AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77472

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77472.t1 MTR_3g083150 92.661 218 9 3 1 217 1 212 5.57e-131 367
MS.gene77472.t1 MTR_3g083030 37.657 239 118 9 1 217 1 230 3.14e-34 122
MS.gene77472.t1 MTR_3g083080 40.090 222 110 9 1 216 1 205 2.64e-33 119
MS.gene77472.t1 MTR_3g083050 38.393 224 114 8 1 217 1 207 3.23e-32 116
MS.gene77472.t1 MTR_3g082340 37.991 229 122 9 1 216 1 222 3.78e-31 114
MS.gene77472.t1 MTR_3g083100 48.485 132 55 4 98 217 44 174 4.07e-25 97.1
MS.gene77472.t1 MTR_3g082420 38.164 207 110 10 21 216 22 221 6.88e-25 97.8
MS.gene77472.t1 MTR_3g080680 34.135 208 114 9 21 216 2 198 1.99e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 65 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCTTTAGCAAATAAATT+TGG 0.179740 3.2:+72011115 MS.gene77472:CDS
GGGTTTGAAGTACGAGTTTA+AGG 0.181770 3.2:+72011317 MS.gene77472:intron
TCCGAATCCGATTCTGGTTC+TGG 0.264411 3.2:-72009473 None:intergenic
CAAATAAATTTGGCCATAAC+TGG 0.265315 3.2:+72011125 MS.gene77472:CDS
TCAGATTCCGAATCCGATTC+TGG 0.272868 3.2:-72009479 None:intergenic
GGATGAACATCTTCTGGTTT+TGG 0.280325 3.2:-72011405 None:intergenic
TTGGAAGGATGAACATCTTC+TGG 0.298673 3.2:-72011411 None:intergenic
CACGTCTGCCACCACTTTCC+AGG 0.317289 3.2:+72011434 MS.gene77472:CDS
CGAAACCAATTGAATATCTT+CGG 0.337763 3.2:+72009537 MS.gene77472:CDS
GCCATTAGTCATATTCCTTT+AGG 0.349715 3.2:+72011354 MS.gene77472:CDS
CGGCGTCACCCCACCTCCTC+TGG 0.352863 3.2:+72009412 MS.gene77472:CDS
ATCGTCTATAGGAACGGGTC+TGG 0.358535 3.2:-72011149 None:intergenic
TCGACTCTCCAAGTGTGCTT+TGG 0.365473 3.2:+72011192 MS.gene77472:CDS
CGGAACCGGAACCAATTGAT+TGG 0.370659 3.2:+72009504 MS.gene77472:CDS
TTATTTGCTAAAGGTGGAAT+GGG 0.398045 3.2:-72011109 None:intergenic
GGAAAAGTACAAGGACAATC+AGG 0.402358 3.2:+72011213 MS.gene77472:CDS
CAGTCCCAATCAATTGGTTC+CGG 0.406500 3.2:-72009509 None:intergenic
TTGCAGAATGTCGATGGAAT+TGG 0.433101 3.2:+72009376 None:intergenic
TGGCCAAATTTATTTGCTAA+AGG 0.435844 3.2:-72011118 None:intergenic
TCGCAGCTTTCCAGAGGAGG+TGG 0.437827 3.2:-72009422 None:intergenic
TTTATTTGCTAAAGGTGGAA+TGG 0.443630 3.2:-72011110 None:intergenic
GATACCCAGTCCCAATCAAT+TGG 0.444473 3.2:-72009515 None:intergenic
CACGACTTGATCACAGGTTC+AGG 0.445281 3.2:-72011477 None:intergenic
GAACGGGTCTGGGCCAGTTA+TGG 0.459899 3.2:-72011138 None:intergenic
TTCGGAATCTGATTCGGAAC+CGG 0.461844 3.2:+72009490 MS.gene77472:CDS
CGGAACCAATTGATTGGGAC+TGG 0.463007 3.2:+72009510 MS.gene77472:CDS
ACAAGAAGAGGCTGAAGAAA+AGG 0.467705 3.2:+72009637 MS.gene77472:CDS
TACAGTCACAGACGTGGGCC+TGG 0.467782 3.2:-72011452 None:intergenic
TTATCCCGAAGATATTCAAT+TGG 0.470527 3.2:-72009542 None:intergenic
CCAAATTTATTTGCTAAAGG+TGG 0.470541 3.2:-72011115 None:intergenic
