Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77464.t1 | AES71816.1 | 56.2 | 258 | 12 | 1 | 80 | 337 | 49 | 205 | 5.80E-65 | 258.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77464.t1 | G7J9H7 | 56.2 | 258 | 12 | 1 | 80 | 337 | 49 | 205 | 4.2e-65 | 258.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77464.t1 | MTR_3g083080 | 68.398 | 231 | 40 | 3 | 1 | 231 | 1 | 198 | 5.66e-105 | 306 |
| MS.gene77464.t1 | MTR_3g083080 | 93.396 | 106 | 7 | 0 | 232 | 337 | 100 | 205 | 5.13e-67 | 209 |
| MS.gene77464.t1 | MTR_3g083030 | 65.086 | 232 | 69 | 4 | 1 | 231 | 1 | 221 | 5.04e-98 | 290 |
| MS.gene77464.t1 | MTR_3g083030 | 60.748 | 107 | 39 | 2 | 233 | 338 | 126 | 230 | 3.39e-33 | 123 |
| MS.gene77464.t1 | MTR_3g083050 | 51.293 | 232 | 78 | 4 | 1 | 231 | 1 | 198 | 4.96e-67 | 209 |
| MS.gene77464.t1 | MTR_3g083050 | 60.748 | 107 | 39 | 2 | 233 | 338 | 103 | 207 | 4.81e-33 | 122 |
| MS.gene77464.t1 | MTR_3g082340 | 35.622 | 233 | 116 | 8 | 1 | 224 | 1 | 208 | 9.98e-32 | 119 |
| MS.gene77464.t1 | MTR_3g082420 | 38.426 | 216 | 110 | 9 | 17 | 224 | 7 | 207 | 3.16e-30 | 115 |
| MS.gene77464.t1 | MTR_3g086030 | 49.074 | 108 | 47 | 1 | 54 | 161 | 4 | 103 | 3.66e-24 | 97.1 |
| MS.gene77464.t1 | MTR_3g083150 | 34.188 | 234 | 118 | 6 | 1 | 229 | 1 | 203 | 4.86e-21 | 90.1 |
| MS.gene77464.t1 | MTR_3g083150 | 44.737 | 114 | 55 | 5 | 232 | 338 | 100 | 212 | 2.26e-13 | 68.6 |
| MS.gene77464.t1 | MTR_3g083100 | 46.667 | 120 | 51 | 4 | 230 | 338 | 57 | 174 | 2.13e-17 | 79.0 |
| MS.gene77464.t1 | MTR_3g083100 | 50.000 | 68 | 32 | 1 | 160 | 225 | 86 | 153 | 7.59e-14 | 69.3 |
| MS.gene77464.t1 | MTR_3g080680 | 34.000 | 200 | 109 | 9 | 39 | 230 | 6 | 190 | 1.23e-15 | 74.7 |
| MS.gene77464.t1 | MTR_4g055800 | 32.308 | 195 | 106 | 6 | 27 | 209 | 85 | 265 | 1.07e-14 | 73.9 |
| MS.gene77464.t1 | MTR_8g461300 | 34.940 | 166 | 83 | 10 | 83 | 231 | 34 | 191 | 3.09e-12 | 65.1 |
| MS.gene77464.t1 | MTR_8g461300 | 39.831 | 118 | 54 | 7 | 233 | 337 | 85 | 198 | 2.32e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 85 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATTCCGGTTCGGATTTC+AGG | 0.202617 | 3.2:-71930932 | None:intergenic |
| CAGGCCTCCTGTCCCATACT+TGG | 0.214136 | 3.2:-71931701 | None:intergenic |
| CGCCCACACATAAACATAAA+AGG | 0.266595 | 3.2:-71931131 | None:intergenic |
| TTCAGTTCCGGTGGCAATTC+CGG | 0.272860 | 3.2:-71930981 | None:intergenic |
| CAAGTATGGGACAGGAGGCC+TGG | 0.285262 | 3.2:+71931702 | MS.gene77464:CDS |
| TCATATTTCTCTCGCCGTTT+CGG | 0.296681 | 3.2:-71931041 | None:intergenic |
| TCCGGTTCCGACTTCAGTTC+GGG | 0.301504 | 3.2:-71930963 | None:intergenic |
| TCGGGTTCAGGTTGCAATTC+CGG | 0.306399 | 3.2:-71930945 | None:intergenic |
| TCCGACTTCAGTTCGGGTTC+AGG | 0.333407 | 3.2:-71930957 | None:intergenic |
| TTCGGCTGCGACTTCAGTTC+CGG | 0.363626 | 3.2:-71931023 | None:intergenic |
| GCGATTTACGTACAAGAATA+AGG | 0.366136 | 3.2:+71931151 | MS.gene77464:CDS |
| TCCGGTTCCAACTTCAGTTC+CGG | 0.379777 | 3.2:-71930993 | None:intergenic |
| TTCCGGTTCCGACTTCAGTT+CGG | 0.385258 | 3.2:-71930964 | None:intergenic |
| TGCAGAGGGGAGTGAGTCTA+AGG | 0.391841 | 3.2:-71933652 | None:intergenic |
