Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044411.t1 | XP_013457939.1 | 100 | 365 | 0 | 0 | 290 | 654 | 61 | 425 | 7.70E-215 | 756.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044411.t1 | Q56Y85 | 92.8 | 361 | 26 | 0 | 294 | 654 | 79 | 439 | 4.0e-204 | 712.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044411.t1 | A0A072V1I1 | 100.0 | 365 | 0 | 0 | 290 | 654 | 61 | 425 | 5.6e-215 | 756.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044411 | MS.gene63721 | PPI |
| MS.gene044411 | MS.gene58403 | PPI |
| MS.gene044411 | MS.gene059218 | PPI |
| MS.gene044411 | MS.gene48925 | PPI |
| MS.gene044411 | MS.gene45850 | PPI |
| MS.gene044411 | MS.gene91353 | PPI |
| MS.gene044411 | MS.gene48242 | PPI |
| MS.gene044411 | MS.gene48240 | PPI |
| MS.gene93798 | MS.gene044411 | PPI |
| MS.gene044411 | MS.gene93798 | PPI |
| MS.gene044411 | MS.gene48237 | PPI |
| MS.gene044411 | MS.gene060216 | PPI |
| MS.gene044411 | MS.gene93411 | PPI |
| MS.gene044411 | MS.gene033096 | PPI |
| MS.gene044411 | MS.gene063366 | PPI |
| MS.gene044411 | MS.gene064281 | PPI |
| MS.gene044411 | MS.gene039110 | PPI |
| MS.gene066163 | MS.gene044411 | PPI |
| MS.gene040581 | MS.gene044411 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044411.t1 | MTR_4g109100 | 100.000 | 366 | 0 | 0 | 289 | 654 | 60 | 425 | 0.0 | 776 |
| MS.gene044411.t1 | MTR_1g105940 | 99.180 | 366 | 3 | 0 | 289 | 654 | 63 | 428 | 0.0 | 773 |
| MS.gene044411.t1 | MTR_1g105940 | 98.806 | 335 | 4 | 0 | 320 | 654 | 10 | 344 | 0.0 | 701 |
| MS.gene044411.t1 | MTR_4g109130 | 100.000 | 145 | 0 | 0 | 1 | 145 | 1 | 145 | 1.30e-99 | 301 |
| MS.gene044411.t1 | MTR_3g437680 | 97.241 | 145 | 4 | 0 | 1 | 145 | 1 | 145 | 3.19e-97 | 295 |
| MS.gene044411.t1 | MTR_3g437680 | 97.241 | 145 | 4 | 0 | 1 | 145 | 1 | 145 | 3.19e-97 | 295 |
| MS.gene044411.t1 | MTR_4g130917 | 93.793 | 145 | 9 | 0 | 1 | 145 | 1 | 145 | 9.03e-93 | 284 |
| MS.gene044411.t1 | MTR_5g042990 | 92.414 | 145 | 11 | 0 | 1 | 145 | 1 | 145 | 2.81e-92 | 282 |
| MS.gene044411.t1 | MTR_4g130917 | 92.913 | 127 | 9 | 0 | 1 | 127 | 1 | 127 | 1.18e-79 | 249 |
| MS.gene044411.t1 | MTR_5g042990 | 92.126 | 127 | 10 | 0 | 1 | 127 | 1 | 127 | 1.51e-79 | 249 |
| MS.gene044411.t1 | MTR_5g042990 | 86.232 | 138 | 19 | 0 | 1 | 138 | 1 | 138 | 2.52e-79 | 248 |
| MS.gene044411.t1 | MTR_4g109130 | 90.000 | 120 | 12 | 0 | 1 | 120 | 1 | 120 | 2.15e-69 | 221 |
| MS.gene044411.t1 | MTR_4g112440 | 71.569 | 102 | 19 | 1 | 1 | 102 | 1 | 92 | 1.10e-43 | 152 |
| MS.gene044411.t1 | MTR_2g078290 | 25.000 | 332 | 229 | 7 | 330 | 649 | 7 | 330 | 5.77e-28 | 117 |
