Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70476.t1 | XP_003601497.1 | 83.9 | 224 | 31 | 3 | 1 | 220 | 1 | 223 | 7.30E-101 | 376.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70476.t1 | G7J851 | 83.9 | 224 | 31 | 3 | 1 | 220 | 1 | 223 | 5.3e-101 | 376.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70476.t1 | MTR_3g082340 | 83.929 | 224 | 31 | 3 | 1 | 220 | 1 | 223 | 2.81e-135 | 379 |
MS.gene70476.t1 | MTR_3g082420 | 76.233 | 223 | 47 | 3 | 3 | 220 | 1 | 222 | 6.98e-121 | 342 |
MS.gene70476.t1 | MTR_3g080680 | 43.415 | 205 | 100 | 7 | 24 | 220 | 3 | 199 | 6.49e-39 | 133 |
MS.gene70476.t1 | MTR_3g083030 | 39.834 | 241 | 111 | 9 | 1 | 219 | 1 | 229 | 2.93e-36 | 127 |
MS.gene70476.t1 | MTR_3g083050 | 41.546 | 207 | 99 | 6 | 1 | 203 | 1 | 189 | 4.26e-34 | 121 |
MS.gene70476.t1 | MTR_3g083080 | 36.607 | 224 | 118 | 8 | 1 | 219 | 1 | 205 | 7.49e-31 | 112 |
MS.gene70476.t1 | MTR_8g461300 | 38.889 | 198 | 105 | 7 | 30 | 219 | 9 | 198 | 4.10e-23 | 92.8 |
MS.gene70476.t1 | MTR_4g055800 | 39.744 | 156 | 74 | 5 | 52 | 203 | 134 | 273 | 2.77e-21 | 89.7 |
MS.gene70476.t1 | MTR_3g083150 | 36.283 | 226 | 122 | 11 | 1 | 219 | 1 | 211 | 4.01e-21 | 87.8 |
MS.gene70476.t1 | MTR_3g086030 | 45.783 | 83 | 39 | 2 | 48 | 126 | 15 | 95 | 1.26e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 67 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGAATTCGGAACCGGAATT+AGG | 0.215538 | 3.1:-66725160 | MS.gene70476:CDS |
CCCTGCTTTAACAACTTTCC+AGG | 0.234656 | 3.1:-66724449 | MS.gene70476:CDS |
CCTAATTCCGGTTCCGAATT+CGG | 0.263860 | 3.1:+66725160 | None:intergenic |
GAACCCCGCGGTTTCGGTTT+GGG | 0.291128 | 3.1:+66725124 | None:intergenic |
AACTTTCCAGGCCCAAGTTT+GGG | 0.324224 | 3.1:-66724437 | MS.gene70476:CDS |
CGAAACCGCGGGGTTCTGTT+TGG | 0.344981 | 3.1:-66725117 | MS.gene70476:CDS |
CAAACAGAACCCCGCGGTTT+CGG | 0.345423 | 3.1:+66725118 | None:intergenic |
TGGAGTGTATTAGACTTTAA+TGG | 0.348558 | 3.1:+66724378 | None:intergenic |
CAACTTTCCAGGCCCAAGTT+TGG | 0.351722 | 3.1:-66724438 | MS.gene70476:CDS |
TTCGTGTTGCAGAATGTCTA+TGG | 0.360071 | 3.1:-66725251 | None:intergenic |
GAAACCGCGGGGTTCTGTTT+GGG | 0.361275 | 3.1:-66725116 | MS.gene70476:CDS |
TCTTGTTCCGATCCTAATTC+CGG | 0.362062 | 3.1:+66725148 | None:intergenic |
TATCAAAACCGTCCCAAACT+TGG | 0.364944 | 3.1:+66724425 | None:intergenic |
AGAACCCCGCGGTTTCGGTT+TGG | 0.382583 | 3.1:+66725123 | None:intergenic |
CCGCCACATAACAGTGTTCC+TGG | 0.391171 | 3.1:+66724785 | None:intergenic |
AAGAAGGAAGATGCCGAATT+CGG | 0.415849 | 3.1:-66725173 | MS.gene70476:CDS |
GCGGGGTTCTGTTTGGGAGG+AGG | 0.429584 | 3.1:-66725110 | MS.gene70476:CDS |
GAAGATGCCGAATTCGGAAC+CGG | 0.437745 | 3.1:-66725167 | MS.gene70476:CDS |
CAGTGCAAACAATAATAATC+AGG | 0.440939 | 3.1:-66724687 | MS.gene70476:intron |
