Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71524.t1 | RHN69093.1 | 88.2 | 211 | 19 | 1 | 1 | 211 | 22 | 226 | 4.10E-86 | 328.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71524.t1 | G7J9I4 | 88.2 | 211 | 19 | 1 | 1 | 211 | 1 | 205 | 2.9e-86 | 328.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene71524 | -0.811459 | 6.93E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71524.t1 | MTR_3g083150 | 87.383 | 214 | 21 | 2 | 1 | 214 | 1 | 208 | 6.57e-119 | 340 |
| MS.gene71524.t1 | MTR_3g083150 | 58.654 | 104 | 42 | 1 | 196 | 299 | 94 | 196 | 3.75e-30 | 113 |
| MS.gene71524.t1 | MTR_3g083030 | 38.500 | 200 | 100 | 5 | 1 | 181 | 1 | 196 | 2.09e-31 | 117 |
| MS.gene71524.t1 | MTR_3g083030 | 45.361 | 97 | 43 | 3 | 203 | 299 | 126 | 212 | 8.59e-16 | 75.5 |
| MS.gene71524.t1 | MTR_3g083080 | 37.273 | 220 | 117 | 7 | 1 | 216 | 1 | 203 | 1.19e-29 | 112 |
| MS.gene71524.t1 | MTR_3g083080 | 46.939 | 98 | 44 | 3 | 202 | 299 | 100 | 189 | 4.99e-16 | 75.5 |
| MS.gene71524.t1 | MTR_3g083050 | 39.459 | 185 | 96 | 4 | 1 | 181 | 1 | 173 | 1.42e-29 | 112 |
| MS.gene71524.t1 | MTR_3g083050 | 45.361 | 97 | 43 | 3 | 203 | 299 | 103 | 189 | 2.25e-15 | 73.9 |
| MS.gene71524.t1 | MTR_3g082340 | 35.814 | 215 | 122 | 7 | 1 | 205 | 1 | 209 | 1.39e-28 | 109 |
| MS.gene71524.t1 | MTR_3g083100 | 56.436 | 101 | 39 | 2 | 202 | 299 | 52 | 150 | 3.23e-25 | 99.4 |
| MS.gene71524.t1 | MTR_3g083100 | 49.091 | 110 | 52 | 2 | 98 | 204 | 44 | 152 | 7.71e-22 | 90.5 |
| MS.gene71524.t1 | MTR_3g082420 | 35.751 | 193 | 110 | 8 | 21 | 205 | 22 | 208 | 1.60e-22 | 93.6 |
| MS.gene71524.t1 | MTR_3g080680 | 32.632 | 190 | 107 | 8 | 21 | 200 | 2 | 180 | 1.73e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 87 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCTTTAGCAAATAAATT+TGG | 0.179740 | 3.4:+78294765 | MS.gene71524:CDS |
| GGGTTTGAAGTACGAGTTTA+AGG | 0.181770 | 3.4:+78294976 | MS.gene71524:intron |
| CTTCCCTGCTATTACTTTCC+TGG | 0.247794 | 3.4:+78296663 | MS.gene71524:CDS |
| TCCGAATCCGATTCTGGTTC+TGG | 0.264411 | 3.4:-78292647 | None:intergenic |
| CAAATAAATTTGGCCATAAC+TGG | 0.265315 | 3.4:+78294775 | MS.gene71524:CDS |
| TCAGATTCCGAATCCGATTC+TGG | 0.272868 | 3.4:-78292653 | None:intergenic |
| GGATGAACATCTTCTGGTTT+TGG | 0.280325 | 3.4:-78295064 | None:intergenic |
| TTGGAAGGATGAACATCTTC+TGG | 0.292357 | 3.4:-78295070 | None:intergenic |
| TTATTTGCTAAAGGTGGAAT+AGG | 0.323459 | 3.4:-78294759 | None:intergenic |
| GCCATTAGTCATATTCCTTT+AGG | 0.349715 | 3.4:+78295013 | MS.gene71524:CDS |
| CGGCGTCACCCCACCTCCTC+TGG | 0.352863 | 3.4:+78292586 | MS.gene71524:CDS |
| ATCTGTTATGTGAAACGGTC+TGG | 0.364592 | 3.4:-78296372 | None:intergenic |
| TCGACTCTCCAAGTGTGCTT+TGG | 0.365473 | 3.4:+78294842 | MS.gene71524:CDS |
| ACATTTGCTAAGGTTGGAAC+AGG | 0.370038 | 3.4:-78296332 | None:intergenic |
| CGGAACCGGAACCAATTGAT+TGG | 0.370659 | 3.4:+78292678 | MS.gene71524:CDS |
| CAGTCCCAATCAATTGGTTC+CGG | 0.406500 | 3.4:-78292683 | None:intergenic |
| TATTTGCTAAAGGTGGAATA+GGG | 0.418257 | 3.4:-78294758 | None:intergenic |
| ATGTAATGTAATAAGTAGTA+AGG | 0.419396 | 3.4:-78296597 | None:intergenic |
| TTGCAGAATGTCGATGGAAT+TGG | 0.433101 | 3.4:+78292550 | None:intergenic |
| AAAATACAATCATGACAATC+AGG | 0.434603 | 3.4:+78296439 | MS.gene71524:CDS |
| TGGCCAAATTTATTTGCTAA+AGG | 0.435844 | 3.4:-78294768 | None:intergenic |
| CCACATACATTTGCTAAGGT+TGG | 0.436602 | 3.4:-78296338 | None:intergenic |
| TACAGTCACAGACGTGGGTC+TGG | 0.437710 | 3.4:-78295111 | None:intergenic |
| TCGCAGCTTTCCAGAGGAGG+TGG | 0.437827 | 3.4:-78292596 | None:intergenic |
| ATCGTCTATAGGAACAGGTC+TGG | 0.442132 | 3.4:-78294799 | None:intergenic |
| GATACCCAGTCCCAATCAAT+TGG | 0.444473 | 3.4:-78292689 | None:intergenic |
| AAAGTACAACAAGGACAATC+AGG | 0.451367 | 3.4:+78294866 | MS.gene71524:CDS |
| GAACAGGTCTGGGCCAGTTA+TGG | 0.459899 | 3.4:-78294788 | None:intergenic |
| TTCGGAATCTGATTCGGAAC+CGG | 0.461844 | 3.4:+78292664 | MS.gene71524:CDS |
| CGGAACCAATTGATTGGGAC+TGG | 0.463007 | 3.4:+78292684 | MS.gene71524:CDS |
| GAAAGTAATAGCAGGGAAGT+TGG | 0.467046 | 3.4:-78296659 | None:intergenic |
| ACAAGAAGAGGCTGAAGAAA+AGG | 0.467705 | 3.4:+78292811 | MS.gene71524:CDS |
| CCAAATTTATTTGCTAAAGG+TGG | 0.470541 | 3.4:-78294765 | None:intergenic |
| GGCTGCTCGTGATCGTCTAT+AGG | 0.476040 | 3.4:-78294810 | None:intergenic |
| TCGTGATCGTCTATAGGAAC+AGG | 0.480282 | 3.4:-78294804 | None:intergenic |
| AACGGAACCAGAACCAGAAT+CGG | 0.480456 | 3.4:+78292640 | MS.gene71524:CDS |
| ACCAGAACCAGAATCGGATT+CGG | 0.482522 | 3.4:+78292646 | MS.gene71524:CDS |
| ATCGGATTCGGAATCTGATT+CGG | 0.486643 | 3.4:+78292658 | MS.gene71524:CDS |
| TGACCTCTCCAAACTTGCCC+TGG | 0.487308 | 3.4:+78296415 | MS.gene71524:CDS |