| MS.gene044411.t1 | MTR_7g069390 | 25.602 | 332 | 213 | 8 | 330 | 642 | 7 | 323 | 1.14e-26 | 113 |
| MS.gene044411.t1 | MTR_4g130907 | 45.113 | 133 | 25 | 2 | 18 | 150 | 42 | 126 | 4.48e-23 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044411.t1 | AT3G59990 | 92.562 | 363 | 27 | 0 | 292 | 654 | 77 | 439 | 0.0 | 733 |
| MS.gene044411.t1 | AT3G59990 | 92.562 | 363 | 27 | 0 | 292 | 654 | 77 | 439 | 0.0 | 733 |
| MS.gene044411.t1 | AT3G59990 | 92.562 | 363 | 27 | 0 | 292 | 654 | 77 | 439 | 0.0 | 733 |
| MS.gene044411.t1 | AT3G59990 | 92.562 | 363 | 27 | 0 | 292 | 654 | 77 | 439 | 0.0 | 733 |
| MS.gene044411.t1 | AT2G44180 | 90.385 | 364 | 35 | 0 | 291 | 654 | 78 | 441 | 0.0 | 715 |
| MS.gene044411.t1 | AT2G44180 | 90.966 | 321 | 29 | 0 | 334 | 654 | 1 | 321 | 0.0 | 627 |
| MS.gene044411.t1 | AT1G13950 | 91.724 | 145 | 11 | 1 | 1 | 145 | 1 | 144 | 1.70e-89 | 275 |
| MS.gene044411.t1 | AT1G69410 | 88.276 | 145 | 16 | 1 | 1 | 145 | 1 | 144 | 2.38e-86 | 267 |
| MS.gene044411.t1 | AT1G26630 | 82.069 | 145 | 25 | 1 | 1 | 145 | 1 | 144 | 2.60e-80 | 251 |
| MS.gene044411.t1 | AT1G26630 | 83.465 | 127 | 20 | 1 | 1 | 127 | 1 | 126 | 1.66e-70 | 225 |
| MS.gene044411.t1 | AT3G51800 | 26.549 | 339 | 215 | 8 | 330 | 649 | 8 | 331 | 1.92e-28 | 118 |
| MS.gene044411.t1 | AT3G51800 | 26.549 | 339 | 215 | 8 | 330 | 649 | 8 | 331 | 2.49e-28 | 118 |
| MS.gene044411.t1 | AT3G51800 | 26.149 | 348 | 214 | 9 | 330 | 649 | 8 | 340 | 4.11e-26 | 111 |
Find 169 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAACTTTCAAAGTTATTA+TGG | 0.201569 | 8.4:+18409754 | MS.gene044411:intron |
| TCATGTAGTGGCTGCATTCC+AGG | 0.242992 | 8.4:-18417732 | None:intergenic |
| CTACGAACTGAATTATATAT+TGG | 0.245822 | 8.4:-18413460 | None:intergenic |
| TCATATGAGGTTGAGATTAA+TGG | 0.269675 | 8.4:+18416663 | MS.gene044411:CDS |
| ATTTCTATGCTAGTAACTTA+TGG | 0.289934 | 8.4:+18413392 | MS.gene044411:intron |
| GATCTATCTATCCTTTAAAA+AGG | 0.296203 | 8.4:+18409226 | MS.gene044411:CDS |
| CATCGGCCTTAGATTCAAAT+TGG | 0.297056 | 8.4:-18402409 | None:intergenic |
| CTCATTGACATTTCTGAAGA+TGG | 0.299146 | 8.4:+18402899 | MS.gene044411:CDS |
| TACTGCTGAATTTCACCTTC+TGG | 0.301917 | 8.4:-18412484 | None:intergenic |
| TTTCCAGGGTTGCCGCTCAT+TGG | 0.306132 | 8.4:+18414642 | MS.gene044411:intron |
| AACAGTCTTATCTCCAGAAT+TGG | 0.317380 | 8.4:-18414669 | None:intergenic |
| TTCTATGCAATTGAAACATT+CGG | 0.327183 | 8.4:+18417594 | MS.gene044411:CDS |
| GTGAGCTTGCTCACTGAAAA+TGG | 0.342511 | 8.4:+18403497 | MS.gene044411:CDS |
| GTTCTTGATCTTTACCCATC+TGG | 0.344235 | 8.4:+18412454 | MS.gene044411:CDS |
| AGCAACCTATACGGGTATTA+AGG | 0.345844 | 8.4:+18414925 | MS.gene044411:CDS |
