Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044326.t1 | XP_003601497.1 | 83.9 | 224 | 31 | 3 | 1 | 220 | 1 | 223 | 7.30E-101 | 376.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044326.t1 | G7J851 | 83.9 | 224 | 31 | 3 | 1 | 220 | 1 | 223 | 5.3e-101 | 376.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044326.t1 | MTR_3g082340 | 83.929 | 224 | 31 | 3 | 1 | 220 | 1 | 223 | 2.81e-135 | 379 |
| MS.gene044326.t1 | MTR_3g082420 | 76.233 | 223 | 47 | 3 | 3 | 220 | 1 | 222 | 6.98e-121 | 342 |
| MS.gene044326.t1 | MTR_3g080680 | 43.415 | 205 | 100 | 7 | 24 | 220 | 3 | 199 | 6.49e-39 | 133 |
| MS.gene044326.t1 | MTR_3g083030 | 39.834 | 241 | 111 | 9 | 1 | 219 | 1 | 229 | 2.93e-36 | 127 |
| MS.gene044326.t1 | MTR_3g083050 | 41.546 | 207 | 99 | 6 | 1 | 203 | 1 | 189 | 4.26e-34 | 121 |
| MS.gene044326.t1 | MTR_3g083080 | 36.607 | 224 | 118 | 8 | 1 | 219 | 1 | 205 | 7.49e-31 | 112 |
| MS.gene044326.t1 | MTR_8g461300 | 38.889 | 198 | 105 | 7 | 30 | 219 | 9 | 198 | 4.10e-23 | 92.8 |
| MS.gene044326.t1 | MTR_4g055800 | 39.744 | 156 | 74 | 5 | 52 | 203 | 134 | 273 | 2.77e-21 | 89.7 |
| MS.gene044326.t1 | MTR_3g083150 | 36.283 | 226 | 122 | 11 | 1 | 219 | 1 | 211 | 4.01e-21 | 87.8 |
| MS.gene044326.t1 | MTR_3g086030 | 45.783 | 83 | 39 | 2 | 48 | 126 | 15 | 95 | 1.26e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 67 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAATTCGGAACCGGAATT+AGG | 0.215538 | 3.4:+77787948 | MS.gene044326:CDS |
| CCCTGCTTTAACAACTTTCC+AGG | 0.234656 | 3.4:+77788659 | MS.gene044326:CDS |
| CCTAATTCCGGTTCCGAATT+CGG | 0.263860 | 3.4:-77787948 | None:intergenic |
| GAACCCCGCGGTTTCGGTTT+GGG | 0.291128 | 3.4:-77787984 | None:intergenic |
| AACTTTCCAGGCCCAAGTTT+GGG | 0.324224 | 3.4:+77788671 | MS.gene044326:CDS |
| CGAAACCGCGGGGTTCTGTT+TGG | 0.344981 | 3.4:+77787991 | MS.gene044326:CDS |
| CAAACAGAACCCCGCGGTTT+CGG | 0.345423 | 3.4:-77787990 | None:intergenic |
| TGGAGTGTATTAGACTTTAA+TGG | 0.348558 | 3.4:-77788730 | None:intergenic |
| CAACTTTCCAGGCCCAAGTT+TGG | 0.351722 | 3.4:+77788670 | MS.gene044326:CDS |
| TTCGTGTTGCAGAATGTCTA+TGG | 0.360071 | 3.4:+77787857 | None:intergenic |
| GAAACCGCGGGGTTCTGTTT+GGG | 0.361275 | 3.4:+77787992 | MS.gene044326:CDS |
| TCTTGTTCCGATCCTAATTC+CGG | 0.362062 | 3.4:-77787960 | None:intergenic |
| TATCAAAACCGTCCCAAACT+TGG | 0.364944 | 3.4:-77788683 | None:intergenic |
