Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044370.t1 | AES71816.1 | 56.2 | 258 | 12 | 1 | 80 | 337 | 49 | 205 | 5.80E-65 | 258.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044370.t1 | G7J9H7 | 56.2 | 258 | 12 | 1 | 80 | 337 | 49 | 205 | 4.2e-65 | 258.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044370.t1 | MTR_3g083080 | 68.398 | 231 | 40 | 3 | 1 | 231 | 1 | 198 | 5.66e-105 | 306 |
| MS.gene044370.t1 | MTR_3g083080 | 93.396 | 106 | 7 | 0 | 232 | 337 | 100 | 205 | 5.13e-67 | 209 |
| MS.gene044370.t1 | MTR_3g083030 | 65.086 | 232 | 69 | 4 | 1 | 231 | 1 | 221 | 5.04e-98 | 290 |
| MS.gene044370.t1 | MTR_3g083030 | 60.748 | 107 | 39 | 2 | 233 | 338 | 126 | 230 | 3.39e-33 | 123 |
| MS.gene044370.t1 | MTR_3g083050 | 51.293 | 232 | 78 | 4 | 1 | 231 | 1 | 198 | 4.96e-67 | 209 |
| MS.gene044370.t1 | MTR_3g083050 | 60.748 | 107 | 39 | 2 | 233 | 338 | 103 | 207 | 4.81e-33 | 122 |
| MS.gene044370.t1 | MTR_3g082340 | 35.622 | 233 | 116 | 8 | 1 | 224 | 1 | 208 | 9.98e-32 | 119 |
| MS.gene044370.t1 | MTR_3g082420 | 38.426 | 216 | 110 | 9 | 17 | 224 | 7 | 207 | 3.16e-30 | 115 |
| MS.gene044370.t1 | MTR_3g086030 | 49.074 | 108 | 47 | 1 | 54 | 161 | 4 | 103 | 3.66e-24 | 97.1 |
| MS.gene044370.t1 | MTR_3g083150 | 34.188 | 234 | 118 | 6 | 1 | 229 | 1 | 203 | 4.86e-21 | 90.1 |
| MS.gene044370.t1 | MTR_3g083150 | 44.737 | 114 | 55 | 5 | 232 | 338 | 100 | 212 | 2.26e-13 | 68.6 |
| MS.gene044370.t1 | MTR_3g083100 | 46.667 | 120 | 51 | 4 | 230 | 338 | 57 | 174 | 2.13e-17 | 79.0 |
| MS.gene044370.t1 | MTR_3g083100 | 50.000 | 68 | 32 | 1 | 160 | 225 | 86 | 153 | 7.59e-14 | 69.3 |
| MS.gene044370.t1 | MTR_3g080680 | 34.000 | 200 | 109 | 9 | 39 | 230 | 6 | 190 | 1.23e-15 | 74.7 |
| MS.gene044370.t1 | MTR_4g055800 | 32.308 | 195 | 106 | 6 | 27 | 209 | 85 | 265 | 1.07e-14 | 73.9 |
| MS.gene044370.t1 | MTR_8g461300 | 34.940 | 166 | 83 | 10 | 83 | 231 | 34 | 191 | 3.09e-12 | 65.1 |
| MS.gene044370.t1 | MTR_8g461300 | 39.831 | 118 | 54 | 7 | 233 | 337 | 85 | 198 | 2.32e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 85 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATTCCGGTTCGGATTTC+AGG | 0.202617 | 3.3:-69844571 | None:intergenic |
| CAGGCCTCCTGTCCCATACT+TGG | 0.214136 | 3.3:-69845340 | None:intergenic |
| CGCCCACACATAAACATAAA+AGG | 0.266595 | 3.3:-69844770 | None:intergenic |
| TTCAGTTCCGGTGGCAATTC+CGG | 0.272860 | 3.3:-69844620 | None:intergenic |
| CAAGTATGGGACAGGAGGCC+TGG | 0.285262 | 3.3:+69845341 | MS.gene044370:CDS |
| TCATATTTCTCTCGCCGTTT+CGG | 0.296681 | 3.3:-69844680 | None:intergenic |
| TCCGGTTCCGACTTCAGTTC+GGG | 0.301504 | 3.3:-69844602 | None:intergenic |
| TCGGGTTCAGGTTGCAATTC+CGG | 0.306399 | 3.3:-69844584 | None:intergenic |
| TCCGACTTCAGTTCGGGTTC+AGG | 0.333407 | 3.3:-69844596 | None:intergenic |
| TTCGGCTGCGACTTCAGTTC+CGG | 0.363626 | 3.3:-69844662 | None:intergenic |
| GCGATTTACGTACAAGAATA+AGG | 0.366136 | 3.3:+69844790 | MS.gene044370:CDS |
| TCCGGTTCCAACTTCAGTTC+CGG | 0.379777 | 3.3:-69844632 | None:intergenic |
| TTCCGGTTCCGACTTCAGTT+CGG | 0.385258 | 3.3:-69844603 | None:intergenic |
| TGCAGAGGGGAGTGAGTCTA+AGG | 0.391841 | 3.3:-69847290 | None:intergenic |
