Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064281.t1 | XP_013457939.1 | 93.6 | 330 | 6 | 2 | 81 | 396 | 61 | 389 | 7.60E-173 | 616.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064281.t1 | Q56Y85 | 86.5 | 326 | 29 | 2 | 85 | 396 | 79 | 403 | 2.7e-163 | 576.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064281.t1 | A0A072V1I1 | 93.6 | 330 | 6 | 2 | 81 | 396 | 61 | 389 | 5.4e-173 | 616.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064281 | MS.gene63721 | PPI |
| MS.gene064281 | MS.gene58403 | PPI |
| MS.gene064281 | MS.gene059218 | PPI |
| MS.gene064281 | MS.gene45850 | PPI |
| MS.gene063366 | MS.gene064281 | PPI |
| MS.gene066163 | MS.gene064281 | PPI |
| MS.gene040581 | MS.gene064281 | PPI |
| MS.gene064281 | MS.gene48240 | PPI |
| MS.gene48925 | MS.gene064281 | PPI |
| MS.gene93798 | MS.gene064281 | PPI |
| MS.gene064281 | MS.gene91353 | PPI |
| MS.gene064281 | MS.gene48237 | PPI |
| MS.gene064281 | MS.gene93411 | PPI |
| MS.gene064281 | MS.gene033096 | PPI |
| MS.gene064281 | MS.gene060216 | PPI |
| MS.gene044411 | MS.gene064281 | PPI |
| MS.gene064281 | MS.gene039110 | PPI |
| MS.gene48242 | MS.gene064281 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064281.t1 | MTR_4g109100 | 93.391 | 348 | 8 | 2 | 63 | 396 | 43 | 389 | 0.0 | 665 |
| MS.gene064281.t1 | MTR_1g105940 | 92.749 | 331 | 9 | 2 | 80 | 396 | 63 | 392 | 0.0 | 634 |
| MS.gene064281.t1 | MTR_1g105940 | 93.980 | 299 | 4 | 1 | 112 | 396 | 10 | 308 | 0.0 | 580 |
| MS.gene064281.t1 | MTR_2g078290 | 23.264 | 288 | 184 | 8 | 122 | 378 | 7 | 288 | 5.08e-15 | 76.3 |
| MS.gene064281.t1 | MTR_7g069390 | 23.810 | 294 | 175 | 9 | 122 | 378 | 7 | 288 | 5.27e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064281.t1 | AT3G59990 | 86.280 | 328 | 30 | 2 | 83 | 396 | 77 | 403 | 0.0 | 598 |
| MS.gene064281.t1 | AT3G59990 | 86.280 | 328 | 30 | 2 | 83 | 396 | 77 | 403 | 0.0 | 598 |
| MS.gene064281.t1 | AT3G59990 | 86.280 | 328 | 30 | 2 | 83 | 396 | 77 | 403 | 0.0 | 598 |
| MS.gene064281.t1 | AT3G59990 | 86.280 | 328 | 30 | 2 | 83 | 396 | 77 | 403 | 0.0 | 598 |
| MS.gene064281.t1 | AT2G44180 | 84.802 | 329 | 35 | 2 | 82 | 396 | 78 | 405 | 0.0 | 588 |
| MS.gene064281.t1 | AT2G44180 | 86.667 | 285 | 24 | 1 | 126 | 396 | 1 | 285 | 0.0 | 517 |
| MS.gene064281.t1 | AT3G51800 | 25.085 | 295 | 170 | 10 | 122 | 378 | 8 | 289 | 4.69e-14 | 73.6 |
| MS.gene064281.t1 | AT3G51800 | 25.085 | 295 | 170 | 10 | 122 | 378 | 8 | 289 | 5.67e-14 | 73.2 |
| MS.gene064281.t1 | AT3G51800 | 25.085 | 295 | 170 | 10 | 122 | 378 | 8 | 289 | 7.09e-14 | 73.2 |
