Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93798.t1 | XP_013457939.1 | 98.1 | 428 | 5 | 1 | 1 | 428 | 1 | 425 | 6.80E-228 | 799.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93798.t1 | Q56Y85 | 92.5 | 361 | 27 | 0 | 68 | 428 | 79 | 439 | 5.9e-204 | 711.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93798.t1 | A0A072V1I1 | 98.1 | 428 | 5 | 1 | 1 | 428 | 1 | 425 | 4.9e-228 | 799.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93798 | MS.gene48242 | PPI |
| MS.gene93798 | MS.gene48240 | PPI |
| MS.gene93798 | MS.gene91353 | PPI |
| MS.gene93798 | MS.gene48237 | PPI |
| MS.gene93798 | MS.gene93411 | PPI |
| MS.gene93798 | MS.gene033096 | PPI |
| MS.gene93798 | MS.gene063366 | PPI |
| MS.gene93798 | MS.gene064281 | PPI |
| MS.gene93798 | MS.gene060216 | PPI |
| MS.gene93798 | MS.gene044411 | PPI |
| MS.gene044411 | MS.gene93798 | PPI |
| MS.gene93798 | MS.gene039110 | PPI |
| MS.gene066163 | MS.gene93798 | PPI |
| MS.gene040581 | MS.gene93798 | PPI |
| MS.gene93798 | MS.gene63721 | PPI |
| MS.gene93798 | MS.gene58403 | PPI |
| MS.gene93798 | MS.gene059218 | PPI |
| MS.gene93798 | MS.gene48925 | PPI |
| MS.gene93798 | MS.gene45850 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93798.t1 | MTR_1g105940 | 98.131 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 0.0 | 876 |
| MS.gene93798.t1 | MTR_4g109100 | 98.598 | 428 | 3 | 1 | 1 | 428 | 1 | 425 | 0.0 | 874 |
| MS.gene93798.t1 | MTR_1g105940 | 98.806 | 335 | 4 | 0 | 94 | 428 | 10 | 344 | 0.0 | 697 |
| MS.gene93798.t1 | MTR_2g078290 | 25.000 | 332 | 229 | 7 | 104 | 423 | 7 | 330 | 9.72e-29 | 116 |
| MS.gene93798.t1 | MTR_7g069390 | 25.602 | 332 | 213 | 8 | 104 | 416 | 7 | 323 | 1.36e-27 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93798.t1 | AT3G59990 | 92.287 | 363 | 28 | 0 | 66 | 428 | 77 | 439 | 0.0 | 729 |
| MS.gene93798.t1 | AT3G59990 | 92.287 | 363 | 28 | 0 | 66 | 428 | 77 | 439 | 0.0 | 729 |
| MS.gene93798.t1 | AT3G59990 | 92.287 | 363 | 28 | 0 | 66 | 428 | 77 | 439 | 0.0 | 729 |
| MS.gene93798.t1 | AT3G59990 | 92.287 | 363 | 28 | 0 | 66 | 428 | 77 | 439 | 0.0 | 729 |
| MS.gene93798.t1 | AT2G44180 | 90.110 | 364 | 36 | 0 | 65 | 428 | 78 | 441 | 0.0 | 712 |
| MS.gene93798.t1 | AT2G44180 | 90.966 | 321 | 29 | 0 | 108 | 428 | 1 | 321 | 0.0 | 625 |
| MS.gene93798.t1 | AT3G51800 | 26.549 | 339 | 215 | 8 | 104 | 423 | 8 | 331 | 2.11e-29 | 118 |
| MS.gene93798.t1 | AT3G51800 | 26.549 | 339 | 215 | 8 | 104 | 423 | 8 | 331 | 3.06e-29 | 118 |
| MS.gene93798.t1 | AT3G51800 | 26.149 | 348 | 214 | 9 | 104 | 423 | 8 | 340 | 6.03e-27 | 112 |
Find 111 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGTAGTGGCTGCATTCC+AGG | 0.242992 | 1.2:-78742024 | None:intergenic |
