACAAAGTGACAGCGATCAT+AGG - chr1.1:77795292-77795311 None:intergenic 45.0%
GACTAACGAAAGTCGCGTTT+AGG - chr1.1:77798635-77798654 None:intergenic 45.0%
GAGGAAAAGGACTGTGGATT+GGG + chr1.1:77798388-77798407 MS.gene71750:CDS 45.0%
GATTGCAGGCAATCAAAGCA+CGG + chr1.1:77799118-77799137 MS.gene71750:intron 45.0%
GCACGGGAAAGGATATTTCA+AGG + chr1.1:77799135-77799154 MS.gene71750:CDS 45.0%
GCCATTCAATAGTTTGAGGG+AGG + chr1.1:77796252-77796271 MS.gene71750:intron 45.0%
GCGACTTTCGTTAGTCAGTT+TGG + chr1.1:77798639-77798658 MS.gene71750:intron 45.0%
GCTATTGCTATCTCTCTCTG+TGG + chr1.1:77795382-77795401 MS.gene71750:CDS 45.0%
GTATTGCTAGAGGATCTGGT+TGG + chr1.1:77798277-77798296 MS.gene71750:CDS 45.0%
GTGTTTGGATCAAGTACAGG+AGG + chr1.1:77795731-77795750 MS.gene71750:intron 45.0%
GTTCAAATGACCACCACTCA+AGG - chr1.1:77797555-77797574 None:intergenic 45.0%
TAGGACCACCCAAAGTCTTA+AGG - chr1.1:77795857-77795876 None:intergenic 45.0%
TTGGATCAAGTACAGGAGGT+GGG + chr1.1:77795735-77795754 MS.gene71750:intron 45.0%
TTTGGATCAAGTACAGGAGG+TGG + chr1.1:77795734-77795753 MS.gene71750:intron 45.0%
! ACAGGTATTGCTAGAGGATC+TGG + chr1.1:77798273-77798292 MS.gene71750:intron 45.0%
! AGGGTGTTTGGATCAAGTAC+AGG + chr1.1:77795728-77795747 MS.gene71750:intron 45.0%
! TCAATACATTCAGGCGCTGT+GGG + chr1.1:77798746-77798765 MS.gene71750:intron 45.0%
! TCATTTTCAGCCTTGAGTGG+TGG + chr1.1:77797542-77797561 MS.gene71750:intron 45.0%
! TTCAATACATTCAGGCGCTG+TGG + chr1.1:77798745-77798764 MS.gene71750:intron 45.0%
! TTGGGAGCATATGTGAACCT+TGG + chr1.1:77798306-77798325 MS.gene71750:CDS 45.0%
!! ACTGTGGATTGGGATACTTG+TGG + chr1.1:77798398-77798417 MS.gene71750:CDS 45.0%
!! ATCAAACTTGTTGGGGAGTC+CGG - chr1.1:77795913-77795932 None:intergenic 45.0%
!! CTGTGGATTGGGATACTTGT+GGG + chr1.1:77798399-77798418 MS.gene71750:CDS 45.0%
!!! ATAAGTTTTGGGTGGGGATG+TGG + chr1.1:77795654-77795673 MS.gene71750:intron 45.0%
!!! TTATTTGTAATTTTATTTAT+GGG - chr1.1:77798697-77798716 None:intergenic 5.0%
!!! TTTATTTGTAATTTTATTTA+TGG - chr1.1:77798698-77798717 None:intergenic 5.0%
AGGATCTGGTTGGCAGAAGT+TGG + chr1.1:77798287-77798306 MS.gene71750:CDS 50.0%
AGGCAATCAAAGCACGGGAA+AGG + chr1.1:77799124-77799143 MS.gene71750:intron 50.0%
AGGCAGAGCCACAAAGACTT+AGG - chr1.1:77798499-77798518 None:intergenic 50.0%
ATAACCTAACACCTTCCGGG+AGG - chr1.1:77798041-77798060 None:intergenic 50.0%