GCCTGGAAAGTTGTTAAAGC+AGG | 0.451734 | 3.1:+66724448 | None:intergenic |
ATCGGTTATGAAGAGGGGTT+GGG | 0.467286 | 3.1:+66724760 | None:intergenic |
AACCGTCCCAAACTTGGGCC+TGG | 0.470738 | 3.1:+66724431 | None:intergenic |
TGAACTCTCCCGGCTTGCAT+TGG | 0.475836 | 3.1:-66724717 | MS.gene70476:CDS |
TAACAGTGTTCCTGGCGGAC+GGG | 0.484854 | 3.1:+66724793 | None:intergenic |
TTATCACAAATATATATGTA+AGG | 0.491342 | 3.1:+66725031 | None:intergenic |
GTGGGAGTTCGTGTGACTGC+GGG | 0.493011 | 3.1:+66725211 | None:intergenic |
ACTTGATGAAACTCAAATGT+TGG | 0.500719 | 3.1:+66724571 | None:intergenic |
CATCGGTTATGAAGAGGGGT+TGG | 0.502034 | 3.1:+66724759 | None:intergenic |
AACAGTGTTCCTGGCGGACG+GGG | 0.502549 | 3.1:+66724794 | None:intergenic |
GGGAGAGTTCATTGAGAGTA+GGG | 0.505718 | 3.1:+66724729 | None:intergenic |
ATCAAAACCGTCCCAAACTT+GGG | 0.509684 | 3.1:+66724426 | None:intergenic |
ATAGATAATTCACTCAACTC+TGG | 0.516445 | 3.1:+66725073 | None:intergenic |
GTAATAGTCCAATGCAAGCC+GGG | 0.518943 | 3.1:+66724709 | None:intergenic |
AGCAGCAATACCAACATCAT+AGG | 0.521515 | 3.1:+66724537 | None:intergenic |
CGGGAGAGTTCATTGAGAGT+AGG | 0.523682 | 3.1:+66724728 | None:intergenic |
CGGAAAACTGCAGAGAAAGA+AGG | 0.523922 | 3.1:-66725189 | MS.gene70476:CDS |
ATCTTCATCGGTTATGAAGA+GGG | 0.524106 | 3.1:+66724754 | None:intergenic |
TATGATGTTGGTATTGCTGC+TGG | 0.533144 | 3.1:-66724535 | MS.gene70476:CDS |
TGTAATAGTCCAATGCAAGC+CGG | 0.540454 | 3.1:+66724708 | None:intergenic |
GAGAGTAGGGCGATCTTCAT+CGG | 0.549057 | 3.1:+66724742 | None:intergenic |
ATAACAGTGTTCCTGGCGGA+CGG | 0.549223 | 3.1:+66724792 | None:intergenic |
ATGTCTATGGAATTCAATAC+CGG | 0.569805 | 3.1:-66725238 | MS.gene70476:CDS |
CGCAGTCACACGAACTCCCA+CGG | 0.573058 | 3.1:-66725209 | MS.gene70476:CDS |
ACCGCGGGGTTCTGTTTGGG+AGG | 0.573859 | 3.1:-66725113 | MS.gene70476:CDS |
TTCCAGGCCCAAGTTTGGGA+CGG | 0.574885 | 3.1:-66724433 | MS.gene70476:CDS |
AGAACCCAAACCGAAACCGC+GGG | 0.577512 | 3.1:-66725128 | MS.gene70476:CDS |
CCTGGAAAGTTGTTAAAGCA+GGG | 0.579311 | 3.1:+66724449 | None:intergenic |
CTACTCTCAATGAACTCTCC+CGG | 0.588355 | 3.1:-66724727 | MS.gene70476:CDS |
CGTGGGAGTTCGTGTGACTG+CGG | 0.590663 | 3.1:+66725210 | None:intergenic |
TCGTGTGACTGCGGGCACGC+CGG | 0.604081 | 3.1:+66725219 | None:intergenic |
GAGCATTTAGAGCGTTCTCG+CGG | 0.611708 | 3.1:-66724959 | MS.gene70476:CDS |
CCGCCAGGAACACTGTTATG+TGG | 0.616088 | 3.1:-66724788 | MS.gene70476:CDS |
TTCGGAACCGGAATTAGGAT+CGG | 0.619721 | 3.1:-66725155 | MS.gene70476:CDS |
TGGAAAGTTGTTAAAGCAGG+GGG | 0.622860 | 3.1:+66724451 | None:intergenic |
ACAGTGTTCCTGGCGGACGG+GGG | 0.624136 | 3.1:+66724795 | None:intergenic |
GATCTTCATCGGTTATGAAG+AGG | 0.624382 | 3.1:+66724753 | None:intergenic |
GTCAAGTGTACCTATGATGT+TGG | 0.629074 | 3.1:-66724547 | MS.gene70476:CDS |