| AGAACCCCGCGGTTTCGGTT+TGG | 0.382583 | 3.4:-77787985 | None:intergenic |
| CCGCCACATAACAGTGTTCC+TGG | 0.391171 | 3.4:-77788323 | None:intergenic |
| AAGAAGGAAGATGCCGAATT+CGG | 0.415849 | 3.4:+77787935 | MS.gene044326:CDS |
| GCGGGGTTCTGTTTGGGAGG+AGG | 0.429584 | 3.4:+77787998 | MS.gene044326:CDS |
| GAAGATGCCGAATTCGGAAC+CGG | 0.437745 | 3.4:+77787941 | MS.gene044326:CDS |
| CAGTGCAAACAATAATAATC+AGG | 0.440939 | 3.4:+77788421 | MS.gene044326:CDS |
| GCCTGGAAAGTTGTTAAAGC+AGG | 0.451734 | 3.4:-77788660 | None:intergenic |
| ATCGGTTATGAAGAGGGGTT+GGG | 0.467286 | 3.4:-77788348 | None:intergenic |
| AACCGTCCCAAACTTGGGCC+TGG | 0.470738 | 3.4:-77788677 | None:intergenic |
| TGAACTCTCCCGGCTTGCAT+TGG | 0.475836 | 3.4:+77788391 | MS.gene044326:CDS |
| TAACAGTGTTCCTGGCGGAC+GGG | 0.484854 | 3.4:-77788315 | None:intergenic |
| TTATCACAAATATATATGTA+AGG | 0.491342 | 3.4:-77788077 | None:intergenic |
| GTGGGAGTTCGTGTGACTGC+GGG | 0.493011 | 3.4:-77787897 | None:intergenic |
| ACTTGATGAAACTCAAATGT+TGG | 0.500719 | 3.4:-77788537 | None:intergenic |
| CATCGGTTATGAAGAGGGGT+TGG | 0.502034 | 3.4:-77788349 | None:intergenic |
| AACAGTGTTCCTGGCGGACG+GGG | 0.502549 | 3.4:-77788314 | None:intergenic |
| GGGAGAGTTCATTGAGAGTA+GGG | 0.505718 | 3.4:-77788379 | None:intergenic |
| ATCAAAACCGTCCCAAACTT+GGG | 0.509684 | 3.4:-77788682 | None:intergenic |
| ATAGATAATTCACTCAACTC+TGG | 0.516445 | 3.4:-77788035 | None:intergenic |
| GTAATAGTCCAATGCAAGCC+GGG | 0.518943 | 3.4:-77788399 | None:intergenic |
| AGCAGCAATACCAACATCAT+AGG | 0.521515 | 3.4:-77788571 | None:intergenic |
| CGGGAGAGTTCATTGAGAGT+AGG | 0.523682 | 3.4:-77788380 | None:intergenic |
| CGGAAAACTGCAGAGAAAGA+AGG | 0.523922 | 3.4:+77787919 | MS.gene044326:CDS |
| ATCTTCATCGGTTATGAAGA+GGG | 0.524106 | 3.4:-77788354 | None:intergenic |
| TATGATGTTGGTATTGCTGC+TGG | 0.533144 | 3.4:+77788573 | MS.gene044326:CDS |
| TGTAATAGTCCAATGCAAGC+CGG | 0.540454 | 3.4:-77788400 | None:intergenic |
| GAGAGTAGGGCGATCTTCAT+CGG | 0.549057 | 3.4:-77788366 | None:intergenic |
| ATAACAGTGTTCCTGGCGGA+CGG | 0.549223 | 3.4:-77788316 | None:intergenic |
| ATGTCTATGGAATTCAATAC+CGG | 0.569805 | 3.4:+77787870 | MS.gene044326:CDS |
| CGCAGTCACACGAACTCCCA+CGG | 0.573058 | 3.4:+77787899 | MS.gene044326:CDS |
| ACCGCGGGGTTCTGTTTGGG+AGG | 0.573859 | 3.4:+77787995 | MS.gene044326:CDS |