| GAAACCGATTGAATATCTTC+AGG | 0.487507 | 3.4:+78292712 | MS.gene71524:CDS |
| GGAACCGGAACCAATTGATT+GGG | 0.488378 | 3.4:+78292679 | MS.gene71524:CDS |
| TCCTCGCAGCTTTCCAGAGG+AGG | 0.494982 | 3.4:-78292599 | None:intergenic |
| TCTGTTATGTGAAACGGTCT+GGG | 0.495398 | 3.4:-78296371 | None:intergenic |
| TTATCCTGAAGATATTCAAT+CGG | 0.498473 | 3.4:-78292716 | None:intergenic |
| ACCTGTCCTAGACGTGGGCC+AGG | 0.505299 | 3.4:-78296681 | None:intergenic |
| CGCAGCTTTCCAGAGGAGGT+GGG | 0.508578 | 3.4:-78292595 | None:intergenic |
| TGTAATGTAATAAGTAGTAA+GGG | 0.509079 | 3.4:-78296596 | None:intergenic |
| TTACATTACATTTGAAGCAA+AGG | 0.512602 | 3.4:+78296609 | MS.gene71524:CDS |
| GCCTAAAGGAATATGACTAA+TGG | 0.514370 | 3.4:-78295014 | None:intergenic |
| AAGGTCAACAAACTCGTACT+TGG | 0.523388 | 3.4:-78296548 | None:intergenic |
| TGGAATAGGGATAGCATCAA+AGG | 0.534895 | 3.4:-78294745 | None:intergenic |
| CGGGCAACCTGTCCTAGACG+TGG | 0.535590 | 3.4:-78296687 | None:intergenic |
| CGATCATCTGTTATGTGAAA+CGG | 0.539884 | 3.4:-78296377 | None:intergenic |
| GCCTCTTAGTTGCCTTGACA+AGG | 0.541690 | 3.4:-78296567 | None:intergenic |
| TGGGCCAGGAAAGTAATAGC+AGG | 0.542715 | 3.4:-78296667 | None:intergenic |
| TACTTTCCTGGCCCACGTCT+AGG | 0.546511 | 3.4:+78296675 | MS.gene71524:CDS |
| CGAGTTTAAGGAGCTTGTCA+AGG | 0.553566 | 3.4:+78294988 | MS.gene71524:CDS |
| GTTGCCACATACATTTGCTA+AGG | 0.555185 | 3.4:-78296342 | None:intergenic |
| AGTTGGAAGGATGAACATGA+TGG | 0.560819 | 3.4:-78296642 | None:intergenic |
| GTAATGTAGTAGCTGCCTAA+AGG | 0.562791 | 3.4:-78295028 | None:intergenic |
| GCAGCTTTCCAGAGGAGGTG+GGG | 0.563645 | 3.4:-78292594 | None:intergenic |
| CGAGTTTGTTGACCTTGTCA+AGG | 0.564814 | 3.4:+78296555 | MS.gene71524:CDS |
| CAAGTGTTGCAGAATGTCGA+TGG | 0.567440 | 3.4:+78292544 | None:intergenic |
| TGGAACAGGGATAGCATCGA+AGG | 0.569305 | 3.4:-78296318 | None:intergenic |
| GTTGGAAGGATGAACATGAT+GGG | 0.570527 | 3.4:-78296641 | None:intergenic |
| GTAATAGCAGGGAAGTTGGA+AGG | 0.570637 | 3.4:-78296655 | None:intergenic |
| GAAAGTGGTAGCAGACATGT+TGG | 0.570739 | 3.4:-78295089 | None:intergenic |
| AGTCGTGAGAGAACAAGAAG+AGG | 0.579539 | 3.4:+78292799 | MS.gene71524:CDS |
| TCGTCTATAGGAACAGGTCT+GGG | 0.582583 | 3.4:-78294798 | None:intergenic |
| GGAATAGGGATAGCATCAAA+GGG | 0.583911 | 3.4:-78294744 | None:intergenic |
| ACAGACGTGGGTCTGGAAAG+TGG | 0.585593 | 3.4:-78295104 | None:intergenic |
| CCAACCTTAGCAAATGTATG+TGG | 0.599683 | 3.4:+78296338 | MS.gene71524:CDS |
| ACCTTGTCAAGGCAACTAAG+AGG | 0.608978 | 3.4:+78296566 | MS.gene71524:CDS |
| GTAATGTAATAAGTAGTAAG+GGG | 0.621479 | 3.4:-78296595 | None:intergenic |
| GTGGTAGCAGACATGTTGGA+AGG | 0.625175 | 3.4:-78295085 | None:intergenic |
| TTTCCAGGGCAAGTTTGGAG+AGG | 0.629404 | 3.4:-78296418 | None:intergenic |
| TTGGAGAGTCGAATGAGAAG+TGG | 0.639275 | 3.4:-78294831 | None:intergenic |
| GGAACCAATTGATTGGGACT+GGG | 0.640773 | 3.4:+78292685 | MS.gene71524:CDS |
| CATTTGCTAAGGTTGGAACA+GGG | 0.643988 | 3.4:-78296331 | None:intergenic |
| GGGCCAGGAAAGTAATAGCA+GGG | 0.648257 | 3.4:-78296666 | None:intergenic |
| GAATTGGATACAGTGTTGCA+CGG | 0.652051 | 3.4:+78292566 | MS.gene71524:CDS |
| GGGCAACCTGTCCTAGACGT+GGG | 0.668086 | 3.4:-78296686 | None:intergenic |
| GGAACAGGGATAGCATCGAA+GGG | 0.668541 | 3.4:-78296317 | None:intergenic |
| ACCTCCTCTGGAAAGCTGCG+AGG | 0.671307 | 3.4:+78292598 | MS.gene71524:CDS |
| TGCTTTGGAAAAGTACAACA+AGG | 0.694400 | 3.4:+78294857 | MS.gene71524:CDS |
| GGTCTTCAAATACTCAGCGA+CGG | 0.718541 | 3.4:-78292834 | None:intergenic |
| ACGTACACTTATGTTACGAG+CGG | 0.729892 | 3.4:-78292855 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAAATTAAATCAAAAATT+AGG | - | chr3.4:78294685-78294704 | None:intergenic | 10.0% |
| !! | TAATTCAAAAATAAAAACTA+AGG | - | chr3.4:78294344-78294363 | None:intergenic | 10.0% |
| !!! | AAAATTTATTTGTTCTAAAA+AGG | - | chr3.4:78293672-78293691 | None:intergenic | 10.0% |
| !!! | AATTTGAGATAAATTTTTTT+AGG | + | chr3.4:78294236-78294255 | MS.gene71524:intron | 10.0% |
| !!! | ATAATATTGTTTTTAATACA+AGG | + | chr3.4:78294475-78294494 | MS.gene71524:intron | 10.0% |
| !!! | ATTCTATTTTGTTTTATTTA+GGG | + | chr3.4:78294956-78294975 | MS.gene71524:intron | 10.0% |
| !!! | TAATATTGTTTTTAATACAA+GGG | + | chr3.4:78294476-78294495 | MS.gene71524:intron | 10.0% |
| !!! | TATTCTATTTTGTTTTATTT+AGG | + | chr3.4:78294955-78294974 | MS.gene71524:intron | 10.0% |
| !!! | TTACATGTTTAATATTTTAT+AGG | + | chr3.4:78295217-78295236 | MS.gene71524:intron | 10.0% |
| !! | AAAATGTGACATAAATATAT+TGG | - | chr3.4:78293841-78293860 | None:intergenic | 15.0% |
| !! | AAATAATTAATGTACATTGA+GGG | - | chr3.4:78293797-78293816 | None:intergenic | 15.0% |
| !! | AATGAAACATAGATATAATA+TGG | - | chr3.4:78296490-78296509 | None:intergenic | 15.0% |
