AlfalfaGEDB | MS.gene59997

M. sativa cultivar XinJiangDaYe / MS.gene59997

KEGG: K03327
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0015291 GO:0015297 GO:0016020 GO:0022804 GO:0022857 GO:0042910 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF01554.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59997.t1	XP_003620349.2	98.4	428	7	0	1	428	53	480	6.60E-231	809.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59997.t1	Q9FHB6	68.3	417	130	1	1	417	53	467	2.0e-159	563.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59997.t1	G7KM46	98.4	428	7	0	1	428	53	480	4.7e-231	809.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene020465	MS.gene59997	PPI
MS.gene029498	MS.gene59997	PPI
MS.gene029501	MS.gene59997	PPI
MS.gene032679	MS.gene59997	PPI
MS.gene042352	MS.gene59997	PPI
MS.gene042353	MS.gene59997	PPI
MS.gene042358	MS.gene59997	PPI
MS.gene05335	MS.gene59997	PPI
MS.gene05336	MS.gene59997	PPI
MS.gene05341	MS.gene59997	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59997.t1	MTR_6g081780	98.364	428	7	0	1	428	53	480	0.0	852
MS.gene59997.t1	MTR_6g081410	89.252	428	46	0	1	428	53	480	0.0	757
MS.gene59997.t1	MTR_6g066380	82.477	428	75	0	1	428	55	482	0.0	704
MS.gene59997.t1	MTR_6g081810	79.673	428	59	1	1	428	55	454	0.0	659
MS.gene59997.t1	MTR_1g108810	59.762	420	162	2	1	415	62	479	0.0	519
MS.gene59997.t1	MTR_8g106670	60.714	420	163	1	1	420	40	457	0.0	513
MS.gene59997.t1	MTR_6g081400	58.042	429	177	2	1	428	43	469	1.30e-178	507
MS.gene59997.t1	MTR_6g081390	60.839	429	165	2	1	428	40	466	6.08e-178	505
MS.gene59997.t1	MTR_6g081300	56.115	417	181	1	1	417	38	452	2.73e-166	476
MS.gene59997.t1	MTR_6g081240	56.585	410	175	2	1	409	37	444	7.41e-163	466

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59997.t1	AT5G52450	67.217	424	137	1	1	424	53	474	0.0	574
MS.gene59997.t1	AT2G34360	63.420	421	144	4	1	420	54	465	0.0	540
MS.gene59997.t1	AT1G73700	64.029	417	148	1	1	417	51	465	0.0	531
MS.gene59997.t1	AT2G34360	55.476	420	137	2	1	420	54	423	3.93e-163	466
MS.gene59997.t1	AT1G71140	50.600	417	204	1	1	417	53	467	2.28e-146	426
MS.gene59997.t1	AT1G15150	45.540	426	230	1	3	428	60	483	1.45e-138	405
MS.gene59997.t1	AT1G15160	46.009	426	228	1	3	428	60	483	3.00e-138	405
MS.gene59997.t1	AT1G15170	47.962	417	215	1	1	417	61	475	5.58e-138	404
MS.gene59997.t1	AT1G66760	46.523	417	221	1	1	417	55	469	1.81e-132	390
MS.gene59997.t1	AT1G15180	49.157	415	209	1	3	417	64	476	2.18e-132	390