ATCTCTCTCTGTGGTGTCTC+TGG + chr1.1:77795391-77795410 MS.gene71750:CDS 50.0%
CAGAGCAGGAATCATGCACA+TGG - chr1.1:77796848-77796867 None:intergenic 50.0%
CCACAAAGACTTAGGAGCGA+AGG - chr1.1:77798491-77798510 None:intergenic 50.0%
CCTTCGCTCCTAAGTCTTTG+TGG + chr1.1:77798488-77798507 MS.gene71750:intron 50.0%
CGATACGCTATTCCATCAGC+AGG + chr1.1:77797153-77797172 MS.gene71750:CDS 50.0%
CTAGTGCCAAATGTGGAGTG+AGG - chr1.1:77798519-77798538 None:intergenic 50.0%
GACAGTGCCTCACACAACTA+AGG - chr1.1:77798573-77798592 None:intergenic 50.0%
GGATCTGGTTGGCAGAAGTT+GGG + chr1.1:77798288-77798307 MS.gene71750:CDS 50.0%
GTTGCATAGGCAAACAGAGC+AGG - chr1.1:77796862-77796881 None:intergenic 50.0%
GTTTGCCTATGCAACGCTTC+AGG + chr1.1:77796867-77796886 MS.gene71750:CDS 50.0%
TAGCAATGAGCAGGATGTGG+TGG + chr1.1:77798066-77798085 MS.gene71750:CDS 50.0%
! ATGGAAGCACAGGGTAACAG+AGG - chr1.1:77796947-77796966 None:intergenic 50.0%
! TACATGGCACCCTTTCAGGT+TGG + chr1.1:77798143-77798162 MS.gene71750:intron 50.0%
!! TCAAACTTGTTGGGGAGTCC+GGG - chr1.1:77795912-77795931 None:intergenic 50.0%
ACAGACAATCGCGCTGCTTG+TGG - chr1.1:77797959-77797978 None:intergenic 55.0%
ATCTCGTTGCCCTGAAGCGT+TGG + chr1.1:77795682-77795701 MS.gene71750:intron 55.0%
CCCTACATGCCAACGCTTCA+GGG - chr1.1:77795694-77795713 None:intergenic 55.0%
CTATGCAACGCTTCAGGCAC+TGG + chr1.1:77796873-77796892 MS.gene71750:CDS 55.0%
GCTCTGCCTCACTCCACATT+TGG + chr1.1:77798510-77798529 MS.gene71750:intron 55.0%
! AAGCAACTGGCTCAGCAGCA+AGG + chr1.1:77797822-77797841 MS.gene71750:CDS 55.0%
! GTTCCACCATTTTCGCCTCC+CGG + chr1.1:77798023-77798042 MS.gene71750:CDS 55.0%
!! AAACTTGTTGGGGAGTCCGG+GGG - chr1.1:77795910-77795929 None:intergenic 55.0%
!! CAAACTTGTTGGGGAGTCCG+GGG - chr1.1:77795911-77795930 None:intergenic 55.0%
!! CAGTGCCTGAAGCGTTGCAT+AGG - chr1.1:77796875-77796894 None:intergenic 55.0%
!! CCCTGAAGCGTTGGCATGTA+GGG + chr1.1:77795691-77795710 MS.gene71750:intron 55.0%
!! CCTGAAGCGTTGGCATGTAG+GGG + chr1.1:77795692-77795711 MS.gene71750:intron 55.0%
CACCTTCCGGGAGGCGAAAA+TGG - chr1.1:77798032-77798051 None:intergenic 60.0%
CCCCTACATGCCAACGCTTC+AGG - chr1.1:77795695-77795714 None:intergenic 60.0%
CTTCCGGGAGGCGAAAATGG+TGG - chr1.1:77798029-77798048 None:intergenic 60.0%
GCTGCTGAGCCAGTTGCTTC+TGG - chr1.1:77797821-77797840 None:intergenic 60.0%
