Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25704.t1 | AES71755.1 | 73 | 222 | 60 | 0 | 3 | 224 | 1 | 222 | 1.60E-71 | 279.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25704.t1 | G7J8S4 | 73.0 | 222 | 60 | 0 | 3 | 224 | 1 | 222 | 1.2e-71 | 279.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25704.t1 | MTR_3g082420 | 79.736 | 227 | 36 | 4 | 3 | 224 | 1 | 222 | 3.98e-123 | 348 |
MS.gene25704.t1 | MTR_3g082340 | 69.264 | 231 | 56 | 4 | 1 | 224 | 1 | 223 | 3.49e-104 | 300 |
MS.gene25704.t1 | MTR_3g080680 | 46.305 | 203 | 96 | 5 | 30 | 224 | 2 | 199 | 2.40e-45 | 150 |
MS.gene25704.t1 | MTR_3g083030 | 42.105 | 228 | 104 | 11 | 9 | 223 | 17 | 229 | 1.74e-35 | 125 |
MS.gene25704.t1 | MTR_3g083050 | 39.565 | 230 | 108 | 10 | 1 | 223 | 1 | 206 | 1.19e-31 | 115 |
MS.gene25704.t1 | MTR_3g083080 | 38.462 | 169 | 91 | 5 | 59 | 223 | 46 | 205 | 1.48e-25 | 99.4 |
MS.gene25704.t1 | MTR_8g461300 | 38.278 | 209 | 105 | 8 | 24 | 223 | 5 | 198 | 6.58e-24 | 94.7 |
MS.gene25704.t1 | MTR_4g055800 | 38.889 | 144 | 71 | 4 | 68 | 207 | 143 | 273 | 3.38e-19 | 84.3 |
MS.gene25704.t1 | MTR_3g083150 | 34.783 | 230 | 124 | 10 | 1 | 223 | 1 | 211 | 1.12e-17 | 78.6 |
MS.gene25704.t1 | MTR_3g086030 | 39.091 | 110 | 62 | 2 | 40 | 145 | 1 | 109 | 8.31e-13 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 69 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGAAATCGGAACCGGAATT+AGG | 0.217000 | 3.3:+69272125 | MS.gene25704:CDS |
CGCGGTTTGGGTTTGGATTC+GGG | 0.220683 | 3.3:-69272161 | None:intergenic |
CTCCTCCCGCGGTTTGGGTT+TGG | 0.249105 | 3.3:-69272168 | None:intergenic |
CCGCGGTTTGGGTTTGGATT+CGG | 0.250476 | 3.3:-69272162 | None:intergenic |
CCTAATTCCGGTTCCGATTT+CGG | 0.259504 | 3.3:-69272125 | None:intergenic |
GACACCTCCTCCCGCGGTTT+GGG | 0.274746 | 3.3:-69272173 | None:intergenic |
TTCCGATTCCTTTCCCGGTT+CGG | 0.295282 | 3.3:-69272087 | None:intergenic |
TCCTTTCCCGGTTCGGAATT+CGG | 0.295778 | 3.3:-69272080 | None:intergenic |
CAACTTTCCAGGCTCAAGTA+TGG | 0.302357 | 3.3:+69272827 | MS.gene25704:CDS |
GGACACCTCCTCCCGCGGTT+TGG | 0.311576 | 3.3:-69272174 | None:intergenic |
TCCTGTTCCGATCCTAATTC+CGG | 0.325855 | 3.3:-69272137 | None:intergenic |
CCCTGCTTTAACAACTTTCC+AGG | 0.345313 | 3.3:+69272816 | MS.gene25704:CDS |
GGAACCGAAACGGCCGAAAT+CGG | 0.376767 | 3.3:+69272112 | MS.gene25704:CDS |