Find 100 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAACTTTCAAAGTTATTA+TGG | 0.201569 | 8.3:+15498104 | MS.gene064281:intron |
| GATCTATCTATCCTTTAAAA+AGG | 0.225702 | 8.3:+15497576 | MS.gene064281:CDS |
| TCATGTAGTGGCTGCATTCC+AGG | 0.242992 | 8.3:-15506054 | None:intergenic |
| CTACGAACTGAATTATATAT+TGG | 0.245822 | 8.3:-15501802 | None:intergenic |
| TCATATGAGGTTGAGATTAA+TGG | 0.269675 | 8.3:+15504987 | MS.gene064281:CDS |
| ATTTCTATGCTAGTAACTTA+TGG | 0.289934 | 8.3:+15501734 | MS.gene064281:intron |
| TTTCCAGGGTTGCCGCTCAT+TGG | 0.306132 | 8.3:+15502972 | MS.gene064281:intron |
| AACAGTCTTATCTCCAGAAT+TGG | 0.317380 | 8.3:-15502999 | None:intergenic |
| TTCTATGCAATTGAAACATT+CGG | 0.327183 | 8.3:+15505916 | MS.gene064281:CDS |
| GTTCTTGATCTTTACCCATC+TGG | 0.344235 | 8.3:+15500799 | MS.gene064281:CDS |
| AGCAACCTATACGGGTATTA+AGG | 0.345844 | 8.3:+15503254 | MS.gene064281:CDS |
| CGCTAATAGTTGCTTAGCTC+TGG | 0.346936 | 8.3:-15506113 | None:intergenic |
| GTACTGCTGATTTCACCTTC+TGG | 0.348870 | 8.3:-15500829 | None:intergenic |
| CTCTAGGGAAGCAACCTATA+CGG | 0.355384 | 8.3:+15503245 | MS.gene064281:CDS |
| AGGAGAGACTAAATACTTAA+TGG | 0.355741 | 8.3:+15506192 | MS.gene064281:CDS |
| TCATTGCAGTTAAGAGTATA+CGG | 0.356486 | 8.3:+15505794 | MS.gene064281:intron |
| GTGTGATGCTGGCATTGTTC+AGG | 0.364503 | 8.3:+15506228 | MS.gene064281:CDS |
| CATATGAGGTTGAGATTAAT+GGG | 0.366320 | 8.3:+15504988 | MS.gene064281:CDS |
| AAGTCGGACATCAGCATTCC+AGG | 0.376276 | 8.3:-15502380 | None:intergenic |
| ACAGTCTTATCTCCAGAATT+GGG | 0.382436 | 8.3:-15502998 | None:intergenic |
| GATGTGATGAAGTTGGATTT+TGG | 0.396243 | 8.3:+15503034 | MS.gene064281:CDS |
| TCTATGCAATTGAAACATTC+GGG | 0.399479 | 8.3:+15505917 | MS.gene064281:CDS |
| AAGTACCTTAATACCCGTAT+AGG | 0.400679 | 8.3:-15503259 | None:intergenic |
| TGCTCTCCACCTTTCACAAT+GGG | 0.411459 | 8.3:-15505871 | None:intergenic |
| AGAGGAAGACAAGGAGCTTA+TGG | 0.412214 | 8.3:+15498149 | MS.gene064281:CDS |
| TGGTTTACCATTTAGGAAGC+TGG | 0.415762 | 8.3:+15504912 | MS.gene064281:intron |
| AGATCAAGAACAGGAATTGA+TGG | 0.426850 | 8.3:-15500787 | None:intergenic |
| ATTGAAACATTCGGGTCAAC+TGG | 0.430618 | 8.3:+15505925 | MS.gene064281:CDS |
| CAAGCAGTGGGTCAAACATT+GGG | 0.444461 | 8.3:-15503218 | None:intergenic |
| AGCAGCAGAAGTTCATCGTC+AGG | 0.444926 | 8.3:+15501825 | MS.gene064281:CDS |
| GGTGGATCTGTCTGCCTCAC+GGG | 0.461387 | 8.3:-15500766 | None:intergenic |
| GCTGAAGAAATTATCTTCAA+AGG | 0.469330 | 8.3:+15495734 | MS.gene064281:CDS |
| CCCACTGCTTGAAGCCTCTA+GGG | 0.469534 | 8.3:+15503230 | MS.gene064281:CDS |