| TCCTATGAGGTTGAGATTAA+TGG | 0.247977 | 1.2:+78740955 | MS.gene93798:CDS |
| CGACGAACTGAATTATATAT+TGG | 0.250887 | 1.2:-78737755 | None:intergenic |
| ATTTCTATGCTAGTAACTTA+TGG | 0.289934 | 1.2:+78737687 | MS.gene93798:intron |
| AACAGTCTTATCTCCGGAAT+TGG | 0.313628 | 1.2:-78739033 | None:intergenic |
| GGAAAGCAATGCCTGCTTGC+AGG | 0.317202 | 1.2:-78738472 | None:intergenic |
| TACTGCTGAATATCACCTTC+TGG | 0.326837 | 1.2:-78736543 | None:intergenic |
| CCACAGGGTGCTCTTTGAAT+TGG | 0.339865 | 1.2:+78738495 | MS.gene93798:CDS |
| GTTCTTGATCTTTACCCATC+TGG | 0.344235 | 1.2:+78736513 | MS.gene93798:CDS |
| AGCAACCTATACGGGTATTA+AGG | 0.345844 | 1.2:+78739289 | MS.gene93798:CDS |
| TTCTATGCAATTGAAACCTT+CGG | 0.354960 | 1.2:+78741886 | MS.gene93798:CDS |
| CTCTAGGGAAGCAACCTATA+CGG | 0.355384 | 1.2:+78739280 | MS.gene93798:CDS |
| AGGAGAGACTAAATACTTAA+TGG | 0.355741 | 1.2:+78742162 | MS.gene93798:CDS |
| TCATTGCAGTTAAGAGTATA+CGG | 0.356486 | 1.2:+78741764 | MS.gene93798:intron |
| GTGTGATGCTGGCATTGTTC+AGG | 0.364503 | 1.2:+78742198 | MS.gene93798:CDS |
| ACAGTCTTATCTCCGGAATT+GGG | 0.370525 | 1.2:-78739032 | None:intergenic |
| GGTGGATCTGTCTGCTCAAC+GGG | 0.375413 | 1.2:-78736480 | None:intergenic |
| AAGTCGGACATCAGCATTCC+AGG | 0.376276 | 1.2:-78738401 | None:intergenic |
| TTTCCAGGGTTGCTGCTCAC+TGG | 0.382312 | 1.2:+78739006 | MS.gene93798:intron |
| TCTATGCAATTGAAACCTTC+GGG | 0.389467 | 1.2:+78741887 | MS.gene93798:CDS |
| GATGTGATGAAGTTGGATTT+TGG | 0.396243 | 1.2:+78739068 | MS.gene93798:CDS |
| AAGTACCTTAATACCCGTAT+AGG | 0.400679 | 1.2:-78739294 | None:intergenic |
| CCTATGAGGTTGAGATTAAT+GGG | 0.409711 | 1.2:+78740956 | MS.gene93798:CDS |
| TGCTCTCCACCTTTCACAAT+GGG | 0.411459 | 1.2:-78741841 | None:intergenic |
| GATATAACTTCTTTGCATGT+TGG | 0.419203 | 1.2:-78742577 | None:intergenic |
| AGATCAAGAACAGGAATTGA+TGG | 0.426850 | 1.2:-78736501 | None:intergenic |
| ATTGAAACCTTCGGGTCAAC+TGG | 0.432794 | 1.2:+78741895 | MS.gene93798:CDS |
| GCAGGCATTGCTTTCCCCAC+AGG | 0.445164 | 1.2:+78738479 | MS.gene93798:CDS |
| CCCATTAATCTCAACCTCAT+AGG | 0.455878 | 1.2:-78740956 | None:intergenic |
| GCTTCCTTTCACGTCACATA+GGG | 0.468088 | 1.2:-78742518 | None:intergenic |
| CCCACTGCTTGAAGCCTCTA+GGG | 0.469534 | 1.2:+78739265 | MS.gene93798:CDS |
| TGGCTTACCATTTAGGAAGC+TGG | 0.470912 | 1.2:+78740880 | MS.gene93798:intron |
| TGCAAAGAAGTTATATCAAA+GGG | 0.471006 | 1.2:+78742583 | MS.gene93798:CDS |
| ACGTCACATAGGGGAGGATA+AGG | 0.475041 | 1.2:-78742508 | None:intergenic |
| CAAGCAGTGGGTCAAACATC+GGG | 0.475650 | 1.2:-78739253 | None:intergenic |
| ATCTAAATATCGCCTACAAA+AGG | 0.477272 | 1.2:-78742134 | None:intergenic |