TAGGGGAGTGGGAGGGGATA+GGG + chr1.1:77795709-77795728 MS.gene71750:intron 60.0%
TGGCATGTAGGGGAGTGGGA+GGG + chr1.1:77795702-77795721 MS.gene71750:intron 60.0%
TTGGCATGTAGGGGAGTGGG+AGG + chr1.1:77795701-77795720 MS.gene71750:intron 60.0%
! CACCATTTTCGCCTCCCGGA+AGG + chr1.1:77798027-77798046 MS.gene71750:CDS 60.0%
! GCGTTGGCATGTAGGGGAGT+GGG + chr1.1:77795698-77795717 MS.gene71750:intron 60.0%
! GTGGGAGGGGATAGGGTGTT+TGG + chr1.1:77795716-77795735 MS.gene71750:intron 60.0%
! TGTTGCTCTAGGCACTCCCC+CGG + chr1.1:77795891-77795910 MS.gene71750:intron 60.0%
!! AGCGTTGGCATGTAGGGGAG+TGG + chr1.1:77795697-77795716 MS.gene71750:intron 60.0%
!! GCCCTGAAGCGTTGGCATGT+AGG + chr1.1:77795690-77795709 MS.gene71750:intron 60.0%
!! TTCGCCTCCCGGAAGGTGTT+AGG + chr1.1:77798034-77798053 MS.gene71750:CDS 60.0%
GGCATGTAGGGGAGTGGGAG+GGG + chr1.1:77795703-77795722 MS.gene71750:intron 65.0%
GTAGGGGAGTGGGAGGGGAT+AGG + chr1.1:77795708-77795727 MS.gene71750:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 77795187 77799196 77795187 ID=MS.gene71750
chr1.1 mRNA 77795187 77799196 77795187 ID=MS.gene71750.t1;Parent=MS.gene71750
chr1.1 exon 77795187 77795426 77795187 ID=MS.gene71750.t1.exon1;Parent=MS.gene71750.t1
chr1.1 CDS 77795187 77795426 77795187 ID=cds.MS.gene71750.t1;Parent=MS.gene71750.t1
chr1.1 exon 77796640 77797184 77796640 ID=MS.gene71750.t1.exon2;Parent=MS.gene71750.t1
chr1.1 CDS 77796640 77797184 77796640 ID=cds.MS.gene71750.t1;Parent=MS.gene71750.t1
chr1.1 exon 77797552 77797638 77797552 ID=MS.gene71750.t1.exon3;Parent=MS.gene71750.t1
chr1.1 CDS 77797552 77797638 77797552 ID=cds.MS.gene71750.t1;Parent=MS.gene71750.t1
chr1.1 exon 77797787 77797843 77797787 ID=MS.gene71750.t1.exon4;Parent=MS.gene71750.t1
chr1.1 CDS 77797787 77797843 77797787 ID=cds.MS.gene71750.t1;Parent=MS.gene71750.t1
chr1.1 exon 77797922 77798160 77797922 ID=MS.gene71750.t1.exon5;Parent=MS.gene71750.t1
chr1.1 CDS 77797922 77798160 77797922 ID=cds.MS.gene71750.t1;Parent=MS.gene71750.t1
chr1.1 exon 77798277 77798459 77798277 ID=MS.gene71750.t1.exon6;Parent=MS.gene71750.t1
chr1.1 CDS 77798277 77798459 77798277 ID=cds.MS.gene71750.t1;Parent=MS.gene71750.t1
chr1.1 exon 77799126 77799196 77799126 ID=MS.gene71750.t1.exon7;Parent=MS.gene71750.t1
chr1.1 CDS 77799126 77799196 77799126 ID=cds.MS.gene71750.t1;Parent=MS.gene71750.t1
