Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044359.t1 | PNX57102.1 | 49.5 | 105 | 51 | 1 | 26 | 130 | 2 | 104 | 2.90E-16 | 95.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044359.t1 | A0A2K3JSS6 | 49.5 | 105 | 51 | 1 | 26 | 130 | 2 | 104 | 2.1e-16 | 95.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene77472 | MS.gene044359 | PPI |
| MS.gene70418 | MS.gene044359 | PPI |
| MS.gene044359 | MS.gene044326 | PPI |
| MS.gene044359 | MS.gene70427 | PPI |
| MS.gene77468 | MS.gene044359 | PPI |
| MS.gene25704 | MS.gene044359 | PPI |
| MS.gene044359 | MS.gene049263 | PPI |
| MS.gene045214 | MS.gene044359 | PPI |
| MS.gene71531 | MS.gene044359 | PPI |
| MS.gene044361 | MS.gene044359 | PPI |
| MS.gene77466 | MS.gene044359 | PPI |
| MS.gene044370 | MS.gene044359 | PPI |
| MS.gene70476 | MS.gene044359 | PPI |
| MS.gene70443 | MS.gene044359 | PPI |
| MS.gene044359 | MS.gene044323 | PPI |
| MS.gene79115 | MS.gene044359 | PPI |
| MS.gene71284 | MS.gene044359 | PPI |
| MS.gene70430 | MS.gene044359 | PPI |
| MS.gene71282 | MS.gene044359 | PPI |
| MS.gene70424 | MS.gene044359 | PPI |
| MS.gene71528 | MS.gene044359 | PPI |
| MS.gene044376 | MS.gene044359 | PPI |
| MS.gene044363 | MS.gene044359 | PPI |
| MS.gene044359 | MS.gene71524 | PPI |
| MS.gene77464 | MS.gene044359 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044359.t1 | MTR_3g083080 | 45.528 | 123 | 61 | 3 | 18 | 140 | 72 | 188 | 7.83e-24 | 94.0 |
| MS.gene044359.t1 | MTR_3g082420 | 36.170 | 188 | 84 | 7 | 2 | 153 | 30 | 217 | 1.17e-23 | 94.0 |
| MS.gene044359.t1 | MTR_3g080680 | 47.518 | 141 | 55 | 6 | 16 | 140 | 44 | 181 | 3.08e-23 | 92.4 |
| MS.gene044359.t1 | MTR_3g082340 | 40.940 | 149 | 73 | 5 | 7 | 140 | 57 | 205 | 1.63e-22 | 90.9 |
| MS.gene044359.t1 | MTR_3g083050 | 45.528 | 123 | 59 | 3 | 18 | 140 | 74 | 188 | 1.86e-20 | 85.1 |
| MS.gene044359.t1 | MTR_3g083030 | 45.528 | 123 | 59 | 4 | 18 | 140 | 97 | 211 | 2.06e-20 | 85.5 |
| MS.gene044359.t1 | MTR_4g055800 | 39.316 | 117 | 60 | 3 | 32 | 146 | 171 | 278 | 1.99e-16 | 75.9 |
| MS.gene044359.t1 | MTR_3g083150 | 39.252 | 107 | 57 | 4 | 38 | 139 | 91 | 194 | 2.05e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGTCTGTTCAGTCATATA+TGG | 0.283252 | 3.3:-69708943 | MS.gene044359:CDS |
| TGCGGTTGTGATCCCAATTC+AGG | 0.283996 | 3.3:+69711138 | None:intergenic |
| CAAAATGTCGAAACCTGAAT+TGG | 0.303444 | 3.3:-69711151 | None:intergenic |
| GTCAGCAATTAGTTCTTCTA+TGG | 0.315331 | 3.3:+69711059 | None:intergenic |
| CATATGGCCATCTACTCCTT+TGG | 0.316119 | 3.3:+69708856 | None:intergenic |
| AGTTGTTGTAGCATGGATAT+TGG | 0.329322 | 3.3:+69710565 | None:intergenic |