CTGGAAAGTTGTTAAAGCAG+GGG | 0.630786 | 3.1:+66724450 | None:intergenic |
TCTTCATCGGTTATGAAGAG+GGG | 0.634517 | 3.1:+66724755 | None:intergenic |
AAGAACCCAAACCGAAACCG+CGG | 0.646068 | 3.1:-66725129 | MS.gene70476:CDS |
TAAACTCAGGAAGAAACTAG+AGG | 0.667176 | 3.1:-66724993 | MS.gene70476:CDS |
TTGTGTACAAGAATAAACTC+AGG | 0.668106 | 3.1:-66725006 | MS.gene70476:CDS |
CCAGGAACACTGTTATGTGG+CGG | 0.691865 | 3.1:-66724785 | MS.gene70476:CDS |
GAACCCAAACCGAAACCGCG+GGG | 0.744268 | 3.1:-66725127 | MS.gene70476:CDS |
TCCTCCCAAACAGAACCCCG+CGG | 0.747056 | 3.1:+66725112 | None:intergenic |
GGAAAGTTGTTAAAGCAGGG+GGG | 0.752617 | 3.1:+66724452 | None:intergenic |
CCACATAACAGTGTTCCTGG+CGG | 0.759130 | 3.1:+66724788 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTCTTCTTAATTAATTATT+AGG | - | chr3.1:66725029-66725048 | MS.gene70476:CDS | 15.0% |
!! | TTATCACAAATATATATGTA+AGG | + | chr3.1:66724597-66724616 | None:intergenic | 15.0% |
!!! | TAATTAATTTTGATTCTTTC+TGG | - | chr3.1:66724769-66724788 | MS.gene70476:CDS | 15.0% |
ACTTGATGAAACTCAAATGT+TGG | + | chr3.1:66725057-66725076 | None:intergenic | 30.0% | |
ATAGATAATTCACTCAACTC+TGG | + | chr3.1:66724555-66724574 | None:intergenic | 30.0% | |
ATGTCTATGGAATTCAATAC+CGG | - | chr3.1:66724387-66724406 | MS.gene70476:CDS | 30.0% | |
CAGTGCAAACAATAATAATC+AGG | - | chr3.1:66724938-66724957 | MS.gene70476:intron | 30.0% | |
TTGTGTACAAGAATAAACTC+AGG | - | chr3.1:66724619-66724638 | MS.gene70476:intron | 30.0% | |
TAAACTCAGGAAGAAACTAG+AGG | - | chr3.1:66724632-66724651 | MS.gene70476:intron | 35.0% | |
! | ATCTTCATCGGTTATGAAGA+GGG | + | chr3.1:66724874-66724893 | None:intergenic | 35.0% |
!! | GTCTTTTGCATTAGCTTGAA+AGG | + | chr3.1:66725133-66725152 | None:intergenic | 35.0% |
AACACAACACAACACAACAC+AGG | - | chr3.1:66724794-66724813 | MS.gene70476:CDS | 40.0% | |
AAGAAGGAAGATGCCGAATT+CGG | - | chr3.1:66724452-66724471 | MS.gene70476:CDS | 40.0% | |
AGCAGCAATACCAACATCAT+AGG | + | chr3.1:66725091-66725110 | None:intergenic | 40.0% | |
ATAGACGCATACGTACACTT+AGG | + | chr3.1:66724692-66724711 | None:intergenic | 40.0% | |
ATCAAAACCGTCCCAAACTT+GGG | + | chr3.1:66725202-66725221 | None:intergenic | 40.0% | |
CCTGGAAAGTTGTTAAAGCA+GGG | + | chr3.1:66725179-66725198 | None:intergenic | 40.0% | |
CTGGAAAGTTGTTAAAGCAG+GGG | + | chr3.1:66725178-66725197 | None:intergenic | 40.0% | |
GTCAAGTGTACCTATGATGT+TGG | - | chr3.1:66725078-66725097 | MS.gene70476:CDS | 40.0% | |
TATCAAAACCGTCCCAAACT+TGG | + | chr3.1:66725203-66725222 | None:intergenic | 40.0% | |
TATGATGTTGGTATTGCTGC+TGG | - | chr3.1:66725090-66725109 | MS.gene70476:CDS | 40.0% | |
TCTTGTTCCGATCCTAATTC+CGG | + | chr3.1:66724480-66724499 | None:intergenic | 40.0% | |