| TTCCAGGCCCAAGTTTGGGA+CGG | 0.574885 | 3.4:+77788675 | MS.gene044326:CDS |
| AGAACCCAAACCGAAACCGC+GGG | 0.577512 | 3.4:+77787980 | MS.gene044326:CDS |
| CCTGGAAAGTTGTTAAAGCA+GGG | 0.579311 | 3.4:-77788659 | None:intergenic |
| CTACTCTCAATGAACTCTCC+CGG | 0.588355 | 3.4:+77788381 | MS.gene044326:CDS |
| CGTGGGAGTTCGTGTGACTG+CGG | 0.590663 | 3.4:-77787898 | None:intergenic |
| TCGTGTGACTGCGGGCACGC+CGG | 0.604081 | 3.4:-77787889 | None:intergenic |
| GAGCATTTAGAGCGTTCTCG+CGG | 0.611708 | 3.4:+77788149 | MS.gene044326:CDS |
| CCGCCAGGAACACTGTTATG+TGG | 0.616088 | 3.4:+77788320 | MS.gene044326:CDS |
| TTCGGAACCGGAATTAGGAT+CGG | 0.619721 | 3.4:+77787953 | MS.gene044326:CDS |
| TGGAAAGTTGTTAAAGCAGG+GGG | 0.622860 | 3.4:-77788657 | None:intergenic |
| ACAGTGTTCCTGGCGGACGG+GGG | 0.624136 | 3.4:-77788313 | None:intergenic |
| GATCTTCATCGGTTATGAAG+AGG | 0.624382 | 3.4:-77788355 | None:intergenic |
| GTCAAGTGTACCTATGATGT+TGG | 0.629074 | 3.4:+77788561 | MS.gene044326:CDS |
| CTGGAAAGTTGTTAAAGCAG+GGG | 0.630786 | 3.4:-77788658 | None:intergenic |
| TCTTCATCGGTTATGAAGAG+GGG | 0.634517 | 3.4:-77788353 | None:intergenic |
| AAGAACCCAAACCGAAACCG+CGG | 0.646068 | 3.4:+77787979 | MS.gene044326:CDS |
| TAAACTCAGGAAGAAACTAG+AGG | 0.667176 | 3.4:+77788115 | MS.gene044326:CDS |
| TTGTGTACAAGAATAAACTC+AGG | 0.668106 | 3.4:+77788102 | MS.gene044326:CDS |
| CCAGGAACACTGTTATGTGG+CGG | 0.691865 | 3.4:+77788323 | MS.gene044326:CDS |
| GAACCCAAACCGAAACCGCG+GGG | 0.744268 | 3.4:+77787981 | MS.gene044326:CDS |
| TCCTCCCAAACAGAACCCCG+CGG | 0.747056 | 3.4:-77787996 | None:intergenic |
| GGAAAGTTGTTAAAGCAGGG+GGG | 0.752617 | 3.4:-77788656 | None:intergenic |
| CCACATAACAGTGTTCCTGG+CGG | 0.759130 | 3.4:-77788320 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTCTTCTTAATTAATTATT+AGG | + | chr3.4:77788512-77788531 | MS.gene044326:intron | 15.0% |
| !! | TTATCACAAATATATATGTA+AGG | - | chr3.4:77788080-77788099 | None:intergenic | 15.0% |
| !!! | TAATTAATTTTGATTCTTTC+TGG | + | chr3.4:77788252-77788271 | MS.gene044326:intron | 15.0% |
| ACTTGATGAAACTCAAATGT+TGG | - | chr3.4:77788540-77788559 | None:intergenic | 30.0% | |
| ATAGATAATTCACTCAACTC+TGG | - | chr3.4:77788038-77788057 | None:intergenic | 30.0% | |
| ATGTCTATGGAATTCAATAC+CGG | + | chr3.4:77787870-77787889 | MS.gene044326:CDS | 30.0% | |