| TCTCTCCGACCTTGCTTTGA+AGG | 0.333684 | 3.3:-69710822 | MS.gene044359:CDS |
| GCTATCATGGAGTACGGATA+TGG | 0.374634 | 3.3:-69708989 | MS.gene044359:CDS |
| ATATGGCCATCTACTCCTTT+GGG | 0.382707 | 3.3:+69708857 | None:intergenic |
| CTTTAATATTCAGGCTATCA+TGG | 0.384046 | 3.3:-69709002 | MS.gene044359:intron |
| CCATGCTACAACAACTTTCC+AGG | 0.393947 | 3.3:-69710558 | MS.gene044359:CDS |
| AATCAATCTTTATTCCCATA+TGG | 0.413666 | 3.3:+69708840 | None:intergenic |
| ACTGCTATTGCCTGTGGTGG+TGG | 0.454132 | 3.3:-69710635 | MS.gene044359:CDS |
| AAGATCTTCGGTTATGTCAA+TGG | 0.457332 | 3.3:+69710862 | None:intergenic |
| GGATTACAATCAAAAGAATC+AGG | 0.463360 | 3.3:-69710801 | MS.gene044359:intron |
| TCTAGTCCCAAAGGAGTAGA+TGG | 0.465969 | 3.3:-69708863 | MS.gene044359:CDS |
| CAAAGGAGTAGATGGCCATA+TGG | 0.473421 | 3.3:-69708855 | MS.gene044359:CDS |
| TGGGAAGAAAGAATGATTGT+AGG | 0.476056 | 3.3:-69708923 | MS.gene044359:CDS |
| CCACATAGCTCTAGAACTGC+TGG | 0.483421 | 3.3:+69710896 | None:intergenic |
| CAGTCTGTTCAGTCATATAT+GGG | 0.485424 | 3.3:-69708942 | MS.gene044359:CDS |
| AAAATGTCGAAACCTGAATT+GGG | 0.487541 | 3.3:-69711150 | MS.gene044359:CDS |
| CGACGACGATGACGAGTTTG+CGG | 0.511755 | 3.3:-69711094 | MS.gene044359:CDS |
| AGATCTTCGGTTATGTCAAT+GGG | 0.514070 | 3.3:+69710863 | None:intergenic |
| CGAGTTTGCGGAAGAGAAAG+AGG | 0.530206 | 3.3:-69711082 | MS.gene044359:CDS |
| AAAGGAGTAGATGGCCATAT+GGG | 0.534234 | 3.3:-69708854 | MS.gene044359:CDS |
| GAGAGTAGGACGAAGATCTT+CGG | 0.537282 | 3.3:+69710850 | None:intergenic |
| GATTGTAATCCTTCAAAGCA+AGG | 0.537388 | 3.3:+69710813 | None:intergenic |
| CATCATCCCATACTTCGGCC+TGG | 0.538029 | 3.3:+69710540 | None:intergenic |
| TCCGAATCGTATTTCGATTG+CGG | 0.541557 | 3.3:+69711120 | None:intergenic |
| CTTACTTGCTCTAGTCCCAA+AGG | 0.556739 | 3.3:-69708872 | MS.gene044359:CDS |
| CCTGGAAAGTTGTTGTAGCA+TGG | 0.566074 | 3.3:+69710558 | None:intergenic |
| ACCGCAATCGAAATACGATT+CGG | 0.566744 | 3.3:-69711121 | MS.gene044359:CDS |
| ATACAAATCACCACCACCAC+AGG | 0.568911 | 3.3:+69710625 | None:intergenic |
| ATTCAGGCTATCATGGAGTA+CGG | 0.569803 | 3.3:-69708995 | MS.gene044359:intron |
| TCGGAGAGAGTAACGAGAGT+AGG | 0.570755 | 3.3:+69710836 | None:intergenic |
| GTTGTAGCATGGATATTGGA+AGG | 0.573026 | 3.3:+69710569 | None:intergenic |
| ACCACTGCTATTGCCTGTGG+TGG | 0.600684 | 3.3:-69710638 | MS.gene044359:CDS |
| TGTACCACTGCTATTGCCTG+TGG | 0.630788 | 3.3:-69710641 | MS.gene044359:CDS |
| CCAGCAGTTCTAGAGCTATG+TGG | 0.642746 | 3.3:-69710896 | MS.gene044359:CDS |
| TAGCAGTGGTACACTTGACA+AGG | 0.661404 | 3.3:+69710651 | None:intergenic |
| ACCACCACAGGCAATAGCAG+TGG | 0.671651 | 3.3:+69710637 | None:intergenic |