| TCGCCAGGGCTAAGCATAGA+AGG | 0.414237 | 3.3:+69844843 | MS.gene044370:CDS |
| TCCTGTCCCATACTTGGGCC+TGG | 0.435293 | 3.3:-69845334 | None:intergenic |
| TCTTGTTCCGTACTTGTGCC+TGG | 0.436222 | 3.3:-69847557 | None:intergenic |
| AGATCTTCTGTTAAGCTGAT+AGG | 0.442837 | 3.3:-69847264 | None:intergenic |
| TTCAGGTTGCAATTCCGGTT+CGG | 0.449691 | 3.3:-69844579 | None:intergenic |
| GAATCACATACATGTTTGTT+CGG | 0.450921 | 3.3:+69844503 | MS.gene044370:CDS |
| AAGTATGGGACAGGAGGCCT+GGG | 0.453171 | 3.3:+69845342 | MS.gene044370:CDS |
| ACCCGAACTGAAGTCGGAAC+CGG | 0.459886 | 3.3:+69844601 | MS.gene044370:CDS |
| GAGTTCAAGGCGAAGATCAT+TGG | 0.466501 | 3.3:-69845048 | None:intergenic |
| TTCAGTTCCGGTGCTAACTC+CGG | 0.468654 | 3.3:-69844650 | None:intergenic |
| CAGGAGGCCTGGGCCACCTG+TGG | 0.469194 | 3.3:+69845352 | MS.gene044370:CDS |
| AGGCCTCCTGTCCCATACTT+GGG | 0.473912 | 3.3:-69845339 | None:intergenic |
| GACTTGACCACAGGTGGCCC+AGG | 0.480427 | 3.3:-69845359 | None:intergenic |
| AAGTACGGAACAAGAGGCTT+GGG | 0.481160 | 3.3:+69847565 | MS.gene044370:CDS |
| TGCAGAGGGGAGTGAGTTCA+AGG | 0.488921 | 3.3:-69845061 | None:intergenic |
| ACCGGAACTGAAGTTGGAAC+CGG | 0.489325 | 3.3:+69844631 | MS.gene044370:CDS |
| TCCAGGCCCAAGTATGGGAC+AGG | 0.489866 | 3.3:+69845333 | MS.gene044370:CDS |
| GGCTCAGATTCAACAAGATA+AGG | 0.491800 | 3.3:+69844811 | MS.gene044370:CDS |
| GAAAATTATAGCAGGGCTGT+TGG | 0.493991 | 3.3:-69845312 | None:intergenic |
| GAAAATTATAGCAGGGCTGT+TGG | 0.493991 | 3.3:-69847535 | None:intergenic |
| ATAAGGATATTAGAATCGCC+AGG | 0.505840 | 3.3:+69844828 | MS.gene044370:CDS |
| CAAGTACGGAACAAGAGGCT+TGG | 0.516339 | 3.3:+69847564 | MS.gene044370:CDS |
| TCATCGCAGCAATCCGTGGC+AGG | 0.518220 | 3.3:-69844536 | None:intergenic |
| ATTGCCACCGGAACTGAAGT+TGG | 0.518984 | 3.3:+69844625 | MS.gene044370:CDS |
| AACTGAAGTCGCAGCCGAAA+CGG | 0.523556 | 3.3:+69844666 | MS.gene044370:CDS |
| TGGGCCTGGAAAATTATAGC+AGG | 0.523864 | 3.3:-69845320 | None:intergenic |
| TGTGCCTGGAAAATTATAGC+AGG | 0.526873 | 3.3:-69847543 | None:intergenic |
| CAAGTACAATGCTGAGAACC+AGG | 0.527031 | 3.3:+69845097 | MS.gene044370:CDS |
| CAAGTACAATGCTGAGAACC+AGG | 0.527031 | 3.3:+69847326 | MS.gene044370:CDS |
| ATACGTATGACCAGGTCTCC+AGG | 0.532099 | 3.3:-69847475 | None:intergenic |
| AACGGCGAGAGAAATATGAA+TGG | 0.532868 | 3.3:+69844684 | MS.gene044370:CDS |
| GCGCCTTCTATGCTTAGCCC+TGG | 0.537473 | 3.3:-69844846 | None:intergenic |
| AAGATCATTGGTTAAGTCGA+TGG | 0.537635 | 3.3:-69845036 | None:intergenic |
| GTGAAGACAACCTGGAGACC+TGG | 0.543016 | 3.3:+69847465 | MS.gene044370:CDS |
| ACGGCGAGAGAAATATGAAT+GGG | 0.545074 | 3.3:+69844685 | MS.gene044370:CDS |
| TTCTTGTTTCTGTGCTTGAA+AGG | 0.546292 | 3.3:-69847505 | None:intergenic |
| CTGACATTGTGAAGACAACC+TGG | 0.546641 | 3.3:+69845228 | MS.gene044370:CDS |
| CTGACATTGTGAAGACAACC+TGG | 0.547939 | 3.3:+69847457 | MS.gene044370:CDS |
| GAAGTGCCTGAAATCCGAAC+CGG | 0.551355 | 3.3:+69844565 | MS.gene044370:CDS |
| CGGCGTCATCCGACCTGCCA+CGG | 0.552704 | 3.3:+69844523 | MS.gene044370:CDS |
| GTGAAGACAACCTGGAGACC+TGG | 0.554795 | 3.3:+69845236 | MS.gene044370:CDS |
| ATACATACGACCAGGTCTCC+AGG | 0.556794 | 3.3:-69845246 | None:intergenic |