| CGCTAATAGTTGCTTAGCTC+TGG | 0.346936 | 8.4:-18417791 | None:intergenic |
| CTCTAGGGAAGCAACCTATA+CGG | 0.355384 | 8.4:+18414916 | MS.gene044411:CDS |
| AGGAGAGACTAAATACTTAA+TGG | 0.355741 | 8.4:+18417870 | MS.gene044411:CDS |
| TCATTGCAGTTAAGAGTATA+CGG | 0.356486 | 8.4:+18417472 | MS.gene044411:intron |
| CTTGGCATGTCCATGCTTCC+CGG | 0.359341 | 8.4:-18402648 | None:intergenic |
| GTGTGATGCTGGCATTGTTC+AGG | 0.364503 | 8.4:+18417906 | MS.gene044411:CDS |
| CATATGAGGTTGAGATTAAT+GGG | 0.366320 | 8.4:+18416664 | MS.gene044411:CDS |
| GGTGGATCTGTCTGCTCAAC+GGG | 0.375413 | 8.4:-18412421 | None:intergenic |
| AAGTCGGACATCAGCATTCC+AGG | 0.376276 | 8.4:-18414042 | None:intergenic |
| AGAGCACCAATTTGAATCTA+AGG | 0.377994 | 8.4:+18402403 | MS.gene044411:CDS |
| CCACAGGATGCTCTCTGAAT+TGG | 0.378932 | 8.4:+18414136 | MS.gene044411:CDS |
| ACAGTCTTATCTCCAGAATT+GGG | 0.382436 | 8.4:-18414668 | None:intergenic |
| AGCTTGTTGAGGATAAGTTT+TGG | 0.388597 | 8.4:-18402441 | None:intergenic |
| GATGTGATGAAGTTGGATTT+TGG | 0.396243 | 8.4:+18414704 | MS.gene044411:CDS |
| GTTCAATGGAATTCATTGTC+AGG | 0.397946 | 8.4:-18404989 | None:intergenic |
| TCTATGCAATTGAAACATTC+GGG | 0.399479 | 8.4:+18417595 | MS.gene044411:CDS |
| AAGTACCTTAATACCCGTAT+AGG | 0.400679 | 8.4:-18414930 | None:intergenic |
| TGCTCTCCACCTTTCACAAT+GGG | 0.411459 | 8.4:-18417549 | None:intergenic |
| AGAGGAAGACAAGGAGCTTA+TGG | 0.412214 | 8.4:+18409799 | MS.gene044411:CDS |
| TGGTTTACCATTTAGGAAGC+TGG | 0.415762 | 8.4:+18416588 | MS.gene044411:intron |
| TAATCTAGAGGTTCTCTTAG+AGG | 0.416071 | 8.4:+18404920 | MS.gene044411:intron |
| GATATAACTTCTTTGCATGT+TGG | 0.419203 | 8.4:-18418282 | None:intergenic |
| AGATCAAGAACAGGAATTGA+TGG | 0.426850 | 8.4:-18412442 | None:intergenic |
| TCCGCTTACGCTTCAATGAC+TGG | 0.427634 | 8.4:-18405091 | None:intergenic |
| TATGCGGTCAGGAGGAATAA+AGG | 0.429313 | 8.4:+18412397 | MS.gene044411:intron |
| ATTGAAACATTCGGGTCAAC+TGG | 0.430618 | 8.4:+18417603 | MS.gene044411:CDS |
| CAAGCAGTGGGTCAAACATT+GGG | 0.444461 | 8.4:-18414889 | None:intergenic |
| AGCAGCAGAAGTTCATCGTC+AGG | 0.444926 | 8.4:+18413483 | MS.gene044411:CDS |
| TCTTACAGCAGTATATCATA+AGG | 0.449795 | 8.4:+18407185 | MS.gene044411:intron |
| TAACTATGTATCCATTCTTA+CGG | 0.463557 | 8.4:-18402472 | None:intergenic |
| GCTGAAGAAATTATCTTCAA+AGG | 0.469330 | 8.4:+18407382 | MS.gene044411:CDS |
| CCCACTGCTTGAAGCCTCTA+GGG | 0.469534 | 8.4:+18414901 | MS.gene044411:CDS |
| TGCAAAGAAGTTATATCAAA+GGG | 0.471006 | 8.4:+18418288 | MS.gene044411:CDS |
| AATGTCAATGAGCTGATAAT+CGG | 0.473877 | 8.4:-18402888 | None:intergenic |
| ATCTAAATATCGCCTACAAA+AGG | 0.477272 | 8.4:-18417842 | None:intergenic |