| GTAATCCTTCAAAGCAAGGT+CGG | 0.676410 | 3.3:+69710817 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTAAAACTTTTTAAC+CGG | + | chr3.3:69710214-69710233 | None:intergenic | 10.0% |
| !! | AATTGTTCTTCTTAATTATT+AGG | - | chr3.3:69709289-69709308 | MS.gene044359:intron | 15.0% |
| !! | ATTGTTCTTCTTAATTATTA+GGG | - | chr3.3:69709290-69709309 | MS.gene044359:intron | 15.0% |
| !!! | TTTTCTTGGAAATTTATAAA+TGG | - | chr3.3:69709556-69709575 | MS.gene044359:intron | 15.0% |
| !! | AAAGTCAAATACAAAATCAA+TGG | + | chr3.3:69709597-69709616 | None:intergenic | 20.0% |
| !! | AAGAAAAGATTAAACATGTA+AGG | + | chr3.3:69709543-69709562 | None:intergenic | 20.0% |
| !! | ATCTTAATAATATACAACCA+TGG | + | chr3.3:69709765-69709784 | None:intergenic | 20.0% |
| !! | ATTAAATATCGTAACTTCAA+TGG | + | chr3.3:69709638-69709657 | None:intergenic | 20.0% |
| !!! | AAATCATATTTTAGGAATGA+GGG | + | chr3.3:69710744-69710763 | None:intergenic | 20.0% |
| !!! | TTACATGTTTAATCTTTTCT+TGG | - | chr3.3:69709542-69709561 | MS.gene044359:intron | 20.0% |
| ! | AATCAATCTTTATTCCCATA+TGG | + | chr3.3:69711148-69711167 | None:intergenic | 25.0% |
| ! | AGATTTATTAGAACAAACTC+TGG | + | chr3.3:69710867-69710886 | None:intergenic | 25.0% |
| ! | CAACATTATTCAAACATACA+AGG | + | chr3.3:69710700-69710719 | None:intergenic | 25.0% |
| ! | CCATATAGATAATCAGAATT+CGG | - | chr3.3:69710342-69710361 | MS.gene044359:intron | 25.0% |
| ! | GAAGTTACGATATTTAATTG+TGG | - | chr3.3:69709640-69709659 | MS.gene044359:intron | 25.0% |
| ! | GAGATAAGTTACAATGAATA+AGG | + | chr3.3:69710825-69710844 | None:intergenic | 25.0% |
| ! | GATTTATTAGAACAAACTCT+GGG | + | chr3.3:69710866-69710885 | None:intergenic | 25.0% |
| ! | GGATGAAATTATTATTACCA+AGG | + | chr3.3:69709522-69709541 | None:intergenic | 25.0% |
| ! | GTTCTATCACTTTAATATTC+AGG | - | chr3.3:69710974-69710993 | MS.gene044359:intron | 25.0% |
| ! | TAAAATCTAATACACTACCT+TGG | - | chr3.3:69709502-69709521 | MS.gene044359:intron | 25.0% |
| ! | TAAATCTAACTTATCTCTGT+TGG | - | chr3.3:69710880-69710899 | MS.gene044359:CDS | 25.0% |
| ! | TCTAATTGTTCAATCATTTC+TGG | - | chr3.3:69709937-69709956 | MS.gene044359:intron | 25.0% |
| ! | TGATTTATTAGAACAAACTC+TGG | + | chr3.3:69710919-69710938 | None:intergenic | 25.0% |
| ! | TTACTTTAACACTGAATACA+TGG | - | chr3.3:69710240-69710259 | MS.gene044359:intron | 25.0% |
| !! | AAAATTTGATGATTTGGCAT+TGG | - | chr3.3:69709694-69709713 | MS.gene044359:intron | 25.0% |
| !! | ACCTTGAAAATTTGATGATT+TGG | - | chr3.3:69709688-69709707 | MS.gene044359:intron | 25.0% |
| !! | ACTGTGTTTTTCACTTTATT+TGG | - | chr3.3:69710021-69710040 | MS.gene044359:intron | 25.0% |