| GTCTAATGCAAACTTGCAGA+GGG | 0.557076 | 3.3:-69845075 | None:intergenic |
| ATGGCACACGACTTGACCAC+AGG | 0.557195 | 3.3:-69847591 | None:intergenic |
| ACGGATTGCTGCGATGAAAG+AGG | 0.563989 | 3.3:+69844542 | MS.gene044370:CDS |
| CGGATTGCTGCGATGAAAGA+GGG | 0.569780 | 3.3:+69844543 | MS.gene044370:CDS |
| GTCTAACGCAAACTTGCAGA+GGG | 0.574230 | 3.3:-69847304 | None:intergenic |
| ACCTGAACCCGAACTGAAGT+CGG | 0.580010 | 3.3:+69844595 | MS.gene044370:CDS |
| ATTATAGCAGGGCTGTTGGA+AGG | 0.580406 | 3.3:-69845308 | None:intergenic |
| ATTATAGCAGGGCTGTTGGA+AGG | 0.580406 | 3.3:-69847531 | None:intergenic |
| CGCAGCAATCCGTGGCAGGT+CGG | 0.581919 | 3.3:-69844532 | None:intergenic |
| AGATCATTGGTTAAGTCGAT+GGG | 0.582159 | 3.3:-69845035 | None:intergenic |
| GGAGGAGTGATGGCATCGAA+AGG | 0.589477 | 3.3:-69847210 | None:intergenic |
| GTCGGAACCGGAATTGCCAC+CGG | 0.601982 | 3.3:+69844613 | MS.gene044370:CDS |
| TGTCTAATGCAAACTTGCAG+AGG | 0.606673 | 3.3:-69845076 | None:intergenic |
| AGGCACAAGTACGGAACAAG+AGG | 0.609707 | 3.3:+69847559 | MS.gene044370:CDS |
| TCTTTCATCGCAGCAATCCG+TGG | 0.614163 | 3.3:-69844540 | None:intergenic |
| GTTGGAACCGGAGTTAGCAC+CGG | 0.614360 | 3.3:+69844643 | MS.gene044370:CDS |
| GGTTCCAACTTCAGTTCCGG+TGG | 0.621297 | 3.3:-69844629 | None:intergenic |
| AGGCCCAAGTATGGGACAGG+AGG | 0.621879 | 3.3:+69845336 | MS.gene044370:CDS |
| CAAGAGGCTTGGGCCACCTG+TGG | 0.623165 | 3.3:+69847575 | MS.gene044370:CDS |
| TGTCTAACGCAAACTTGCAG+AGG | 0.623827 | 3.3:-69847305 | None:intergenic |
| GTGCCTGGAAAATTATAGCA+GGG | 0.642603 | 3.3:-69847542 | None:intergenic |
| GGGCCTGGAAAATTATAGCA+GGG | 0.644489 | 3.3:-69845319 | None:intergenic |
| GCACACGACTTGACCACAGG+TGG | 0.646887 | 3.3:-69845365 | None:intergenic |
| GCACACGACTTGACCACAGG+TGG | 0.646887 | 3.3:-69847588 | None:intergenic |
| TAAGGATATTAGAATCGCCA+GGG | 0.647318 | 3.3:+69844829 | MS.gene044370:CDS |
| GTAATGTAATACGTATGACC+AGG | 0.669250 | 3.3:-69847483 | None:intergenic |
| GTAATGTAATACATACGACC+AGG | 0.698620 | 3.3:-69845254 | None:intergenic |
| TCTAATGCAAACTTGCAGAG+GGG | 0.755777 | 3.3:-69845074 | None:intergenic |
| TCTAACGCAAACTTGCAGAG+GGG | 0.780492 | 3.3:-69847303 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATCATATTTTTTTAAGA+AGG | + | chr3.3:69846725-69846744 | MS.gene044370:intron | 10.0% |
| !! | AAAATGTTGTACTAAAAAAA+TGG | + | chr3.3:69846808-69846827 | MS.gene044370:intron | 15.0% |
| !! | AAATTAAATACAGTATCAAT+TGG | - | chr3.3:69845881-69845900 | None:intergenic | 15.0% |
| !! | AGATTAAAATACAATTTCAA+AGG | - | chr3.3:69845537-69845556 | None:intergenic | 15.0% |
| !! | ATTAAAATACAATTTCAAAG+GGG | - | chr3.3:69845535-69845554 | None:intergenic | 15.0% |
| !! | GATTAAAATACAATTTCAAA+GGG | - | chr3.3:69845536-69845555 | None:intergenic | 15.0% |
| !!! | ATTCATTTTATTTTTCTACA+TGG | + | chr3.3:69846466-69846485 | MS.gene044370:intron | 15.0% |
| !!! | ATTGATACTGTATTTAATTT+TGG | + | chr3.3:69845881-69845900 | MS.gene044370:intron | 15.0% |
| !! | AAAAAATAAAAATAGACGGA+AGG | + | chr3.3:69846549-69846568 | MS.gene044370:intron | 20.0% |
| !! | AACTATTAACATTATTACCA+TGG | - | chr3.3:69845851-69845870 | None:intergenic | 20.0% |