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Find 90 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCGGTGCTTTCTATC+TGG	0.323113	6.1:-72247069	MS.gene59997:intron
AAAGCTAATACAACAGCTGC+CGG	0.577987	6.1:+72246319	None:intergenic
AAATCCAAAATTGGAAACAT+CGG	0.596495	6.1:-72247083	MS.gene59997:CDS
AACAATCATGAGAATGAACA+TGG	0.661307	6.1:+72247729	None:intergenic
AACCATTGCAGCTGAAGGAA+TGG	0.512139	6.1:+72247291	None:intergenic
AACTAAAATGCTCTCAATAA+CGG	0.469061	6.1:+72246708	None:intergenic
AAGAAAATCGGAATATTGTT+CGG	0.436135	6.1:+72247322	None:intergenic
AAGGCTGTTACTGCAAGAAG+TGG	0.628535	6.1:+72246598	None:intergenic
AAGTCTGGATTTGGTAGCGG+AGG	0.610980	6.1:-72247463	MS.gene59997:CDS
AATATGGTCATTTGAATTAG+TGG	0.380118	6.1:-72247128	MS.gene59997:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATCATGAGAATGAACA+TGG	+	chr6.1:72246822-72246841	None:intergenic	30.0%
ACAAGATCACGAAATATCTA+CGG	-	chr6.1:72246898-72246917	MS.gene59997:intron	30.0%
AGCAAGTTCAATATCCTATT+GGG	-	chr6.1:72247117-72247136	MS.gene59997:CDS	30.0%
ATCAAATCCTCTTAATCTCT+CGG	-	chr6.1:72246299-72246318	MS.gene59997:CDS	30.0%
CATGTCAAAAAACATGGAAT+GGG	-	chr6.1:72247182-72247201	MS.gene59997:intron	30.0%
CTTGGATCATACTATTTAGT+CGG	-	chr6.1:72248202-72248221	MS.gene59997:intron	30.0%
GTATAGTCTCTAAATGTGAA+TGG	-	chr6.1:72246263-72246282	MS.gene59997:intron	30.0%
TAGCAAGTTCAATATCCTAT+TGG	-	chr6.1:72247116-72247135	MS.gene59997:CDS	30.0%
TATACCATATACCAACATAG+AGG	+	chr6.1:72247064-72247083	None:intergenic	30.0%
TCATGTCAAAAAACATGGAA+TGG	-	chr6.1:72247181-72247200	MS.gene59997:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	72245959	72248611	72245959	ID=MS.gene59997
chr6.1	mRNA	72245959	72248611	72245959	ID=MS.gene59997.t1;Parent=MS.gene59997
chr6.1	exon	72248525	72248611	72248525	ID=MS.gene59997.t1.exon1;Parent=MS.gene59997.t1
chr6.1	CDS	72248525	72248611	72248525	ID=cds.MS.gene59997.t1;Parent=MS.gene59997.t1
chr6.1	exon	72247289	72247839	72247289	ID=MS.gene59997.t1.exon2;Parent=MS.gene59997.t1
chr6.1	CDS	72247289	72247839	72247289	ID=cds.MS.gene59997.t1;Parent=MS.gene59997.t1
chr6.1	exon	72247070	72247156	72247070	ID=MS.gene59997.t1.exon3;Parent=MS.gene59997.t1
chr6.1	CDS	72247070	72247156	72247070	ID=cds.MS.gene59997.t1;Parent=MS.gene59997.t1
chr6.1	exon	72246911	72246967	72246911	ID=MS.gene59997.t1.exon4;Parent=MS.gene59997.t1
chr6.1	CDS	72246911	72246967	72246911	ID=cds.MS.gene59997.t1;Parent=MS.gene59997.t1
chr6.1	exon	72246569	72246807	72246569	ID=MS.gene59997.t1.exon5;Parent=MS.gene59997.t1
chr6.1	CDS	72246569	72246807	72246569	ID=cds.MS.gene59997.t1;Parent=MS.gene59997.t1
chr6.1	exon	72246297	72246415	72246297	ID=MS.gene59997.t1.exon6;Parent=MS.gene59997.t1
chr6.1	CDS	72246297	72246415	72246297	ID=cds.MS.gene59997.t1;Parent=MS.gene59997.t1
chr6.1	exon	72246130	72246216	72246130	ID=MS.gene59997.t1.exon7;Parent=MS.gene59997.t1
chr6.1	CDS	72246130	72246216	72246130	ID=cds.MS.gene59997.t1;Parent=MS.gene59997.t1
chr6.1	exon	72245959	72246018	72245959	ID=MS.gene59997.t1.exon8;Parent=MS.gene59997.t1
chr6.1	CDS	72245959	72246018	72245959	ID=cds.MS.gene59997.t1;Parent=MS.gene59997.t1