| TCGCCAGGGCTAAGCATAGA+AGG | 0.414237 | 3.2:+71931204 | MS.gene77464:CDS |
| TCCTGTCCCATACTTGGGCC+TGG | 0.435293 | 3.2:-71931695 | None:intergenic |
| TCTTGTTCCGTACTTGTGCC+TGG | 0.436222 | 3.2:-71933919 | None:intergenic |
| AGATCTTCTGTTAAGCTGAT+AGG | 0.442837 | 3.2:-71933626 | None:intergenic |
| TTCAGGTTGCAATTCCGGTT+CGG | 0.449691 | 3.2:-71930940 | None:intergenic |
| GAATCACATACATGTTTGTT+CGG | 0.450921 | 3.2:+71930864 | MS.gene77464:CDS |
| AAGTATGGGACAGGAGGCCT+GGG | 0.453171 | 3.2:+71931703 | MS.gene77464:CDS |
| ACCCGAACTGAAGTCGGAAC+CGG | 0.459886 | 3.2:+71930962 | MS.gene77464:CDS |
| GAGTTCAAGGCGAAGATCAT+TGG | 0.466501 | 3.2:-71931409 | None:intergenic |
| TTCAGTTCCGGTGCTAACTC+CGG | 0.468654 | 3.2:-71931011 | None:intergenic |
| CAGGAGGCCTGGGCCACCTG+TGG | 0.469194 | 3.2:+71931713 | MS.gene77464:CDS |
| AGGCCTCCTGTCCCATACTT+GGG | 0.473912 | 3.2:-71931700 | None:intergenic |
| GACTTGACCACAGGTGGCCC+AGG | 0.480427 | 3.2:-71931720 | None:intergenic |
| AAGTACGGAACAAGAGGCTT+GGG | 0.481160 | 3.2:+71933927 | MS.gene77464:CDS |
| TGCAGAGGGGAGTGAGTTCA+AGG | 0.488921 | 3.2:-71931422 | None:intergenic |
| ACCGGAACTGAAGTTGGAAC+CGG | 0.489325 | 3.2:+71930992 | MS.gene77464:CDS |
| TCCAGGCCCAAGTATGGGAC+AGG | 0.489866 | 3.2:+71931694 | MS.gene77464:CDS |
| GGCTCAGATTCAACAAGATA+AGG | 0.491800 | 3.2:+71931172 | MS.gene77464:CDS |
| GAAAATTATAGCAGGGCTGT+TGG | 0.493991 | 3.2:-71931673 | None:intergenic |
| GAAAATTATAGCAGGGCTGT+TGG | 0.493991 | 3.2:-71933897 | None:intergenic |
| ATAAGGATATTAGAATCGCC+AGG | 0.505840 | 3.2:+71931189 | MS.gene77464:CDS |
| CAAGTACGGAACAAGAGGCT+TGG | 0.516339 | 3.2:+71933926 | MS.gene77464:CDS |
| TCATCGCAGCAATCCGTGGC+AGG | 0.518220 | 3.2:-71930897 | None:intergenic |
| ATTGCCACCGGAACTGAAGT+TGG | 0.518984 | 3.2:+71930986 | MS.gene77464:CDS |
| AACTGAAGTCGCAGCCGAAA+CGG | 0.523556 | 3.2:+71931027 | MS.gene77464:CDS |
| TGGGCCTGGAAAATTATAGC+AGG | 0.523864 | 3.2:-71931681 | None:intergenic |
| TGTGCCTGGAAAATTATAGC+AGG | 0.526873 | 3.2:-71933905 | None:intergenic |
| CAAGTACAATGCTGAGAACC+AGG | 0.527031 | 3.2:+71931458 | MS.gene77464:CDS |
| CAAGTACAATGCTGAGAACC+AGG | 0.527031 | 3.2:+71933688 | MS.gene77464:CDS |
| ATACGTATGACCAGGTCTCC+AGG | 0.532099 | 3.2:-71933837 | None:intergenic |
| AACGGCGAGAGAAATATGAA+TGG | 0.532868 | 3.2:+71931045 | MS.gene77464:CDS |
| GCGCCTTCTATGCTTAGCCC+TGG | 0.537473 | 3.2:-71931207 | None:intergenic |
| AAGATCATTGGTTAAGTCGA+TGG | 0.537635 | 3.2:-71931397 | None:intergenic |
| GTGAAGACAACCTGGAGACC+TGG | 0.543016 | 3.2:+71933827 | MS.gene77464:CDS |
| ACGGCGAGAGAAATATGAAT+GGG | 0.545074 | 3.2:+71931046 | MS.gene77464:CDS |
| TTCTTGTTTCTGTGCTTGAA+AGG | 0.546292 | 3.2:-71933867 | None:intergenic |
| CTGACATTGTGAAGACAACC+TGG | 0.546641 | 3.2:+71931589 | MS.gene77464:CDS |
| CTGACATTGTGAAGACAACC+TGG | 0.547939 | 3.2:+71933819 | MS.gene77464:CDS |
| GAAGTGCCTGAAATCCGAAC+CGG | 0.551355 | 3.2:+71930926 | MS.gene77464:CDS |
| CGGCGTCATCCGACCTGCCA+CGG | 0.552704 | 3.2:+71930884 | MS.gene77464:CDS |
| GTGAAGACAACCTGGAGACC+TGG | 0.554795 | 3.2:+71931597 | MS.gene77464:CDS |
| ATACATACGACCAGGTCTCC+AGG | 0.556794 | 3.2:-71931607 | None:intergenic |