GAAACCAATTGAATATCTTC+GGG 0.474555 3.2:+72009538 MS.gene77472:CDS
GGCTGCTCGTGATCGTCTAT+AGG 0.478479 3.2:-72011160 None:intergenic
AACGGAACCAGAACCAGAAT+CGG 0.480456 3.2:+72009466 MS.gene77472:CDS
ACCAGAACCAGAATCGGATT+CGG 0.482522 3.2:+72009472 MS.gene77472:CDS
ATCGGATTCGGAATCTGATT+CGG 0.486643 3.2:+72009484 MS.gene77472:CDS
GGAACCGGAACCAATTGATT+GGG 0.488378 3.2:+72009505 MS.gene77472:CDS
TCGTGATCGTCTATAGGAAC+GGG 0.489382 3.2:-72011154 None:intergenic
TCCTCGCAGCTTTCCAGAGG+AGG 0.494982 3.2:-72009425 None:intergenic
CGCAGCTTTCCAGAGGAGGT+GGG 0.508578 3.2:-72009421 None:intergenic
GCCTAAAGGAATATGACTAA+TGG 0.514370 3.2:-72011355 None:intergenic
TCGTCTATAGGAACGGGTCT+GGG 0.522661 3.2:-72011148 None:intergenic
TGGAATGGGGATAGCATCGA+AGG 0.526867 3.2:-72011095 None:intergenic
CTCGTGATCGTCTATAGGAA+CGG 0.534266 3.2:-72011155 None:intergenic
CGAGTTTAAGGAGCTTGTCA+AGG 0.553566 3.2:+72011329 MS.gene77472:CDS
ATGGAACACGACTTGATCAC+AGG 0.555050 3.2:-72011483 None:intergenic
AGGCCCACGTCTGTGACTGT+AGG 0.557398 3.2:+72011454 MS.gene77472:CDS
GTAATGTAGTAGCTGCCTAA+AGG 0.562791 3.2:-72011369 None:intergenic
ACAGACGTGGGCCTGGAAAG+TGG 0.562887 3.2:-72011445 None:intergenic
GCAGCTTTCCAGAGGAGGTG+GGG 0.563645 3.2:-72009420 None:intergenic
CAAGTGTTGCAGAATGTCGA+TGG 0.567440 3.2:+72009370 None:intergenic
AGTCGTGAGAGAACAAGAAG+AGG 0.579539 3.2:+72009625 MS.gene77472:CDS
GAAAGTGGTGGCAGACGTGT+TGG 0.592289 3.2:-72011430 None:intergenic
GTGTGCTTTGGAAAAGTACA+AGG 0.603036 3.2:+72011204 MS.gene77472:CDS
TATTTGCTAAAGGTGGAATG+GGG 0.610664 3.2:-72011108 None:intergenic
CAGGCCTACAGTCACAGACG+TGG 0.613415 3.2:-72011458 None:intergenic
TTGGAGAGTCGAATGAGAAG+AGG 0.634132 3.2:-72011181 None:intergenic
GGAACCAATTGATTGGGACT+GGG 0.640773 3.2:+72009511 MS.gene77472:CDS
GAATTGGATACAGTGTTGCA+CGG 0.652051 3.2:+72009392 MS.gene77472:CDS
GTGGTGGCAGACGTGTTGGA+AGG 0.662563 3.2:-72011426 None:intergenic
ACCTCCTCTGGAAAGCTGCG+AGG 0.671307 3.2:+72009424 MS.gene77472:CDS
GGAATGGGGATAGCATCGAA+GGG 0.673048 3.2:-72011094 None:intergenic
GACGTGGGCCTGGAAAGTGG+TGG 0.712156 3.2:-72011442 None:intergenic
GGTCTTCAAATACTCAGCGA+CGG 0.718541 3.2:-72009660 None:intergenic
ACGTACACTTATGTTACGAG+CGG 0.729892 3.2:-72009681 None:intergenic
AGGCCTACAGTCACAGACGT+GGG 0.738100 3.2:-72011457 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGTAACATAAATAAAT+TGG - chr3.2:72010258-72010277 None:intergenic 10.0%
!! TAATTCAAAAATAAAAACTA+AGG - chr3.2:72010696-72010715 None:intergenic 10.0%
!!! AAAATTTATTTGTTCTAAAA+AGG - chr3.2:72010089-72010108 None:intergenic 10.0%
!!! AAATTTATTTGTTCTAAAAA+GGG - chr3.2:72010088-72010107 None:intergenic 10.0%
!!! ATAATATTGTTTTTAATACA+AGG + chr3.2:72010827-72010846 MS.gene77472:intron 10.0%
!!! ATTCTATTTTGTTTTATTTA+GGG + chr3.2:72011297-72011316 MS.gene77472:intron 10.0%