| !!! | AAATGTAGATTTGCATTTTT+TGG | - | chr3.3:69847234-69847253 | None:intergenic | 20.0% |
| !!! | ACTAATTTTTCTCATGATTT+AGG | + | chr3.3:69845187-69845206 | MS.gene044370:intron | 20.0% |
| !!! | CAACATGTTTAATCTTTTTT+TGG | + | chr3.3:69845482-69845501 | MS.gene044370:intron | 20.0% |
| !!! | GACGTTTATTTTAAAGAAAA+GGG | - | chr3.3:69845773-69845792 | None:intergenic | 20.0% |
| !!! | GCAGTTTATTTTAAAGAAAA+GGG | - | chr3.3:69846164-69846183 | None:intergenic | 20.0% |
| !!! | GGTTTTGTGAAATTTATTAA+AGG | + | chr3.3:69846343-69846362 | MS.gene044370:intron | 20.0% |
| !!! | TCTTTAAAATAAACGTCAAT+TGG | + | chr3.3:69845776-69845795 | MS.gene044370:intron | 20.0% |
| !!! | TGACGTTTATTTTAAAGAAA+AGG | - | chr3.3:69845774-69845793 | None:intergenic | 20.0% |
| !!! | TGCAGTTTATTTTAAAGAAA+AGG | - | chr3.3:69846165-69846184 | None:intergenic | 20.0% |
| ! | AAGATCTTGAGAAATATGAA+TGG | + | chr3.3:69846913-69846932 | MS.gene044370:intron | 25.0% |
| ! | AGATCTTGAGAAATATGAAT+GGG | + | chr3.3:69846914-69846933 | MS.gene044370:intron | 25.0% |
| ! | ATGTGGACATAAATATCATT+CGG | + | chr3.3:69845659-69845678 | MS.gene044370:intron | 25.0% |
| ! | ATTAACATTATTACCATGGT+GGG | - | chr3.3:69845847-69845866 | None:intergenic | 25.0% |
| ! | GATATCTTCATTCAAAACAA+TGG | + | chr3.3:69846673-69846692 | MS.gene044370:intron | 25.0% |
| ! | GTTCAAAATAGTGAATTTCA+TGG | - | chr3.3:69845597-69845616 | None:intergenic | 25.0% |
| ! | TATTAACATTATTACCATGG+TGG | - | chr3.3:69845848-69845867 | None:intergenic | 25.0% |
| ! | TTATTGTAATTTAAGGAACC+TGG | - | chr3.3:69847347-69847366 | None:intergenic | 25.0% |
| ! | TTCTTGTAATTTATTGAACC+TGG | - | chr3.3:69845118-69845137 | None:intergenic | 25.0% |
| !! | ACTAATTTTTGTCCTGATTT+AGG | + | chr3.3:69847416-69847435 | MS.gene044370:intron | 25.0% |
| !! | CTAATTTTTGTCCTGATTTA+GGG | + | chr3.3:69847417-69847436 | MS.gene044370:intron | 25.0% |
| !! | TAGATAGATGTTTTACAGAT+AGG | - | chr3.3:69847107-69847126 | None:intergenic | 25.0% |
| !!! | GTTTTGAATGAAGATATCAT+AGG | - | chr3.3:69846671-69846690 | None:intergenic | 25.0% |
| AACAATGGACACATTATTGT+TGG | + | chr3.3:69846688-69846707 | MS.gene044370:intron | 30.0% | |
| AGAAACTAGATTAGAGTATG+TGG | + | chr3.3:69845642-69845661 | MS.gene044370:intron | 30.0% | |
| ATTTCACAAAACCACATACA+TGG | - | chr3.3:69846336-69846355 | None:intergenic | 30.0% | |
| CAAAATAGTGAATTTCATGG+AGG | - | chr3.3:69845594-69845613 | None:intergenic | 30.0% | |
| CATAACAGTGTAATTCATGA+AGG | - | chr3.3:69845941-69845960 | None:intergenic | 30.0% | |
| CATGAAGGAAAACAAAAAAC+TGG | - | chr3.3:69845926-69845945 | None:intergenic | 30.0% | |
| CTTATCTGTGTTAATGCATT+CGG | - | chr3.3:69846188-69846207 | None:intergenic | 30.0% | |
| CTTCATGAATTACACTGTTA+TGG | + | chr3.3:69845939-69845958 | MS.gene044370:intron | 30.0% | |
| GAAATTCAAGCGACATAATT+TGG | + | chr3.3:69846310-69846329 | MS.gene044370:intron | 30.0% | |
| GAACTATTGAAATTAGCAAG+CGG | + | chr3.3:69845613-69845632 | MS.gene044370:intron | 30.0% | |
| GAATCACATACATGTTTGTT+CGG | + | chr3.3:69844503-69844522 | MS.gene044370:CDS | 30.0% | |
| GAGACAATTTCACACTAAAA+AGG | - | chr3.3:69846385-69846404 | None:intergenic | 30.0% | |
| TTCATGGAGGAAAAAATAAC+TGG | - | chr3.3:69845581-69845600 | None:intergenic | 30.0% | |