| GTCTAATGCAAACTTGCAGA+GGG | 0.557076 | 3.2:-71931436 | None:intergenic |
| ATGGCACACGACTTGACCAC+AGG | 0.557195 | 3.2:-71933953 | None:intergenic |
| ACGGATTGCTGCGATGAAAG+AGG | 0.563989 | 3.2:+71930903 | MS.gene77464:CDS |
| CGGATTGCTGCGATGAAAGA+GGG | 0.569780 | 3.2:+71930904 | MS.gene77464:CDS |
| GTCTAACGCAAACTTGCAGA+GGG | 0.574230 | 3.2:-71933666 | None:intergenic |
| ACCTGAACCCGAACTGAAGT+CGG | 0.580010 | 3.2:+71930956 | MS.gene77464:CDS |
| ATTATAGCAGGGCTGTTGGA+AGG | 0.580406 | 3.2:-71931669 | None:intergenic |
| ATTATAGCAGGGCTGTTGGA+AGG | 0.580406 | 3.2:-71933893 | None:intergenic |
| CGCAGCAATCCGTGGCAGGT+CGG | 0.581919 | 3.2:-71930893 | None:intergenic |
| AGATCATTGGTTAAGTCGAT+GGG | 0.582159 | 3.2:-71931396 | None:intergenic |
| GGAGGAGTGATGGCATCGAA+AGG | 0.589477 | 3.2:-71933572 | None:intergenic |
| GTCGGAACCGGAATTGCCAC+CGG | 0.601982 | 3.2:+71930974 | MS.gene77464:CDS |
| TGTCTAATGCAAACTTGCAG+AGG | 0.606673 | 3.2:-71931437 | None:intergenic |
| AGGCACAAGTACGGAACAAG+AGG | 0.609707 | 3.2:+71933921 | MS.gene77464:CDS |
| TCTTTCATCGCAGCAATCCG+TGG | 0.614163 | 3.2:-71930901 | None:intergenic |
| GTTGGAACCGGAGTTAGCAC+CGG | 0.614360 | 3.2:+71931004 | MS.gene77464:CDS |
| GGTTCCAACTTCAGTTCCGG+TGG | 0.621297 | 3.2:-71930990 | None:intergenic |
| AGGCCCAAGTATGGGACAGG+AGG | 0.621879 | 3.2:+71931697 | MS.gene77464:CDS |
| CAAGAGGCTTGGGCCACCTG+TGG | 0.623165 | 3.2:+71933937 | MS.gene77464:CDS |
| TGTCTAACGCAAACTTGCAG+AGG | 0.623827 | 3.2:-71933667 | None:intergenic |
| GTGCCTGGAAAATTATAGCA+GGG | 0.642603 | 3.2:-71933904 | None:intergenic |
| GGGCCTGGAAAATTATAGCA+GGG | 0.644489 | 3.2:-71931680 | None:intergenic |
| GCACACGACTTGACCACAGG+TGG | 0.646887 | 3.2:-71931726 | None:intergenic |
| GCACACGACTTGACCACAGG+TGG | 0.646887 | 3.2:-71933950 | None:intergenic |
| TAAGGATATTAGAATCGCCA+GGG | 0.647318 | 3.2:+71931190 | MS.gene77464:CDS |
| GTAATGTAATACGTATGACC+AGG | 0.669250 | 3.2:-71933845 | None:intergenic |
| GTAATGTAATACATACGACC+AGG | 0.698620 | 3.2:-71931615 | None:intergenic |
| TCTAATGCAAACTTGCAGAG+GGG | 0.755777 | 3.2:-71931435 | None:intergenic |
| TCTAACGCAAACTTGCAGAG+GGG | 0.780492 | 3.2:-71933665 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATCATATTTTTTTAAGA+AGG | + | chr3.2:71933085-71933104 | MS.gene77464:intron | 10.0% |
| !! | AAAATGTTGTACTAAAAAAA+TGG | + | chr3.2:71933168-71933187 | MS.gene77464:intron | 15.0% |
| !! | AAATTAAATACAGTATCAAT+TGG | - | chr3.2:71932242-71932261 | None:intergenic | 15.0% |
| !! | AGATTAAAATACAATTTCAA+AGG | - | chr3.2:71931898-71931917 | None:intergenic | 15.0% |
| !! | ATTAAAATACAATTTCAAAG+GGG | - | chr3.2:71931896-71931915 | None:intergenic | 15.0% |
| !! | GATTAAAATACAATTTCAAA+GGG | - | chr3.2:71931897-71931916 | None:intergenic | 15.0% |
| !!! | ATTCATTTTATTTTTCTACA+TGG | + | chr3.2:71932826-71932845 | MS.gene77464:intron | 15.0% |
| !!! | ATTGATACTGTATTTAATTT+TGG | + | chr3.2:71932242-71932261 | MS.gene77464:intron | 15.0% |
| !!! | GAAGTTTATTTTAAAGAAAA+GGG | - | chr3.2:71932134-71932153 | None:intergenic | 15.0% |
| !!! | TCTTTAAAATAAACTTCAAT+TGG | + | chr3.2:71932137-71932156 | MS.gene77464:intron | 15.0% |