| !! | GGTAGTGTATTAGATTTTAA+TGG | + | chr3.3:69709501-69709520 | None:intergenic | 25.0% |
| !!! | CTGTGTTTTTCACTTTATTT+GGG | - | chr3.3:69710022-69710041 | MS.gene044359:intron | 25.0% |
| !!! | GAAATCATATTTTAGGAATG+AGG | + | chr3.3:69710745-69710764 | None:intergenic | 25.0% |
| !!! | GTATAGATCGTATTTTTGTA+TGG | + | chr3.3:69709815-69709834 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTCACTTTATTTG+GGG | - | chr3.3:69710023-69710042 | MS.gene044359:intron | 25.0% |
| ACAAAGGCAATATCAAATCT+AGG | + | chr3.3:69710586-69710605 | None:intergenic | 30.0% | |
| AGACATATCGTATATTACAG+AGG | - | chr3.3:69710474-69710493 | MS.gene044359:intron | 30.0% | |
| ATAGATAGTTTCGTACACTT+AGG | + | chr3.3:69708972-69708991 | None:intergenic | 30.0% | |
| CCGAATTCTGATTATCTATA+TGG | + | chr3.3:69710345-69710364 | None:intergenic | 30.0% | |
| CCTATATTCCTATTAGCAAT+GGG | + | chr3.3:69710503-69710522 | None:intergenic | 30.0% | |
| CTTTAATATTCAGGCTATCA+TGG | - | chr3.3:69710983-69711002 | MS.gene044359:intron | 30.0% | |
| GAATACATGGCAAATCAAAT+CGG | - | chr3.3:69710253-69710272 | MS.gene044359:intron | 30.0% | |
| GACCTAATATCAAACTACAA+AGG | + | chr3.3:69710602-69710621 | None:intergenic | 30.0% | |
| GGATTACAATCAAAAGAATC+AGG | - | chr3.3:69709184-69709203 | MS.gene044359:intron | 30.0% | |
| TCATTGTAACTTATCTCTGT+TGG | - | chr3.3:69710828-69710847 | MS.gene044359:CDS | 30.0% | |
| TCCTATATTCCTATTAGCAA+TGG | + | chr3.3:69710504-69710523 | None:intergenic | 30.0% | |
| TCCTTGCTTGTAATAAAAAC+AGG | + | chr3.3:69710136-69710155 | None:intergenic | 30.0% | |
| TCTCTCTCTTTCTCTTAATT+GGG | - | chr3.3:69710620-69710639 | MS.gene044359:CDS | 30.0% | |
| TGATAACTGAACTTGTATCA+GGG | - | chr3.3:69710418-69710437 | MS.gene044359:intron | 30.0% | |
| TGCCTTTGTAGTTTGATATT+AGG | - | chr3.3:69710597-69710616 | MS.gene044359:CDS | 30.0% | |
| ! | AATCAAGTTCTAGCAATGAT+AGG | + | chr3.3:69710095-69710114 | None:intergenic | 30.0% |
| ! | ATTTTCTTTAGCAGTTGTGA+TGG | + | chr3.3:69710301-69710320 | None:intergenic | 30.0% |
| ! | GCCAAATCATCAAATTTTCA+AGG | + | chr3.3:69709692-69709711 | None:intergenic | 30.0% |
| ! | TCAAACTAGACTTTGTTTGT+TGG | - | chr3.3:69709968-69709987 | MS.gene044359:intron | 30.0% |
| ! | TGCTGAGGAAATCATATTTT+AGG | + | chr3.3:69710752-69710771 | None:intergenic | 30.0% |
| ! | TTGATAACTGAACTTGTATC+AGG | - | chr3.3:69710417-69710436 | MS.gene044359:intron | 30.0% |
| !!! | ACCTGTTTTTATTACAAGCA+AGG | - | chr3.3:69710132-69710151 | MS.gene044359:intron | 30.0% |
| AAGATCTTCGGTTATGTCAA+TGG | + | chr3.3:69709126-69709145 | None:intergenic | 35.0% | |
| AAGCATGACCAAATGCTTTA+CGG | + | chr3.3:69710532-69710551 | None:intergenic | 35.0% | |