| CGCTGAGCTTTCTCTATCAC+CGG | 0.480891 | 1.2:+78732998 | MS.gene93798:CDS |
| AAATGTTATGTTCAGGGAAA+GGG | 0.481107 | 1.2:+78741987 | MS.gene93798:intron |
| CCTTCTTCTACAAGAGTTGG+TGG | 0.482897 | 1.2:-78732972 | None:intergenic |
| TTAAGTATTTAGTCTCTCCT+AGG | 0.484045 | 1.2:-78742159 | None:intergenic |
| ATGAAAGGCATTATAAAGCC+TGG | 0.486937 | 1.2:+78738383 | MS.gene93798:CDS |
| AAGAGTATACGGAATTTGAA+TGG | 0.489615 | 1.2:+78741775 | MS.gene93798:CDS |
| AGCAGCAGAAGTTCATCGTC+AGG | 0.491602 | 1.2:+78737778 | MS.gene93798:CDS |
| TAACAAGAACTTCTCCACTT+TGG | 0.495871 | 1.2:+78742111 | MS.gene93798:CDS |
| TCCCTAGAGGCTTCAAGCAG+TGG | 0.496490 | 1.2:-78739266 | None:intergenic |
| GTATGATGATGTGATGAAGT+TGG | 0.503347 | 1.2:+78739061 | MS.gene93798:CDS |
| GATGGGTAAAGATCAAGAAC+AGG | 0.505511 | 1.2:-78736510 | None:intergenic |
| CTTTGCATGTTGGTCGGAGT+AGG | 0.507622 | 1.2:-78742567 | None:intergenic |
| TCTAGGGAAGCAACCTATAC+GGG | 0.508969 | 1.2:+78739281 | MS.gene93798:CDS |
| TTGAAGAACTTGTGTGATGC+TGG | 0.511073 | 1.2:+78742187 | MS.gene93798:CDS |
| GAGCAGACAAAGATGGAAGA+GGG | 0.512947 | 1.2:+78741859 | MS.gene93798:CDS |
| ATGCAAAGAAGTTATATCAA+AGG | 0.517146 | 1.2:+78742582 | MS.gene93798:CDS |
| CTCCAATGTTTCACATAAGT+CGG | 0.525311 | 1.2:-78738417 | None:intergenic |
| CAGGCATTGCTTTCCCCACA+GGG | 0.526979 | 1.2:+78738480 | MS.gene93798:CDS |
| AGGTGGAGAGCAGACAAAGA+TGG | 0.531180 | 1.2:+78741852 | MS.gene93798:CDS |
| CAGTCTTATCTCCGGAATTG+GGG | 0.534987 | 1.2:-78739031 | None:intergenic |
| TCAGAGGATGGCCTGCAAGC+AGG | 0.539062 | 1.2:+78738461 | MS.gene93798:CDS |
| TGCTGCAATTCAAGAGGTCA+TGG | 0.541118 | 1.2:+78740930 | MS.gene93798:CDS |
| AATTATATATTGGTTTCTGA+AGG | 0.541740 | 1.2:-78737745 | None:intergenic |
| CTGCTCTCCACCTTTCACAA+TGG | 0.543192 | 1.2:-78741842 | None:intergenic |
| CCCTAGAGGCTTCAAGCAGT+GGG | 0.545041 | 1.2:-78739265 | None:intergenic |
| AGCTTCCTTTCACGTCACAT+AGG | 0.546614 | 1.2:-78742519 | None:intergenic |
| TGGTGGATCTGTCTGCTCAA+CGG | 0.548615 | 1.2:-78736481 | None:intergenic |
| ATTAATGGGAAGGTGTATCA+AGG | 0.550038 | 1.2:+78740970 | MS.gene93798:CDS |
| AATTTGAATGGACATAGCAT+TGG | 0.550755 | 1.2:+78741787 | MS.gene93798:CDS |
| GATGTGCGCCTTTGTGATGT+TGG | 0.550983 | 1.2:+78740907 | MS.gene93798:CDS |
| ACCCACTGCTTGAAGCCTCT+AGG | 0.553042 | 1.2:+78739264 | MS.gene93798:CDS |
| CCACCAACTCTTGTAGAAGA+AGG | 0.555465 | 1.2:+78732972 | MS.gene93798:CDS |
| TCAAGCAGTGGGTCAAACAT+CGG | 0.558664 | 1.2:-78739254 | None:intergenic |
| TCCATGTATTACCATCTATG+TGG | 0.559923 | 1.2:-78739094 | None:intergenic |
| CTGAAGAACAGTCTTATCTC+CGG | 0.560346 | 1.2:-78739039 | None:intergenic |
| TAACTTCTTTGCATGTTGGT+CGG | 0.562102 | 1.2:-78742573 | None:intergenic |