| !!! | TGAAGTTTATTTTAAAGAAA+AGG | - | chr3.2:71932135-71932154 | None:intergenic | 15.0% |
| !! | AAAAAATAAAAATAGACGGA+AGG | + | chr3.2:71932909-71932928 | MS.gene77464:intron | 20.0% |
| !! | AACTATTAACATTATTACCA+TGG | - | chr3.2:71932212-71932231 | None:intergenic | 20.0% |
| !!! | AAATGTAGATTTGCATTTTT+TGG | - | chr3.2:71933596-71933615 | None:intergenic | 20.0% |
| !!! | ACTAATTTTTCTCATGATTT+AGG | + | chr3.2:71931548-71931567 | MS.gene77464:intron | 20.0% |
| !!! | CAACATGTTTAATCTTTTTT+TGG | + | chr3.2:71931843-71931862 | MS.gene77464:intron | 20.0% |
| !!! | GCAGTTTATTTTAAAGAAAA+GGG | - | chr3.2:71932525-71932544 | None:intergenic | 20.0% |
| !!! | GGTTTTGTGAAATTTATTAA+AGG | + | chr3.2:71932704-71932723 | MS.gene77464:intron | 20.0% |
| !!! | TGCAGTTTATTTTAAAGAAA+AGG | - | chr3.2:71932526-71932545 | None:intergenic | 20.0% |
| ! | AAGATCTTGAGAAATATGAA+TGG | + | chr3.2:71933273-71933292 | MS.gene77464:intron | 25.0% |
| ! | AGATCTTGAGAAATATGAAT+GGG | + | chr3.2:71933274-71933293 | MS.gene77464:intron | 25.0% |
| ! | ATGTGGACATAAATATCATT+CGG | + | chr3.2:71932020-71932039 | MS.gene77464:intron | 25.0% |
| ! | ATTAACATTATTACCATGGT+GGG | - | chr3.2:71932208-71932227 | None:intergenic | 25.0% |
| ! | GATATCTTCATTCAAAACAA+TGG | + | chr3.2:71933033-71933052 | MS.gene77464:intron | 25.0% |
| ! | GTTCAAAATAGTGAATTTCA+TGG | - | chr3.2:71931958-71931977 | None:intergenic | 25.0% |
| ! | TATTAACATTATTACCATGG+TGG | - | chr3.2:71932209-71932228 | None:intergenic | 25.0% |
| ! | TTATTGTAATTTAAGGAACC+TGG | - | chr3.2:71933709-71933728 | None:intergenic | 25.0% |
| ! | TTCTTGTAATTTATTGAACC+TGG | - | chr3.2:71931479-71931498 | None:intergenic | 25.0% |
| !! | ACTAATTTTTGTCCTGATTT+AGG | + | chr3.2:71933778-71933797 | MS.gene77464:intron | 25.0% |
| !! | CTAATTTTTGTCCTGATTTA+GGG | + | chr3.2:71933779-71933798 | MS.gene77464:intron | 25.0% |
| !! | TAGATAGATGTTTTACAGAT+AGG | - | chr3.2:71933469-71933488 | None:intergenic | 25.0% |
| !!! | GTTTTGAATGAAGATATCAT+AGG | - | chr3.2:71933031-71933050 | None:intergenic | 25.0% |
| AACAATGGACACATTATTGT+TGG | + | chr3.2:71933048-71933067 | MS.gene77464:intron | 30.0% | |
| AGAAACTAGATTAGAGTATG+TGG | + | chr3.2:71932003-71932022 | MS.gene77464:intron | 30.0% | |
| ATTTCACAAAACCACATACA+TGG | - | chr3.2:71932697-71932716 | None:intergenic | 30.0% | |
| CAAAATAGTGAATTTCATGG+AGG | - | chr3.2:71931955-71931974 | None:intergenic | 30.0% | |
| CATAACAGTGTAATTCATGA+AGG | - | chr3.2:71932302-71932321 | None:intergenic | 30.0% | |
| CATGAAGGAAAACAAAAAAC+TGG | - | chr3.2:71932287-71932306 | None:intergenic | 30.0% | |
| CTTATCTGTGTTAATGCATT+CGG | - | chr3.2:71932549-71932568 | None:intergenic | 30.0% | |
| CTTCATGAATTACACTGTTA+TGG | + | chr3.2:71932300-71932319 | MS.gene77464:intron | 30.0% | |
| GAAATTCAAGCGACATAATT+TGG | + | chr3.2:71932671-71932690 | MS.gene77464:intron | 30.0% | |
| GAACTATTGAAATTAGCAAG+CGG | + | chr3.2:71931974-71931993 | MS.gene77464:intron | 30.0% | |
| GAATCACATACATGTTTGTT+CGG | + | chr3.2:71930864-71930883 | MS.gene77464:CDS | 30.0% | |
| GAGACAATTTCACACTAAAA+AGG | - | chr3.2:71932746-71932765 | None:intergenic | 30.0% | |
| TTCATGGAGGAAAAAATAAC+TGG | - | chr3.2:71931942-71931961 | None:intergenic | 30.0% | |
