Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049480.t1 | KEH34413.1 | 91.2 | 181 | 16 | 0 | 1 | 181 | 275 | 455 | 3.70E-78 | 301.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049480.t1 | F4I9E1 | 38.3 | 154 | 91 | 3 | 30 | 181 | 347 | 498 | 1.3e-20 | 101.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049480.t1 | A0A072UZ85 | 91.2 | 181 | 16 | 0 | 1 | 181 | 275 | 455 | 2.6e-78 | 301.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049480 | MS.gene06475 | 0.807086 | 6.00E-50 | -1.69E-46 |
| MS.gene049480 | MS.gene071546 | 0.810691 | 1.02E-50 | -1.69E-46 |
| MS.gene049480 | MS.gene20556 | 0.805213 | 1.49E-49 | -1.69E-46 |
| MS.gene049480 | MS.gene22386 | 0.803096 | 4.10E-49 | -1.69E-46 |
| MS.gene049480 | MS.gene25354 | 0.802661 | 5.05E-49 | -1.69E-46 |
| MS.gene049480 | MS.gene26111 | 0.816435 | 5.54E-52 | -1.69E-46 |
| MS.gene049480 | MS.gene28167 | 0.816459 | 5.47E-52 | -1.69E-46 |
| MS.gene049480 | MS.gene28693 | 0.823375 | 1.43E-53 | -1.69E-46 |
| MS.gene049480 | MS.gene28694 | 0.81868 | 1.73E-52 | -1.69E-46 |
| MS.gene049480 | MS.gene31671 | 0.801425 | 9.06E-49 | -1.69E-46 |
| MS.gene049480 | MS.gene32713 | 0.806511 | 7.94E-50 | -1.69E-46 |
| MS.gene049480 | MS.gene34800 | 0.806183 | 9.31E-50 | -1.69E-46 |
| MS.gene049480 | MS.gene40169 | 0.824133 | 9.52E-54 | -1.69E-46 |
| MS.gene049480 | MS.gene42747 | 0.801048 | 1.08E-48 | -1.69E-46 |
| MS.gene049480 | MS.gene51922 | 0.812345 | 4.44E-51 | -1.69E-46 |
| MS.gene049480 | MS.gene52283 | 0.807955 | 3.93E-50 | -1.69E-46 |
| MS.gene049480 | MS.gene56177 | 0.818563 | 1.84E-52 | -1.69E-46 |
| MS.gene049480 | MS.gene59980 | 0.81167 | 6.23E-51 | -1.69E-46 |
| MS.gene049480 | MS.gene62091 | 0.80253 | 5.37E-49 | -1.69E-46 |
| MS.gene049480 | MS.gene63115 | 0.818193 | 2.23E-52 | -1.69E-46 |
| MS.gene049480 | MS.gene64994 | 0.833024 | 6.76E-56 | -1.69E-46 |
| MS.gene049480 | MS.gene71664 | 0.816953 | 4.24E-52 | -1.69E-46 |
| MS.gene049480 | MS.gene77339 | 0.800166 | 1.64E-48 | -1.69E-46 |
| MS.gene049480 | MS.gene78531 | 0.801252 | 9.83E-49 | -1.69E-46 |
| MS.gene049480 | MS.gene79020 | 0.809943 | 1.47E-50 | -1.69E-46 |
| MS.gene049480 | MS.gene79482 | 0.804753 | 1.86E-49 | -1.69E-46 |
| MS.gene049480 | MS.gene81859 | 0.802736 | 4.87E-49 | -1.69E-46 |
| MS.gene049480 | MS.gene84200 | 0.80955 | 1.79E-50 | -1.69E-46 |
| MS.gene049480 | MS.gene92638 | 0.801652 | 8.14E-49 | -1.69E-46 |
| MS.gene049480 | MS.gene97081 | 0.80454 | 2.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049480.t1 | MTR_3g466110 | 91.160 | 181 | 16 | 0 | 1 | 181 | 275 | 455 | 1.17e-102 | 305 |