| AGAGCAGACAAAGATGGAAG+AGG | 0.562137 | 1.2:+78741858 | MS.gene93798:CDS |
| ATCAGAGGAGAAGAGAGAGC+TGG | 0.563096 | 1.2:+78737718 | MS.gene93798:CDS |
| ACTCCTTCTTCTACAAGAGT+TGG | 0.563575 | 1.2:-78732975 | None:intergenic |
| GCTAATAGTTGCTTAGCTCT+AGG | 0.564078 | 1.2:-78742082 | None:intergenic |
| ACAAGAAAATGGAGCTCAAG+AGG | 0.566879 | 1.2:+78732947 | MS.gene93798:CDS |
| AGAGGTCATGGAGTCCTATG+AGG | 0.571277 | 1.2:+78740942 | MS.gene93798:CDS |
| AGCAGACAAAGATGGAAGAG+GGG | 0.576340 | 1.2:+78741860 | MS.gene93798:CDS |
| CCTTCTGGAAAATCTCCAGA+TGG | 0.580900 | 1.2:-78736528 | None:intergenic |
| GGCCGCTATCAAATTCATGC+TGG | 0.582517 | 1.2:+78741808 | MS.gene93798:CDS |
| CCTCCCCTATGTGACGTGAA+AGG | 0.585633 | 1.2:+78742514 | MS.gene93798:CDS |
| GTCCGACTTATGTGAAACAT+TGG | 0.589857 | 1.2:+78738415 | MS.gene93798:CDS |
| TCTGTTCCCATTGTGAAAGG+TGG | 0.590439 | 1.2:+78741835 | MS.gene93798:CDS |
| TCTGTGGTCAGGAAGAAGAA+AGG | 0.592872 | 1.2:+78736456 | MS.gene93798:intron |
| TAGGTTCGGAAATATATGAA+AGG | 0.598735 | 1.2:+78738368 | MS.gene93798:intron |
| ACTATTACCAGTTGACCCGA+AGG | 0.599081 | 1.2:-78741902 | None:intergenic |
| CGTATAGGTTGCTTCCCTAG+AGG | 0.600451 | 1.2:-78739279 | None:intergenic |
| TGAGGTTGAGATTAATGGGA+AGG | 0.601845 | 1.2:+78740960 | MS.gene93798:CDS |
| AGGGTATGTACGAGAAGACC+TGG | 0.602085 | 1.2:+78742006 | MS.gene93798:CDS |
| CCATGTATTACCATCTATGT+GGG | 0.603110 | 1.2:-78739093 | None:intergenic |
| TCGCCTACAAAAGGCCAAAG+TGG | 0.603161 | 1.2:-78742125 | None:intergenic |
| GCAGACAAAGATGGAAGAGG+GGG | 0.611179 | 1.2:+78741861 | MS.gene93798:CDS |
| CAATTCAAAGAGCACCCTGT+GGG | 0.611392 | 1.2:-78738494 | None:intergenic |
| TACCAGCATGAATTTGATAG+CGG | 0.613927 | 1.2:-78741810 | None:intergenic |
| TCAAGAACAGGAATTGATGG+TGG | 0.622681 | 1.2:-78736498 | None:intergenic |
| CTTCTGGAAAATCTCCAGAT+GGG | 0.635992 | 1.2:-78736527 | None:intergenic |
| CGTAAGCTAATATCAGAGGA+TGG | 0.640250 | 1.2:+78738449 | MS.gene93798:CDS |
| AGTCTTATCTCCGGAATTGG+GGG | 0.643385 | 1.2:-78739030 | None:intergenic |
| CCTTTCACGTCACATAGGGG+AGG | 0.648561 | 1.2:-78742514 | None:intergenic |
| AGGCGATATTTAGATCGCCT+AGG | 0.650391 | 1.2:+78742142 | MS.gene93798:CDS |
| CTTCCTTTCACGTCACATAG+GGG | 0.650914 | 1.2:-78742517 | None:intergenic |
| AAACATCGGGTTGAACGCCA+CGG | 0.651604 | 1.2:-78739240 | None:intergenic |
| TGTTCGTAAGCTAATATCAG+AGG | 0.651780 | 1.2:+78738445 | MS.gene93798:CDS |
| AAATCTGTTCCCATTGTGAA+AGG | 0.658720 | 1.2:+78741832 | MS.gene93798:CDS |
| CTTATGGAGAACAACATCAG+AGG | 0.685730 | 1.2:+78737703 | MS.gene93798:CDS |
| AATTCAAAGAGCACCCTGTG+GGG | 0.698344 | 1.2:-78738493 | None:intergenic |
| TGTTGGTGCTGCAATTCAAG+AGG | 0.710293 | 1.2:+78740924 | MS.gene93798:CDS |