!!! ATTTGAGATAAATTTTTTTT+AGG + chr3.2:72010587-72010606 MS.gene77472:intron 10.0%
!!! TAATATTGTTTTTAATACAA+GGG + chr3.2:72010828-72010847 MS.gene77472:intron 10.0%
!!! TATTCTATTTTGTTTTATTT+AGG + chr3.2:72011296-72011315 MS.gene77472:intron 10.0%
!! AAATAATTAATGTACATTGA+GGG - chr3.2:72010214-72010233 None:intergenic 15.0%
!! TTGTTTGATTGAAATTTAAT+GGG - chr3.2:72009781-72009800 None:intergenic 15.0%
!!! ATTAATATTGATGATTTTGA+TGG + chr3.2:72010439-72010458 MS.gene77472:intron 15.0%
!!! TAATTAGTTAATGTTTTCAT+AGG - chr3.2:72010283-72010302 None:intergenic 15.0%
!!! TTTTGAATTGAAAAAACAAA+TGG - chr3.2:72009996-72010015 None:intergenic 15.0%
!!! TTTTTATTTTTGAATTACCA+CGG + chr3.2:72010699-72010718 MS.gene77472:intron 15.0%
!! AAAAAATTTGAAGGATTGAA+TGG - chr3.2:72009844-72009863 None:intergenic 20.0%
!! AACATAAATAAATTGGATCA+GGG - chr3.2:72010251-72010270 None:intergenic 20.0%
!! AACTCAAAAGATCTTATAAA+TGG - chr3.2:72010151-72010170 None:intergenic 20.0%
!! ACTCAAAAGATCTTATAAAT+GGG - chr3.2:72010150-72010169 None:intergenic 20.0%
!! ATTAAGACATAAACAGATAT+TGG - chr3.2:72011262-72011281 None:intergenic 20.0%
!! ATTTATGATATTTGATGGAA+TGG + chr3.2:72009737-72009756 MS.gene77472:intron 20.0%
!! CTTGTTTGATTGAAATTTAA+TGG - chr3.2:72009782-72009801 None:intergenic 20.0%
!! GAAATAATTAATGTACATTG+AGG - chr3.2:72010215-72010234 None:intergenic 20.0%
!! GATTAAAATGCAATAGATAA+GGG + chr3.2:72010509-72010528 MS.gene77472:intron 20.0%
!! TAACATAAATAAATTGGATC+AGG - chr3.2:72010252-72010271 None:intergenic 20.0%
!! TGATTAAAATGCAATAGATA+AGG + chr3.2:72010508-72010527 MS.gene77472:intron 20.0%
!! TTTGGATTTATGATATTTGA+TGG + chr3.2:72009732-72009751 MS.gene77472:intron 20.0%
!!! AATAGAATAACATTGATAAC+TGG - chr3.2:72011285-72011304 None:intergenic 20.0%
! ACATAAATAAATTGGATCAG+GGG - chr3.2:72010250-72010269 None:intergenic 25.0%
! ATGTGTATCCTTATTCATTA+TGG + chr3.2:72010466-72010485 MS.gene77472:intron 25.0%
! CTCAAAAGATCTTATAAATG+GGG - chr3.2:72010149-72010168 None:intergenic 25.0%
! GTTGTATTAACATCTTAGAA+GGG + chr3.2:72010557-72010576 MS.gene77472:intron 25.0%
! TAACTAATTATCTCTCATCA+AGG + chr3.2:72010293-72010312 MS.gene77472:intron 25.0%
! TGTTGTATTAACATCTTAGA+AGG + chr3.2:72010556-72010575 MS.gene77472:intron 25.0%
! TTTGATTATAGAGCAAACAA+TGG - chr3.2:72010785-72010804 None:intergenic 25.0%
!! AATATACAGAGCATTATGTA+AGG - chr3.2:72009959-72009978 None:intergenic 25.0%
!! ATATACAGAGCATTATGTAA+GGG - chr3.2:72009958-72009977 None:intergenic 25.0%
!! CAGAATGAAATATAATGGAA+TGG - chr3.2:72010977-72010996 None:intergenic 25.0%
!! TAATTTTCCATTCCATTGTT+TGG - chr3.2:72010900-72010919 None:intergenic 25.0%
!! TTTTAATACAAGGGTAGAAA+TGG + chr3.2:72010837-72010856 MS.gene77472:intron 25.0%