| MS.gene049480.t1 | MTR_3g466040 | 81.868 | 182 | 32 | 1 | 1 | 181 | 275 | 456 | 3.40e-90 | 274 |
| MS.gene049480.t1 | MTR_8g071920 | 40.212 | 189 | 102 | 5 | 1 | 181 | 349 | 534 | 6.02e-32 | 122 |
| MS.gene049480.t1 | MTR_5g026350 | 40.719 | 167 | 92 | 4 | 17 | 181 | 330 | 491 | 2.41e-30 | 117 |
| MS.gene049480.t1 | MTR_7g083660 | 35.610 | 205 | 106 | 6 | 3 | 182 | 283 | 486 | 1.36e-28 | 112 |
| MS.gene049480.t1 | MTR_2g450710 | 31.088 | 193 | 127 | 4 | 2 | 193 | 307 | 494 | 4.49e-16 | 76.3 |
| MS.gene049480.t1 | MTR_4g073690 | 28.144 | 167 | 119 | 1 | 3 | 168 | 293 | 459 | 1.96e-15 | 74.3 |
| MS.gene049480.t1 | MTR_4g116210 | 32.824 | 131 | 88 | 0 | 38 | 168 | 349 | 479 | 5.11e-14 | 70.5 |
| MS.gene049480.t1 | MTR_5g022380 | 29.927 | 137 | 96 | 0 | 30 | 166 | 309 | 445 | 4.24e-13 | 67.8 |
| MS.gene049480.t1 | MTR_5g022380 | 29.927 | 137 | 96 | 0 | 30 | 166 | 199 | 335 | 7.39e-13 | 66.6 |
| MS.gene049480.t1 | MTR_7g029015 | 28.467 | 137 | 98 | 0 | 30 | 166 | 346 | 482 | 2.08e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049480.t1 | AT2G30300 | 52.866 | 157 | 73 | 1 | 26 | 181 | 281 | 437 | 1.93e-48 | 165 |
| MS.gene049480.t1 | AT4G19450 | 38.830 | 188 | 102 | 5 | 4 | 181 | 309 | 493 | 9.26e-31 | 118 |
| MS.gene049480.t1 | AT5G45275 | 40.571 | 175 | 94 | 5 | 16 | 181 | 321 | 494 | 1.86e-29 | 114 |
| MS.gene049480.t1 | AT3G01630 | 36.313 | 179 | 104 | 4 | 10 | 181 | 304 | 479 | 1.48e-27 | 109 |
| MS.gene049480.t1 | AT3G01630 | 36.313 | 179 | 104 | 4 | 10 | 181 | 322 | 497 | 1.70e-27 | 109 |
| MS.gene049480.t1 | AT1G31470 | 34.239 | 184 | 115 | 4 | 2 | 181 | 317 | 498 | 1.48e-26 | 106 |
| MS.gene049480.t1 | AT4G19450 | 43.810 | 105 | 48 | 3 | 4 | 99 | 309 | 411 | 8.88e-19 | 84.0 |
| MS.gene049480.t1 | AT1G80530 | 29.050 | 179 | 125 | 2 | 3 | 180 | 306 | 483 | 1.68e-15 | 74.7 |
| MS.gene049480.t1 | AT4G34950 | 27.322 | 183 | 130 | 1 | 2 | 181 | 307 | 489 | 4.16e-15 | 73.6 |
| MS.gene049480.t1 | AT2G16660 | 30.496 | 141 | 98 | 0 | 41 | 181 | 328 | 468 | 6.07e-15 | 73.2 |
| MS.gene049480.t1 | AT1G74780 | 28.205 | 156 | 107 | 2 | 12 | 165 | 296 | 448 | 3.73e-11 | 62.0 |
Find 37 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGAGAAGAATAAATTTC+TGG | 0.186844 | 3.2:+56770195 | MS.gene049480:CDS |
| GTGTCTTTGTCTTCTGCTTT+TGG | 0.192683 | 3.2:+56770323 | MS.gene049480:CDS |
| TTGTTGTCTTGGAACTTTAT+TGG | 0.202596 | 3.2:+56771444 | MS.gene049480:CDS |
| TTTGGTGTTTCTTAACAATT+TGG | 0.204315 | 3.2:+56770256 | MS.gene049480:CDS |
| TACATAAGCACTGCAGTAAT+TGG | 0.247602 | 3.2:+56771196 | MS.gene049480:CDS |
| TCCACAACAACTGAGCTATT+TGG | 0.249847 | 3.2:+56771253 | MS.gene049480:CDS |