TGGAAAGTTGTTAAAGCAGG+GGG | + | chr3.1:66725177-66725196 | None:intergenic | 40.0% | |
TGTAATAGTCCAATGCAAGC+CGG | + | chr3.1:66724920-66724939 | None:intergenic | 40.0% | |
! | GATCTTCATCGGTTATGAAG+AGG | + | chr3.1:66724875-66724894 | None:intergenic | 40.0% |
! | TCTTCATCGGTTATGAAGAG+GGG | + | chr3.1:66724873-66724892 | None:intergenic | 40.0% |
AACTTTCCAGGCCCAAGTTT+GGG | - | chr3.1:66725188-66725207 | MS.gene70476:CDS | 45.0% | |
ATCGGTTATGAAGAGGGGTT+GGG | + | chr3.1:66724868-66724887 | None:intergenic | 45.0% | |
CCCTGCTTTAACAACTTTCC+AGG | - | chr3.1:66725176-66725195 | MS.gene70476:CDS | 45.0% | |
CCTAATTCCGGTTCCGAATT+CGG | + | chr3.1:66724468-66724487 | None:intergenic | 45.0% | |
CGGAAAACTGCAGAGAAAGA+AGG | - | chr3.1:66724436-66724455 | MS.gene70476:CDS | 45.0% | |
CTACTCTCAATGAACTCTCC+CGG | - | chr3.1:66724898-66724917 | MS.gene70476:intron | 45.0% | |
GCCTGGAAAGTTGTTAAAGC+AGG | + | chr3.1:66725180-66725199 | None:intergenic | 45.0% | |
GGAAAGTTGTTAAAGCAGGG+GGG | + | chr3.1:66725176-66725195 | None:intergenic | 45.0% | |
GGGAGAGTTCATTGAGAGTA+GGG | + | chr3.1:66724899-66724918 | None:intergenic | 45.0% | |
GTAATAGTCCAATGCAAGCC+GGG | + | chr3.1:66724919-66724938 | None:intergenic | 45.0% | |
TTCGGAACCGGAATTAGGAT+CGG | - | chr3.1:66724470-66724489 | MS.gene70476:CDS | 45.0% | |
! | CTTTCTCTGCAGTTTTCCGT+GGG | + | chr3.1:66724435-66724454 | None:intergenic | 45.0% |
! | TCTTTCTCTGCAGTTTTCCG+TGG | + | chr3.1:66724436-66724455 | None:intergenic | 45.0% |
AAGAACCCAAACCGAAACCG+CGG | - | chr3.1:66724496-66724515 | MS.gene70476:CDS | 50.0% | |
ATAACAGTGTTCCTGGCGGA+CGG | + | chr3.1:66724836-66724855 | None:intergenic | 50.0% | |
CAACTTTCCAGGCCCAAGTT+TGG | - | chr3.1:66725187-66725206 | MS.gene70476:CDS | 50.0% | |
CCACATAACAGTGTTCCTGG+CGG | + | chr3.1:66724840-66724859 | None:intergenic | 50.0% | |
CCAGGAACACTGTTATGTGG+CGG | - | chr3.1:66724840-66724859 | MS.gene70476:intron | 50.0% | |
CCGAATTCGGAACCGGAATT+AGG | - | chr3.1:66724465-66724484 | MS.gene70476:CDS | 50.0% | |
CGGGAGAGTTCATTGAGAGT+AGG | + | chr3.1:66724900-66724919 | None:intergenic | 50.0% | |
GAAGATGCCGAATTCGGAAC+CGG | - | chr3.1:66724458-66724477 | MS.gene70476:CDS | 50.0% | |
GAGAGTAGGGCGATCTTCAT+CGG | + | chr3.1:66724886-66724905 | None:intergenic | 50.0% | |
! | CATCGGTTATGAAGAGGGGT+TGG | + | chr3.1:66724869-66724888 | None:intergenic | 50.0% |
! | GAGCATTTAGAGCGTTCTCG+CGG | - | chr3.1:66724666-66724685 | MS.gene70476:intron | 50.0% |
AGAACCCAAACCGAAACCGC+GGG | - | chr3.1:66724497-66724516 | MS.gene70476:CDS | 55.0% | |
CAAACAGAACCCCGCGGTTT+CGG | + | chr3.1:66724510-66724529 | None:intergenic | 55.0% | |
CCGCCACATAACAGTGTTCC+TGG | + | chr3.1:66724843-66724862 | None:intergenic | 55.0% | |
CCGCCAGGAACACTGTTATG+TGG | - | chr3.1:66724837-66724856 | MS.gene70476:intron | 55.0% | |