!! TTTTCAATTCAAAATGTCTC+AGG + chr3.2:72010002-72010021 MS.gene77472:intron 25.0%
AAAGATCTTATAAATGGGGA+TGG - chr3.2:72010145-72010164 None:intergenic 30.0%
AACAAAAATTAGGCTCTGTT+TGG - chr3.2:72011025-72011044 None:intergenic 30.0%
CAAATAAATTTGGCCATAAC+TGG + chr3.2:72011125-72011144 MS.gene77472:CDS 30.0%
CATCATAAAGAAACCAAACA+AGG + chr3.2:72010926-72010945 MS.gene77472:intron 30.0%
CATTCCATTGTTTGGAAATT+GGG - chr3.2:72010892-72010911 None:intergenic 30.0%
CCACCTTTAGCAAATAAATT+TGG + chr3.2:72011115-72011134 MS.gene77472:CDS 30.0%
CGAAACCAATTGAATATCTT+CGG + chr3.2:72009537-72009556 MS.gene77472:CDS 30.0%
GAAACCAATTGAATATCTTC+GGG + chr3.2:72009538-72009557 MS.gene77472:CDS 30.0%
GAGAGCAGAATGAAATATAA+TGG - chr3.2:72010982-72011001 None:intergenic 30.0%
GAGGGAATGAAAAAATTTGA+AGG - chr3.2:72009853-72009872 None:intergenic 30.0%
TAAAGAAACCAAACAAGGAA+TGG + chr3.2:72010931-72010950 MS.gene77472:intron 30.0%
TCCACTAACCATAATGAATA+AGG - chr3.2:72010477-72010496 None:intergenic 30.0%
TCCTTATTCATTATGGTTAG+TGG + chr3.2:72010473-72010492 MS.gene77472:intron 30.0%
TGATATTTGATGGAATGGAT+TGG + chr3.2:72009742-72009761 MS.gene77472:intron 30.0%
TTATCCCGAAGATATTCAAT+TGG - chr3.2:72009545-72009564 None:intergenic 30.0%
TTTGAAGGATTGAATGGTAA+AGG - chr3.2:72009838-72009857 None:intergenic 30.0%
TTTGGATTAATGGAACAGAA+CGG - chr3.2:72011007-72011026 None:intergenic 30.0%
! AATAGATAAGGGTATGTCAA+TGG + chr3.2:72010520-72010539 MS.gene77472:intron 30.0%
! ATTCACGTGTTTTTCTCTAA+AGG + chr3.2:72010374-72010393 MS.gene77472:intron 30.0%
! ATTTTTGAATTACCACGGTT+TGG + chr3.2:72010704-72010723 MS.gene77472:intron 30.0%
! CCAAATTTATTTGCTAAAGG+TGG - chr3.2:72011118-72011137 None:intergenic 30.0%
! TATACAGAGCATTATGTAAG+GGG - chr3.2:72009957-72009976 None:intergenic 30.0%
! TGAAATATAATGGAATGGAG+CGG - chr3.2:72010972-72010991 None:intergenic 30.0%
! TGGCCAAATTTATTTGCTAA+AGG - chr3.2:72011121-72011140 None:intergenic 30.0%
! TTATTTGCTAAAGGTGGAAT+GGG - chr3.2:72011112-72011131 None:intergenic 30.0%
! TTCACGTGTTTTTCTCTAAA+GGG + chr3.2:72010375-72010394 MS.gene77472:intron 30.0%
! TTTATTTGCTAAAGGTGGAA+TGG - chr3.2:72011113-72011132 None:intergenic 30.0%
!!! AGCTTTACTTTTTTAGTCTC+AGG + chr3.2:72010038-72010057 MS.gene77472:intron 30.0%
AAGGATTGAATGGTAAAGGA+TGG - chr3.2:72009834-72009853 None:intergenic 35.0%
ACAAAATTCTTACCAAACCG+TGG - chr3.2:72010719-72010738 None:intergenic 35.0%
ACATTTAGTAGGAGGGTAAA+AGG - chr3.2:72009919-72009938 None:intergenic 35.0%
ATCTCTCATCAAGGTAAACA+TGG + chr3.2:72010302-72010321 MS.gene77472:intron 35.0%
CAAAGATTCCATTCCTTGTT+TGG - chr3.2:72010942-72010961 None:intergenic 35.0%
CAATCAAACAAGTAAGCGAA+TGG + chr3.2:72009790-72009809 MS.gene77472:intron 35.0%
CATTTAGTAGGAGGGTAAAA+GGG - chr3.2:72009918-72009937 None:intergenic 35.0%