| TTGCAGCACCAACATCACAA+AGG | 0.716293 | 1.2:-78740915 | None:intergenic |
| CCAATTCAAAGAGCACCCTG+TGG | 0.729787 | 1.2:-78738495 | None:intergenic |
| TTAGCTCTAGGCAATCTCAG+CGG | 0.772254 | 1.2:-78742070 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 78732912 | 78742618 | 78732912 | ID=MS.gene93798 |
| chr1.2 | mRNA | 78732912 | 78742618 | 78732912 | ID=MS.gene93798.t1;Parent=MS.gene93798 |
| chr1.2 | exon | 78732912 | 78733050 | 78732912 | ID=MS.gene93798.t1.exon1;Parent=MS.gene93798.t1 |
| chr1.2 | CDS | 78732912 | 78733050 | 78732912 | ID=cds.MS.gene93798.t1;Parent=MS.gene93798.t1 |
| chr1.2 | exon | 78736347 | 78736383 | 78736347 | ID=MS.gene93798.t1.exon2;Parent=MS.gene93798.t1 |
| chr1.2 | CDS | 78736347 | 78736383 | 78736347 | ID=cds.MS.gene93798.t1;Parent=MS.gene93798.t1 |
| chr1.2 | exon | 78736467 | 78736574 | 78736467 | ID=MS.gene93798.t1.exon3;Parent=MS.gene93798.t1 |
| chr1.2 | CDS | 78736467 | 78736574 | 78736467 | ID=cds.MS.gene93798.t1;Parent=MS.gene93798.t1 |
| chr1.2 | exon | 78737700 | 78737799 | 78737700 | ID=MS.gene93798.t1.exon4;Parent=MS.gene93798.t1 |
| chr1.2 | CDS | 78737700 | 78737799 | 78737700 | ID=cds.MS.gene93798.t1;Parent=MS.gene93798.t1 |
| chr1.2 | exon | 78738371 | 78738516 | 78738371 | ID=MS.gene93798.t1.exon5;Parent=MS.gene93798.t1 |
| chr1.2 | CDS | 78738371 | 78738516 | 78738371 | ID=cds.MS.gene93798.t1;Parent=MS.gene93798.t1 |
| chr1.2 | exon | 78739013 | 78739104 | 78739013 | ID=MS.gene93798.t1.exon6;Parent=MS.gene93798.t1 |
| chr1.2 | CDS | 78739013 | 78739104 | 78739013 | ID=cds.MS.gene93798.t1;Parent=MS.gene93798.t1 |
| chr1.2 | exon | 78739216 | 78739310 | 78739216 | ID=MS.gene93798.t1.exon7;Parent=MS.gene93798.t1 |
| chr1.2 | CDS | 78739216 | 78739310 | 78739216 | ID=cds.MS.gene93798.t1;Parent=MS.gene93798.t1 |
| chr1.2 | exon | 78740895 | 78740991 | 78740895 | ID=MS.gene93798.t1.exon8;Parent=MS.gene93798.t1 |
| chr1.2 | CDS | 78740895 | 78740991 | 78740895 | ID=cds.MS.gene93798.t1;Parent=MS.gene93798.t1 |
| chr1.2 | exon | 78741773 | 78741916 | 78741773 | ID=MS.gene93798.t1.exon9;Parent=MS.gene93798.t1 |
| chr1.2 | CDS | 78741773 | 78741916 | 78741773 | ID=cds.MS.gene93798.t1;Parent=MS.gene93798.t1 |
| chr1.2 | exon | 78742002 | 78742219 | 78742002 | ID=MS.gene93798.t1.exon10;Parent=MS.gene93798.t1 |
| chr1.2 | CDS | 78742002 | 78742219 | 78742002 | ID=cds.MS.gene93798.t1;Parent=MS.gene93798.t1 |
| chr1.2 | exon | 78742508 | 78742618 | 78742508 | ID=MS.gene93798.t1.exon11;Parent=MS.gene93798.t1 |
| chr1.2 | CDS | 78742508 | 78742618 | 78742508 | ID=cds.MS.gene93798.t1;Parent=MS.gene93798.t1 |
| Gene Sequence |
| Protein sequence |