CCGCCACATAACAGTGTTCT+TGG | 0.391644 | 3.3:-69272474 | None:intergenic |
GGTTCCGATTTCGGCCGTTT+CGG | 0.408652 | 3.3:-69272116 | None:intergenic |
TTCCGAACCGGGAAAGGAAT+CGG | 0.417366 | 3.3:+69272085 | MS.gene25704:CDS |
TCGATACTCACACGGAAAGC+TGG | 0.427552 | 3.3:+69272039 | MS.gene25704:CDS |
TGAACTCTCCCTGCTTGCAT+TGG | 0.445183 | 3.3:+69272542 | MS.gene25704:CDS |
ATAGAAAAGTCACTCAACTT+TGG | 0.446397 | 3.3:-69272206 | None:intergenic |
GCCTGGAAAGTTGTTAAAGC+AGG | 0.451262 | 3.3:-69272817 | None:intergenic |
GAAGCGGCCGAATTCCGAAC+CGG | 0.466533 | 3.3:+69272073 | MS.gene25704:CDS |
ATCGGTTATGAAGAGGGGTT+GGG | 0.467286 | 3.3:-69272499 | None:intergenic |
GCCGAATTCCGAACCGGGAA+AGG | 0.476664 | 3.3:+69272079 | MS.gene25704:CDS |
ACCGGGAAAGGAATCGGAAA+AGG | 0.477636 | 3.3:+69272091 | MS.gene25704:CDS |
TTTGTGTTGCAGAATGTCAA+TGG | 0.481116 | 3.3:+69272013 | None:intergenic |
ACCGGAATTAGGATCGGAAC+AGG | 0.482569 | 3.3:+69272136 | MS.gene25704:CDS |
TGTAATATTCCAATGCAAGC+AGG | 0.487476 | 3.3:-69272551 | None:intergenic |
GAAACGGCCGAAATCGGAAC+CGG | 0.494140 | 3.3:+69272118 | MS.gene25704:CDS |
CACCGTCCCATACTTGAGCC+TGG | 0.497315 | 3.3:-69272834 | None:intergenic |
TAACAGTGTTCTTGGCGGAC+GGG | 0.498416 | 3.3:-69272466 | None:intergenic |
AAGCGGCCGAATTCCGAACC+GGG | 0.499700 | 3.3:+69272074 | MS.gene25704:CDS |
ACTTGATGAAACTCAAATGT+TGG | 0.500719 | 3.3:-69272697 | None:intergenic |
CATCGGTTATGAAGAGGGGT+TGG | 0.502034 | 3.3:-69272500 | None:intergenic |
TTATCACACATATATATGTA+AGG | 0.511583 | 3.3:-69272248 | None:intergenic |
AACAGTGTTCTTGGCGGACG+GGG | 0.511969 | 3.3:-69272465 | None:intergenic |
ATCAGCAATACCAACATCAT+AGG | 0.513179 | 3.3:-69272731 | None:intergenic |
ATCTTCATCGGTTATGAAGA+GGG | 0.524106 | 3.3:-69272505 | None:intergenic |
AACTTTCCAGGCTCAAGTAT+GGG | 0.533504 | 3.3:+69272828 | MS.gene25704:CDS |
CGAATCCAAACCCAAACCGC+GGG | 0.537433 | 3.3:+69272163 | MS.gene25704:CDS |
CGATACTCACACGGAAAGCT+GGG | 0.542297 | 3.3:+69272040 | MS.gene25704:CDS |
CAGGGAGAGTTCATCAAGAG+TGG | 0.544597 | 3.3:-69272532 | None:intergenic |
AGGGAGAGTTCATCAAGAGT+GGG | 0.550261 | 3.3:-69272531 | None:intergenic |
CAAACCCAAACCGCGGGAGG+AGG | 0.554321 | 3.3:+69272169 | MS.gene25704:CDS |
ACTCAACTTTGGATCTTCAT+CGG | 0.555138 | 3.3:-69272195 | None:intergenic |
AAGAGTGGGGCGATCTTCAT+CGG | 0.559401 | 3.3:-69272517 | None:intergenic |