| !! | ATAAAGATATAAACAGATAT+TGG | - | chr3.4:78294915-78294934 | None:intergenic | 15.0% |
| !! | ATTATAAAAACAAAATGCTT+GGG | - | chr3.4:78295536-78295555 | None:intergenic | 15.0% |
| !! | TATTATAAAAACAAAATGCT+TGG | - | chr3.4:78295537-78295556 | None:intergenic | 15.0% |
| !! | TTGTTTGATTGAAATTTAAT+GGG | - | chr3.4:78292968-78292987 | None:intergenic | 15.0% |
| !!! | ATTAATATTGATGATTTTGA+TGG | + | chr3.4:78294089-78294108 | MS.gene71524:intron | 15.0% |
| !!! | ATTTTGAATTGAAAAACAAA+TGG | - | chr3.4:78293203-78293222 | None:intergenic | 15.0% |
| !!! | CTTGTATAGAATTTTATTTA+TGG | + | chr3.4:78295738-78295757 | MS.gene71524:intron | 15.0% |
| !!! | TGATATGAATATATGTTTTT+TGG | + | chr3.4:78295690-78295709 | MS.gene71524:intron | 15.0% |
| !!! | TTTTTATTTTTGAATTACCA+TGG | + | chr3.4:78294347-78294366 | MS.gene71524:intron | 15.0% |
| !! | AAACATATATTCATATCACA+AGG | - | chr3.4:78295688-78295707 | None:intergenic | 20.0% |
| !! | AAACTAGTACAAGTATTATT+GGG | - | chr3.4:78296003-78296022 | None:intergenic | 20.0% |
| !! | AAATAGAAATGTTATTACCA+TGG | - | chr3.4:78295190-78295209 | None:intergenic | 20.0% |
| !! | AACATATATTCATATCACAA+GGG | - | chr3.4:78295687-78295706 | None:intergenic | 20.0% |
| !! | AACTCAAAAGATCTTATAAA+TGG | - | chr3.4:78293734-78293753 | None:intergenic | 20.0% |
| !! | AAGTTATTAACGTTACAATT+TGG | + | chr3.4:78293312-78293331 | MS.gene71524:intron | 20.0% |
| !! | AAGTTATTAACGTTACAATT+TGG | - | chr3.4:78293331-78293312 | None:intergenic | 20.0% |
| !! | AATATTTGTAGGCTTAAAAA+TGG | + | chr3.4:78295249-78295268 | MS.gene71524:intron | 20.0% |
| !! | ACTCAAAAGATCTTATAAAT+GGG | - | chr3.4:78293733-78293752 | None:intergenic | 20.0% |
| !! | ATGTAATGTAATAAGTAGTA+AGG | - | chr3.4:78296600-78296619 | None:intergenic | 20.0% |
| !! | ATGTGTATCCTTATTAATTA+TGG | + | chr3.4:78294116-78294135 | MS.gene71524:intron | 20.0% |
| !! | ATTACCGATGAAATAAAATA+GGG | - | chr3.4:78293100-78293119 | None:intergenic | 20.0% |
| !! | ATTGTAACGTTAATAACTTA+TGG | + | chr3.4:78293490-78293509 | MS.gene71524:intron | 20.0% |
| !! | ATTGTAACGTTAATAACTTA+TGG | - | chr3.4:78293509-78293490 | None:intergenic | 20.0% |
| !! | ATTTATGATATTTGATGGAA+TGG | + | chr3.4:78292919-78292938 | MS.gene71524:intron | 20.0% |
| !! | CATAACAATTCTTCATAATT+CGG | - | chr3.4:78295776-78295795 | None:intergenic | 20.0% |
| !! | CTTGTTTGATTGAAATTTAA+TGG | - | chr3.4:78292969-78292988 | None:intergenic | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | + | chr3.4:78293462-78293481 | MS.gene71524:intron | 20.0% |
| !! | GAAACCAAAAAATAAGTTAA+GGG | - | chr3.4:78293481-78293462 | None:intergenic | 20.0% |
| !! | GAAACCAAAAATTAAGTTAA+GGG | - | chr3.4:78293339-78293358 | None:intergenic | 20.0% |
| !! | GAAATAATTAATGTACATTG+AGG | - | chr3.4:78293798-78293817 | None:intergenic | 20.0% |
| !! | GATTAAAATGCAATAGATAA+GGG | + | chr3.4:78294159-78294178 | MS.gene71524:intron | 20.0% |
| !! | TAAAGGCTTAATTAATGATT+TGG | - | chr3.4:78293609-78293628 | None:intergenic | 20.0% |
| !! | TATTACCGATGAAATAAAAT+AGG | - | chr3.4:78293101-78293120 | None:intergenic | 20.0% |
| !! | TGATTAAAATGCAATAGATA+AGG | + | chr3.4:78294158-78294177 | MS.gene71524:intron | 20.0% |
| !! | TGTAATGTAATAAGTAGTAA+GGG | - | chr3.4:78296599-78296618 | None:intergenic | 20.0% |
| !! | TTATAAAAACAAAATGCTTG+GGG | - | chr3.4:78295535-78295554 | None:intergenic | 20.0% |
| !! | TTGTAACGTTAATAACTTAT+GGG | + | chr3.4:78293491-78293510 | MS.gene71524:intron | 20.0% |
| !! | TTGTAACGTTAATAACTTAT+GGG | - | chr3.4:78293510-78293491 | None:intergenic | 20.0% |
| !! | TTTAAACTTGCATTTGATTA+TGG | + | chr3.4:78295289-78295308 | MS.gene71524:intron | 20.0% |
| !! | TTTGGATTTATGATATTTGA+TGG | + | chr3.4:78292914-78292933 | MS.gene71524:intron | 20.0% |
| !!! | AGAATGAAATATAATGGAAT+GGG | - | chr3.4:78294626-78294645 | None:intergenic | 20.0% |
| !!! | AGTTTTGTTTCTCTTATATT+AGG | + | chr3.4:78296522-78296541 | MS.gene71524:intron | 20.0% |
| !!! | GAATTTTCTTGTCTTAAAAA+TGG | + | chr3.4:78295867-78295886 | MS.gene71524:intron | 20.0% |
| !!! | GTTTTGTTTCTCTTATATTA+GGG | + | chr3.4:78296523-78296542 | MS.gene71524:intron | 20.0% |
| !!! | TAACTAGTTAATGTTTTCAT+AGG | - | chr3.4:78293866-78293885 | None:intergenic | 20.0% |
| !!! | TGAATATATGTTTTTTGGTT+TGG | + | chr3.4:78295695-78295714 | MS.gene71524:intron | 20.0% |
| !!! | TTTTGGCTTAATTACTATTT+TGG | + | chr3.4:78293252-78293271 | MS.gene71524:intron | 20.0% |
| ! | AAAATACAATCATGACAATC+AGG | + | chr3.4:78296439-78296458 | MS.gene71524:CDS | 25.0% |
| ! | AAGTTAGTATATGATAGTCT+TGG | + | chr3.4:78295391-78295410 | MS.gene71524:intron | 25.0% |
| ! | ACATAAATATATTGGATCAG+GGG | - | chr3.4:78293833-78293852 | None:intergenic | 25.0% |