CCAATTTCCAAACAATGGAA+TGG + chr3.2:72010890-72010909 MS.gene77472:intron 35.0%
CCATTCCATTGTTTGGAAAT+TGG - chr3.2:72010893-72010912 None:intergenic 35.0%
GCCATTAGTCATATTCCTTT+AGG + chr3.2:72011354-72011373 MS.gene77472:CDS 35.0%
GCCTAAAGGAATATGACTAA+TGG - chr3.2:72011358-72011377 None:intergenic 35.0%
GTTGAACACATTTAGTAGGA+GGG - chr3.2:72009926-72009945 None:intergenic 35.0%
TAAAGGGGGTCCTATATTTA+GGG + chr3.2:72010391-72010410 MS.gene77472:intron 35.0%
TCGTGTTGAACACATTTAGT+AGG - chr3.2:72009930-72009949 None:intergenic 35.0%
TGTTGAACACATTTAGTAGG+AGG - chr3.2:72009927-72009946 None:intergenic 35.0%
TTAGGCTCTGTTTGGATTAA+TGG - chr3.2:72011017-72011036 None:intergenic 35.0%
! ATACAGAGCATTATGTAAGG+GGG - chr3.2:72009956-72009975 None:intergenic 35.0%
! CTTTTTCTCTCTTAGGACTT+AGG + chr3.2:72009704-72009723 MS.gene77472:intron 35.0%
! GACATAAACAGATATTGGCT+TGG - chr3.2:72011257-72011276 None:intergenic 35.0%
! TATTTGCTAAAGGTGGAATG+GGG - chr3.2:72011111-72011130 None:intergenic 35.0%
! TGTACGTCTTTTTCTCTCTT+AGG + chr3.2:72009697-72009716 MS.gene77472:intron 35.0%
!! ATAAACAGATATTGGCTTGG+TGG - chr3.2:72011254-72011273 None:intergenic 35.0%
!! GAGCAAACAATGGATTTTAG+AGG - chr3.2:72010775-72010794 None:intergenic 35.0%
!! TCACGTGTTTTTCTCTAAAG+GGG + chr3.2:72010376-72010395 MS.gene77472:intron 35.0%
!! TTTGATGGAATGGATTGGAT+TGG + chr3.2:72009747-72009766 MS.gene77472:intron 35.0%
!!! CGGTTTGGTAAGAATTTTGT+TGG + chr3.2:72010719-72010738 MS.gene77472:intron 35.0%
AAAAGCGAAGCGGCAAAAAA+CGG + chr3.2:72009448-72009467 MS.gene77472:CDS 40.0%
AAAGGGGGTCCTATATTTAG+GGG + chr3.2:72010392-72010411 MS.gene77472:intron 40.0%
ACAAGAAGAGGCTGAAGAAA+AGG + chr3.2:72009637-72009656 MS.gene77472:CDS 40.0%
ACGTACACTTATGTTACGAG+CGG - chr3.2:72009684-72009703 None:intergenic 40.0%
ATCGGATTCGGAATCTGATT+CGG + chr3.2:72009484-72009503 MS.gene77472:CDS 40.0%
CATTGCATACGTCTAACAGA+GGG - chr3.2:72009871-72009890 None:intergenic 40.0%
CTAAAGGGGGTCCTATATTT+AGG + chr3.2:72010390-72010409 MS.gene77472:intron 40.0%
CTTAGGACTTAGGCTATGTT+TGG + chr3.2:72009714-72009733 MS.gene77472:intron 40.0%
GAATTGGATACAGTGTTGCA+CGG + chr3.2:72009392-72009411 MS.gene77472:CDS 40.0%
GATCTTATAAATGGGGATGG+AGG - chr3.2:72010142-72010161 None:intergenic 40.0%
GTAATGTAGTAGCTGCCTAA+AGG - chr3.2:72011372-72011391 None:intergenic 40.0%
TCCACCCAATTTCCAAACAA+TGG + chr3.2:72010885-72010904 MS.gene77472:intron 40.0%
TCCATTGTTTGGAAATTGGG+TGG - chr3.2:72010889-72010908 None:intergenic 40.0%
TGTTTGGAAATTGGGTGGAA+TGG - chr3.2:72010884-72010903 None:intergenic 40.0%
TTGGAAGGATGAACATCTTC+TGG - chr3.2:72011414-72011433 None:intergenic 40.0%
! AAATTGGATCAGGGGTATAG+TGG - chr3.2:72010242-72010261 None:intergenic 40.0%
! ACGAAAAATAGCGGGGAATA+GGG - chr3.2:72009580-72009599 None:intergenic 40.0%