| ! | AAGCCTTTTATGTTTATGTG+TGG | + | chr3.3:69844767-69844786 | MS.gene044370:CDS | 30.0% |
| ! | ACTCTAGTTTCTTTGGATTT+AGG | - | chr3.3:69846018-69846037 | None:intergenic | 30.0% |
| ! | AGCCTTTTATGTTTATGTGT+GGG | + | chr3.3:69844768-69844787 | MS.gene044370:CDS | 30.0% |
| ! | ATACTTCACTCTAGTTTCTT+TGG | - | chr3.3:69846025-69846044 | None:intergenic | 30.0% |
| ! | TATTGTTGTTGCACTTCATT+TGG | + | chr3.3:69845693-69845712 | MS.gene044370:intron | 30.0% |
| ! | TTTTGTATCTAAGCAACTCA+TGG | + | chr3.3:69846265-69846284 | MS.gene044370:intron | 30.0% |
| !!! | CAATGTAGATTTGCTTTTTC+TGG | - | chr3.3:69845005-69845024 | None:intergenic | 30.0% |
| !!! | TGTAGATTTGCATTTTTTGG+AGG | - | chr3.3:69847231-69847250 | None:intergenic | 30.0% |
| !!! | TTCTTGTTTTTGTGCTTGAA+AGG | - | chr3.3:69845279-69845298 | None:intergenic | 30.0% |
| AAAAAACTGGCTGAAGCTTA+TGG | - | chr3.3:69845913-69845932 | None:intergenic | 35.0% | |
| AATTGGAAGCTGCATTATGT+GGG | + | chr3.3:69845793-69845812 | MS.gene044370:intron | 35.0% | |
| ACATAATTTGGCCATGTATG+TGG | + | chr3.3:69846322-69846341 | MS.gene044370:intron | 35.0% | |
| ACCTAACACATACATCATCA+CGG | + | chr3.3:69845398-69845417 | MS.gene044370:intron | 35.0% | |
| AGATCTTCTGTTAAGCTGAT+AGG | - | chr3.3:69847267-69847286 | None:intergenic | 35.0% | |
| ATAAGGATATTAGAATCGCC+AGG | + | chr3.3:69844828-69844847 | MS.gene044370:CDS | 35.0% | |
| CAAAATTTGCACCCTAAATC+AGG | - | chr3.3:69847431-69847450 | None:intergenic | 35.0% | |
| CATACAATGAGGTGCAAAAA+TGG | - | chr3.3:69846127-69846146 | None:intergenic | 35.0% | |
| GCGATTTACGTACAAGAATA+AGG | + | chr3.3:69844790-69844809 | MS.gene044370:CDS | 35.0% | |
| GTAATGTAATACATACGACC+AGG | - | chr3.3:69845257-69845276 | None:intergenic | 35.0% | |
| GTAATGTAATACGTATGACC+AGG | - | chr3.3:69847486-69847505 | None:intergenic | 35.0% | |
| TAAGGATATTAGAATCGCCA+GGG | + | chr3.3:69844829-69844848 | MS.gene044370:CDS | 35.0% | |
| TAGATAGATGCGTTACTGAT+AGG | - | chr3.3:69844880-69844899 | None:intergenic | 35.0% | |
| TATCTAAGCAACTCATGGAT+TGG | + | chr3.3:69846270-69846289 | MS.gene044370:intron | 35.0% | |
| ! | AAGATCATTGGTTAAGTCGA+TGG | - | chr3.3:69845039-69845058 | None:intergenic | 35.0% |
| ! | AGATCATTGGTTAAGTCGAT+GGG | - | chr3.3:69845038-69845057 | None:intergenic | 35.0% |
| ! | TAATTTTCCAGGCACAAGTA+CGG | + | chr3.3:69847550-69847569 | MS.gene044370:CDS | 35.0% |
| ! | TGATGATGTATGTGTTAGGT+AGG | - | chr3.3:69845398-69845417 | None:intergenic | 35.0% |
| !! | TTCTTGTTTCTGTGCTTGAA+AGG | - | chr3.3:69847508-69847527 | None:intergenic | 35.0% |
| !!! | TGTAGATTTGCTTTTTCTGG+AGG | - | chr3.3:69845002-69845021 | None:intergenic | 35.0% |
| AACGGCGAGAGAAATATGAA+TGG | + | chr3.3:69844684-69844703 | MS.gene044370:CDS | 40.0% | |
| ACGGCGAGAGAAATATGAAT+GGG | + | chr3.3:69844685-69844704 | MS.gene044370:CDS | 40.0% | |
| AGAAAAGGGTCAACATTCCA+TGG | - | chr3.3:69845759-69845778 | None:intergenic | 40.0% | |
| AGTGAAGTCAGTAGCGAAAA+AGG | - | chr3.3:69846096-69846115 | None:intergenic | 40.0% | |
| ATAAGGAGATTAGAATCGCC+AGG | + | chr3.3:69847055-69847074 | MS.gene044370:intron | 40.0% | |