| ACAGTCTGTTCAGTCATATA+TGG | - | chr3.3:69711042-69711061 | MS.gene044359:CDS | 35.0% | |
| AGATCTTCGGTTATGTCAAT+GGG | + | chr3.3:69709125-69709144 | None:intergenic | 35.0% | |
| AGTTGTTGTAGCATGGATAT+TGG | + | chr3.3:69709423-69709442 | None:intergenic | 35.0% | |
| ATATGAAGAGTAGAGAGACA+CGG | + | chr3.3:69709861-69709880 | None:intergenic | 35.0% | |
| ATCATCATCATCCCATACTT+CGG | + | chr3.3:69709453-69709472 | None:intergenic | 35.0% | |
| CACTGTAAAAGAATAACGAG+AGG | + | chr3.3:69710799-69710818 | None:intergenic | 35.0% | |
| CAGTCTGTTCAGTCATATAT+GGG | - | chr3.3:69711043-69711062 | MS.gene044359:CDS | 35.0% | |
| CCCATTGCTAATAGGAATAT+AGG | - | chr3.3:69710500-69710519 | MS.gene044359:intron | 35.0% | |
| CGGTAAATATGCAAATCATC+AGG | - | chr3.3:69710362-69710381 | MS.gene044359:intron | 35.0% | |
| CTAGCAATGATAGGTAATAG+TGG | + | chr3.3:69710086-69710105 | None:intergenic | 35.0% | |
| GAGGTCTAAAAATTGTTCCA+TGG | - | chr3.3:69709745-69709764 | MS.gene044359:intron | 35.0% | |
| GATTGTAATCCTTCAAAGCA+AGG | + | chr3.3:69709175-69709194 | None:intergenic | 35.0% | |
| GCATATCAAGAATGTCTACA+GGG | - | chr3.3:69710552-69710571 | MS.gene044359:intron | 35.0% | |
| GTAATAGTGGCTTATCACAA+GGG | + | chr3.3:69710073-69710092 | None:intergenic | 35.0% | |
| GTCTCTCTCTTTCTCTTAAT+TGG | - | chr3.3:69710619-69710638 | MS.gene044359:CDS | 35.0% | |
| TAATTGGGCTTTCTTAGTGT+TGG | - | chr3.3:69710635-69710654 | MS.gene044359:CDS | 35.0% | |
| TGCATATCAAGAATGTCTAC+AGG | - | chr3.3:69710551-69710570 | MS.gene044359:intron | 35.0% | |
| TGGGAAGAAAGAATGATTGT+AGG | - | chr3.3:69711062-69711081 | MS.gene044359:CDS | 35.0% | |
| ! | ACTCTTCATATTTGAAGCCT+AGG | - | chr3.3:69709870-69709889 | MS.gene044359:intron | 35.0% |
| ! | GGAATAAACCGTAAAGCATT+TGG | - | chr3.3:69710521-69710540 | MS.gene044359:intron | 35.0% |
| ! | GTCAGCAATTAGTTCTTCTA+TGG | + | chr3.3:69708929-69708948 | None:intergenic | 35.0% |
| ! | TTTGTTTGTTGGCAACACTT+TGG | - | chr3.3:69709979-69709998 | MS.gene044359:intron | 35.0% |
| !! | ATGGCAAATCAAATCGGTTT+TGG | - | chr3.3:69710259-69710278 | MS.gene044359:intron | 35.0% |
| AAAAGAATCATGCTGCAGTC+CGG | - | chr3.3:69710192-69710211 | MS.gene044359:intron | 40.0% | |
| AAAGGAGTAGATGGCCATAT+GGG | - | chr3.3:69711131-69711150 | MS.gene044359:CDS | 40.0% | |
| AAGAATAACGAGAGGATCAG+AGG | + | chr3.3:69710791-69710810 | None:intergenic | 40.0% | |
| ACCGCAATCGAAATACGATT+CGG | - | chr3.3:69708864-69708883 | MS.gene044359:CDS | 40.0% | |
| AGTGTGACACATTAGATTGG+AGG | - | chr3.3:69709726-69709745 | MS.gene044359:intron | 40.0% | |
| ATATGGCCATCTACTCCTTT+GGG | + | chr3.3:69711131-69711150 | None:intergenic | 40.0% | |