! GGAAAAGTACAAGGACAATC+AGG + chr3.2:72011213-72011232 MS.gene77472:CDS 40.0%
! GGGTTTGAAGTACGAGTTTA+AGG + chr3.2:72011317-72011336 MS.gene77472:intron 40.0%
! GTACTTTTCCAAAGCACACT+TGG - chr3.2:72011203-72011222 None:intergenic 40.0%
! TATAATGGAATGGAGCGGAA+TGG - chr3.2:72010967-72010986 None:intergenic 40.0%
!! CACGTGTTTTTCTCTAAAGG+GGG + chr3.2:72010377-72010396 MS.gene77472:intron 40.0%
!! GTGTGCTTTGGAAAAGTACA+AGG + chr3.2:72011204-72011223 MS.gene77472:CDS 40.0%
!!! GGATGAACATCTTCTGGTTT+TGG - chr3.2:72011408-72011427 None:intergenic 40.0%
!!! TGGTTTTGGTGTTGCTTTGA+AGG - chr3.2:72011394-72011413 None:intergenic 40.0%
AACGGAACCAGAACCAGAAT+CGG + chr3.2:72009466-72009485 MS.gene77472:CDS 45.0%
ACCAGAACCAGAATCGGATT+CGG + chr3.2:72009472-72009491 MS.gene77472:CDS 45.0%
AGAAGACGCCTAGTATGAGA+CGG + chr3.2:72010612-72010631 MS.gene77472:intron 45.0%
AGCGCGTACACGAAAAATAG+CGG - chr3.2:72009589-72009608 None:intergenic 45.0%
AGTCGTGAGAGAACAAGAAG+AGG + chr3.2:72009625-72009644 MS.gene77472:CDS 45.0%
ATGGAACACGACTTGATCAC+AGG - chr3.2:72011486-72011505 None:intergenic 45.0%
CCATTGCATACGTCTAACAG+AGG - chr3.2:72009872-72009891 None:intergenic 45.0%
CCTCTGTTAGACGTATGCAA+TGG + chr3.2:72009869-72009888 MS.gene77472:intron 45.0%
CGAGTTTAAGGAGCTTGTCA+AGG + chr3.2:72011329-72011348 MS.gene77472:CDS 45.0%
CTACCTCTGCCCCTAAATAT+AGG - chr3.2:72010404-72010423 None:intergenic 45.0%
CTCGTGATCGTCTATAGGAA+CGG - chr3.2:72011158-72011177 None:intergenic 45.0%
GATACCCAGTCCCAATCAAT+TGG - chr3.2:72009518-72009537 None:intergenic 45.0%
GGAACCAATTGATTGGGACT+GGG + chr3.2:72009511-72009530 MS.gene77472:CDS 45.0%
GGAACCGGAACCAATTGATT+GGG + chr3.2:72009505-72009524 MS.gene77472:CDS 45.0%
GGATTAATGGAACAGAACGG+AGG - chr3.2:72011004-72011023 None:intergenic 45.0%
GGGGCAGAGGTAGTATATTA+AGG + chr3.2:72010411-72010430 MS.gene77472:intron 45.0%
GGTCTTCAAATACTCAGCGA+CGG - chr3.2:72009663-72009682 None:intergenic 45.0%
TCAGATTCCGAATCCGATTC+TGG - chr3.2:72009482-72009501 None:intergenic 45.0%
TCGTGATCGTCTATAGGAAC+GGG - chr3.2:72011157-72011176 None:intergenic 45.0%
TTGGAGAGTCGAATGAGAAG+AGG - chr3.2:72011184-72011203 None:intergenic 45.0%
! CACGAAAAATAGCGGGGAAT+AGG - chr3.2:72009581-72009600 None:intergenic 45.0%
! CAGTCCCAATCAATTGGTTC+CGG - chr3.2:72009512-72009531 None:intergenic 45.0%
!! TTCGGAATCTGATTCGGAAC+CGG + chr3.2:72009490-72009509 MS.gene77472:CDS 45.0%
!! ATTAAATTAAAACAAAAATT+AGG - chr3.2:72011035-72011054 None:intergenic 5.0%
ATCGTCTATAGGAACGGGTC+TGG - chr3.2:72011152-72011171 None:intergenic 50.0%
CACGACTTGATCACAGGTTC+AGG - chr3.2:72011480-72011499 None:intergenic 50.0%
CGCGTACACGAAAAATAGCG+GGG - chr3.2:72009587-72009606 None:intergenic 50.0%
CGGAACCAATTGATTGGGAC+TGG + chr3.2:72009510-72009529 MS.gene77472:CDS 50.0%