| GAATTCCATTGAACAGAATC+CGG | 0.478860 | 8.4:+18404998 | MS.gene044411:CDS |
| GCTGGCATTGCTTTCCCCAC+AGG | 0.481828 | 8.4:+18414120 | MS.gene044411:CDS |
| AGCCATTGTCTGTCATCTGC+AGG | 0.482706 | 8.4:+18404958 | MS.gene044411:CDS |
| TTAAGTATTTAGTCTCTCCT+AGG | 0.484045 | 8.4:-18417867 | None:intergenic |
| GCTGGTACCATCCGTAAGAA+TGG | 0.484451 | 8.4:+18402461 | MS.gene044411:CDS |
| TCAAGCAGTGGGTCAAACAT+TGG | 0.485383 | 8.4:-18414890 | None:intergenic |
| ATGAAAGGCATTATAAAGCC+TGG | 0.486937 | 8.4:+18414024 | MS.gene044411:CDS |
| ACATCACATAGAGGAGGATA+AGG | 0.488058 | 8.4:-18418213 | None:intergenic |
| AACTTGGAAGATTTAACACT+TGG | 0.489193 | 8.4:+18407352 | MS.gene044411:CDS |
| TATGAAACAGATTGTAGCTC+AGG | 0.489256 | 8.4:+18405049 | MS.gene044411:CDS |
| AAGAGTATACGGAATTTGAA+TGG | 0.489615 | 8.4:+18417483 | MS.gene044411:CDS |
| GTCTGTCATCTGCAGGATCA+AGG | 0.490936 | 8.4:+18404965 | MS.gene044411:CDS |
| TAACAAGAACTTCTCCACTT+TGG | 0.495871 | 8.4:+18417819 | MS.gene044411:CDS |
| TCCCTAGAGGCTTCAAGCAG+TGG | 0.496490 | 8.4:-18414902 | None:intergenic |
| GTATGATGATGTGATGAAGT+TGG | 0.503347 | 8.4:+18414697 | MS.gene044411:CDS |
| TTCAAAGTTATTATGGAGCA+AGG | 0.504540 | 8.4:+18409761 | MS.gene044411:CDS |
| GATGGGTAAAGATCAAGAAC+AGG | 0.505511 | 8.4:-18412451 | None:intergenic |
| TCAGAGGATGGCTTGCAAGC+TGG | 0.507428 | 8.4:+18414102 | MS.gene044411:CDS |
| CTTTGCATGTTGGTCGGAGT+AGG | 0.507622 | 8.4:-18418272 | None:intergenic |
| TCTAGGGAAGCAACCTATAC+GGG | 0.508969 | 8.4:+18414917 | MS.gene044411:CDS |
| TGTATCCGTGATGTCTGCTA+TGG | 0.510337 | 8.4:+18403732 | MS.gene044411:CDS |
| TTGAAGAACTTGTGTGATGC+TGG | 0.511073 | 8.4:+18417895 | MS.gene044411:CDS |
| CTTTGTGTGCAGATCAAGGA+TGG | 0.512763 | 8.4:+18403685 | MS.gene044411:intron |
| GAGCAGACAAAGATGGAAGA+GGG | 0.512947 | 8.4:+18417567 | MS.gene044411:CDS |
| ATGCAAAGAAGTTATATCAA+AGG | 0.517146 | 8.4:+18418287 | MS.gene044411:CDS |
| CACTGAAAATGGAAACACTA+AGG | 0.519818 | 8.4:+18403508 | MS.gene044411:CDS |
| AGAGGTCATGGAGTCATATG+AGG | 0.524843 | 8.4:+18416650 | MS.gene044411:CDS |
| CTCCAATGTTTCACATAAGT+CGG | 0.525311 | 8.4:-18414058 | None:intergenic |
| GAAGTTTCGACTTCGAAGAC+CGG | 0.527896 | 8.4:+18402629 | MS.gene044411:CDS |
| AGGTGGAGAGCAGACAAAGA+TGG | 0.531180 | 8.4:+18417560 | MS.gene044411:CDS |
| GAATAATCACCTTGCATGGA+CGG | 0.531922 | 8.4:-18402502 | None:intergenic |
| GTGGCAGTAGCATGCAAGAA+AGG | 0.532651 | 8.4:+18409828 | MS.gene044411:CDS |
| GGATGGATTTGCTGAGGGAA+AGG | 0.534900 | 8.4:+18403702 | MS.gene044411:CDS |
| TTCAATGGAATTCATTGTCA+GGG | 0.536941 | 8.4:-18404988 | None:intergenic |
| CTTCCTTTCACATCACATAG+AGG | 0.537139 | 8.4:-18418222 | None:intergenic |