| ATTCAGGCTATCATGGAGTA+CGG | - | chr3.3:69710990-69711009 | MS.gene044359:intron | 40.0% | |
| CTAAAGAAAATGTTGCGCAG+GGG | - | chr3.3:69710310-69710329 | MS.gene044359:intron | 40.0% | |
| GCTAAAGAAAATGTTGCGCA+GGG | - | chr3.3:69710309-69710328 | MS.gene044359:intron | 40.0% | |
| GGTAATAGTGGCTTATCACA+AGG | + | chr3.3:69710074-69710093 | None:intergenic | 40.0% | |
| GTAATCCTTCAAAGCAAGGT+CGG | + | chr3.3:69709171-69709190 | None:intergenic | 40.0% | |
| GTTGTAGCATGGATATTGGA+AGG | + | chr3.3:69709419-69709438 | None:intergenic | 40.0% | |
| TCCGAATCGTATTTCGATTG+CGG | + | chr3.3:69708868-69708887 | None:intergenic | 40.0% | |
| TGCTAAAGAAAATGTTGCGC+AGG | - | chr3.3:69710308-69710327 | MS.gene044359:intron | 40.0% | |
| TTTGTTGGCAACACTTTGGA+TGG | - | chr3.3:69709983-69710002 | MS.gene044359:intron | 40.0% | |
| ! | AATTGGCTTCAAAGTTGCTG+AGG | + | chr3.3:69710767-69710786 | None:intergenic | 40.0% |
| ! | CTGAACTTGTATCAGGGTTT+TGG | - | chr3.3:69710424-69710443 | MS.gene044359:intron | 40.0% |
| ! | GAGAGTGTGACACATTAGAT+TGG | - | chr3.3:69709723-69709742 | MS.gene044359:intron | 40.0% |
| ! | TGATTCTGCTGACTATACAC+AGG | - | chr3.3:69709046-69709065 | MS.gene044359:intron | 40.0% |
| AAAATGTTGCGCAGGGGATT+AGG | - | chr3.3:69710316-69710335 | MS.gene044359:intron | 45.0% | |
| AACTTTCCAGGCCGAAGTAT+GGG | - | chr3.3:69709439-69709458 | MS.gene044359:intron | 45.0% | |
| ACGAGAGGATCAGAGGTAAT+TGG | + | chr3.3:69710784-69710803 | None:intergenic | 45.0% | |
| AGAGGCAACCCATTGCTAAT+AGG | - | chr3.3:69710492-69710511 | MS.gene044359:intron | 45.0% | |
| ATACAAATCACCACCACCAC+AGG | + | chr3.3:69709363-69709382 | None:intergenic | 45.0% | |
| CAAAGGAGTAGATGGCCATA+TGG | - | chr3.3:69711130-69711149 | MS.gene044359:CDS | 45.0% | |
| CATATGGCCATCTACTCCTT+TGG | + | chr3.3:69711132-69711151 | None:intergenic | 45.0% | |
| CCATGCTACAACAACTTTCC+AGG | - | chr3.3:69709427-69709446 | MS.gene044359:intron | 45.0% | |
| CCTGGAAAGTTGTTGTAGCA+TGG | + | chr3.3:69709430-69709449 | None:intergenic | 45.0% | |
| CTTACTTGCTCTAGTCCCAA+AGG | - | chr3.3:69711113-69711132 | MS.gene044359:CDS | 45.0% | |
| GAAACAGAGAGATTCAGCCT+AGG | + | chr3.3:69709890-69709909 | None:intergenic | 45.0% | |
| GAGAGTAGGACGAAGATCTT+CGG | + | chr3.3:69709138-69709157 | None:intergenic | 45.0% | |
| GCTATCATGGAGTACGGATA+TGG | - | chr3.3:69710996-69711015 | MS.gene044359:intron | 45.0% | |
| TAGCAGTGGTACACTTGACA+AGG | + | chr3.3:69709337-69709356 | None:intergenic | 45.0% | |
| TCTAGTCCCAAAGGAGTAGA+TGG | - | chr3.3:69711122-69711141 | MS.gene044359:CDS | 45.0% | |
| ! | AACAGGTTCTAGCATTGCTG+AGG | + | chr3.3:69710119-69710138 | None:intergenic | 45.0% |