| ! | AAGCCTTTTATGTTTATGTG+TGG | + | chr3.2:71931128-71931147 | MS.gene77464:CDS | 30.0% |
| ! | ACTCTAGTTTCTTTGGATTT+AGG | - | chr3.2:71932379-71932398 | None:intergenic | 30.0% |
| ! | AGCCTTTTATGTTTATGTGT+GGG | + | chr3.2:71931129-71931148 | MS.gene77464:CDS | 30.0% |
| ! | ATACTTCACTCTAGTTTCTT+TGG | - | chr3.2:71932386-71932405 | None:intergenic | 30.0% |
| ! | TATTGTTGTTGCACTTCATT+TGG | + | chr3.2:71932054-71932073 | MS.gene77464:intron | 30.0% |
| ! | TTTTGTATCTAAGCAACTCA+TGG | + | chr3.2:71932626-71932645 | MS.gene77464:intron | 30.0% |
| !!! | CAATGTAGATTTGCTTTTTC+TGG | - | chr3.2:71931366-71931385 | None:intergenic | 30.0% |
| !!! | TGTAGATTTGCATTTTTTGG+AGG | - | chr3.2:71933593-71933612 | None:intergenic | 30.0% |
| !!! | TTCTTGTTTTTGTGCTTGAA+AGG | - | chr3.2:71931640-71931659 | None:intergenic | 30.0% |
| AAAAAACTGGCTGAAGCTTA+TGG | - | chr3.2:71932274-71932293 | None:intergenic | 35.0% | |
| AATTGGAAGCTGCATTATGT+GGG | + | chr3.2:71932154-71932173 | MS.gene77464:intron | 35.0% | |
| ACATAATTTGGCCATGTATG+TGG | + | chr3.2:71932683-71932702 | MS.gene77464:intron | 35.0% | |
| ACCTAACACATACATCATCA+CGG | + | chr3.2:71931759-71931778 | MS.gene77464:intron | 35.0% | |
| AGATCTTCTGTTAAGCTGAT+AGG | - | chr3.2:71933629-71933648 | None:intergenic | 35.0% | |
| ATAAGGATATTAGAATCGCC+AGG | + | chr3.2:71931189-71931208 | MS.gene77464:CDS | 35.0% | |
| CAAAATTTGCACCCTAAATC+AGG | - | chr3.2:71933793-71933812 | None:intergenic | 35.0% | |
| CATACAATGAGGTGCAAAAA+TGG | - | chr3.2:71932488-71932507 | None:intergenic | 35.0% | |
| GCGATTTACGCATAAGAATA+AGG | + | chr3.2:71933379-71933398 | MS.gene77464:intron | 35.0% | |
| GCGATTTACGTACAAGAATA+AGG | + | chr3.2:71931151-71931170 | MS.gene77464:CDS | 35.0% | |
| GTAATGTAATACATACGACC+AGG | - | chr3.2:71931618-71931637 | None:intergenic | 35.0% | |
| GTAATGTAATACGTATGACC+AGG | - | chr3.2:71933848-71933867 | None:intergenic | 35.0% | |
| TAAGGATATTAGAATCGCCA+GGG | + | chr3.2:71931190-71931209 | MS.gene77464:CDS | 35.0% | |
| TAGATAGATGCGTTACTGAT+AGG | - | chr3.2:71931241-71931260 | None:intergenic | 35.0% | |
| TATCTAAGCAACTCATGGAT+TGG | + | chr3.2:71932631-71932650 | MS.gene77464:intron | 35.0% | |
| ! | AAGATCATTGGTTAAGTCGA+TGG | - | chr3.2:71931400-71931419 | None:intergenic | 35.0% |
| ! | AGATCATTGGTTAAGTCGAT+GGG | - | chr3.2:71931399-71931418 | None:intergenic | 35.0% |
| ! | TAATTTTCCAGGCACAAGTA+CGG | + | chr3.2:71933912-71933931 | MS.gene77464:CDS | 35.0% |
| ! | TGATGATGTATGTGTTAGGT+AGG | - | chr3.2:71931759-71931778 | None:intergenic | 35.0% |
| !! | TTCTTGTTTCTGTGCTTGAA+AGG | - | chr3.2:71933870-71933889 | None:intergenic | 35.0% |
| !!! | TGTAGATTTGCTTTTTCTGG+AGG | - | chr3.2:71931363-71931382 | None:intergenic | 35.0% |
| AACGGCGAGAGAAATATGAA+TGG | + | chr3.2:71931045-71931064 | MS.gene77464:CDS | 40.0% | |
| ACGGCGAGAGAAATATGAAT+GGG | + | chr3.2:71931046-71931065 | MS.gene77464:CDS | 40.0% | |
| AGAAAAGGGTCAACATTCCA+TGG | - | chr3.2:71932120-71932139 | None:intergenic | 40.0% | |
| AGTGAAGTCAGTAGCGAAAA+AGG | - | chr3.2:71932457-71932476 | None:intergenic | 40.0% | |