| ! | ATCATATACTAACTTATTGC+TGG | - | chr3.4:78295386-78295405 | None:intergenic | 25.0% |
| ! | ATGATTCCAACAATTTAAGA+TGG | - | chr3.4:78296073-78296092 | None:intergenic | 25.0% |
| ! | CACACAAATAGAGTTAAAAA+AGG | - | chr3.4:78295654-78295673 | None:intergenic | 25.0% |
| ! | CCTTAACTCTAATAACATAA+AGG | + | chr3.4:78293399-78293418 | MS.gene71524:intron | 25.0% |
| ! | CCTTTATGTTATTAGAGTTA+AGG | - | chr3.4:78293402-78293421 | None:intergenic | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | + | chr3.4:78293461-78293480 | MS.gene71524:intron | 25.0% |
| ! | CGAAACCAAAAAATAAGTTA+AGG | - | chr3.4:78293480-78293461 | None:intergenic | 25.0% |
| ! | CGAAACCAAAAATTAAGTTA+AGG | - | chr3.4:78293340-78293359 | None:intergenic | 25.0% |
| ! | CTCAAAAGATCTTATAAATG+GGG | - | chr3.4:78293732-78293751 | None:intergenic | 25.0% |
| ! | GAAACATAGATATAATATGG+TGG | - | chr3.4:78296487-78296506 | None:intergenic | 25.0% |
| ! | GAAACTAGTACAAGTATTAT+TGG | - | chr3.4:78296004-78296023 | None:intergenic | 25.0% |
| ! | GAAATAAAATAGGGGTAAAA+GGG | - | chr3.4:78293091-78293110 | None:intergenic | 25.0% |
| ! | GACATAAATATATTGGATCA+GGG | - | chr3.4:78293834-78293853 | None:intergenic | 25.0% |
| ! | GGAGAAGAATAAATATTTGT+AGG | + | chr3.4:78295238-78295257 | MS.gene71524:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | + | chr3.4:78293522-78293541 | MS.gene71524:intron | 25.0% |
| ! | GTAACCAACAAATAACTTAA+GGG | - | chr3.4:78293541-78293522 | None:intergenic | 25.0% |
| ! | GTAATGTAATAAGTAGTAAG+GGG | - | chr3.4:78296598-78296617 | None:intergenic | 25.0% |
| ! | GTTGTATTAACATCTTAGAA+GGG | + | chr3.4:78294207-78294226 | MS.gene71524:intron | 25.0% |
| ! | TAACTAGTTATCTCTCATAA+AGG | + | chr3.4:78293876-78293895 | MS.gene71524:intron | 25.0% |
| ! | TACAAATCATTCAAAGACAA+AGG | - | chr3.4:78295566-78295585 | None:intergenic | 25.0% |
| ! | TCCACTAACCATAATTAATA+AGG | - | chr3.4:78294127-78294146 | None:intergenic | 25.0% |
| ! | TCCTTATTAATTATGGTTAG+TGG | + | chr3.4:78294123-78294142 | MS.gene71524:intron | 25.0% |
| ! | TGAAATAAAATAGGGGTAAA+AGG | - | chr3.4:78293092-78293111 | None:intergenic | 25.0% |
| ! | TGACATAAATATATTGGATC+AGG | - | chr3.4:78293835-78293854 | None:intergenic | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | + | chr3.4:78293521-78293540 | MS.gene71524:intron | 25.0% |
| ! | TGTAACCAACAAATAACTTA+AGG | - | chr3.4:78293540-78293521 | None:intergenic | 25.0% |
| ! | TGTTGTATTAACATCTTAGA+AGG | + | chr3.4:78294206-78294225 | MS.gene71524:intron | 25.0% |
| ! | TTACCGATGAAATAAAATAG+GGG | - | chr3.4:78293099-78293118 | None:intergenic | 25.0% |
| ! | TTATCCTGAAGATATTCAAT+CGG | - | chr3.4:78292719-78292738 | None:intergenic | 25.0% |
| ! | TTGTTTCCATCTTAAATTGT+TGG | + | chr3.4:78296064-78296083 | MS.gene71524:intron | 25.0% |
| !! | AAAAGCCTTATATCTCATTA+AGG | - | chr3.4:78296038-78296057 | None:intergenic | 25.0% |
| !! | AATATACAGAGCATTATGTA+AGG | - | chr3.4:78293164-78293183 | None:intergenic | 25.0% |
| !! | ATATACAGAGCATTATGTAA+GGG | - | chr3.4:78293163-78293182 | None:intergenic | 25.0% |
| !! | ATTTTTGAATTACCATGGTT+TGG | + | chr3.4:78294352-78294371 | MS.gene71524:intron | 25.0% |
| !! | CAGAATGAAATATAATGGAA+TGG | - | chr3.4:78294627-78294646 | None:intergenic | 25.0% |
| !! | GAATGAAATATAATGGAATG+GGG | - | chr3.4:78294625-78294644 | None:intergenic | 25.0% |
| !! | GAGCAAACAATAGATTTTAA+AGG | - | chr3.4:78294423-78294442 | None:intergenic | 25.0% |
| !! | TAATGAGATATAAGGCTTTT+AGG | + | chr3.4:78296038-78296057 | MS.gene71524:intron | 25.0% |
| !! | TAATTTTCCATTCCATTGTT+TGG | - | chr3.4:78294548-78294567 | None:intergenic | 25.0% |
| !! | TTACATTACATTTGAAGCAA+AGG | + | chr3.4:78296609-78296628 | MS.gene71524:CDS | 25.0% |
| !! | TTTTAATACAAGGGTAGAAA+TGG | + | chr3.4:78294485-78294504 | MS.gene71524:intron | 25.0% |
| !! | TTTTCAATTCAAAATGTCTC+AGG | + | chr3.4:78293208-78293227 | MS.gene71524:intron | 25.0% |
| !!! | ATAACATTGAAGTTGATAAC+TGG | - | chr3.4:78294938-78294957 | None:intergenic | 25.0% |
| !!! | CAATTACATAGCTTTACTTT+TGG | + | chr3.4:78293235-78293254 | MS.gene71524:intron | 25.0% |
| !!! | CTTAATTTTTGGTTTCGTTT+TGG | + | chr3.4:78293343-78293362 | MS.gene71524:intron | 25.0% |
| !!! | CTTATTTTTTGGTTTCGTTT+TGG | - | chr3.4:78293393-78293374 | None:intergenic | 25.0% |
| !!! | GTTATTTGTTGGTTACATTT+TGG | + | chr3.4:78293283-78293302 | MS.gene71524:intron | 25.0% |
| !!! | GTTATTTGTTGGTTACATTT+TGG | - | chr3.4:78293302-78293283 | None:intergenic | 25.0% |
| !!! | TTACCCCTATTTTATTTCAT+CGG | + | chr3.4:78293093-78293112 | MS.gene71524:intron | 25.0% |
| !!! | TTCCTAGTCATTTTACTTTT+GGG | + | chr3.4:78295462-78295481 | MS.gene71524:intron | 25.0% |