| CAATTGGAAGCTGCATTATG+TGG | + | chr3.3:69845792-69845811 | MS.gene044370:intron | 40.0% | |
| CGCCCACACATAAACATAAA+AGG | - | chr3.3:69844773-69844792 | None:intergenic | 40.0% | |
| GAAAATTATAGCAGGGCTGT+TGG | - | chr3.3:69845315-69845334 | None:intergenic | 40.0% | |
| GCATTCCAATGCATACAATG+AGG | - | chr3.3:69846138-69846157 | None:intergenic | 40.0% | |
| GGAGAATTGAAGTTAGCAAG+TGG | + | chr3.3:69845960-69845979 | MS.gene044370:intron | 40.0% | |
| GGCTCAGATTCAACAAGATA+AGG | + | chr3.3:69844811-69844830 | MS.gene044370:CDS | 40.0% | |
| GTCTAATGCAAACTTGCAGA+GGG | - | chr3.3:69845078-69845097 | None:intergenic | 40.0% | |
| GTGCCTGGAAAATTATAGCA+GGG | - | chr3.3:69847545-69847564 | None:intergenic | 40.0% | |
| TAAGGAGATTAGAATCGCCA+GGG | + | chr3.3:69847056-69847075 | MS.gene044370:intron | 40.0% | |
| TATGTGTTAGGTAGGCTTCA+TGG | - | chr3.3:69845390-69845409 | None:intergenic | 40.0% | |
| TCATATTTCTCTCGCCGTTT+CGG | - | chr3.3:69844683-69844702 | None:intergenic | 40.0% | |
| TCTAATGCAAACTTGCAGAG+GGG | - | chr3.3:69845077-69845096 | None:intergenic | 40.0% | |
| TGTCTAATGCAAACTTGCAG+AGG | - | chr3.3:69845079-69845098 | None:intergenic | 40.0% | |
| TGTGCCTGGAAAATTATAGC+AGG | - | chr3.3:69847546-69847565 | None:intergenic | 40.0% | |
| TTGCACCTCATTGTATGCAT+TGG | + | chr3.3:69846130-69846149 | MS.gene044370:intron | 40.0% | |
| ! | AATTTTCCAGGCCCAAGTAT+GGG | + | chr3.3:69845328-69845347 | MS.gene044370:CDS | 40.0% |
| ! | ACCGTGATGATGTATGTGTT+AGG | - | chr3.3:69845402-69845421 | None:intergenic | 40.0% |
| ! | TAATTTTCCAGGCCCAAGTA+TGG | + | chr3.3:69845327-69845346 | MS.gene044370:CDS | 40.0% |
| !! | GTGCATGTGTTAGGTTTTGA+TGG | - | chr3.3:69845825-69845844 | None:intergenic | 40.0% |
| !!! | TGCATTTTTTGGAGGAGTGA+TGG | - | chr3.3:69847223-69847242 | None:intergenic | 40.0% |
| !!! | TTTTTCGCTACTGACTTCAC+TGG | + | chr3.3:69846095-69846114 | MS.gene044370:intron | 40.0% |
| AAGTACGGAACAAGAGGCTT+GGG | + | chr3.3:69847565-69847584 | MS.gene044370:CDS | 45.0% | |
| AGCAAGTGGAAACTAGTGAG+CGG | + | chr3.3:69845974-69845993 | MS.gene044370:intron | 45.0% | |
| ATTATAGCAGGGCTGTTGGA+AGG | - | chr3.3:69845311-69845330 | None:intergenic | 45.0% | |
| CAAGTACAATGCTGAGAACC+AGG | + | chr3.3:69845097-69845116 | MS.gene044370:CDS | 45.0% | |
| CTGACATTGTGAAGACAACC+TGG | + | chr3.3:69845228-69845247 | MS.gene044370:CDS | 45.0% | |
| CTGACTTCAACTGTAAGCCA+TGG | + | chr3.3:69845739-69845758 | MS.gene044370:intron | 45.0% | |
| GAGTTCAAGGCGAAGATCAT+TGG | - | chr3.3:69845051-69845070 | None:intergenic | 45.0% | |
| GGCTTACAGTTGAAGTCAGT+AGG | - | chr3.3:69845738-69845757 | None:intergenic | 45.0% | |
| GGGCCTGGAAAATTATAGCA+GGG | - | chr3.3:69845322-69845341 | None:intergenic | 45.0% | |
| GGGCGATTTACGCATAAGAA+AGG | + | chr3.3:69847017-69847036 | MS.gene044370:intron | 45.0% | |
| GTCTAACGCAAACTTGCAGA+GGG | - | chr3.3:69847307-69847326 | None:intergenic | 45.0% | |
| TCTAACGCAAACTTGCAGAG+GGG | - | chr3.3:69847306-69847325 | None:intergenic | 45.0% | |
| TGGGCCTGGAAAATTATAGC+AGG | - | chr3.3:69845323-69845342 | None:intergenic | 45.0% | |
| TGTCTAACGCAAACTTGCAG+AGG | - | chr3.3:69847308-69847327 | None:intergenic | 45.0% | |