| TATGCGGTCAGGAAGAATAA+AGG | 0.475430 | 8.3:+15500742 | MS.gene064281:intron |
| ATCTAAATATCGCCTACAAA+AGG | 0.477272 | 8.3:-15506164 | None:intergenic |
| TTAAGTATTTAGTCTCTCCT+AGG | 0.484045 | 8.3:-15506189 | None:intergenic |
| TCAAGCAGTGGGTCAAACAT+TGG | 0.485383 | 8.3:-15503219 | None:intergenic |
| ATGAAAGGCATTATAAAGCC+TGG | 0.486937 | 8.3:+15502362 | MS.gene064281:CDS |
| AACTTGGAAGATTTAACACT+TGG | 0.489193 | 8.3:+15495704 | MS.gene064281:CDS |
| AAGAGTATACGGAATTTGAA+TGG | 0.489615 | 8.3:+15505805 | MS.gene064281:CDS |
| TAACAAGAACTTCTCCACTT+TGG | 0.495871 | 8.3:+15506141 | MS.gene064281:CDS |
| TCCCTAGAGGCTTCAAGCAG+TGG | 0.496490 | 8.3:-15503231 | None:intergenic |
| GTATGATGATGTGATGAAGT+TGG | 0.503347 | 8.3:+15503027 | MS.gene064281:CDS |
| TTCAAAGTTATTATGGAGCA+AGG | 0.504540 | 8.3:+15498111 | MS.gene064281:CDS |
| GATGGGTAAAGATCAAGAAC+AGG | 0.505511 | 8.3:-15500796 | None:intergenic |
| TCTAGGGAAGCAACCTATAC+GGG | 0.508969 | 8.3:+15503246 | MS.gene064281:CDS |
| TTGAAGAACTTGTGTGATGC+TGG | 0.511073 | 8.3:+15506217 | MS.gene064281:CDS |
| GAGCAGACAAAGATGGAAGA+GGG | 0.512947 | 8.3:+15505889 | MS.gene064281:CDS |
| TGGTGGATCTGTCTGCCTCA+CGG | 0.516252 | 8.3:-15500767 | None:intergenic |
| AGAGGTCATGGAGTCATATG+AGG | 0.524843 | 8.3:+15504974 | MS.gene064281:CDS |
| CTCCAATGTTTCACATAAGT+CGG | 0.525311 | 8.3:-15502396 | None:intergenic |
| AGGTGGAGAGCAGACAAAGA+TGG | 0.531180 | 8.3:+15505882 | MS.gene064281:CDS |
| GTGGCAGTAGCATGCAAGAA+AGG | 0.532651 | 8.3:+15498178 | MS.gene064281:CDS |
| TGCTGCAATTCAAGAGGTCA+TGG | 0.541118 | 8.3:+15504962 | MS.gene064281:CDS |
| AATTATATATTGGTTTCTGA+AGG | 0.541740 | 8.3:-15501792 | None:intergenic |
| CTGCTCTCCACCTTTCACAA+TGG | 0.543192 | 8.3:-15505872 | None:intergenic |
| CCCTAGAGGCTTCAAGCAGT+GGG | 0.545041 | 8.3:-15503230 | None:intergenic |
| ATTAATGGGAAGGTGTATCA+AGG | 0.550038 | 8.3:+15505002 | MS.gene064281:CDS |
| AATTTGAATGGACATAGCAT+TGG | 0.550755 | 8.3:+15505817 | MS.gene064281:CDS |
| GATGTGCGCCTTTGTGATGT+TGG | 0.550983 | 8.3:+15504939 | MS.gene064281:CDS |
| ACCCACTGCTTGAAGCCTCT+AGG | 0.553042 | 8.3:+15503229 | MS.gene064281:CDS |
| TCCGTGTATTACCATCTATG+TGG | 0.557903 | 8.3:-15503060 | None:intergenic |
| AGAGCAGACAAAGATGGAAG+AGG | 0.562137 | 8.3:+15505888 | MS.gene064281:CDS |
| ATCAGAGGAGAAGAGAGAGC+TGG | 0.563096 | 8.3:+15501765 | MS.gene064281:CDS |
| AGCAGACAAAGATGGAAGAG+GGG | 0.576340 | 8.3:+15505890 | MS.gene064281:CDS |
| GACAAGGAGCTTATGGAGCA+AGG | 0.578268 | 8.3:+15498156 | MS.gene064281:CDS |
| CCTTCTGGAAAATCTCCAGA+TGG | 0.580900 | 8.3:-15500814 | None:intergenic |