| AAAGATCTTATAAATGGGGA+TGG | - | chr3.4:78293728-78293747 | None:intergenic | 30.0% | |
| AACAATTCTTCATAATTCGG+TGG | - | chr3.4:78295773-78295792 | None:intergenic | 30.0% | |
| AATAAAGATATCAGCTGAAC+AGG | - | chr3.4:78295812-78295831 | None:intergenic | 30.0% | |
| ACCTGAGACTAAAAAAGTAA+AGG | - | chr3.4:78293626-78293645 | None:intergenic | 30.0% | |
| ATCAAAAATTAGGCTCTGTT+TGG | - | chr3.4:78294675-78294694 | None:intergenic | 30.0% | |
| ATCTCTCATAAAGGTAAACA+TGG | + | chr3.4:78293885-78293904 | MS.gene71524:intron | 30.0% | |
| CAAATAAATTTGGCCATAAC+TGG | + | chr3.4:78294775-78294794 | MS.gene71524:CDS | 30.0% | |
| CAATCAAACAAGTAAGTGAA+TGG | + | chr3.4:78292977-78292996 | MS.gene71524:intron | 30.0% | |
| CATCATAAAGTAACCAAACA+AGG | + | chr3.4:78294576-78294595 | MS.gene71524:intron | 30.0% | |
| CATTCCATTGTTTGGAAATT+GGG | - | chr3.4:78294540-78294559 | None:intergenic | 30.0% | |
| CCACCTTTAGCAAATAAATT+TGG | + | chr3.4:78294765-78294784 | MS.gene71524:CDS | 30.0% | |
| CTGTGCAAGTCATAAATATA+CGG | + | chr3.4:78296125-78296144 | MS.gene71524:intron | 30.0% | |
| GAAAAGGATCATCTTCATAA+CGG | - | chr3.4:78296180-78296199 | None:intergenic | 30.0% | |
| GAGAGCAGAATGAAATATAA+TGG | - | chr3.4:78294632-78294651 | None:intergenic | 30.0% | |
| TAAAGTAACCAAACAAGGAA+TGG | + | chr3.4:78294581-78294600 | MS.gene71524:intron | 30.0% | |
| TAGCAAACATTCAAACACAA+TGG | - | chr3.4:78295609-78295628 | None:intergenic | 30.0% | |
| TCTGACCTTAATGAGATATA+AGG | + | chr3.4:78296030-78296049 | MS.gene71524:intron | 30.0% | |
| TGATATTTGATGGAATGGAT+TGG | + | chr3.4:78292924-78292943 | MS.gene71524:intron | 30.0% | |
| TTCCCAAAAGTAAAATGACT+AGG | - | chr3.4:78295467-78295486 | None:intergenic | 30.0% | |
| TTTGGATTAATGGAACAGAA+CGG | - | chr3.4:78294657-78294676 | None:intergenic | 30.0% | |
| ! | ACGGATAGAGTATTAACTTA+TGG | - | chr3.4:78294023-78294042 | None:intergenic | 30.0% |
| ! | ATTCACGTGTTTTTCTCTAA+AGG | + | chr3.4:78293957-78293976 | MS.gene71524:intron | 30.0% |
| ! | CCAAATTTATTTGCTAAAGG+TGG | - | chr3.4:78294768-78294787 | None:intergenic | 30.0% |
| ! | GATATAAACAGATATTGGCT+TGG | - | chr3.4:78294910-78294929 | None:intergenic | 30.0% |
| ! | GTCATGATTGTATTTTTCCA+GGG | - | chr3.4:78296435-78296454 | None:intergenic | 30.0% |
| ! | GTTATTTGTTGGTTACATCT+TGG | - | chr3.4:78293518-78293537 | None:intergenic | 30.0% |
| ! | TATACAGAGCATTATGTAAG+GGG | - | chr3.4:78293162-78293181 | None:intergenic | 30.0% |
| ! | TATTTGCTAAAGGTGGAATA+GGG | - | chr3.4:78294761-78294780 | None:intergenic | 30.0% |
| ! | TGGCCAAATTTATTTGCTAA+AGG | - | chr3.4:78294771-78294790 | None:intergenic | 30.0% |
| ! | TGGTCCCTTAACTTAATTTT+TGG | + | chr3.4:78293332-78293351 | MS.gene71524:intron | 30.0% |
| ! | TGTCATGATTGTATTTTTCC+AGG | - | chr3.4:78296436-78296455 | None:intergenic | 30.0% |
| ! | TTATTTGCTAAAGGTGGAAT+AGG | - | chr3.4:78294762-78294781 | None:intergenic | 30.0% |
| ! | TTCACGTGTTTTTCTCTAAA+GGG | + | chr3.4:78293958-78293977 | MS.gene71524:intron | 30.0% |
| !! | CTTCCTAGTCATTTTACTTT+TGG | + | chr3.4:78295461-78295480 | MS.gene71524:intron | 30.0% |
| !! | TGTCCTATTTGAGTTTTACA+CGG | + | chr3.4:78294054-78294073 | MS.gene71524:intron | 30.0% |
| !!! | ATCTTGTTCTTGTTTTCTCA+TGG | - | chr3.4:78296241-78296260 | None:intergenic | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | + | chr3.4:78293363-78293382 | MS.gene71524:intron | 30.0% |
| !!! | TGGTCCCTTAACTTATTTTT+TGG | - | chr3.4:78293382-78293363 | None:intergenic | 30.0% |
| AAAGTACAACAAGGACAATC+AGG | + | chr3.4:78294866-78294885 | MS.gene71524:CDS | 35.0% | |
| AAATTGCAGACACGTGAAAA+AGG | - | chr3.4:78296202-78296221 | None:intergenic | 35.0% | |
| AACCCGTGTAAAACTCAAAT+AGG | - | chr3.4:78294060-78294079 | None:intergenic | 35.0% | |
| AAGGATTGAATGGTAAAGGA+TGG | - | chr3.4:78293031-78293050 | None:intergenic | 35.0% | |
| AATAACATAAAGGACCAGAG+TGG | + | chr3.4:78293409-78293428 | MS.gene71524:intron | 35.0% | |
| ACCAAATTCTTACCAAACCA+TGG | - | chr3.4:78294367-78294386 | None:intergenic | 35.0% | |
| CAAAGATTCCATTCCTTGTT+TGG | - | chr3.4:78294592-78294611 | None:intergenic | 35.0% | |
| CCAATTTCCAAACAATGGAA+TGG | + | chr3.4:78294538-78294557 | MS.gene71524:intron | 35.0% | |
| CCATTCCATTGTTTGGAAAT+TGG | - | chr3.4:78294541-78294560 | None:intergenic | 35.0% | |
| CGATCATCTGTTATGTGAAA+CGG | - | chr3.4:78296380-78296399 | None:intergenic | 35.0% | |
| CTTGAAGGATTGAATGGTAA+AGG | - | chr3.4:78293035-78293054 | None:intergenic | 35.0% | |
| CTTGCTAACAAATGTCCTTA+GGG | - | chr3.4:78295979-78295998 | None:intergenic | 35.0% | |
| GAAACCGATTGAATATCTTC+AGG | + | chr3.4:78292712-78292731 | MS.gene71524:CDS | 35.0% | |
| GACAAGAAAATTCAGATCTC+AGG | - | chr3.4:78295860-78295879 | None:intergenic | 35.0% | |