| ! | CAGCCCTGCTATAATTTTCC+AGG | + | chr3.3:69845316-69845335 | MS.gene044370:CDS | 45.0% |
| ! | GAGCTTTTTATGCTTAGCCC+TGG | - | chr3.3:69847076-69847095 | None:intergenic | 45.0% |
| !! | TTCAGGTTGCAATTCCGGTT+CGG | - | chr3.3:69844582-69844601 | None:intergenic | 45.0% |
| !! | ATAAAAAAAATAAAAATAGA+CGG | + | chr3.3:69846545-69846564 | MS.gene044370:intron | 5.0% |
| !! | ATAATAATTATTGTAATTTA+AGG | - | chr3.3:69847354-69847373 | None:intergenic | 5.0% |
| !!! | AAAAAATTGATTTTTTTTAA+TGG | - | chr3.3:69846864-69846883 | None:intergenic | 5.0% |
| AACTGAAGTCGCAGCCGAAA+CGG | + | chr3.3:69844666-69844685 | MS.gene044370:CDS | 50.0% | |
| ACCGGAACTGAAGTTGGAAC+CGG | + | chr3.3:69844631-69844650 | MS.gene044370:CDS | 50.0% | |
| ACCTGAACCCGAACTGAAGT+CGG | + | chr3.3:69844595-69844614 | MS.gene044370:CDS | 50.0% | |
| AGGCACAAGTACGGAACAAG+AGG | + | chr3.3:69847559-69847578 | MS.gene044370:CDS | 50.0% | |
| AGTGAGCGGTATGCTATGCT+AGG | + | chr3.3:69845988-69846007 | MS.gene044370:intron | 50.0% | |
| ATACATACGACCAGGTCTCC+AGG | - | chr3.3:69845249-69845268 | None:intergenic | 50.0% | |
| ATACGTATGACCAGGTCTCC+AGG | - | chr3.3:69847478-69847497 | None:intergenic | 50.0% | |
| ATTGCCACCGGAACTGAAGT+TGG | + | chr3.3:69844625-69844644 | MS.gene044370:CDS | 50.0% | |
| CAAGTACGGAACAAGAGGCT+TGG | + | chr3.3:69847564-69847583 | MS.gene044370:CDS | 50.0% | |
| CGGATTGCTGCGATGAAAGA+GGG | + | chr3.3:69844543-69844562 | MS.gene044370:CDS | 50.0% | |
| TCCGGTTCCAACTTCAGTTC+CGG | - | chr3.3:69844635-69844654 | None:intergenic | 50.0% | |
| TCTTGTTCCGTACTTGTGCC+TGG | - | chr3.3:69847560-69847579 | None:intergenic | 50.0% | |
| TCTTTCATCGCAGCAATCCG+TGG | - | chr3.3:69844543-69844562 | None:intergenic | 50.0% | |
| TTCAGTTCCGGTGGCAATTC+CGG | - | chr3.3:69844623-69844642 | None:intergenic | 50.0% | |
| TTCCGGTTCCGACTTCAGTT+CGG | - | chr3.3:69844606-69844625 | None:intergenic | 50.0% | |
| ! | ACGGATTGCTGCGATGAAAG+AGG | + | chr3.3:69844542-69844561 | MS.gene044370:CDS | 50.0% |
| ! | GAAGTGCCTGAAATCCGAAC+CGG | + | chr3.3:69844565-69844584 | MS.gene044370:CDS | 50.0% |
| ! | TTCAGTTCCGGTGCTAACTC+CGG | - | chr3.3:69844653-69844672 | None:intergenic | 50.0% |
| !! | GCAATTCCGGTTCGGATTTC+AGG | - | chr3.3:69844574-69844593 | None:intergenic | 50.0% |
| !! | TCGGGTTCAGGTTGCAATTC+CGG | - | chr3.3:69844587-69844606 | None:intergenic | 50.0% |
| !!! | TGCTTTTTCTGGAGGAGCGA+TGG | - | chr3.3:69844994-69845013 | None:intergenic | 50.0% |
| AAGTATGGGACAGGAGGCCT+GGG | + | chr3.3:69845342-69845361 | MS.gene044370:CDS | 55.0% | |
| ACCCGAACTGAAGTCGGAAC+CGG | + | chr3.3:69844601-69844620 | MS.gene044370:CDS | 55.0% | |
| AGGCCTCCTGTCCCATACTT+GGG | - | chr3.3:69845342-69845361 | None:intergenic | 55.0% | |
| ATGGCACACGACTTGACCAC+AGG | - | chr3.3:69845371-69845390 | None:intergenic | 55.0% | |
| CCTAACACATGCACCCACCA+TGG | + | chr3.3:69845831-69845850 | MS.gene044370:intron | 55.0% | |
| GGTTCCAACTTCAGTTCCGG+TGG | - | chr3.3:69844632-69844651 | None:intergenic | 55.0% | |
| GTGAAGACAACCTGGAGACC+TGG | + | chr3.3:69845236-69845255 | MS.gene044370:CDS | 55.0% | |
| GTTGGAACCGGAGTTAGCAC+CGG | + | chr3.3:69844643-69844662 | MS.gene044370:CDS | 55.0% | |
| TCCGGTTCCGACTTCAGTTC+GGG | - | chr3.3:69844605-69844624 | None:intergenic | 55.0% | |