| GGCCGCTATCAAATTCATGC+TGG | 0.582517 | 8.3:+15505838 | MS.gene064281:CDS |
| GCTAATAGTTGCTTAGCTCT+GGG | 0.588420 | 8.3:-15506112 | None:intergenic |
| GTCCGACTTATGTGAAACAT+TGG | 0.589857 | 8.3:+15502394 | MS.gene064281:CDS |
| TCTGTTCCCATTGTGAAAGG+TGG | 0.590439 | 8.3:+15505865 | MS.gene064281:CDS |
| CAGTCTTATCTCCAGAATTG+GGG | 0.590689 | 8.3:-15502997 | None:intergenic |
| CCGTGTATTACCATCTATGT+GGG | 0.591599 | 8.3:-15503059 | None:intergenic |
| TGAGGTTGAGATTAATGGGA+AGG | 0.591975 | 8.3:+15504992 | MS.gene064281:CDS |
| CTCTGATATTAGCTTACGAA+CGG | 0.593227 | 8.3:-15502423 | None:intergenic |
| AGGTTATGTACGAGAAGACC+TGG | 0.594209 | 8.3:+15506036 | MS.gene064281:CDS |
| CGTATAGGTTGCTTCCCTAG+AGG | 0.600451 | 8.3:-15503244 | None:intergenic |
| AGGACTTGCAGAGGAAGACA+AGG | 0.601051 | 8.3:+15498140 | MS.gene064281:CDS |
| TCGCCTACAAAAGGCCAAAG+TGG | 0.603161 | 8.3:-15506155 | None:intergenic |
| TAGGTTCGGAAATATATGAA+AGG | 0.605556 | 8.3:+15502347 | MS.gene064281:intron |
| GCAGACAAAGATGGAAGAGG+GGG | 0.611179 | 8.3:+15505891 | MS.gene064281:CDS |
| TACCAGCATGAATTTGATAG+CGG | 0.613927 | 8.3:-15505840 | None:intergenic |
| AAACATTGGGTTGAACGCCA+CGG | 0.621240 | 8.3:-15503205 | None:intergenic |
| CGTAAGCTAATATCAGAGGA+TGG | 0.621543 | 8.3:+15502428 | MS.gene064281:CDS |
| TCAAGAACAGGAATTGATGG+TGG | 0.622681 | 8.3:-15500784 | None:intergenic |
| CGTTCGTAAGCTAATATCAG+AGG | 0.625420 | 8.3:+15502424 | MS.gene064281:CDS |
| ATTATGGAGCAAGGAAGACA+AGG | 0.630410 | 8.3:+15498120 | MS.gene064281:CDS |
| CTTCTGGAAAATCTCCAGAT+GGG | 0.635992 | 8.3:-15500813 | None:intergenic |
| AGGCAAGGACTTATTGAGCA+AGG | 0.642985 | 8.3:+15498198 | MS.gene064281:CDS |
| AGGAAGACAAGGACTTGCAG+AGG | 0.645505 | 8.3:+15498131 | MS.gene064281:CDS |
| AGGCGATATTTAGATCGCCT+AGG | 0.650391 | 8.3:+15506172 | MS.gene064281:CDS |
| AAATCTGTTCCCATTGTGAA+AGG | 0.658720 | 8.3:+15505862 | MS.gene064281:CDS |
| AGTAGCATGCAAGAAAGGCA+AGG | 0.663657 | 8.3:+15498183 | MS.gene064281:CDS |
| AGTCTTATCTCCAGAATTGG+GGG | 0.670396 | 8.3:-15502996 | None:intergenic |
| CTTATGGAGAACAACATCAG+AGG | 0.685730 | 8.3:+15501750 | MS.gene064281:CDS |
| TGTTGGTGCTGCAATTCAAG+AGG | 0.710293 | 8.3:+15504956 | MS.gene064281:CDS |
| TTGCAGCACCAACATCACAA+AGG | 0.716293 | 8.3:-15504947 | None:intergenic |
| AAGGAGCTTATGGAGCAAGG+TGG | 0.732569 | 8.3:+15498159 | MS.gene064281:CDS |
| TTAGCTCTGGGCAATCTCAG+CGG | 0.739474 | 8.3:-15506100 | None:intergenic |
| GGAAGAATAAAGGACCCGTG+AGG | 0.767051 | 8.3:+15500752 | MS.gene064281:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 15495701 | 15506249 | 15495701 | ID=MS.gene064281 |