| ATAAGGAGATTAGAATCGCC+AGG | + | chr3.2:71933417-71933436 | MS.gene77464:intron | 40.0% | |
| CAATTGGAAGCTGCATTATG+TGG | + | chr3.2:71932153-71932172 | MS.gene77464:intron | 40.0% | |
| CGCCCACACATAAACATAAA+AGG | - | chr3.2:71931134-71931153 | None:intergenic | 40.0% | |
| GAAAATTATAGCAGGGCTGT+TGG | - | chr3.2:71931676-71931695 | None:intergenic | 40.0% | |
| GCATTCCAATGCATACAATG+AGG | - | chr3.2:71932499-71932518 | None:intergenic | 40.0% | |
| GGAGAATTGAAGTTAGCAAG+TGG | + | chr3.2:71932321-71932340 | MS.gene77464:intron | 40.0% | |
| GGCTCAGATTCAACAAGATA+AGG | + | chr3.2:71931172-71931191 | MS.gene77464:CDS | 40.0% | |
| GTCTAATGCAAACTTGCAGA+GGG | - | chr3.2:71931439-71931458 | None:intergenic | 40.0% | |
| GTGCCTGGAAAATTATAGCA+GGG | - | chr3.2:71933907-71933926 | None:intergenic | 40.0% | |
| TAAGGAGATTAGAATCGCCA+GGG | + | chr3.2:71933418-71933437 | MS.gene77464:intron | 40.0% | |
| TATGTGTTAGGTAGGCTTCA+TGG | - | chr3.2:71931751-71931770 | None:intergenic | 40.0% | |
| TCATATTTCTCTCGCCGTTT+CGG | - | chr3.2:71931044-71931063 | None:intergenic | 40.0% | |
| TCTAATGCAAACTTGCAGAG+GGG | - | chr3.2:71931438-71931457 | None:intergenic | 40.0% | |
| TGTCTAATGCAAACTTGCAG+AGG | - | chr3.2:71931440-71931459 | None:intergenic | 40.0% | |
| TGTGCCTGGAAAATTATAGC+AGG | - | chr3.2:71933908-71933927 | None:intergenic | 40.0% | |
| TTGCACCTCATTGTATGCAT+TGG | + | chr3.2:71932491-71932510 | MS.gene77464:intron | 40.0% | |
| ! | AATTTTCCAGGCCCAAGTAT+GGG | + | chr3.2:71931689-71931708 | MS.gene77464:CDS | 40.0% |
| ! | ACCGTGATGATGTATGTGTT+AGG | - | chr3.2:71931763-71931782 | None:intergenic | 40.0% |
| ! | TAATTTTCCAGGCCCAAGTA+TGG | + | chr3.2:71931688-71931707 | MS.gene77464:CDS | 40.0% |
| !! | GTGCATGTGTTAGGTTTTGA+TGG | - | chr3.2:71932186-71932205 | None:intergenic | 40.0% |
| !!! | TGCATTTTTTGGAGGAGTGA+TGG | - | chr3.2:71933585-71933604 | None:intergenic | 40.0% |
| !!! | TTTTTCGCTACTGACTTCAC+TGG | + | chr3.2:71932456-71932475 | MS.gene77464:intron | 40.0% |
| AAGTACGGAACAAGAGGCTT+GGG | + | chr3.2:71933927-71933946 | MS.gene77464:CDS | 45.0% | |
| AGCAAGTGGAAACTAGTGAG+CGG | + | chr3.2:71932335-71932354 | MS.gene77464:intron | 45.0% | |
| ATTATAGCAGGGCTGTTGGA+AGG | - | chr3.2:71931672-71931691 | None:intergenic | 45.0% | |
| CAAGTACAATGCTGAGAACC+AGG | + | chr3.2:71931458-71931477 | MS.gene77464:CDS | 45.0% | |
| CTGACATTGTGAAGACAACC+TGG | + | chr3.2:71931589-71931608 | MS.gene77464:CDS | 45.0% | |
| CTGACTTCAACTGTAAGCCA+TGG | + | chr3.2:71932100-71932119 | MS.gene77464:intron | 45.0% | |
| GAGTTCAAGGCGAAGATCAT+TGG | - | chr3.2:71931412-71931431 | None:intergenic | 45.0% | |
| GGCTTACAGTTGAAGTCAGT+AGG | - | chr3.2:71932099-71932118 | None:intergenic | 45.0% | |
| GGGCCTGGAAAATTATAGCA+GGG | - | chr3.2:71931683-71931702 | None:intergenic | 45.0% | |
| GTCTAACGCAAACTTGCAGA+GGG | - | chr3.2:71933669-71933688 | None:intergenic | 45.0% | |
| TCTAACGCAAACTTGCAGAG+GGG | - | chr3.2:71933668-71933687 | None:intergenic | 45.0% | |
| TGGGCCTGGAAAATTATAGC+AGG | - | chr3.2:71931684-71931703 | None:intergenic | 45.0% | |
| TGTCTAACGCAAACTTGCAG+AGG | - | chr3.2:71933670-71933689 | None:intergenic | 45.0% | |