CGGAACCGGAACCAATTGAT+TGG + chr3.2:72009504-72009523 MS.gene77472:CDS 50.0%
GCGCGTACACGAAAAATAGC+GGG - chr3.2:72009588-72009607 None:intergenic 50.0%
GGTCCTATATTTAGGGGCAG+AGG + chr3.2:72010398-72010417 MS.gene77472:intron 50.0%
TCGACTCTCCAAGTGTGCTT+TGG + chr3.2:72011192-72011211 MS.gene77472:CDS 50.0%
TCGTCTATAGGAACGGGTCT+GGG - chr3.2:72011151-72011170 None:intergenic 50.0%
! GGAATGGGGATAGCATCGAA+GGG - chr3.2:72011097-72011116 None:intergenic 50.0%
! TGGAATGGGGATAGCATCGA+AGG - chr3.2:72011098-72011117 None:intergenic 50.0%
! TTTTCCTCGCAGCTTTCCAG+AGG - chr3.2:72009431-72009450 None:intergenic 50.0%
!! TCCGAATCCGATTCTGGTTC+TGG - chr3.2:72009476-72009495 None:intergenic 50.0%
ACCTCCCTCCGTCTCATACT+AGG - chr3.2:72010623-72010642 None:intergenic 55.0%
AGACGCCTAGTATGAGACGG+AGG + chr3.2:72010615-72010634 MS.gene77472:intron 55.0%
AGGCCTACAGTCACAGACGT+GGG - chr3.2:72011460-72011479 None:intergenic 55.0%
GAAAGTGGTGGCAGACGTGT+TGG - chr3.2:72011433-72011452 None:intergenic 55.0%
GACGCCTAGTATGAGACGGA+GGG + chr3.2:72010616-72010635 MS.gene77472:intron 55.0%
GCTGCGAGGAAAAAGCGAAG+CGG + chr3.2:72009438-72009457 MS.gene77472:CDS 55.0%
GGCTGCTCGTGATCGTCTAT+AGG - chr3.2:72011163-72011182 None:intergenic 55.0%
ACAGACGTGGGCCTGGAAAG+TGG - chr3.2:72011448-72011467 None:intergenic 60.0%
AGGCCCACGTCTGTGACTGT+AGG + chr3.2:72011454-72011473 MS.gene77472:CDS 60.0%
CACGTCTGCCACCACTTTCC+AGG + chr3.2:72011434-72011453 MS.gene77472:CDS 60.0%
CAGGCCTACAGTCACAGACG+TGG - chr3.2:72011461-72011480 None:intergenic 60.0%
CGCAGCTTTCCAGAGGAGGT+GGG - chr3.2:72009424-72009443 None:intergenic 60.0%
GAACGGGTCTGGGCCAGTTA+TGG - chr3.2:72011141-72011160 None:intergenic 60.0%
GCAGCTTTCCAGAGGAGGTG+GGG - chr3.2:72009423-72009442 None:intergenic 60.0%
GCCTAGTATGAGACGGAGGG+AGG + chr3.2:72010619-72010638 MS.gene77472:intron 60.0%
GTGGTGGCAGACGTGTTGGA+AGG - chr3.2:72011429-72011448 None:intergenic 60.0%
TACAGTCACAGACGTGGGCC+TGG - chr3.2:72011455-72011474 None:intergenic 60.0%
TCCTCGCAGCTTTCCAGAGG+AGG - chr3.2:72009428-72009447 None:intergenic 60.0%
TCGCAGCTTTCCAGAGGAGG+TGG - chr3.2:72009425-72009444 None:intergenic 60.0%
! ACCTCCTCTGGAAAGCTGCG+AGG + chr3.2:72009424-72009443 MS.gene77472:CDS 60.0%
GACGTGGGCCTGGAAAGTGG+TGG - chr3.2:72011445-72011464 None:intergenic 65.0%
CGGCGTCACCCCACCTCCTC+TGG + chr3.2:72009412-72009431 MS.gene77472:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 72009383 72011515 72009383 ID=MS.gene77472
chr3.2 mRNA 72009383 72011515 72009383 ID=MS.gene77472.t1;Parent=MS.gene77472
chr3.2 exon 72009383 72009697 72009383 ID=MS.gene77472.t1.exon1;Parent=MS.gene77472.t1
chr3.2 CDS 72009383 72009697 72009383 ID=cds.MS.gene77472.t1;Parent=MS.gene77472.t1