Gene Sequence

>MS.gene71750

ATGGAAAAGGGTTTGTTAGAGAAAGACAGAGAAGGTGGTTCAAGAAGCATAACATGGGGTGTATTTGTTCAAGAGGTGAAAGATGTTTGTTTTCTAGCTCTGCCTATGATCGCTGTCACTTTGTCACAATATTTTCTACAAATTATTTCAATGATGATGGTTGGTCGTTTGGGTAAACTTGCTCTTTCTAGCACAGCTATTGCTATCTCTCTCTGTGGTGTCTCTGGCTTCAGTCTTCTTGTAAGTCTTCTTGATTTTAAGAGCAACTGTTGTATTATTTGCACACTGAAGAGTCATATGGGTTCTTGCTTATGTCAGGGAGTGTCATTATTGCGTATCAAAATTAAAAAAAATATTCCTGAATGTGTCTTTTGCTAGTCAGTATAGTTCTCAAATGTGTTTTCGATTAGTTAGTTTTGTTGGGTTCAAGTGTTTGATATATAAGAGAGATGACTCACATACCTAATATAAGTTTTGGGTGGGGATGTGGCGTCTATCTCGTTGCCCTGAAGCGTTGGCATGTAGGGGAGTGGGAGGGGATAGGGTGTTTGGATCAAGTACAGGAGGTGGGAACTCATAGTTGAGCGAGAGATTGTTGAGTTCAAGTTTGAGGGCCTATGAATGGGTAAAAGGTTAGATATAAGATAGGTGACCTATATACCTAATGCCTTAAGACTTTGGGTGGTCCTAGAGCATTTGCTCGTTGTTGCTCTAGGCACTCCCCCGGACTCCCCAACAAGTTTGATATTGAATGTGTAATTTGTTTGTTGGTCCATAAAATTACTAATAGAAGAAACATTCATGAATGTTTTTGAAGTTTTGATACATTGAAGGACTATAATGACATTGCCTCACAGTTTTAGGGACCAAAATAATTGTTTACTCATTATTTGCATCCAACCTATACGAAATTAATTGCATTTTATTTTATATTTTGTACATATCAAACAGTTTGGAATGTCATGTGTACACTAAACAGTCATTTAGATCCTTGCTTATGTCAAATACACAGAGTAGCACTATAGCCTCTGAATGAATCAAAATAACAAAAATATTCTTGAATGTGCCATTCAATAGTTTGAGGGAGGTAAACGTAAATCCCTCTGTGAGTGTTCTTTGAACTCCAAGGTCTTCTCTATCTTGTACTGGCGCACCATCTCTTCATCCTAAAAAAAATTCATAAAGTAAGAGTGCCGTTTGGTAGTTATTACTTATTAGGTTCTCAAATGTGTTTTCGATTAGTTAGTTTGATATTGAATGTTTTTTTTTGTTGGTCTGTAAAATTACTAATAGAAGACACATTCAGGAATGTTTTTGAAGTTCTGATTCATTGAAGGACTACAATGACATTGCCTCACAGATTTAGAGACCAAAATCAATGTTACTTATTATTTGAATCCAATTAATATGAAATTGATTGCATTTTATTTTATACTTTGTGCATATCAAACAGTTTGGAATGTCATGTGCACTTGAAACTCAATGCGGACAAGCTTATGGTGCAAAGCAATATAAAAAATTTGGTGTTCAAATTTACACTGCTGTCTTTTCTCTTATTATAGCTTGTCTTCCTCTATCTCTATTATGGATCTTCTTGGGAAGGCTATTGATTTTACTCGGTCAAGACCCTCTGATTTCACAAGAAGCTGGAAAATTTGCCATGTGCATGATTCCTGCTCTGTTTGCCTATGCAACGCTTCAGGCACTGGTCAGATACTTTCTGATGCAAAGTTTGATAATTCCTCTTGTTATAAGTTCCTCTGTTACCCTGTGCTTCCATGTAGCTTTTTGTTGGCTGTTAGTTTTTAAATCTGGATTAGGTTGCTTAGGAGCTGCACTTTCTATCGGTACTTCATACTGGTTGAACGTGATTATACTTGGATTATATATGAAATTCTCCACTGATTGTGAAGAAACTCGGGTTCCGATTTCAATGGAGCCATTCCTTGGAATAGGAGAGTTCTTTCGATACGCTATTCCATCAGCAGGAATGATTTGGTAGTTCACTCCCTCCTTTTACATCTTACTTCCTCCTTCACGTATTATGTGTCTCATTTAGAATATTTATGACTCAAATTATTTGTCATTTTATAATATGAATATAACATTGACTACCTTTTTCCGATGTTACCCTCATTTATCAAGTAGTTGCAAGTATATGGTGGACAAATAATAAATGAGGTATGAGGATATTTTAGTCTTGACACGTTTTTTGCATTGAAATTTGCAATAAGTAATCAGTTTCTTAAGTGTGCAGATTCCAAATGAAACAATATGAGACGGAGAAAGGATATTTTAGTTTTGTGTTTCTTTCCCGGTTGATTTTCAGCCATGATTTGTTTCTTACATATTTTATCATTTTCAGCCTTGAGTGGTGGTCATTTGAACTCCTAATCCTTCTTTCTGGTCTTCTTCCAAACCCACAGCTTGAAACTTCAGTCTTATCCATATGGTATAATGCCACTTTTCTTAGTCTTTCTTATATGAATTCCTTTGTGTCTTAAAATTTGTGTTGAAATTGTTACTATAAGTCAAAATTGTTTTTCATTCATATAATTGGTGCTAATTAATTGTGTAAATTGTTTCTGTTTTTTTATCAGTTTATCAATCATCTCAACAATCTATACAATACCAGAAGCAACTGGCTCAGCAGCAAGGTTTTGATTCACATTAGTTGTGCATATACATTTTTGTGTACAGTAAAATGTGATGCTCTGATTGGTTTTTATTTTCAGCACCAGAGTTTCAAATGCATTAGGAGGTGGATGTCCACAAGCAGCGCGATTGTCTGTCTTTGCTTCTATGACTGTTGCAGTTTCTGAGGCTATTTTAGTGAGTTCCACCATTTTCGCCTCCCGGAAGGTGTTAGGTTATGTATTTAGCAATGAGCAGGATGTGGTGGACTATGTCACATATATGGTTCCTCTGATAAGTCTAAATGTTATAGTAGATAGTTTACATGGCACCCTTTCAGGTTGGCTTTTTTTCTTTGCTATTCAAAGCATGATACTTCATTTTTTCATTAAGTCCCTGCTGCATGAATGAATTATGCTATGGAATGTAACACTAGTCCATTATATTTATATACAGGTATTGCTAGAGGATCTGGTTGGCAGAAGTTGGGAGCATATGTGAACCTTGGAGCCTACTATGTTTTTGGAATTCCAATTGCTGTTATATTGGGTTTCTGGTTTGAGTTAAGAGGAAAAGGACTGTGGATTGGGATACTTGTGGGTGCCTTCTGTCAAGCACTTTTGCTAGCCCTTATAACAGGTTTTACAAACTGGGAAAAACAGGTTTGCCTTCGCTCCTAAGTCTTTGTGGCTCTGCCTCACTCCACATTTGGCACTAGTATTAAAAACAGAGTAAACAGTCAATTTGATCCTTAGTTGTGTGAGGCACTGTCACAATAGTGTATGAATGTATCAAAATTATAAAAAACATACCTAAACGCGACTTTCGTTAGTCAGTTTGGTTCTCGAGTGTGTCTATTGTTAGTCAACTTGACCCATAAATAAAATTACAAATAAAAGACACACTTGAGGGTGTTTTTGTAATTTCAATACATTCAGGCGCTGTGGGACAACACCTCATACATTTAGCGACCAAACTGACCGCTTACTCTAAAAACACAAGTTCCACGTTAAAAAGAGATAAAGTCTGTAAAAAGTACTCAGCTTCAGAATCATTTCAGATGAAGAAATCCTGTCAAGCTAATAGTATGAAAATCTAATAGGCACAGTTCAAAAGCATCTAAGATCAAGAAATCCTGTCAGGCTAAATATTTTCACATTAATATGTTAAACTTGAGAAGATAATTATGTTCAAGCTCAAACAGAACTAGCATCTTAGGCCATGCTATCTTATTAAGATTCTGTAACAGTTTTGAACATGTACTGTTTATTGAAATATAGTAATTTCTTGAATGTCTGATTGCAGGCAATCAAAGCACGGGAAAGGATATTTCAAGGAAGACAGGAAGTTTTGCAGTAGAAGATAGATCAATTTGA
Protein sequence

>MS.gene71750.t1

MEKGLLEKDREGGSRSITWGVFVQEVKDVCFLALPMIAVTLSQYFLQIISMMMVGRLGKLALSSTAIAISLCGVSGFSLLFGMSCALETQCGQAYGAKQYKKFGVQIYTAVFSLIIACLPLSLLWIFLGRLLILLGQDPLISQEAGKFAMCMIPALFAYATLQALVRYFLMQSLIIPLVISSSVTLCFHVAFCWLLVFKSGLGCLGAALSIGTSYWLNVIILGLYMKFSTDCEETRVPISMEPFLGIGEFFRYAIPSAGMICLEWWSFELLILLSGLLPNPQLETSVLSICLSIISTIYTIPEATGSAASTRVSNALGGGCPQAARLSVFASMTVAVSEAILVSSTIFASRKVLGYVFSNEQDVVDYVTYMVPLISLNVIVDSLHGTLSGIARGSGWQKLGAYVNLGAYYVFGIPIAVILGFWFELRGKGLWIGILVGAFCQALLLALITGNQSTGKDISRKTGSFAVEDRSI