| CAGTGCAAACAATAATAATC+AGG | + | chr3.4:77788421-77788440 | MS.gene044326:CDS | 30.0% | |
| TTGTGTACAAGAATAAACTC+AGG | + | chr3.4:77788102-77788121 | MS.gene044326:CDS | 30.0% | |
| TAAACTCAGGAAGAAACTAG+AGG | + | chr3.4:77788115-77788134 | MS.gene044326:CDS | 35.0% | |
| ! | ATCTTCATCGGTTATGAAGA+GGG | - | chr3.4:77788357-77788376 | None:intergenic | 35.0% |
| !! | GTCTTTTGCATTAGCTTGAA+AGG | - | chr3.4:77788616-77788635 | None:intergenic | 35.0% |
| AACACAACACAACACAACAC+AGG | + | chr3.4:77788277-77788296 | MS.gene044326:intron | 40.0% | |
| AAGAAGGAAGATGCCGAATT+CGG | + | chr3.4:77787935-77787954 | MS.gene044326:CDS | 40.0% | |
| AGCAGCAATACCAACATCAT+AGG | - | chr3.4:77788574-77788593 | None:intergenic | 40.0% | |
| ATAGACGCATACGTACACTT+AGG | - | chr3.4:77788175-77788194 | None:intergenic | 40.0% | |
| ATCAAAACCGTCCCAAACTT+GGG | - | chr3.4:77788685-77788704 | None:intergenic | 40.0% | |
| CCTGGAAAGTTGTTAAAGCA+GGG | - | chr3.4:77788662-77788681 | None:intergenic | 40.0% | |
| CTGGAAAGTTGTTAAAGCAG+GGG | - | chr3.4:77788661-77788680 | None:intergenic | 40.0% | |
| GTCAAGTGTACCTATGATGT+TGG | + | chr3.4:77788561-77788580 | MS.gene044326:CDS | 40.0% | |
| TATCAAAACCGTCCCAAACT+TGG | - | chr3.4:77788686-77788705 | None:intergenic | 40.0% | |
| TATGATGTTGGTATTGCTGC+TGG | + | chr3.4:77788573-77788592 | MS.gene044326:CDS | 40.0% | |
| TCTTGTTCCGATCCTAATTC+CGG | - | chr3.4:77787963-77787982 | None:intergenic | 40.0% | |
| TGGAAAGTTGTTAAAGCAGG+GGG | - | chr3.4:77788660-77788679 | None:intergenic | 40.0% | |
| TGTAATAGTCCAATGCAAGC+CGG | - | chr3.4:77788403-77788422 | None:intergenic | 40.0% | |
| ! | GATCTTCATCGGTTATGAAG+AGG | - | chr3.4:77788358-77788377 | None:intergenic | 40.0% |
| ! | TCTTCATCGGTTATGAAGAG+GGG | - | chr3.4:77788356-77788375 | None:intergenic | 40.0% |
| AACTTTCCAGGCCCAAGTTT+GGG | + | chr3.4:77788671-77788690 | MS.gene044326:CDS | 45.0% | |
| ATCGGTTATGAAGAGGGGTT+GGG | - | chr3.4:77788351-77788370 | None:intergenic | 45.0% | |
| CCCTGCTTTAACAACTTTCC+AGG | + | chr3.4:77788659-77788678 | MS.gene044326:CDS | 45.0% | |
| CCTAATTCCGGTTCCGAATT+CGG | - | chr3.4:77787951-77787970 | None:intergenic | 45.0% | |
| CGGAAAACTGCAGAGAAAGA+AGG | + | chr3.4:77787919-77787938 | MS.gene044326:CDS | 45.0% | |
| CTACTCTCAATGAACTCTCC+CGG | + | chr3.4:77788381-77788400 | MS.gene044326:CDS | 45.0% | |
| GCCTGGAAAGTTGTTAAAGC+AGG | - | chr3.4:77788663-77788682 | None:intergenic | 45.0% | |