ATAACAGTGTTCTTGGCGGA+CGG | 0.562366 | 3.3:-69272467 | None:intergenic |
ATCCAAACCCAAACCGCGGG+AGG | 0.562389 | 3.3:+69272166 | MS.gene25704:CDS |
TATGATGTTGGTATTGCTGA+TGG | 0.567223 | 3.3:+69272733 | MS.gene25704:CDS |
CTTGCATTGGAATATTACAA+TGG | 0.578867 | 3.3:+69272555 | MS.gene25704:CDS |
AATCGGAAAAGGAACCGAAA+CGG | 0.587324 | 3.3:+69272102 | MS.gene25704:CDS |
TCATCGGACACCTCCTCCCG+CGG | 0.588030 | 3.3:-69272179 | None:intergenic |
GTAATATTCCAATGCAAGCA+GGG | 0.591856 | 3.3:-69272550 | None:intergenic |
CCACATAACAGTGTTCTTGG+CGG | 0.600956 | 3.3:-69272471 | None:intergenic |
CCTGGAAAGTTGTTAAAGCA+GGG | 0.605506 | 3.3:-69272816 | None:intergenic |
ATCGGAACCGGAATTAGGAT+CGG | 0.612901 | 3.3:+69272130 | MS.gene25704:CDS |
AGTTGTTAAAGCAGGGCTGT+CGG | 0.619352 | 3.3:-69272809 | None:intergenic |
CCGCCAAGAACACTGTTATG+TGG | 0.619826 | 3.3:+69272471 | MS.gene25704:CDS |
GATCTTCATCGGTTATGAAG+AGG | 0.624382 | 3.3:-69272506 | None:intergenic |
GTCAAGTGTACCTATGATGT+TGG | 0.629074 | 3.3:+69272721 | MS.gene25704:CDS |
TCTTCATCGGTTATGAAGAG+GGG | 0.634517 | 3.3:-69272504 | None:intergenic |
TTCCAGGCTCAAGTATGGGA+CGG | 0.638739 | 3.3:+69272832 | MS.gene25704:CDS |
ACAGTGTTCTTGGCGGACGG+GGG | 0.652393 | 3.3:-69272464 | None:intergenic |
CCGAATCCAAACCCAAACCG+CGG | 0.656141 | 3.3:+69272162 | MS.gene25704:CDS |
TAAACTCATGAAGAAACTAG+AGG | 0.657097 | 3.3:+69272286 | MS.gene25704:CDS |
GGGAGAGTTCATCAAGAGTG+GGG | 0.657488 | 3.3:-69272530 | None:intergenic |
GCTGGGAAGAAAGTTTGAAG+CGG | 0.688820 | 3.3:+69272057 | MS.gene25704:CDS |
CCAAGAACACTGTTATGTGG+CGG | 0.693885 | 3.3:+69272474 | MS.gene25704:CDS |
AATGGAATTCGATACTCACA+CGG | 0.710555 | 3.3:+69272031 | MS.gene25704:CDS |
GAGCATCTAGAGCGTTCTCG+CGG | 0.715724 | 3.3:+69272320 | MS.gene25704:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTTCTTCTTAATTAATTATT+AGG | + | chr3.3:69272672-69272691 | MS.gene25704:intron | 15.0% |
!! | CAATGGAAAAAATAATAATC+AGG | + | chr3.3:69272572-69272591 | MS.gene25704:CDS | 20.0% |
!! | TTATCACACATATATATGTA+AGG | - | chr3.3:69272251-69272270 | None:intergenic | 20.0% |
!!! | TAATTAATTTTGATTCATCC+TGG | + | chr3.3:69272413-69272432 | MS.gene25704:intron | 20.0% |
ACTTGATGAAACTCAAATGT+TGG | - | chr3.3:69272700-69272719 | None:intergenic | 30.0% | |
ATAGAAAAGTCACTCAACTT+TGG | - | chr3.3:69272209-69272228 | None:intergenic | 30.0% | |