| ! | CAGCCCTGCTATAATTTTCC+AGG | + | chr3.2:71931677-71931696 | MS.gene77464:CDS | 45.0% |
| ! | GAGCTTTTTATGCTTAGCCC+TGG | - | chr3.2:71933438-71933457 | None:intergenic | 45.0% |
| !! | TTCAGGTTGCAATTCCGGTT+CGG | - | chr3.2:71930943-71930962 | None:intergenic | 45.0% |
| !! | ATAAAAAAAATAAAAATAGA+CGG | + | chr3.2:71932905-71932924 | MS.gene77464:intron | 5.0% |
| !! | ATAATAATTATTGTAATTTA+AGG | - | chr3.2:71933716-71933735 | None:intergenic | 5.0% |
| !!! | AAAAAATTGATTTTTTTTAA+TGG | - | chr3.2:71933224-71933243 | None:intergenic | 5.0% |
| AACTGAAGTCGCAGCCGAAA+CGG | + | chr3.2:71931027-71931046 | MS.gene77464:CDS | 50.0% | |
| ACCGGAACTGAAGTTGGAAC+CGG | + | chr3.2:71930992-71931011 | MS.gene77464:CDS | 50.0% | |
| ACCTGAACCCGAACTGAAGT+CGG | + | chr3.2:71930956-71930975 | MS.gene77464:CDS | 50.0% | |
| AGGCACAAGTACGGAACAAG+AGG | + | chr3.2:71933921-71933940 | MS.gene77464:CDS | 50.0% | |
| AGTGAGCGGTATGCTATGCT+AGG | + | chr3.2:71932349-71932368 | MS.gene77464:intron | 50.0% | |
| ATACATACGACCAGGTCTCC+AGG | - | chr3.2:71931610-71931629 | None:intergenic | 50.0% | |
| ATACGTATGACCAGGTCTCC+AGG | - | chr3.2:71933840-71933859 | None:intergenic | 50.0% | |
| ATTGCCACCGGAACTGAAGT+TGG | + | chr3.2:71930986-71931005 | MS.gene77464:CDS | 50.0% | |
| CAAGTACGGAACAAGAGGCT+TGG | + | chr3.2:71933926-71933945 | MS.gene77464:CDS | 50.0% | |
| CGGATTGCTGCGATGAAAGA+GGG | + | chr3.2:71930904-71930923 | MS.gene77464:CDS | 50.0% | |
| TCCGGTTCCAACTTCAGTTC+CGG | - | chr3.2:71930996-71931015 | None:intergenic | 50.0% | |
| TCTTGTTCCGTACTTGTGCC+TGG | - | chr3.2:71933922-71933941 | None:intergenic | 50.0% | |
| TCTTTCATCGCAGCAATCCG+TGG | - | chr3.2:71930904-71930923 | None:intergenic | 50.0% | |
| TTCAGTTCCGGTGGCAATTC+CGG | - | chr3.2:71930984-71931003 | None:intergenic | 50.0% | |
| TTCCGGTTCCGACTTCAGTT+CGG | - | chr3.2:71930967-71930986 | None:intergenic | 50.0% | |
| ! | ACGGATTGCTGCGATGAAAG+AGG | + | chr3.2:71930903-71930922 | MS.gene77464:CDS | 50.0% |
| ! | GAAGTGCCTGAAATCCGAAC+CGG | + | chr3.2:71930926-71930945 | MS.gene77464:CDS | 50.0% |
| ! | TTCAGTTCCGGTGCTAACTC+CGG | - | chr3.2:71931014-71931033 | None:intergenic | 50.0% |
| !! | GCAATTCCGGTTCGGATTTC+AGG | - | chr3.2:71930935-71930954 | None:intergenic | 50.0% |
| !! | TCGGGTTCAGGTTGCAATTC+CGG | - | chr3.2:71930948-71930967 | None:intergenic | 50.0% |
| !!! | TGCTTTTTCTGGAGGAGCGA+TGG | - | chr3.2:71931355-71931374 | None:intergenic | 50.0% |
| AAGTATGGGACAGGAGGCCT+GGG | + | chr3.2:71931703-71931722 | MS.gene77464:CDS | 55.0% | |
| ACCCGAACTGAAGTCGGAAC+CGG | + | chr3.2:71930962-71930981 | MS.gene77464:CDS | 55.0% | |
| AGGCCTCCTGTCCCATACTT+GGG | - | chr3.2:71931703-71931722 | None:intergenic | 55.0% | |
| ATGGCACACGACTTGACCAC+AGG | - | chr3.2:71931732-71931751 | None:intergenic | 55.0% | |
| CCTAACACATGCACCCACCA+TGG | + | chr3.2:71932192-71932211 | MS.gene77464:intron | 55.0% | |
| GGTTCCAACTTCAGTTCCGG+TGG | - | chr3.2:71930993-71931012 | None:intergenic | 55.0% | |
| GTGAAGACAACCTGGAGACC+TGG | + | chr3.2:71931597-71931616 | MS.gene77464:CDS | 55.0% | |
| GTTGGAACCGGAGTTAGCAC+CGG | + | chr3.2:71931004-71931023 | MS.gene77464:CDS | 55.0% | |