| GGAAAGTTGTTAAAGCAGGG+GGG | - | chr3.4:77788659-77788678 | None:intergenic | 45.0% | |
| GGGAGAGTTCATTGAGAGTA+GGG | - | chr3.4:77788382-77788401 | None:intergenic | 45.0% | |
| GTAATAGTCCAATGCAAGCC+GGG | - | chr3.4:77788402-77788421 | None:intergenic | 45.0% | |
| TTCGGAACCGGAATTAGGAT+CGG | + | chr3.4:77787953-77787972 | MS.gene044326:CDS | 45.0% | |
| ! | CTTTCTCTGCAGTTTTCCGT+GGG | - | chr3.4:77787918-77787937 | None:intergenic | 45.0% |
| ! | TCTTTCTCTGCAGTTTTCCG+TGG | - | chr3.4:77787919-77787938 | None:intergenic | 45.0% |
| AAGAACCCAAACCGAAACCG+CGG | + | chr3.4:77787979-77787998 | MS.gene044326:CDS | 50.0% | |
| ATAACAGTGTTCCTGGCGGA+CGG | - | chr3.4:77788319-77788338 | None:intergenic | 50.0% | |
| CAACTTTCCAGGCCCAAGTT+TGG | + | chr3.4:77788670-77788689 | MS.gene044326:CDS | 50.0% | |
| CCACATAACAGTGTTCCTGG+CGG | - | chr3.4:77788323-77788342 | None:intergenic | 50.0% | |
| CCAGGAACACTGTTATGTGG+CGG | + | chr3.4:77788323-77788342 | MS.gene044326:CDS | 50.0% | |
| CCGAATTCGGAACCGGAATT+AGG | + | chr3.4:77787948-77787967 | MS.gene044326:CDS | 50.0% | |
| CGGGAGAGTTCATTGAGAGT+AGG | - | chr3.4:77788383-77788402 | None:intergenic | 50.0% | |
| GAAGATGCCGAATTCGGAAC+CGG | + | chr3.4:77787941-77787960 | MS.gene044326:CDS | 50.0% | |
| GAGAGTAGGGCGATCTTCAT+CGG | - | chr3.4:77788369-77788388 | None:intergenic | 50.0% | |
| ! | CATCGGTTATGAAGAGGGGT+TGG | - | chr3.4:77788352-77788371 | None:intergenic | 50.0% |
| ! | GAGCATTTAGAGCGTTCTCG+CGG | + | chr3.4:77788149-77788168 | MS.gene044326:CDS | 50.0% |
| AGAACCCAAACCGAAACCGC+GGG | + | chr3.4:77787980-77787999 | MS.gene044326:CDS | 55.0% | |
| CAAACAGAACCCCGCGGTTT+CGG | - | chr3.4:77787993-77788012 | None:intergenic | 55.0% | |
| CCGCCACATAACAGTGTTCC+TGG | - | chr3.4:77788326-77788345 | None:intergenic | 55.0% | |
| CCGCCAGGAACACTGTTATG+TGG | + | chr3.4:77788320-77788339 | MS.gene044326:CDS | 55.0% | |
| GAAACCGCGGGGTTCTGTTT+GGG | + | chr3.4:77787992-77788011 | MS.gene044326:CDS | 55.0% | |
| TGTTAAAGCAGGGGGGCTGT+CGG | - | chr3.4:77788652-77788671 | None:intergenic | 55.0% | |
| TTCCAGGCCCAAGTTTGGGA+CGG | + | chr3.4:77788675-77788694 | MS.gene044326:CDS | 55.0% | |
| ! | TAACAGTGTTCCTGGCGGAC+GGG | - | chr3.4:77788318-77788337 | None:intergenic | 55.0% |
| ! | TGAACTCTCCCGGCTTGCAT+TGG | + | chr3.4:77788391-77788410 | MS.gene044326:CDS | 55.0% |