| CTGTTCTGCTACTTCATCTT+TGG | 0.259954 | 3.2:+56770301 | MS.gene049480:CDS |
| ATTGGTGTTATGGAAGAAAT+TGG | 0.266375 | 3.2:+56770161 | MS.gene049480:CDS |
| ACGTCTCATTCCATCTCTTT+TGG | 0.289040 | 3.2:+56770355 | MS.gene049480:CDS |
| AATTCAAGAGATTGGTGTTA+TGG | 0.341430 | 3.2:+56770151 | MS.gene049480:CDS |
| TTGGTGTTTCTTAACAATTT+GGG | 0.387056 | 3.2:+56770257 | MS.gene049480:CDS |
| TACTGCAGTGCTTATGTAAA+GGG | 0.396066 | 3.2:-56771191 | None:intergenic |
| CATAGAGAATGAAGTGAAAG+AGG | 0.417366 | 3.2:+56770112 | MS.gene049480:CDS |
| AGTTGTGAAATTCAAGAGAT+TGG | 0.423500 | 3.2:+56770143 | MS.gene049480:CDS |
| GCAGTAATTGGAGTTTCTAC+TGG | 0.428724 | 3.2:+56771208 | MS.gene049480:CDS |
| TAAAGTTCCAAGACAACAAA+AGG | 0.451891 | 3.2:-56771440 | None:intergenic |
| AAGAAGAATGCAAATGTTGT+TGG | 0.467873 | 3.2:-56771145 | None:intergenic |
| TGCCACTATAGTAGCAGTTA+TGG | 0.477489 | 3.2:+56771120 | MS.gene049480:CDS |
| TTCACTATTATTCTCCTCCA+TGG | 0.479663 | 3.2:-56770084 | None:intergenic |
| GCACTTATTTACCGTGGTGA+AGG | 0.504829 | 3.2:+56771355 | MS.gene049480:CDS |
| TTACTGCAGTGCTTATGTAA+AGG | 0.505843 | 3.2:-56771192 | None:intergenic |
| GCCAAATAGCTCAGTTGTTG+TGG | 0.519172 | 3.2:-56771254 | None:intergenic |
| CGTGGTGAAGGGAATGAACA+TGG | 0.521353 | 3.2:+56771367 | MS.gene049480:CDS |
| CACTTATTTACCGTGGTGAA+GGG | 0.524996 | 3.2:+56771356 | MS.gene049480:CDS |
| ATAGAGAATGAAGTGAAAGA+GGG | 0.533673 | 3.2:+56770113 | MS.gene049480:CDS |
| TGCCATAACTGCTACTATAG+TGG | 0.544260 | 3.2:-56771122 | None:intergenic |
| TAGAAGTAGTCCAAAAGAGA+TGG | 0.550728 | 3.2:-56770365 | None:intergenic |
| ATAACTGCTACTATAGTGGC+AGG | 0.578194 | 3.2:-56771118 | None:intergenic |
| GAATGAACATGGGAAATGCA+TGG | 0.579212 | 3.2:+56771378 | MS.gene049480:CDS |
| AATGAACATGGGAAATGCAT+GGG | 0.586706 | 3.2:+56771379 | MS.gene049480:CDS |
| ACATGGGAAATGCATGGGCA+TGG | 0.611694 | 3.2:+56771384 | MS.gene049480:CDS |
| CAGTGCTTATGTAAAGGGCA+AGG | 0.629081 | 3.2:-56771186 | None:intergenic |
| GGACAAATAGCTGAATCAAG+AGG | 0.632165 | 3.2:+56770278 | MS.gene049480:CDS |
| AGTTGTTGTGGAAATAGCAG+TGG | 0.639364 | 3.2:-56771242 | None:intergenic |
| CATGTTCATTCCCTTCACCA+CGG | 0.670222 | 3.2:-56771366 | None:intergenic |
| TCAGCTGCACTTATTTACCG+TGG | 0.674454 | 3.2:+56771349 | MS.gene049480:intron |
| GTGGTGAAGGGAATGAACAT+GGG | 0.684893 | 3.2:+56771368 | MS.gene049480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTATCTTGAAAATAT+AGG | - | chr3.2:56770780-56770799 | None:intergenic | 10.0% |
| !!! | AATAATAATTTTAATTTCAG+GGG | + | chr3.2:56771076-56771095 | MS.gene049480:intron | 10.0% |
| !!! | TATTTCTTTGTATATTTTTT+TGG | + | chr3.2:56770221-56770240 | MS.gene049480:CDS | 10.0% |