CTTGCATTGGAATATTACAA+TGG | + | chr3.3:69272555-69272574 | MS.gene25704:CDS | 30.0% | |
TAAACTCATGAAGAAACTAG+AGG | + | chr3.3:69272286-69272305 | MS.gene25704:CDS | 30.0% | |
!! | GAAGTGTCTTCTTTTGATAT+TGG | - | chr3.3:69272790-69272809 | None:intergenic | 30.0% |
!!! | TGATATTGGTTTTGCTTGAA+AGG | - | chr3.3:69272776-69272795 | None:intergenic | 30.0% |
AATGGAATTCGATACTCACA+CGG | + | chr3.3:69272031-69272050 | MS.gene25704:CDS | 35.0% | |
ACTCAACTTTGGATCTTCAT+CGG | - | chr3.3:69272198-69272217 | None:intergenic | 35.0% | |
ATCAGCAATACCAACATCAT+AGG | - | chr3.3:69272734-69272753 | None:intergenic | 35.0% | |
GTAATATTCCAATGCAAGCA+GGG | - | chr3.3:69272553-69272572 | None:intergenic | 35.0% | |
TATGATGTTGGTATTGCTGA+TGG | + | chr3.3:69272733-69272752 | MS.gene25704:CDS | 35.0% | |
TGTAATATTCCAATGCAAGC+AGG | - | chr3.3:69272554-69272573 | None:intergenic | 35.0% | |
! | ATCTTCATCGGTTATGAAGA+GGG | - | chr3.3:69272508-69272527 | None:intergenic | 35.0% |
AACTTTCCAGGCTCAAGTAT+GGG | + | chr3.3:69272828-69272847 | MS.gene25704:CDS | 40.0% | |
AATCGGAAAAGGAACCGAAA+CGG | + | chr3.3:69272102-69272121 | MS.gene25704:CDS | 40.0% | |
CCTGGAAAGTTGTTAAAGCA+GGG | - | chr3.3:69272819-69272838 | None:intergenic | 40.0% | |
GTCAAGTGTACCTATGATGT+TGG | + | chr3.3:69272721-69272740 | MS.gene25704:CDS | 40.0% | |
! | GATCTTCATCGGTTATGAAG+AGG | - | chr3.3:69272509-69272528 | None:intergenic | 40.0% |
! | TCTTCATCGGTTATGAAGAG+GGG | - | chr3.3:69272507-69272526 | None:intergenic | 40.0% |
ACACCTGTATTGTGTTGTCC+AGG | - | chr3.3:69272434-69272453 | None:intergenic | 45.0% | |
AGGGAGAGTTCATCAAGAGT+GGG | - | chr3.3:69272534-69272553 | None:intergenic | 45.0% | |
AGTTGTTAAAGCAGGGCTGT+CGG | - | chr3.3:69272812-69272831 | None:intergenic | 45.0% | |
ATAACAGTGTTCTTGGCGGA+CGG | - | chr3.3:69272470-69272489 | None:intergenic | 45.0% | |
ATAGACGCGTACGTACACTT+AGG | - | chr3.3:69272346-69272365 | None:intergenic | 45.0% | |
ATCGGAACCGGAATTAGGAT+CGG | + | chr3.3:69272130-69272149 | MS.gene25704:CDS | 45.0% | |
ATCGGTTATGAAGAGGGGTT+GGG | - | chr3.3:69272502-69272521 | None:intergenic | 45.0% | |
CAACTTTCCAGGCTCAAGTA+TGG | + | chr3.3:69272827-69272846 | MS.gene25704:CDS | 45.0% | |
CATCCTGGACAACACAATAC+AGG | + | chr3.3:69272428-69272447 | MS.gene25704:intron | 45.0% | |
CCAAGAACACTGTTATGTGG+CGG | + | chr3.3:69272474-69272493 | MS.gene25704:CDS | 45.0% | |