| GACTTTCTTGATCAGAAGTT+GGG | - | chr3.4:78295334-78295353 | None:intergenic | 35.0% | |
| GCCATTAGTCATATTCCTTT+AGG | + | chr3.4:78295013-78295032 | MS.gene71524:CDS | 35.0% | |
| GCCTAAAGGAATATGACTAA+TGG | - | chr3.4:78295017-78295036 | None:intergenic | 35.0% | |
| GTTGAACACATTTAGTAGGA+GGG | - | chr3.4:78293131-78293150 | None:intergenic | 35.0% | |
| TAAAGGGGGTCCTATATTTA+GGG | + | chr3.4:78293974-78293993 | MS.gene71524:intron | 35.0% | |
| TCAATCCTTCAAGTATGCAA+TGG | + | chr3.4:78293042-78293061 | MS.gene71524:intron | 35.0% | |
| TCATTCCATTGCATACTTGA+AGG | - | chr3.4:78293050-78293069 | None:intergenic | 35.0% | |
| TCGTGTTGAACACATTTAGT+AGG | - | chr3.4:78293135-78293154 | None:intergenic | 35.0% | |
| TCTTGCTAACAAATGTCCTT+AGG | - | chr3.4:78295980-78295999 | None:intergenic | 35.0% | |
| TGACTTTCTTGATCAGAAGT+TGG | - | chr3.4:78295335-78295354 | None:intergenic | 35.0% | |
| TGCATACTTGAAGGATTGAA+TGG | - | chr3.4:78293041-78293060 | None:intergenic | 35.0% | |
| TGGAGTGAAATGTAACACAA+TGG | + | chr3.4:78292997-78293016 | MS.gene71524:intron | 35.0% | |
| TGGTCCCTTAAGTTATTTGT+TGG | + | chr3.4:78293272-78293291 | MS.gene71524:intron | 35.0% | |
| TGGTCCCTTAAGTTATTTGT+TGG | - | chr3.4:78293291-78293272 | None:intergenic | 35.0% | |
| TGTTGAACACATTTAGTAGG+AGG | - | chr3.4:78293132-78293151 | None:intergenic | 35.0% | |
| TTAGGCTCTGTTTGGATTAA+TGG | - | chr3.4:78294667-78294686 | None:intergenic | 35.0% | |
| ! | AATAGATAAGGGTATGTCAG+TGG | + | chr3.4:78294170-78294189 | MS.gene71524:intron | 35.0% |
| ! | ACTTTTCGAATGTTACGCTT+GGG | + | chr3.4:78295499-78295518 | MS.gene71524:intron | 35.0% |
| ! | TGAAATATAATGGAATGGGG+CGG | - | chr3.4:78294622-78294641 | None:intergenic | 35.0% |
| ! | TTTTTCTCTCCCTATCTCTT+AGG | + | chr3.4:78292879-78292898 | MS.gene71524:intron | 35.0% |
| !! | ACCATGGTTTGGTAAGAATT+TGG | + | chr3.4:78294363-78294382 | MS.gene71524:intron | 35.0% |
| !! | ATAAACAGATATTGGCTTGG+TGG | - | chr3.4:78294907-78294926 | None:intergenic | 35.0% |
| !! | GTCCTATTTGAGTTTTACAC+GGG | + | chr3.4:78294055-78294074 | MS.gene71524:intron | 35.0% |
| !! | GTGTGTGTGTTAGGTTTTAA+TGG | - | chr3.4:78295164-78295183 | None:intergenic | 35.0% |
| !! | TATTGCTGGTTTGTGCTATT+TGG | - | chr3.4:78295372-78295391 | None:intergenic | 35.0% |
| !! | TCACGTGTTTTTCTCTAAAG+GGG | + | chr3.4:78293959-78293978 | MS.gene71524:intron | 35.0% |
| !! | TGCTTTGGAAAAGTACAACA+AGG | + | chr3.4:78294857-78294876 | MS.gene71524:CDS | 35.0% |
| !! | TGGTTTGGTAAGAATTTGGT+TGG | + | chr3.4:78294367-78294386 | MS.gene71524:intron | 35.0% |
| !! | TTTGAGTTTTACACGGGTTA+AGG | + | chr3.4:78294061-78294080 | MS.gene71524:intron | 35.0% |
| !! | TTTGATGGAATGGATTGGAT+TGG | + | chr3.4:78292929-78292948 | MS.gene71524:intron | 35.0% |
| !!! | GCCTTTACTTTTTTAGTCTC+AGG | + | chr3.4:78293622-78293641 | MS.gene71524:intron | 35.0% |
| AAAAGCGAAGCGGCAAAAAA+CGG | + | chr3.4:78292622-78292641 | MS.gene71524:CDS | 40.0% | |
| AAAGGGGGTCCTATATTTAG+GGG | + | chr3.4:78293975-78293994 | MS.gene71524:intron | 40.0% | |
| AACAAAATGCTTGGGGACAA+TGG | - | chr3.4:78295528-78295547 | None:intergenic | 40.0% | |
| ACAAGAAGAGGCTGAAGAAA+AGG | + | chr3.4:78292811-78292830 | MS.gene71524:CDS | 40.0% | |
| ACGTACACTTATGTTACGAG+CGG | - | chr3.4:78292858-78292877 | None:intergenic | 40.0% | |
| AGAAGACACCTAGTATGAGA+CGG | + | chr3.4:78294261-78294280 | MS.gene71524:intron | 40.0% | |
| AGCCTAAGTCCTAAGAGATA+GGG | - | chr3.4:78292891-78292910 | None:intergenic | 40.0% | |
| AGTTGGAAGGATGAACATGA+TGG | - | chr3.4:78296645-78296664 | None:intergenic | 40.0% | |
| ATAGGACAACTACAGTGAGA+CGG | - | chr3.4:78294042-78294061 | None:intergenic | 40.0% | |
| ATCGGATTCGGAATCTGATT+CGG | + | chr3.4:78292658-78292677 | MS.gene71524:CDS | 40.0% | |
| ATCTGTTATGTGAAACGGTC+TGG | - | chr3.4:78296375-78296394 | None:intergenic | 40.0% | |
| CAGACACGTGAAAAAGGAAA+AGG | - | chr3.4:78296196-78296215 | None:intergenic | 40.0% | |
| CCAACCTTAGCAAATGTATG+TGG | + | chr3.4:78296338-78296357 | MS.gene71524:CDS | 40.0% | |
| CTAAAGGGGGTCCTATATTT+AGG | + | chr3.4:78293973-78293992 | MS.gene71524:intron | 40.0% | |
| CTTAGGACTTAGGCTATGTT+TGG | + | chr3.4:78292896-78292915 | MS.gene71524:intron | 40.0% | |
| GAAAGTAATAGCAGGGAAGT+TGG | - | chr3.4:78296662-78296681 | None:intergenic | 40.0% | |
| GAATTGGATACAGTGTTGCA+CGG | + | chr3.4:78292566-78292585 | MS.gene71524:CDS | 40.0% | |
| GATCTTATAAATGGGGATGG+AGG | - | chr3.4:78293725-78293744 | None:intergenic | 40.0% | |
| GGAATAGGGATAGCATCAAA+GGG | - | chr3.4:78294747-78294766 | None:intergenic | 40.0% | |
| GTAATGTAGTAGCTGCCTAA+AGG | - | chr3.4:78295031-78295050 | None:intergenic | 40.0% | |
| GTTGGAAGGATGAACATGAT+GGG | - | chr3.4:78296644-78296663 | None:intergenic | 40.0% | |