chr3.2 exon 72011094 72011234 72011094 ID=MS.gene77472.t1.exon2;Parent=MS.gene77472.t1
chr3.2 CDS 72011094 72011234 72011094 ID=cds.MS.gene77472.t1;Parent=MS.gene77472.t1
chr3.2 exon 72011318 72011515 72011318 ID=MS.gene77472.t1.exon3;Parent=MS.gene77472.t1
chr3.2 CDS 72011318 72011515 72011318 ID=cds.MS.gene77472.t1;Parent=MS.gene77472.t1
Gene Sequence

>MS.gene77472

ATGTCGATGGAATTGGATACAGTGTTGCACGGCGTCACCCCACCTCCTCTGGAAAGCTGCGAGGAAAAAGCGAAGCGGCAAAAAACGGAACCAGAACCAGAATCGGATTCGGAATCTGATTCGGAACCGGAACCAATTGATTGGGACTGGGTATCGAAACCAATTGAATATCTTCGGGATAAGTATGAAGATGACCCTATTCCCCGCTATTTTTCGTGTACGCGCTTTGTTTATAAGAATAAAGTCGTGAGAGAACAAGAAGAGGCTGAAGAAAAGGCCGTCGCTGAGTATTTGAAGACCGCTCGTAACATAAGTGTACGTCTTTTTCTCTCTTAGGACTTAGGCTATGTTTGGATTTATGATATTTGATGGAATGGATTGGATTGGTGTAGTAACCCATTAAATTTCAATCAAACAAGTAAGCGAATGGAGTGAAATGTAACGCATTCCATCCTTTACCATTCAATCCTTCAAATTTTTTCATTCCCTCTGTTAGACGTATGCAATGGAATGAAACATAATTTAATTATGACCCTTTTACCCTCCTACTAAATGTGTTCAACACGAGAACCCCCTTACATAATGCTCTGTATATTGCATGCTTTTTTCTCCATTTGTTTTTTCAATTCAAAATGTCTCAGGTACGCAATTACATAGCTTTACTTTTTTAGTCTCAGGTATGCATACTTCTATAAGATCAATCCCTTTTTAGAACAAATAAATTTTATTACAGATTAATGTCACTTTATAATACTACCTCCATCCCCATTTATAAGATCTTTTGAGTTTTTTCTTTGTCTCTTATTATTGTAATAGCAACAAATCAGACCCTCAATGTACATTAATTATTTCTTTACCACTATACCCCTGATCCAATTTATTTATGTTACATTTTTTCCTATGAAAACATTAACTAATTATCTCTCATCAAGGTAAACATGGAAAACAATAACAATTGTTAACAAAATTAATTCAACAATCAACTTTCTTAATTCACGTGTTTTTCTCTAAAGGGGGTCCTATATTTAGGGGCAGAGGTAGTATATTAAGGAAATGATTAATATTGATGATTTTGATGGTGAAATGTGTATCCTTATTCATTATGGTTAGTGGAATATTTATAGATGATTAAAATGCAATAGATAAGGGTATGTCAATGGAAAAAGTAATAAATGTTGTATTAACATCTTAGAAGGGATAAATAATTTGAGATAAATTTTTTTTAGGAAAGAAGACGCCTAGTATGAGACGGAGGGAGGTACTTAACACTACACACACAATTATATTTTGTTGTTTTTACACGAGAATCACCTTAGTTTTTATTTTTGAATTACCACGGTTTGGTAAGAATTTTGTTGGCATGCTAAATCAAATTAGAATGCTCTATAACCTCTAAAATCCATTGTTTGCTCTATAATCAAATTAGTAATAATATTTTTACATAATAATATTGTTTTTAATACAAGGGTAGAAATGGAATAAAAATCTATTATTTGTTCCATTCCACCCAATTTCCAAACAATGGAATGGAAAATTATTGTAACATCATAAAGAAACCAAACAAGGAATGGAATCTTTGTTCCATTCCGCTCCATTCCATTATATTTCATTCTGCTCTCCTCCGTTCTGTTCCATTAATCCAAACAGAGCCTAATTTTTGTTTTAATTTAATTGTGTTTGACTCTTTAATCTGTTTCTGTACTCTGCACAGCCCTTCGATGCTATCCCCATTCCACCTTTAGCAAATAAATTTGGCCATAACTGGCCCAGACCCGTTCCTATAGACGATCACGAGCAGCCTCTTCTCATTCGACTCTCCAAGTGTGCTTTGGAAAAGTACAAGGACAATCAGGTTATAAACTACTTAACCACCAAGCCAATATCTGTTTATGTCTTAATCCAGTTATCAATGTTATTCTATTTTGTTTTATTTAGGGTTTGAAGTACGAGTTTAAGGAGCTTGTCAAGGCAGCCATTAGTCATATTCCTTTAGGCAGCTACTACATTACCTTCAAAGCAACACCAAAACCAGAAGATGTTCATCCTTCCAACACGTCTGCCACCACTTTCCAGGCCCACGTCTGTGACTGTAGGCCTGAACCTGTGATCAAGTCGTGTTCCATTAAAACCTAA
Protein sequence

>MS.gene77472.t1

MSMELDTVLHGVTPPPLESCEEKAKRQKTEPEPESDSESDSEPEPIDWDWVSKPIEYLRDKYEDDPIPRYFSCTRFVYKNKVVREQEEAEEKAVAEYLKTARNISPFDAIPIPPLANKFGHNWPRPVPIDDHEQPLLIRLSKCALEKYKDNQGLKYEFKELVKAAISHIPLGSYYITFKATPKPEDVHPSNTSATTFQAHVCDCRPEPVIKSCSIKT