Gene Sequence

>MS.gene59997

ATGTTTGTTGGTCATCTTAGTGAGTTATCTCTCTCTGGTGCTTCTATGGCTACTTCCTTTGCTTCTGTTACTGGTTTCAGTTTATTGGTAAGTTCTCTCTTCTTTTCCTATTTATTTTACTACAAAAATGTCAGAACAAACTAACTTAATTTTCATCAATAGTGCTCATTGTTTGTTTTTTTTTTTTTTTTTTTTGTTGCAATGTTACTAAACCATTATTAATTCAGTTTGAGTGAACTAAGATCTGAGGTTGAATCTAGCTTAAGAGACAATGTTCGAATCATTGCCGGAAAGATGTGTTTATGTATAGTCTCTAAATGTGAATGGTGACGGGTCAAGAATCAAATCCTCTTAATCTCTCGGAAAACTAAGAATAGAGATAAACACAAATAAGATAATGGTATTCAATTTTTAAAATATTTAAAAAATGGACTTAACCAATAGTCTACTTGTGCTCTCAGTTTCTTTCGAAAACCGTAGAGAATCTCAACTCAATGGTAATAAAATGGCGTGAGTTGTGATCTTAGGATATGGATTTGCTGTAGTAAGCAAATCCATGAACTCACGCAATCACATATCGGTTGTTATTCAATTAAGATCGTACTATCCAAATTGAAGTTTAATATTTGTGTACACAATCAAACCTTCCGTTGATTTGTTCCCTTTTCCCATTACCTCTAAGACTAAACCTTGTTATCATGATCCATTGCGATTCAATCCTTGTCACTTTGTCAAAAAATAAATTCGATTTTATATGTTTTTGCTTTAATAGGTCGGAATGGCAAGTGCCTTGGACACATTATGTGGCCAGTCATATGGCGCAAAGCAGTACCGCATGCTAGGCATACACATGCAAAGAGCCATGTTCATTCTCATGATTGTTGCGATTCCTCTCGCTATTATTTGGGCAAACACTAGATCCATTCTCATTTTCCTTGGACAAGATCACGAAATATCTACGGAGGCCGGCAACTATGCTAAGTTAATGGTTCCATCCCTTTTTGCTTATGGTCTCCTACAATGCCTCAACAGATTCTTACAAACTCAAAATATTGTATTTCCAATGATGTTAAGCTCCGCGGTTACGACATTACTTCATCTTCCTCTATGTTGGTATATGGTATACAAGTCTGGATTTGGTAGCGGAGGCGCTGCCATAGCAAGTTCAATATCCTATTGGGTCAATGTTACCATACTATCACTCTATGTAAAATTTTCTCCATCATGTCAAAAAACATGGAATGGGTTTTCTAGGGAAGCACTTGCACCGAACAATATTCCGATTTTCTTGAAGCTTGCCATTCCTTCAGCTGCAATGGTTTGGTAATCACCTTTTCAAATAGTTCAGTATTTTATAACACCACATATTATTATATAATTTTATTAACTATTTAGTTTCTTTACTAAAACTTATATGTTGTTTTCATTTTTTTATTTTCGTCTTGTGGCGAGTAGCTTGGAAATATGGTCATTTGAATTAGTGGTTCTCCTTTCCGGTCTCCTTCCAAATCCAAAATTGGAAACATCGGTGCTTTCTATCTGGTTAGTTTCATATATATATATATATATATATATATATATTCGAGATCCTCTTCGATATTATTTTGATTATTTTAACCTATTGTTGGTGACTTGGCTTGTCAGTTTGAATACAACAGCAGTCGTTTGGATGATCCCATTTGGACTTAGTGGAGCTATAAGGTTAGTAGCAACCTCACTATTTTCTTAAGCAAAAATTCTCCAAAACATTGTTCTATTTGTTATTTTCATGTTGATTTTTATTAGCGCTTGAATGATCTTGCAGCGTTCGCGTTTCAAACGAACTCGGTGCTGGTAATCCACAGGCTGCACGTTTGGCAGTCTGCGTCGTTGTAGTAATTGCCGTTATTGAGAGCATTTTAGTTGGAGCGGTGGTTATACTAATTCGCAATATATGGGGTTATGCTTATAGCAATGAAGAAAAAGTTGTCAAATATGTAGCAAATATGATGCCACTTCTTGCAGTAACAGCCTTACTAGACGGAATGACAGCAGTTCTTTCAGGTTTCTCTTTGTCCTCAATAACTATTTTGTTATATGAATCATTTTGTTGGTAAAGCAGCCGATGCAAGATATTAGATACAAAAAACGGAAACAATGAACACATATGTTAGAAATGATCGGTCGTTACAAATGATCACCTTCACTACGAATCAGGAACTGCTAGAGGATGTGGTTGGCAGAAAATTTGCGCATTTGTCAATCTTGGATCATACTATTTAGTCGGGATTCCGGCAGCTGTTGTATTAGCTTTTGTACTGCATATTGGCGGGAAGGTAAAAATTATGGTCCTTTCTAAGGGAAAATTTCTATCATATGATTTGGTTCAAACTGCTAATAAATATTTATAATGTAGGGGCTGTGGCTGGGAATTATATGTGCTCTCATTGTTCATTTGCTTTGTCTAACGATCATTACAATACGCACTGATTGGGAGAAAGAGGTGAAATTATTTAGTTTTCTTTATGATATGTTTCATCCTTTCGTTAAATATTCATGTGAATCATTGTTGGGTGCTGACAAGCCTTTATTTTTTCTAATGTATTTTGTTCAGGCAAAGAAGGCAACTCATAGAGTCTATAATGCAATAACAACAGAGATCTTAGTTTCATGA

Protein sequence

>MS.gene59997.t1

MFVGHLSELSLSGASMATSFASVTGFSLLVGMASALDTLCGQSYGAKQYRMLGIHMQRAMFILMIVAIPLAIIWANTRSILIFLGQDHEISTEAGNYAKLMVPSLFAYGLLQCLNRFLQTQNIVFPMMLSSAVTTLLHLPLCWYMVYKSGFGSGGAAIASSISYWVNVTILSLYVKFSPSCQKTWNGFSREALAPNNIPIFLKLAIPSAAMVCLEIWSFELVVLLSGLLPNPKLETSVLSICLNTTAVVWMIPFGLSGAISVRVSNELGAGNPQAARLAVCVVVVIAVIESILVGAVVILIRNIWGYAYSNEEKVVKYVANMMPLLAVTALLDGMTAVLSGTARGCGWQKICAFVNLGSYYLVGIPAAVVLAFVLHIGGKGLWLGIICALIVHLLCLTIITIRTDWEKEAKKATHRVYNAITTEILVS