| !!! | TTCAAGATAATTTTTATTTA+AGG | + | chr3.2:56770785-56770804 | MS.gene049480:intron | 10.0% |
| !! | AAATTGTAAAAATTTAGTGT+CGG | - | chr3.2:56770589-56770608 | None:intergenic | 15.0% |
| !! | AATATAAATAAAGAATCATG+TGG | - | chr3.2:56770426-56770445 | None:intergenic | 15.0% |
| !! | AGTTATTAAGCAACAAAATT+AGG | + | chr3.2:56770703-56770722 | MS.gene049480:intron | 20.0% |
| !! | ATTTAATGCAATAATGACAA+TGG | + | chr3.2:56770897-56770916 | MS.gene049480:intron | 20.0% |
| !! | CAAAATATTGACACTATATA+CGG | - | chr3.2:56770626-56770645 | None:intergenic | 20.0% |
| !! | CTAGTAACATTGAAAATATA+GGG | - | chr3.2:56771030-56771049 | None:intergenic | 20.0% |
| !!! | AATATCACTGCTTTTTTTAA+AGG | + | chr3.2:56770652-56770671 | MS.gene049480:intron | 20.0% |
| !!! | ATAGTAACACTTTTATCATT+TGG | + | chr3.2:56771413-56771432 | MS.gene049480:CDS | 20.0% |
| !!! | GTTATGCTACATTTTAAAAA+GGG | - | chr3.2:56770847-56770866 | None:intergenic | 20.0% |
| !!! | TAGTAACACTTTTATCATTT+GGG | + | chr3.2:56771414-56771433 | MS.gene049480:CDS | 20.0% |
| !!! | TGTTATGCTACATTTTAAAA+AGG | - | chr3.2:56770848-56770867 | None:intergenic | 20.0% |
| ! | GCTAGTAACATTGAAAATAT+AGG | - | chr3.2:56771031-56771050 | None:intergenic | 25.0% |
| ! | TGTAAATCATAATGTAGTTG+TGG | + | chr3.2:56771291-56771310 | MS.gene049480:intron | 25.0% |
| ! | TGTTGAGAAGAATAAATTTC+TGG | + | chr3.2:56770195-56770214 | MS.gene049480:CDS | 25.0% |
| !! | AGTAACACTTTTATCATTTG+GGG | + | chr3.2:56771415-56771434 | MS.gene049480:CDS | 25.0% |
| !! | GAAAATTTTCGTTGCAATTT+AGG | - | chr3.2:56770531-56770550 | None:intergenic | 25.0% |
| !! | TTGGTGTTTCTTAACAATTT+GGG | + | chr3.2:56770257-56770276 | MS.gene049480:CDS | 25.0% |
| !!! | ATAAATGCCATGATTTTAGT+TGG | - | chr3.2:56770871-56770890 | None:intergenic | 25.0% |
| !!! | GAAGAGGCTTTTAATTTTTT+TGG | - | chr3.2:56770960-56770979 | None:intergenic | 25.0% |
| !!! | TATTTTTTTGGTGCAACTAT+TGG | + | chr3.2:56770233-56770252 | MS.gene049480:CDS | 25.0% |
| !!! | TTTGGTGTTTCTTAACAATT+TGG | + | chr3.2:56770256-56770275 | MS.gene049480:CDS | 25.0% |
| AAGAAGAATGCAAATGTTGT+TGG | - | chr3.2:56771148-56771167 | None:intergenic | 30.0% | |
| ACTCTGATGCAACTAATTTA+TGG | + | chr3.2:56770473-56770492 | MS.gene049480:intron | 30.0% | |
| AGTTGTGAAATTCAAGAGAT+TGG | + | chr3.2:56770143-56770162 | MS.gene049480:CDS | 30.0% | |
| ATAGAGAATGAAGTGAAAGA+GGG | + | chr3.2:56770113-56770132 | MS.gene049480:CDS | 30.0% | |
| CATAACACCAACTAAAATCA+TGG | + | chr3.2:56770861-56770880 | MS.gene049480:intron | 30.0% | |
| GACTACTTCTATAGGTAATA+TGG | + | chr3.2:56770377-56770396 | MS.gene049480:intron | 30.0% | |