| TCGCCAGGGCTAAGCATAGA+AGG | + | chr3.3:69844843-69844862 | MS.gene044370:CDS | 55.0% | |
| TGCAGAGGGGAGTGAGTCTA+AGG | - | chr3.3:69847293-69847312 | None:intergenic | 55.0% | |
| TGCAGAGGGGAGTGAGTTCA+AGG | - | chr3.3:69845064-69845083 | None:intergenic | 55.0% | |
| TTCGGCTGCGACTTCAGTTC+CGG | - | chr3.3:69844665-69844684 | None:intergenic | 55.0% | |
| ! | GGAGGAGTGATGGCATCGAA+AGG | - | chr3.3:69847213-69847232 | None:intergenic | 55.0% |
| ! | TCCGACTTCAGTTCGGGTTC+AGG | - | chr3.3:69844599-69844618 | None:intergenic | 55.0% |
| !! | CCATGGTGGGTGCATGTGTT+AGG | - | chr3.3:69845834-69845853 | None:intergenic | 55.0% |
| AGGCCCAAGTATGGGACAGG+AGG | + | chr3.3:69845336-69845355 | MS.gene044370:CDS | 60.0% | |
| CAAGTATGGGACAGGAGGCC+TGG | + | chr3.3:69845341-69845360 | MS.gene044370:CDS | 60.0% | |
| CAGGCCTCCTGTCCCATACT+TGG | - | chr3.3:69845343-69845362 | None:intergenic | 60.0% | |
| GCACACGACTTGACCACAGG+TGG | - | chr3.3:69845368-69845387 | None:intergenic | 60.0% | |
| GCGCCTTCTATGCTTAGCCC+TGG | - | chr3.3:69844849-69844868 | None:intergenic | 60.0% | |
| GTCGGAACCGGAATTGCCAC+CGG | + | chr3.3:69844613-69844632 | MS.gene044370:CDS | 60.0% | |
| TCATCGCAGCAATCCGTGGC+AGG | - | chr3.3:69844539-69844558 | None:intergenic | 60.0% | |
| TCCAGGCCCAAGTATGGGAC+AGG | + | chr3.3:69845333-69845352 | MS.gene044370:CDS | 60.0% | |
| TCCTGTCCCATACTTGGGCC+TGG | - | chr3.3:69845337-69845356 | None:intergenic | 60.0% | |
| CAAGAGGCTTGGGCCACCTG+TGG | + | chr3.3:69847575-69847594 | MS.gene044370:CDS | 65.0% | |
| CGCAGCAATCCGTGGCAGGT+CGG | - | chr3.3:69844535-69844554 | None:intergenic | 65.0% | |
| GACTTGACCACAGGTGGCCC+AGG | - | chr3.3:69845362-69845381 | None:intergenic | 65.0% | |
| CGGCGTCATCCGACCTGCCA+CGG | + | chr3.3:69844523-69844542 | MS.gene044370:CDS | 70.0% | |
| CAGGAGGCCTGGGCCACCTG+TGG | + | chr3.3:69845352-69845371 | MS.gene044370:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 69844494 | 69847623 | 69844494 | ID=MS.gene044370 |
| chr3.3 | mRNA | 69844494 | 69847623 | 69844494 | ID=MS.gene044370.t1;Parent=MS.gene044370 |
| chr3.3 | exon | 69844494 | 69844883 | 69844494 | ID=MS.gene044370.t1.exon1;Parent=MS.gene044370.t1 |
| chr3.3 | CDS | 69844494 | 69844883 | 69844494 | ID=cds.MS.gene044370.t1;Parent=MS.gene044370.t1 |
| chr3.3 | exon | 69844981 | 69845118 | 69844981 | ID=MS.gene044370.t1.exon2;Parent=MS.gene044370.t1 |
| chr3.3 | CDS | 69844981 | 69845118 | 69844981 | ID=cds.MS.gene044370.t1;Parent=MS.gene044370.t1 |
| chr3.3 | exon | 69845209 | 69845373 | 69845209 | ID=MS.gene044370.t1.exon3;Parent=MS.gene044370.t1 |
| chr3.3 | CDS | 69845209 | 69845373 | 69845209 | ID=cds.MS.gene044370.t1;Parent=MS.gene044370.t1 |
| chr3.3 | exon | 69847210 | 69847347 | 69847210 | ID=MS.gene044370.t1.exon4;Parent=MS.gene044370.t1 |
| chr3.3 | CDS | 69847210 | 69847347 | 69847210 | ID=cds.MS.gene044370.t1;Parent=MS.gene044370.t1 |
| chr3.3 | exon | 69847438 | 69847623 | 69847438 | ID=MS.gene044370.t1.exon5;Parent=MS.gene044370.t1 |
| chr3.3 | CDS | 69847438 | 69847623 | 69847438 | ID=cds.MS.gene044370.t1;Parent=MS.gene044370.t1 |
| Gene Sequence |
| Protein sequence |