GAAACCGCGGGGTTCTGTTT+GGG | - | chr3.1:66724509-66724528 | MS.gene70476:CDS | 55.0% | |
TGTTAAAGCAGGGGGGCTGT+CGG | + | chr3.1:66725169-66725188 | None:intergenic | 55.0% | |
TTCCAGGCCCAAGTTTGGGA+CGG | - | chr3.1:66725192-66725211 | MS.gene70476:CDS | 55.0% | |
! | TAACAGTGTTCCTGGCGGAC+GGG | + | chr3.1:66724835-66724854 | None:intergenic | 55.0% |
! | TGAACTCTCCCGGCTTGCAT+TGG | - | chr3.1:66724908-66724927 | MS.gene70476:intron | 55.0% |
AACCGTCCCAAACTTGGGCC+TGG | + | chr3.1:66725197-66725216 | None:intergenic | 60.0% | |
AGAACCCCGCGGTTTCGGTT+TGG | + | chr3.1:66724505-66724524 | None:intergenic | 60.0% | |
CGAAACCGCGGGGTTCTGTT+TGG | - | chr3.1:66724508-66724527 | MS.gene70476:CDS | 60.0% | |
CGCAGTCACACGAACTCCCA+CGG | - | chr3.1:66724416-66724435 | MS.gene70476:CDS | 60.0% | |
CGTGGGAGTTCGTGTGACTG+CGG | + | chr3.1:66724418-66724437 | None:intergenic | 60.0% | |
GAACCCAAACCGAAACCGCG+GGG | - | chr3.1:66724498-66724517 | MS.gene70476:CDS | 60.0% | |
GAACCCCGCGGTTTCGGTTT+GGG | + | chr3.1:66724504-66724523 | None:intergenic | 60.0% | |
GTGGGAGTTCGTGTGACTGC+GGG | + | chr3.1:66724417-66724436 | None:intergenic | 60.0% | |
TCCTCCCAAACAGAACCCCG+CGG | + | chr3.1:66724516-66724535 | None:intergenic | 60.0% | |
! | AACAGTGTTCCTGGCGGACG+GGG | + | chr3.1:66724834-66724853 | None:intergenic | 60.0% |
AAAGCAGGGGGGCTGTCGGA+AGG | + | chr3.1:66725165-66725184 | None:intergenic | 65.0% | |
AAGCAGGGGGGCTGTCGGAA+GGG | + | chr3.1:66725164-66725183 | None:intergenic | 65.0% | |
ACCGCGGGGTTCTGTTTGGG+AGG | - | chr3.1:66724512-66724531 | MS.gene70476:CDS | 65.0% | |
GCGGGGTTCTGTTTGGGAGG+AGG | - | chr3.1:66724515-66724534 | MS.gene70476:CDS | 65.0% | |
! | ACAGTGTTCCTGGCGGACGG+GGG | + | chr3.1:66724833-66724852 | None:intergenic | 65.0% |
GATGTTCTCCCCCGTCCGCC+AGG | - | chr3.1:66724822-66724841 | MS.gene70476:intron | 70.0% | |
TCGTGTGACTGCGGGCACGC+CGG | + | chr3.1:66724409-66724428 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 66724387 | 66725260 | 66724387 | ID=MS.gene70476 |
chr3.1 | mRNA | 66724387 | 66725260 | 66724387 | ID=MS.gene70476.t1;Parent=MS.gene70476 |
chr3.1 | exon | 66724952 | 66725260 | 66724952 | ID=MS.gene70476.t1.exon1;Parent=MS.gene70476.t1 |
chr3.1 | CDS | 66724952 | 66725260 | 66724952 | ID=cds.MS.gene70476.t1;Parent=MS.gene70476.t1 |
chr3.1 | exon | 66724688 | 66724831 | 66724688 | ID=MS.gene70476.t1.exon2;Parent=MS.gene70476.t1 |
chr3.1 | CDS | 66724688 | 66724831 | 66724688 | ID=cds.MS.gene70476.t1;Parent=MS.gene70476.t1 |
chr3.1 | exon | 66724387 | 66724596 | 66724387 | ID=MS.gene70476.t1.exon3;Parent=MS.gene70476.t1 |
chr3.1 | CDS | 66724387 | 66724596 | 66724387 | ID=cds.MS.gene70476.t1;Parent=MS.gene70476.t1 |
Gene Sequence |
Protein sequence |