CCACATAACAGTGTTCTTGG+CGG | - | chr3.3:69272474-69272493 | None:intergenic | 45.0% | |
CCCTGCTTTAACAACTTTCC+AGG | + | chr3.3:69272816-69272835 | MS.gene25704:CDS | 45.0% | |
CCTAATTCCGGTTCCGATTT+CGG | - | chr3.3:69272128-69272147 | None:intergenic | 45.0% | |
GCCTGGAAAGTTGTTAAAGC+AGG | - | chr3.3:69272820-69272839 | None:intergenic | 45.0% | |
GCTGGGAAGAAAGTTTGAAG+CGG | + | chr3.3:69272057-69272076 | MS.gene25704:CDS | 45.0% | |
TCCTGTTCCGATCCTAATTC+CGG | - | chr3.3:69272140-69272159 | None:intergenic | 45.0% | |
! | TCCTTTTCCGATTCCTTTCC+CGG | - | chr3.3:69272095-69272114 | None:intergenic | 45.0% |
AAGAGTGGGGCGATCTTCAT+CGG | - | chr3.3:69272520-69272539 | None:intergenic | 50.0% | |
ACCGGAATTAGGATCGGAAC+AGG | + | chr3.3:69272136-69272155 | MS.gene25704:CDS | 50.0% | |
ACCGGGAAAGGAATCGGAAA+AGG | + | chr3.3:69272091-69272110 | MS.gene25704:CDS | 50.0% | |
CAGGGAGAGTTCATCAAGAG+TGG | - | chr3.3:69272535-69272554 | None:intergenic | 50.0% | |
CCGAAATCGGAACCGGAATT+AGG | + | chr3.3:69272125-69272144 | MS.gene25704:CDS | 50.0% | |
CCGCCAAGAACACTGTTATG+TGG | + | chr3.3:69272471-69272490 | MS.gene25704:CDS | 50.0% | |
CCGCCACATAACAGTGTTCT+TGG | - | chr3.3:69272477-69272496 | None:intergenic | 50.0% | |
CGATACTCACACGGAAAGCT+GGG | + | chr3.3:69272040-69272059 | MS.gene25704:CDS | 50.0% | |
GGGAGAGTTCATCAAGAGTG+GGG | - | chr3.3:69272533-69272552 | None:intergenic | 50.0% | |
TCGATACTCACACGGAAAGC+TGG | + | chr3.3:69272039-69272058 | MS.gene25704:CDS | 50.0% | |
TGAACTCTCCCTGCTTGCAT+TGG | + | chr3.3:69272542-69272561 | MS.gene25704:CDS | 50.0% | |
TTCCAGGCTCAAGTATGGGA+CGG | + | chr3.3:69272832-69272851 | MS.gene25704:CDS | 50.0% | |
TTCCGAACCGGGAAAGGAAT+CGG | + | chr3.3:69272085-69272104 | MS.gene25704:CDS | 50.0% | |
TTCCGATTCCTTTCCCGGTT+CGG | - | chr3.3:69272090-69272109 | None:intergenic | 50.0% | |
! | CATCGGTTATGAAGAGGGGT+TGG | - | chr3.3:69272503-69272522 | None:intergenic | 50.0% |
! | TAACAGTGTTCTTGGCGGAC+GGG | - | chr3.3:69272469-69272488 | None:intergenic | 50.0% |
!! | TCCTTTCCCGGTTCGGAATT+CGG | - | chr3.3:69272083-69272102 | None:intergenic | 50.0% |
CCGAATCCAAACCCAAACCG+CGG | + | chr3.3:69272162-69272181 | MS.gene25704:CDS | 55.0% | |
CGAATCCAAACCCAAACCGC+GGG | + | chr3.3:69272163-69272182 | MS.gene25704:CDS | 55.0% | |