| TGTCATCGGTGGGAAGTTTG+AGG | 0.539905 | 8.4:-18403535 | None:intergenic |
| TGCTGCAATTCAAGAGGTCA+TGG | 0.541118 | 8.4:+18416638 | MS.gene044411:CDS |
| AATTATATATTGGTTTCTGA+AGG | 0.541740 | 8.4:-18413450 | None:intergenic |
| CTGCTCTCCACCTTTCACAA+TGG | 0.543192 | 8.4:-18417550 | None:intergenic |
| CCCTAGAGGCTTCAAGCAGT+GGG | 0.545041 | 8.4:-18414901 | None:intergenic |
| TGGTGGATCTGTCTGCTCAA+CGG | 0.548615 | 8.4:-18412422 | None:intergenic |
| ATTAATGGGAAGGTGTATCA+AGG | 0.550038 | 8.4:+18416678 | MS.gene044411:CDS |
| AATTTGAATGGACATAGCAT+TGG | 0.550755 | 8.4:+18417495 | MS.gene044411:CDS |
| GATGTGCGCCTTTGTGATGT+TGG | 0.550983 | 8.4:+18416615 | MS.gene044411:CDS |
| ACCCACTGCTTGAAGCCTCT+AGG | 0.553042 | 8.4:+18414900 | MS.gene044411:CDS |
| ACTTCGAAGACCGGGAAGCA+TGG | 0.555740 | 8.4:+18402638 | MS.gene044411:CDS |
| CTGAGTGAGCAGACTGTCAT+CGG | 0.555770 | 8.4:-18403549 | None:intergenic |
| ATACTCCGGATTCTGTTCAA+TGG | 0.556785 | 8.4:-18405003 | None:intergenic |
| AATGACTGGTACTGAGTCGC+AGG | 0.557677 | 8.4:-18405077 | None:intergenic |
| TCCGTGTATTACCATCTATG+TGG | 0.557903 | 8.4:-18414730 | None:intergenic |
| TGTTTCATAGCCATGTATAA+CGG | 0.558165 | 8.4:-18405035 | None:intergenic |
| TTTGAATCTAAGGCCGATGC+CGG | 0.559985 | 8.4:+18402413 | MS.gene044411:CDS |
| TTACGAATAATCACCTTGCA+TGG | 0.560163 | 8.4:-18402506 | None:intergenic |
| TAACTTCTTTGCATGTTGGT+CGG | 0.562102 | 8.4:-18418278 | None:intergenic |
| AGAGCAGACAAAGATGGAAG+AGG | 0.562137 | 8.4:+18417566 | MS.gene044411:CDS |
| ATCAGAGGAGAAGAGAGAGC+TGG | 0.563096 | 8.4:+18413423 | MS.gene044411:CDS |
| TGCAGACACTCCGTTATACA+TGG | 0.568353 | 8.4:+18405025 | MS.gene044411:CDS |
| AACGGAGTGTCTGCATACTC+CGG | 0.574429 | 8.4:-18405017 | None:intergenic |
| CTGGTACTGAGTCGCAGGCG+TGG | 0.575097 | 8.4:-18405072 | None:intergenic |
| AGCAGACAAAGATGGAAGAG+GGG | 0.576340 | 8.4:+18417568 | MS.gene044411:CDS |
| GACAAGGAGCTTATGGAGCA+AGG | 0.578268 | 8.4:+18409806 | MS.gene044411:CDS |
| CTTCACTTCAAAGAAGCTTG+AGG | 0.580602 | 8.4:+18402694 | MS.gene044411:CDS |
| CCTTCTGGAAAATCTCCAGA+TGG | 0.580900 | 8.4:-18412469 | None:intergenic |
| AAAACTTATCCTCAACAAGC+TGG | 0.581192 | 8.4:+18402443 | MS.gene044411:CDS |
| GGCCGCTATCAAATTCATGC+TGG | 0.582517 | 8.4:+18417516 | MS.gene044411:CDS |
| GCTAATAGTTGCTTAGCTCT+GGG | 0.588420 | 8.4:-18417790 | None:intergenic |
| GTCCGACTTATGTGAAACAT+TGG | 0.589857 | 8.4:+18414056 | MS.gene044411:CDS |
| TCTGTTCCCATTGTGAAAGG+TGG | 0.590439 | 8.4:+18417543 | MS.gene044411:CDS |
| CAGTCTTATCTCCAGAATTG+GGG | 0.590689 | 8.4:-18414667 | None:intergenic |
| CCGTGTATTACCATCTATGT+GGG | 0.591599 | 8.4:-18414729 | None:intergenic |