| AACCGTCCCAAACTTGGGCC+TGG | - | chr3.4:77788680-77788699 | None:intergenic | 60.0% | |
| AGAACCCCGCGGTTTCGGTT+TGG | - | chr3.4:77787988-77788007 | None:intergenic | 60.0% | |
| CGAAACCGCGGGGTTCTGTT+TGG | + | chr3.4:77787991-77788010 | MS.gene044326:CDS | 60.0% | |
| CGCAGTCACACGAACTCCCA+CGG | + | chr3.4:77787899-77787918 | MS.gene044326:CDS | 60.0% | |
| CGTGGGAGTTCGTGTGACTG+CGG | - | chr3.4:77787901-77787920 | None:intergenic | 60.0% | |
| GAACCCAAACCGAAACCGCG+GGG | + | chr3.4:77787981-77788000 | MS.gene044326:CDS | 60.0% | |
| GAACCCCGCGGTTTCGGTTT+GGG | - | chr3.4:77787987-77788006 | None:intergenic | 60.0% | |
| GTGGGAGTTCGTGTGACTGC+GGG | - | chr3.4:77787900-77787919 | None:intergenic | 60.0% | |
| TCCTCCCAAACAGAACCCCG+CGG | - | chr3.4:77787999-77788018 | None:intergenic | 60.0% | |
| ! | AACAGTGTTCCTGGCGGACG+GGG | - | chr3.4:77788317-77788336 | None:intergenic | 60.0% |
| AAAGCAGGGGGGCTGTCGGA+AGG | - | chr3.4:77788648-77788667 | None:intergenic | 65.0% | |
| AAGCAGGGGGGCTGTCGGAA+GGG | - | chr3.4:77788647-77788666 | None:intergenic | 65.0% | |
| ACCGCGGGGTTCTGTTTGGG+AGG | + | chr3.4:77787995-77788014 | MS.gene044326:CDS | 65.0% | |
| GCGGGGTTCTGTTTGGGAGG+AGG | + | chr3.4:77787998-77788017 | MS.gene044326:CDS | 65.0% | |
| ! | ACAGTGTTCCTGGCGGACGG+GGG | - | chr3.4:77788316-77788335 | None:intergenic | 65.0% |
| GATGTTCTCCCCCGTCCGCC+AGG | + | chr3.4:77788305-77788324 | MS.gene044326:CDS | 70.0% | |
| TCGTGTGACTGCGGGCACGC+CGG | - | chr3.4:77787892-77787911 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 77787870 | 77788743 | 77787870 | ID=MS.gene044326 |
| chr3.4 | mRNA | 77787870 | 77788743 | 77787870 | ID=MS.gene044326.t1;Parent=MS.gene044326 |
| chr3.4 | exon | 77787870 | 77788178 | 77787870 | ID=MS.gene044326.t1.exon1;Parent=MS.gene044326.t1 |
| chr3.4 | CDS | 77787870 | 77788178 | 77787870 | ID=cds.MS.gene044326.t1;Parent=MS.gene044326.t1 |
| chr3.4 | exon | 77788299 | 77788442 | 77788299 | ID=MS.gene044326.t1.exon2;Parent=MS.gene044326.t1 |
| chr3.4 | CDS | 77788299 | 77788442 | 77788299 | ID=cds.MS.gene044326.t1;Parent=MS.gene044326.t1 |
| chr3.4 | exon | 77788534 | 77788743 | 77788534 | ID=MS.gene044326.t1.exon3;Parent=MS.gene044326.t1 |
| chr3.4 | CDS | 77788534 | 77788743 | 77788534 | ID=cds.MS.gene044326.t1;Parent=MS.gene044326.t1 |
| Gene Sequence |
| Protein sequence |