| chr8.3 | mRNA | 15495701 | 15506249 | 15495701 | ID=MS.gene064281.t1;Parent=MS.gene064281 |
| chr8.3 | exon | 15495701 | 15495755 | 15495701 | ID=MS.gene064281.t1.exon1;Parent=MS.gene064281.t1 |
| chr8.3 | CDS | 15495701 | 15495755 | 15495701 | ID=cds.MS.gene064281.t1;Parent=MS.gene064281.t1 |
| chr8.3 | exon | 15497576 | 15497597 | 15497576 | ID=MS.gene064281.t1.exon2;Parent=MS.gene064281.t1 |
| chr8.3 | CDS | 15497576 | 15497597 | 15497576 | ID=cds.MS.gene064281.t1;Parent=MS.gene064281.t1 |
| chr8.3 | exon | 15498107 | 15498219 | 15498107 | ID=MS.gene064281.t1.exon3;Parent=MS.gene064281.t1 |
| chr8.3 | CDS | 15498107 | 15498219 | 15498107 | ID=cds.MS.gene064281.t1;Parent=MS.gene064281.t1 |
| chr8.3 | exon | 15500633 | 15500669 | 15500633 | ID=MS.gene064281.t1.exon4;Parent=MS.gene064281.t1 |
| chr8.3 | CDS | 15500633 | 15500669 | 15500633 | ID=cds.MS.gene064281.t1;Parent=MS.gene064281.t1 |
| chr8.3 | exon | 15500753 | 15500863 | 15500753 | ID=MS.gene064281.t1.exon5;Parent=MS.gene064281.t1 |
| chr8.3 | CDS | 15500753 | 15500863 | 15500753 | ID=cds.MS.gene064281.t1;Parent=MS.gene064281.t1 |
| chr8.3 | exon | 15501747 | 15501846 | 15501747 | ID=MS.gene064281.t1.exon6;Parent=MS.gene064281.t1 |
| chr8.3 | CDS | 15501747 | 15501846 | 15501747 | ID=cds.MS.gene064281.t1;Parent=MS.gene064281.t1 |
| chr8.3 | exon | 15502350 | 15502453 | 15502350 | ID=MS.gene064281.t1.exon7;Parent=MS.gene064281.t1 |
| chr8.3 | CDS | 15502350 | 15502453 | 15502350 | ID=cds.MS.gene064281.t1;Parent=MS.gene064281.t1 |
| chr8.3 | exon | 15502979 | 15503070 | 15502979 | ID=MS.gene064281.t1.exon8;Parent=MS.gene064281.t1 |
| chr8.3 | CDS | 15502979 | 15503070 | 15502979 | ID=cds.MS.gene064281.t1;Parent=MS.gene064281.t1 |
| chr8.3 | exon | 15503181 | 15503275 | 15503181 | ID=MS.gene064281.t1.exon9;Parent=MS.gene064281.t1 |
| chr8.3 | CDS | 15503181 | 15503275 | 15503181 | ID=cds.MS.gene064281.t1;Parent=MS.gene064281.t1 |
| chr8.3 | exon | 15504927 | 15505023 | 15504927 | ID=MS.gene064281.t1.exon10;Parent=MS.gene064281.t1 |
| chr8.3 | CDS | 15504927 | 15505023 | 15504927 | ID=cds.MS.gene064281.t1;Parent=MS.gene064281.t1 |
| chr8.3 | exon | 15505803 | 15505946 | 15505803 | ID=MS.gene064281.t1.exon11;Parent=MS.gene064281.t1 |
| chr8.3 | CDS | 15505803 | 15505946 | 15505803 | ID=cds.MS.gene064281.t1;Parent=MS.gene064281.t1 |
| chr8.3 | exon | 15506032 | 15506249 | 15506032 | ID=MS.gene064281.t1.exon12;Parent=MS.gene064281.t1 |
| chr8.3 | CDS | 15506032 | 15506249 | 15506032 | ID=cds.MS.gene064281.t1;Parent=MS.gene064281.t1 |
| Gene Sequence |
| Protein sequence |