| TGAGGTTGAGATTAATGGGA+AGG | 0.591975 | 8.4:+18416668 | MS.gene044411:CDS |
| CCTCCTCTATGTGATGTGAA+AGG | 0.592331 | 8.4:+18418219 | MS.gene044411:CDS |
| AGTGAGCAGACTGTCATCGG+TGG | 0.592770 | 8.4:-18403546 | None:intergenic |
| CTCTGATATTAGCTTACGAA+CGG | 0.593227 | 8.4:-18414085 | None:intergenic |
| AGGTTATGTACGAGAAGACC+TGG | 0.594209 | 8.4:+18417714 | MS.gene044411:CDS |
| AAGTTTCGACTTCGAAGACC+GGG | 0.594274 | 8.4:+18402630 | MS.gene044411:CDS |
| CGGATGGTACCAGCTTGTTG+AGG | 0.595998 | 8.4:-18402452 | None:intergenic |
| CGATGACAGTCTGCTCACTC+AGG | 0.597987 | 8.4:+18403550 | MS.gene044411:CDS |
| CGTATAGGTTGCTTCCCTAG+AGG | 0.600451 | 8.4:-18414915 | None:intergenic |
| AGGACTTGCAGAGGAAGACA+AGG | 0.601051 | 8.4:+18409790 | MS.gene044411:CDS |
| TCGCCTACAAAAGGCCAAAG+TGG | 0.603161 | 8.4:-18417833 | None:intergenic |
| TAGGTTCGGAAATATATGAA+AGG | 0.605556 | 8.4:+18414009 | MS.gene044411:intron |
| TATGTATCCATTCTTACGGA+TGG | 0.607030 | 8.4:-18402468 | None:intergenic |
| ACATCACAATTATGTGAAGA+CGG | 0.610965 | 8.4:-18402725 | None:intergenic |
| GCAGACAAAGATGGAAGAGG+GGG | 0.611179 | 8.4:+18417569 | MS.gene044411:CDS |
| CAATTCAGAGAGCATCCTGT+GGG | 0.612575 | 8.4:-18414135 | None:intergenic |
| GTATCCGTGATGTCTGCTAT+GGG | 0.612684 | 8.4:+18403733 | MS.gene044411:CDS |
| TACCAGCATGAATTTGATAG+CGG | 0.613927 | 8.4:-18417518 | None:intergenic |
| GTGAGCAGACTGTCATCGGT+GGG | 0.615967 | 8.4:-18403545 | None:intergenic |
| CTTAGAGGAGGAACATGGTG+TGG | 0.616245 | 8.4:+18404935 | MS.gene044411:CDS |
| GATCAAGGATGGATTTGCTG+AGG | 0.618132 | 8.4:+18403696 | MS.gene044411:intron |
| ATCAAGGATGGATTTGCTGA+GGG | 0.621184 | 8.4:+18403697 | MS.gene044411:CDS |
| AAACATTGGGTTGAACGCCA+CGG | 0.621240 | 8.4:-18414876 | None:intergenic |
| CGTAAGCTAATATCAGAGGA+TGG | 0.621543 | 8.4:+18414090 | MS.gene044411:CDS |
| TCAAGAACAGGAATTGATGG+TGG | 0.622681 | 8.4:-18412439 | None:intergenic |
| CGTTCGTAAGCTAATATCAG+AGG | 0.625420 | 8.4:+18414086 | MS.gene044411:CDS |
| AATAGCAACAAAATGACACT+TGG | 0.628478 | 8.4:-18402666 | None:intergenic |
| ATTATGGAGCAAGGAAGACA+AGG | 0.630410 | 8.4:+18409770 | MS.gene044411:CDS |
| CCTTTCACATCACATAGAGG+AGG | 0.635044 | 8.4:-18418219 | None:intergenic |
| CTTCTGGAAAATCTCCAGAT+GGG | 0.635992 | 8.4:-18412468 | None:intergenic |
| CAGACATCACGGATACAACA+AGG | 0.636222 | 8.4:-18403726 | None:intergenic |
| AGGCAAGGACTTATTGAGCA+AGG | 0.642985 | 8.4:+18409848 | MS.gene044411:CDS |
| GTTCTCTTAGAGGAGGAACA+TGG | 0.643855 | 8.4:+18404930 | MS.gene044411:CDS |
| AGGAAGACAAGGACTTGCAG+AGG | 0.645505 | 8.4:+18409781 | MS.gene044411:CDS |
| ATCCTGCAGATGACAGACAA+TGG | 0.646085 | 8.4:-18404960 | None:intergenic |