GAAACGGCCGAAATCGGAAC+CGG | + | chr3.3:69272118-69272137 | MS.gene25704:CDS | 55.0% | |
GGAACCGAAACGGCCGAAAT+CGG | + | chr3.3:69272112-69272131 | MS.gene25704:CDS | 55.0% | |
GGTTCCGATTTCGGCCGTTT+CGG | - | chr3.3:69272119-69272138 | None:intergenic | 55.0% | |
! | AACAGTGTTCTTGGCGGACG+GGG | - | chr3.3:69272468-69272487 | None:intergenic | 55.0% |
! | CCGCGGTTTGGGTTTGGATT+CGG | - | chr3.3:69272165-69272184 | None:intergenic | 55.0% |
! | CGCGGTTTGGGTTTGGATTC+GGG | - | chr3.3:69272164-69272183 | None:intergenic | 55.0% |
! | GAGCATCTAGAGCGTTCTCG+CGG | + | chr3.3:69272320-69272339 | MS.gene25704:CDS | 55.0% |
AAGCGGCCGAATTCCGAACC+GGG | + | chr3.3:69272074-69272093 | MS.gene25704:CDS | 60.0% | |
ATCCAAACCCAAACCGCGGG+AGG | + | chr3.3:69272166-69272185 | MS.gene25704:CDS | 60.0% | |
CACCGTCCCATACTTGAGCC+TGG | - | chr3.3:69272837-69272856 | None:intergenic | 60.0% | |
GAAGCGGCCGAATTCCGAAC+CGG | + | chr3.3:69272073-69272092 | MS.gene25704:CDS | 60.0% | |
GCCGAATTCCGAACCGGGAA+AGG | + | chr3.3:69272079-69272098 | MS.gene25704:CDS | 60.0% | |
! | ACAGTGTTCTTGGCGGACGG+GGG | - | chr3.3:69272467-69272486 | None:intergenic | 60.0% |
CAAACCCAAACCGCGGGAGG+AGG | + | chr3.3:69272169-69272188 | MS.gene25704:CDS | 65.0% | |
GACACCTCCTCCCGCGGTTT+GGG | - | chr3.3:69272176-69272195 | None:intergenic | 65.0% | |
TCATCGGACACCTCCTCCCG+CGG | - | chr3.3:69272182-69272201 | None:intergenic | 65.0% | |
! | CTCCTCCCGCGGTTTGGGTT+TGG | - | chr3.3:69272171-69272190 | None:intergenic | 65.0% |
GGACACCTCCTCCCGCGGTT+TGG | - | chr3.3:69272177-69272196 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 69272026 | 69272900 | 69272026 | ID=MS.gene25704 |
chr3.3 | mRNA | 69272026 | 69272900 | 69272026 | ID=MS.gene25704.t1;Parent=MS.gene25704 |
chr3.3 | exon | 69272026 | 69272349 | 69272026 | ID=MS.gene25704.t1.exon1;Parent=MS.gene25704.t1 |
chr3.3 | CDS | 69272026 | 69272349 | 69272026 | ID=cds.MS.gene25704.t1;Parent=MS.gene25704.t1 |
chr3.3 | exon | 69272450 | 69272593 | 69272450 | ID=MS.gene25704.t1.exon2;Parent=MS.gene25704.t1 |
chr3.3 | CDS | 69272450 | 69272593 | 69272450 | ID=cds.MS.gene25704.t1;Parent=MS.gene25704.t1 |
chr3.3 | exon | 69272694 | 69272900 | 69272694 | ID=MS.gene25704.t1.exon3;Parent=MS.gene25704.t1 |
chr3.3 | CDS | 69272694 | 69272900 | 69272694 | ID=cds.MS.gene25704.t1;Parent=MS.gene25704.t1 |
Gene Sequence |
Protein sequence |