| TCCGGTTCCGACTTCAGTTC+GGG | - | chr3.2:71930966-71930985 | None:intergenic | 55.0% | |
| TCGCCAGGGCTAAGCATAGA+AGG | + | chr3.2:71931204-71931223 | MS.gene77464:CDS | 55.0% | |
| TGCAGAGGGGAGTGAGTCTA+AGG | - | chr3.2:71933655-71933674 | None:intergenic | 55.0% | |
| TGCAGAGGGGAGTGAGTTCA+AGG | - | chr3.2:71931425-71931444 | None:intergenic | 55.0% | |
| TTCGGCTGCGACTTCAGTTC+CGG | - | chr3.2:71931026-71931045 | None:intergenic | 55.0% | |
| ! | GGAGGAGTGATGGCATCGAA+AGG | - | chr3.2:71933575-71933594 | None:intergenic | 55.0% |
| ! | TCCGACTTCAGTTCGGGTTC+AGG | - | chr3.2:71930960-71930979 | None:intergenic | 55.0% |
| !! | CCATGGTGGGTGCATGTGTT+AGG | - | chr3.2:71932195-71932214 | None:intergenic | 55.0% |
| AGGCCCAAGTATGGGACAGG+AGG | + | chr3.2:71931697-71931716 | MS.gene77464:CDS | 60.0% | |
| CAAGTATGGGACAGGAGGCC+TGG | + | chr3.2:71931702-71931721 | MS.gene77464:CDS | 60.0% | |
| CAGGCCTCCTGTCCCATACT+TGG | - | chr3.2:71931704-71931723 | None:intergenic | 60.0% | |
| GCACACGACTTGACCACAGG+TGG | - | chr3.2:71931729-71931748 | None:intergenic | 60.0% | |
| GCGCCTTCTATGCTTAGCCC+TGG | - | chr3.2:71931210-71931229 | None:intergenic | 60.0% | |
| GTCGGAACCGGAATTGCCAC+CGG | + | chr3.2:71930974-71930993 | MS.gene77464:CDS | 60.0% | |
| TCATCGCAGCAATCCGTGGC+AGG | - | chr3.2:71930900-71930919 | None:intergenic | 60.0% | |
| TCCAGGCCCAAGTATGGGAC+AGG | + | chr3.2:71931694-71931713 | MS.gene77464:CDS | 60.0% | |
| TCCTGTCCCATACTTGGGCC+TGG | - | chr3.2:71931698-71931717 | None:intergenic | 60.0% | |
| CAAGAGGCTTGGGCCACCTG+TGG | + | chr3.2:71933937-71933956 | MS.gene77464:CDS | 65.0% | |
| CGCAGCAATCCGTGGCAGGT+CGG | - | chr3.2:71930896-71930915 | None:intergenic | 65.0% | |
| GACTTGACCACAGGTGGCCC+AGG | - | chr3.2:71931723-71931742 | None:intergenic | 65.0% | |
| CGGCGTCATCCGACCTGCCA+CGG | + | chr3.2:71930884-71930903 | MS.gene77464:CDS | 70.0% | |
| CAGGAGGCCTGGGCCACCTG+TGG | + | chr3.2:71931713-71931732 | MS.gene77464:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 71930855 | 71933985 | 71930855 | ID=MS.gene77464 |
| chr3.2 | mRNA | 71930855 | 71933985 | 71930855 | ID=MS.gene77464.t1;Parent=MS.gene77464 |
| chr3.2 | exon | 71930855 | 71931244 | 71930855 | ID=MS.gene77464.t1.exon1;Parent=MS.gene77464.t1 |
| chr3.2 | CDS | 71930855 | 71931244 | 71930855 | ID=cds.MS.gene77464.t1;Parent=MS.gene77464.t1 |
| chr3.2 | exon | 71931342 | 71931479 | 71931342 | ID=MS.gene77464.t1.exon2;Parent=MS.gene77464.t1 |
| chr3.2 | CDS | 71931342 | 71931479 | 71931342 | ID=cds.MS.gene77464.t1;Parent=MS.gene77464.t1 |
| chr3.2 | exon | 71931570 | 71931734 | 71931570 | ID=MS.gene77464.t1.exon3;Parent=MS.gene77464.t1 |
| chr3.2 | CDS | 71931570 | 71931734 | 71931570 | ID=cds.MS.gene77464.t1;Parent=MS.gene77464.t1 |
| chr3.2 | exon | 71933572 | 71933709 | 71933572 | ID=MS.gene77464.t1.exon4;Parent=MS.gene77464.t1 |
| chr3.2 | CDS | 71933572 | 71933709 | 71933572 | ID=cds.MS.gene77464.t1;Parent=MS.gene77464.t1 |
| chr3.2 | exon | 71933800 | 71933985 | 71933800 | ID=MS.gene77464.t1.exon5;Parent=MS.gene77464.t1 |
| chr3.2 | CDS | 71933800 | 71933985 | 71933800 | ID=cds.MS.gene77464.t1;Parent=MS.gene77464.t1 |
| Gene Sequence |
| Protein sequence |