| ! | TGATGATGATGATGCCGATG+AGG | - | chr3.3:69709463-69709482 | MS.gene044359:intron | 45.0% |
| CAACTTTCCAGGCCGAAGTA+TGG | - | chr3.3:69709438-69709457 | MS.gene044359:intron | 50.0% | |
| CGAGTTTGCGGAAGAGAAAG+AGG | - | chr3.3:69708903-69708922 | MS.gene044359:CDS | 50.0% | |
| GGCACACGATATGACCTCAT+CGG | + | chr3.3:69709480-69709499 | None:intergenic | 50.0% | |
| TCGGAGAGAGTAACGAGAGT+AGG | + | chr3.3:69709152-69709171 | None:intergenic | 50.0% | |
| TCTCTCCGACCTTGCTTTGA+AGG | - | chr3.3:69709163-69709182 | MS.gene044359:intron | 50.0% | |
| TGCGGTTGTGATCCCAATTC+AGG | + | chr3.3:69708850-69708869 | None:intergenic | 50.0% | |
| TGTACCACTGCTATTGCCTG+TGG | - | chr3.3:69709344-69709363 | MS.gene044359:intron | 50.0% | |
| !! | CCACATAGCTCTAGAACTGC+TGG | + | chr3.3:69709092-69709111 | None:intergenic | 50.0% |
| !! | CCAGCAGTTCTAGAGCTATG+TGG | - | chr3.3:69709089-69709108 | MS.gene044359:intron | 50.0% |
| ACCACCACAGGCAATAGCAG+TGG | + | chr3.3:69709351-69709370 | None:intergenic | 55.0% | |
| ACCACTGCTATTGCCTGTGG+TGG | - | chr3.3:69709347-69709366 | MS.gene044359:intron | 55.0% | |
| ACTGCTATTGCCTGTGGTGG+TGG | - | chr3.3:69709350-69709369 | MS.gene044359:intron | 55.0% | |
| ATGTTGCGCAGGGGATTAGG+TGG | - | chr3.3:69710319-69710338 | MS.gene044359:intron | 55.0% | |
| CATCATCCCATACTTCGGCC+TGG | + | chr3.3:69709448-69709467 | None:intergenic | 55.0% | |
| CGACGACGATGACGAGTTTG+CGG | - | chr3.3:69708891-69708910 | MS.gene044359:CDS | 55.0% | |
| ! | TGTTGGTAGACGCTGCACTG+TGG | - | chr3.3:69710652-69710671 | MS.gene044359:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 69708838 | 69711169 | 69708838 | ID=MS.gene044359 |
| chr3.3 | mRNA | 69708838 | 69711169 | 69708838 | ID=MS.gene044359.t1;Parent=MS.gene044359 |
| chr3.3 | exon | 69711032 | 69711169 | 69711032 | ID=MS.gene044359.t1.exon1;Parent=MS.gene044359.t1 |
| chr3.3 | CDS | 69711032 | 69711169 | 69711032 | ID=cds.MS.gene044359.t1;Parent=MS.gene044359.t1 |
| chr3.3 | exon | 69710802 | 69710939 | 69710802 | ID=MS.gene044359.t1.exon2;Parent=MS.gene044359.t1 |
| chr3.3 | CDS | 69710802 | 69710939 | 69710802 | ID=cds.MS.gene044359.t1;Parent=MS.gene044359.t1 |
| chr3.3 | exon | 69710553 | 69710696 | 69710553 | ID=MS.gene044359.t1.exon3;Parent=MS.gene044359.t1 |
| chr3.3 | CDS | 69710553 | 69710696 | 69710553 | ID=cds.MS.gene044359.t1;Parent=MS.gene044359.t1 |
| chr3.3 | exon | 69708838 | 69709011 | 69708838 | ID=MS.gene044359.t1.exon4;Parent=MS.gene044359.t1 |
| chr3.3 | CDS | 69708838 | 69709011 | 69708838 | ID=cds.MS.gene044359.t1;Parent=MS.gene044359.t1 |
| Gene Sequence |
| Protein sequence |