| TAGCCTAAGTCCTAAGAGAT+AGG | - | chr3.4:78292892-78292911 | None:intergenic | 40.0% | |
| TATCCTTAACAAGTGCCCTA+AGG | + | chr3.4:78295961-78295980 | MS.gene71524:intron | 40.0% | |
| TCCACCCAATTTCCAAACAA+TGG | + | chr3.4:78294533-78294552 | MS.gene71524:intron | 40.0% | |
| TCCATTGTTTGGAAATTGGG+TGG | - | chr3.4:78294537-78294556 | None:intergenic | 40.0% | |
| TCTGTTATGTGAAACGGTCT+GGG | - | chr3.4:78296374-78296393 | None:intergenic | 40.0% | |
| TGGAATAGGGATAGCATCAA+AGG | - | chr3.4:78294748-78294767 | None:intergenic | 40.0% | |
| TGTTTGGAAATTGGGTGGAA+CGG | - | chr3.4:78294532-78294551 | None:intergenic | 40.0% | |
| TTGGAAGGATGAACATCTTC+TGG | - | chr3.4:78295073-78295092 | None:intergenic | 40.0% | |
| ! | ACATTTGCTAAGGTTGGAAC+AGG | - | chr3.4:78296335-78296354 | None:intergenic | 40.0% |
| ! | ACGAAAAATAGCGGGGAATA+GGG | - | chr3.4:78292754-78292773 | None:intergenic | 40.0% |
| ! | ATATTGGATCAGGGGTATAG+TGG | - | chr3.4:78293825-78293844 | None:intergenic | 40.0% |
| ! | CACTTTTCGAATGTTACGCT+TGG | + | chr3.4:78295498-78295517 | MS.gene71524:intron | 40.0% |
| ! | CATTTGCTAAGGTTGGAACA+GGG | - | chr3.4:78296334-78296353 | None:intergenic | 40.0% |
| ! | CCACATACATTTGCTAAGGT+TGG | - | chr3.4:78296341-78296360 | None:intergenic | 40.0% |
| ! | GGGTTTGAAGTACGAGTTTA+AGG | + | chr3.4:78294976-78294995 | MS.gene71524:intron | 40.0% |
| ! | GTACTTTTCCAAAGCACACT+TGG | - | chr3.4:78294853-78294872 | None:intergenic | 40.0% |
| ! | GTATTTTTCCAGGGCAAGTT+TGG | - | chr3.4:78296426-78296445 | None:intergenic | 40.0% |
| ! | GTTGCCACATACATTTGCTA+AGG | - | chr3.4:78296345-78296364 | None:intergenic | 40.0% |
| ! | TCTTCATAATTCGGTGGTAG+CGG | - | chr3.4:78295767-78295786 | None:intergenic | 40.0% |
| !! | CACGTGTTTTTCTCTAAAGG+GGG | + | chr3.4:78293960-78293979 | MS.gene71524:intron | 40.0% |
| !! | TGGAATGGATTGGATTGGAT+TGG | + | chr3.4:78292934-78292953 | MS.gene71524:intron | 40.0% |
| !!! | GGATGAACATCTTCTGGTTT+TGG | - | chr3.4:78295067-78295086 | None:intergenic | 40.0% |
| !!! | TGGTTTTGGTGTTGCTTTGA+AGG | - | chr3.4:78295053-78295072 | None:intergenic | 40.0% |
| AACGGAACCAGAACCAGAAT+CGG | + | chr3.4:78292640-78292659 | MS.gene71524:CDS | 45.0% | |
| ACAATGGATGCATACTACGC+AGG | - | chr3.4:78295593-78295612 | None:intergenic | 45.0% | |
| ACCAGAACCAGAATCGGATT+CGG | + | chr3.4:78292646-78292665 | MS.gene71524:CDS | 45.0% | |
| ACCTTGTCAAGGCAACTAAG+AGG | + | chr3.4:78296566-78296585 | MS.gene71524:CDS | 45.0% | |
| AGCGCGTACACGAAAAATAG+CGG | - | chr3.4:78292763-78292782 | None:intergenic | 45.0% | |
| AGTCGTGAGAGAACAAGAAG+AGG | + | chr3.4:78292799-78292818 | MS.gene71524:CDS | 45.0% | |
| ATCGTCTATAGGAACAGGTC+TGG | - | chr3.4:78294802-78294821 | None:intergenic | 45.0% | |
| ATGGAACACGACTTGATCAC+AGG | - | chr3.4:78295145-78295164 | None:intergenic | 45.0% | |
| CGAGTTTAAGGAGCTTGTCA+AGG | + | chr3.4:78294988-78295007 | MS.gene71524:CDS | 45.0% | |
| CTCCCTATCTCTTAGGACTT+AGG | + | chr3.4:78292886-78292905 | MS.gene71524:intron | 45.0% | |
| CTTCCCTGCTATTACTTTCC+TGG | + | chr3.4:78296663-78296682 | MS.gene71524:CDS | 45.0% | |
| GAAAGTGGTAGCAGACATGT+TGG | - | chr3.4:78295092-78295111 | None:intergenic | 45.0% | |
| GATACCCAGTCCCAATCAAT+TGG | - | chr3.4:78292692-78292711 | None:intergenic | 45.0% | |
| GGAACCAATTGATTGGGACT+GGG | + | chr3.4:78292685-78292704 | MS.gene71524:CDS | 45.0% | |
| GGAACCGGAACCAATTGATT+GGG | + | chr3.4:78292679-78292698 | MS.gene71524:CDS | 45.0% | |
| GGATTAATGGAACAGAACGG+AGG | - | chr3.4:78294654-78294673 | None:intergenic | 45.0% | |
| GGTCTTCAAATACTCAGCGA+CGG | - | chr3.4:78292837-78292856 | None:intergenic | 45.0% | |
| GTAATAGCAGGGAAGTTGGA+AGG | - | chr3.4:78296658-78296677 | None:intergenic | 45.0% | |
| GTACCTCTGCCCCTAAATAT+AGG | - | chr3.4:78293987-78294006 | None:intergenic | 45.0% | |
| TAAAGGACCAGAGTGGTTGA+CGG | + | chr3.4:78293416-78293435 | MS.gene71524:intron | 45.0% | |
| TCAGATTCCGAATCCGATTC+TGG | - | chr3.4:78292656-78292675 | None:intergenic | 45.0% | |
| TCGTCTATAGGAACAGGTCT+GGG | - | chr3.4:78294801-78294820 | None:intergenic | 45.0% | |
| TCGTGATCGTCTATAGGAAC+AGG | - | chr3.4:78294807-78294826 | None:intergenic | 45.0% | |
| TTGGAGAGTCGAATGAGAAG+TGG | - | chr3.4:78294834-78294853 | None:intergenic | 45.0% | |
| ! | CACGAAAAATAGCGGGGAAT+AGG | - | chr3.4:78292755-78292774 | None:intergenic | 45.0% |
| ! | CAGTCCCAATCAATTGGTTC+CGG | - | chr3.4:78292686-78292705 | None:intergenic | 45.0% |
| ! | TATAATGGAATGGGGCGGAA+TGG | - | chr3.4:78294617-78294636 | None:intergenic | 45.0% |
| ! | TGTCCTTAGGGCACTTGTTA+AGG | - | chr3.4:78295967-78295986 | None:intergenic | 45.0% |
| !! | TTCGGAATCTGATTCGGAAC+CGG | + | chr3.4:78292664-78292683 | MS.gene71524:CDS | 45.0% |