| AGGCGATATTTAGATCGCCT+AGG | 0.650391 | 8.4:+18417850 | MS.gene044411:CDS |
| CTCACCCATAGCAGACATCA+CGG | 0.653023 | 8.4:-18403737 | None:intergenic |
| TCTAGAGGTTCTCTTAGAGG+AGG | 0.653172 | 8.4:+18404923 | MS.gene044411:intron |
| AAATCTGTTCCCATTGTGAA+AGG | 0.658720 | 8.4:+18417540 | MS.gene044411:CDS |
| AGTAGCATGCAAGAAAGGCA+AGG | 0.663657 | 8.4:+18409833 | MS.gene044411:CDS |
| AGTCTTATCTCCAGAATTGG+GGG | 0.670396 | 8.4:-18414666 | None:intergenic |
| CCAATTCAGAGAGCATCCTG+TGG | 0.676893 | 8.4:-18414136 | None:intergenic |
| CTTATGGAGAACAACATCAG+AGG | 0.685730 | 8.4:+18413408 | MS.gene044411:CDS |
| TGTTGGTGCTGCAATTCAAG+AGG | 0.710293 | 8.4:+18416632 | MS.gene044411:CDS |
| TTGCAGCACCAACATCACAA+AGG | 0.716293 | 8.4:-18416623 | None:intergenic |
| AAGGAGCTTATGGAGCAAGG+TGG | 0.732569 | 8.4:+18409809 | MS.gene044411:CDS |
| TTAGCTCTGGGCAATCTCAG+CGG | 0.739474 | 8.4:-18417778 | None:intergenic |
| TAATCGGTACGATTCACGTG+AGG | 0.748646 | 8.4:-18402872 | None:intergenic |
| AATTCAGAGAGCATCCTGTG+GGG | 0.761775 | 8.4:-18414134 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 18402392 | 18418323 | 18402392 | ID=MS.gene044411 |
| chr8.4 | mRNA | 18402392 | 18418323 | 18402392 | ID=MS.gene044411.t1;Parent=MS.gene044411 |
| chr8.4 | exon | 18402392 | 18402514 | 18402392 | ID=MS.gene044411.t1.exon1;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18402392 | 18402514 | 18402392 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18402623 | 18402745 | 18402623 | ID=MS.gene044411.t1.exon2;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18402623 | 18402745 | 18402623 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18402869 | 18402925 | 18402869 | ID=MS.gene044411.t1.exon3;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18402869 | 18402925 | 18402869 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18403497 | 18403571 | 18403497 | ID=MS.gene044411.t1.exon4;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18403497 | 18403571 | 18403497 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18403697 | 18403754 | 18403697 | ID=MS.gene044411.t1.exon5;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18403697 | 18403754 | 18403697 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18404928 | 18405104 | 18404928 | ID=MS.gene044411.t1.exon6;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18404928 | 18405104 | 18404928 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18407193 | 18407206 | 18407193 | ID=MS.gene044411.t1.exon7;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18407193 | 18407206 | 18407193 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18407349 | 18407403 | 18407349 | ID=MS.gene044411.t1.exon8;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18407349 | 18407403 | 18407349 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18409226 | 18409247 | 18409226 | ID=MS.gene044411.t1.exon9;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18409226 | 18409247 | 18409226 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18409757 | 18409869 | 18409757 | ID=MS.gene044411.t1.exon10;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18409757 | 18409869 | 18409757 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18412288 | 18412324 | 18412288 | ID=MS.gene044411.t1.exon11;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18412288 | 18412324 | 18412288 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18412408 | 18412515 | 18412408 | ID=MS.gene044411.t1.exon12;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18412408 | 18412515 | 18412408 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18413405 | 18413504 | 18413405 | ID=MS.gene044411.t1.exon13;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18413405 | 18413504 | 18413405 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18414012 | 18414157 | 18414012 | ID=MS.gene044411.t1.exon14;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18414012 | 18414157 | 18414012 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18414649 | 18414740 | 18414649 | ID=MS.gene044411.t1.exon15;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18414649 | 18414740 | 18414649 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18414852 | 18414946 | 18414852 | ID=MS.gene044411.t1.exon16;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18414852 | 18414946 | 18414852 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18416603 | 18416699 | 18416603 | ID=MS.gene044411.t1.exon17;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18416603 | 18416699 | 18416603 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18417481 | 18417624 | 18417481 | ID=MS.gene044411.t1.exon18;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18417481 | 18417624 | 18417481 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18417710 | 18417927 | 18417710 | ID=MS.gene044411.t1.exon19;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18417710 | 18417927 | 18417710 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| chr8.4 | exon | 18418213 | 18418323 | 18418213 | ID=MS.gene044411.t1.exon20;Parent=MS.gene044411.t1 |
| chr8.4 | CDS | 18418213 | 18418323 | 18418213 | ID=cds.MS.gene044411.t1;Parent=MS.gene044411.t1 |
| Gene Sequence |
| Protein sequence |