| AGACACCTAGTATGAGACGG+AGG | + | chr3.4:78294264-78294283 | MS.gene71524:intron | 50.0% | |
| CACGACTTGATCACAGGTTC+AGG | - | chr3.4:78295139-78295158 | None:intergenic | 50.0% | |
| CCATGGTGTGTGTGTGTGTT+AGG | - | chr3.4:78295173-78295192 | None:intergenic | 50.0% | |
| CCTAACACACACACACACCA+TGG | + | chr3.4:78295170-78295189 | MS.gene71524:intron | 50.0% | |
| CGCGTACACGAAAAATAGCG+GGG | - | chr3.4:78292761-78292780 | None:intergenic | 50.0% | |
| CGGAACCAATTGATTGGGAC+TGG | + | chr3.4:78292684-78292703 | MS.gene71524:CDS | 50.0% | |
| CGGAACCGGAACCAATTGAT+TGG | + | chr3.4:78292678-78292697 | MS.gene71524:CDS | 50.0% | |
| GACACCTAGTATGAGACGGA+GGG | + | chr3.4:78294265-78294284 | MS.gene71524:intron | 50.0% | |
| GCCTCTTAGTTGCCTTGACA+AGG | - | chr3.4:78296570-78296589 | None:intergenic | 50.0% | |
| GCGCGTACACGAAAAATAGC+GGG | - | chr3.4:78292762-78292781 | None:intergenic | 50.0% | |
| GGGCCAGGAAAGTAATAGCA+GGG | - | chr3.4:78296669-78296688 | None:intergenic | 50.0% | |
| GGTCCTATATTTAGGGGCAG+AGG | + | chr3.4:78293981-78294000 | MS.gene71524:intron | 50.0% | |
| GGTTGACGGAGGAAGAGTTA+AGG | + | chr3.4:78293430-78293449 | MS.gene71524:intron | 50.0% | |
| GTGGTAGCAGACATGTTGGA+AGG | - | chr3.4:78295088-78295107 | None:intergenic | 50.0% | |
| TACTCCCTCCGTCTCATACT+AGG | - | chr3.4:78294272-78294291 | None:intergenic | 50.0% | |
| TCGACTCTCCAAGTGTGCTT+TGG | + | chr3.4:78294842-78294861 | MS.gene71524:CDS | 50.0% | |
| TGGGCCAGGAAAGTAATAGC+AGG | - | chr3.4:78296670-78296689 | None:intergenic | 50.0% | |
| TTTCCAGGGCAAGTTTGGAG+AGG | - | chr3.4:78296421-78296440 | None:intergenic | 50.0% | |
| ! | GGAACAGGGATAGCATCGAA+GGG | - | chr3.4:78296320-78296339 | None:intergenic | 50.0% |
| ! | TGGAACAGGGATAGCATCGA+AGG | - | chr3.4:78296321-78296340 | None:intergenic | 50.0% |
| ! | TTTTCCTCGCAGCTTTCCAG+AGG | - | chr3.4:78292605-78292624 | None:intergenic | 50.0% |
| !! | TCCGAATCCGATTCTGGTTC+TGG | - | chr3.4:78292650-78292669 | None:intergenic | 50.0% |
| ACAGACGTGGGTCTGGAAAG+TGG | - | chr3.4:78295107-78295126 | None:intergenic | 55.0% | |
| AGACCCACGTCTGTGACTGT+AGG | + | chr3.4:78295113-78295132 | MS.gene71524:intron | 55.0% | |
| AGGCCTACAGTCACAGACGT+GGG | - | chr3.4:78295119-78295138 | None:intergenic | 55.0% | |
| GAACAGGTCTGGGCCAGTTA+TGG | - | chr3.4:78294791-78294810 | None:intergenic | 55.0% | |
| GCTGCGAGGAAAAAGCGAAG+CGG | + | chr3.4:78292612-78292631 | MS.gene71524:CDS | 55.0% | |
| GGCTGCTCGTGATCGTCTAT+AGG | - | chr3.4:78294813-78294832 | None:intergenic | 55.0% | |
| TACAGTCACAGACGTGGGTC+TGG | - | chr3.4:78295114-78295133 | None:intergenic | 55.0% | |
| TCTTCCTCCGTCAACCACTC+TGG | - | chr3.4:78293426-78293445 | None:intergenic | 55.0% | |
| TGACCTCTCCAAACTTGCCC+TGG | + | chr3.4:78296415-78296434 | MS.gene71524:CDS | 55.0% | |
| AGGACCAGAGTGGTTGACGG+AGG | + | chr3.4:78293419-78293438 | MS.gene71524:intron | 60.0% | |
| CAGGCCTACAGTCACAGACG+TGG | - | chr3.4:78295120-78295139 | None:intergenic | 60.0% | |
| CGCAGCTTTCCAGAGGAGGT+GGG | - | chr3.4:78292598-78292617 | None:intergenic | 60.0% | |
| GCAGCTTTCCAGAGGAGGTG+GGG | - | chr3.4:78292597-78292616 | None:intergenic | 60.0% | |
| TCCTCGCAGCTTTCCAGAGG+AGG | - | chr3.4:78292602-78292621 | None:intergenic | 60.0% | |
| TCGCAGCTTTCCAGAGGAGG+TGG | - | chr3.4:78292599-78292618 | None:intergenic | 60.0% | |
| ! | ACCTCCTCTGGAAAGCTGCG+AGG | + | chr3.4:78292598-78292617 | MS.gene71524:CDS | 60.0% |
| CGGCGTCACCCCACCTCCTC+TGG | + | chr3.4:78292586-78292605 | MS.gene71524:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 78292557 | 78296696 | 78292557 | ID=MS.gene71524 |
| chr3.4 | mRNA | 78292557 | 78296696 | 78292557 | ID=MS.gene71524.t1;Parent=MS.gene71524 |
| chr3.4 | exon | 78292557 | 78292871 | 78292557 | ID=MS.gene71524.t1.exon1;Parent=MS.gene71524.t1 |
| chr3.4 | CDS | 78292557 | 78292871 | 78292557 | ID=cds.MS.gene71524.t1;Parent=MS.gene71524.t1 |
| chr3.4 | exon | 78294744 | 78294887 | 78294744 | ID=MS.gene71524.t1.exon2;Parent=MS.gene71524.t1 |
| chr3.4 | CDS | 78294744 | 78294887 | 78294744 | ID=cds.MS.gene71524.t1;Parent=MS.gene71524.t1 |
| chr3.4 | exon | 78294977 | 78295120 | 78294977 | ID=MS.gene71524.t1.exon3;Parent=MS.gene71524.t1 |
| chr3.4 | CDS | 78294977 | 78295120 | 78294977 | ID=cds.MS.gene71524.t1;Parent=MS.gene71524.t1 |
| chr3.4 | exon | 78296317 | 78296460 | 78296317 | ID=MS.gene71524.t1.exon4;Parent=MS.gene71524.t1 |
| chr3.4 | CDS | 78296317 | 78296460 | 78296317 | ID=cds.MS.gene71524.t1;Parent=MS.gene71524.t1 |
| chr3.4 | exon | 78296544 | 78296696 | 78296544 | ID=MS.gene71524.t1.exon5;Parent=MS.gene71524.t1 |
| chr3.4 | CDS | 78296544 | 78296696 | 78296544 | ID=cds.MS.gene71524.t1;Parent=MS.gene71524.t1 |
| Gene Sequence |
| Protein sequence |