| TAAAGTTCCAAGACAACAAA+AGG | - | chr3.2:56771443-56771462 | None:intergenic | 30.0% | |
| TTGTTGTCTTGGAACTTTAT+TGG | + | chr3.2:56771444-56771463 | MS.gene049480:CDS | 30.0% | |
| ! | AATAATGACAATGGTGATGT+TGG | + | chr3.2:56770906-56770925 | MS.gene049480:intron | 30.0% |
| !! | AATTCAAGAGATTGGTGTTA+TGG | + | chr3.2:56770151-56770170 | MS.gene049480:CDS | 30.0% |
| !! | ATTGGTGTTATGGAAGAAAT+TGG | + | chr3.2:56770161-56770180 | MS.gene049480:CDS | 30.0% |
| !! | TCTTCTGCTTTTGGATTTTT+TGG | + | chr3.2:56770332-56770351 | MS.gene049480:CDS | 30.0% |
| AATGAACATGGGAAATGCAT+GGG | + | chr3.2:56771379-56771398 | MS.gene049480:CDS | 35.0% | |
| AGAATGCTAACTAGTGTTCA+GGG | + | chr3.2:56770675-56770694 | MS.gene049480:intron | 35.0% | |
| AGCTGAGTAACCAAACAAAA+AGG | - | chr3.2:56771335-56771354 | None:intergenic | 35.0% | |
| AGTTGTGGCAAATATTCCAA+TGG | + | chr3.2:56771306-56771325 | MS.gene049480:intron | 35.0% | |
| ATTCCTTAACTAGTGCTTCT+GGG | + | chr3.2:56770808-56770827 | MS.gene049480:intron | 35.0% | |
| CATAGAGAATGAAGTGAAAG+AGG | + | chr3.2:56770112-56770131 | MS.gene049480:CDS | 35.0% | |
| GTTGTGGCAAATATTCCAAT+GGG | + | chr3.2:56771307-56771326 | MS.gene049480:intron | 35.0% | |
| TACTGCAGTGCTTATGTAAA+GGG | - | chr3.2:56771194-56771213 | None:intergenic | 35.0% | |
| TAGAAGTAGTCCAAAAGAGA+TGG | - | chr3.2:56770368-56770387 | None:intergenic | 35.0% | |
| TTACTGCAGTGCTTATGTAA+AGG | - | chr3.2:56771195-56771214 | None:intergenic | 35.0% | |
| ! | CTCTTTTGGACTACTTCTAT+AGG | + | chr3.2:56770369-56770388 | MS.gene049480:CDS | 35.0% |
| ! | TACATAAGCACTGCAGTAAT+TGG | + | chr3.2:56771196-56771215 | MS.gene049480:CDS | 35.0% |
| !! | TTTTGGTGCAACTATTGGTT+TGG | + | chr3.2:56770238-56770257 | MS.gene049480:CDS | 35.0% |
| AGCCAAGTCAATAAGAGAAG+AGG | - | chr3.2:56770976-56770995 | None:intergenic | 40.0% | |
| AGTTGTTGTGGAAATAGCAG+TGG | - | chr3.2:56771245-56771264 | None:intergenic | 40.0% | |
| ATAACTGCTACTATAGTGGC+AGG | - | chr3.2:56771121-56771140 | None:intergenic | 40.0% | |
| CAATTTAGGCAGCAACTTCA+AGG | - | chr3.2:56770517-56770536 | None:intergenic | 40.0% | |
| CACTTATTTACCGTGGTGAA+GGG | + | chr3.2:56771356-56771375 | MS.gene049480:CDS | 40.0% | |
| CCAAACAAAAAGGATCCCAT+TGG | - | chr3.2:56771325-56771344 | None:intergenic | 40.0% | |
| GAATGAACATGGGAAATGCA+TGG | + | chr3.2:56771378-56771397 | MS.gene049480:CDS | 40.0% | |
| GAATGCTAACTAGTGTTCAG+GGG | + | chr3.2:56770676-56770695 | MS.gene049480:intron | 40.0% | |
| GAGAATGCTAACTAGTGTTC+AGG | + | chr3.2:56770674-56770693 | MS.gene049480:intron | 40.0% | |
| GATTCCTTAACTAGTGCTTC+TGG | + | chr3.2:56770807-56770826 | MS.gene049480:intron | 40.0% | |
| GCAGTAATTGGAGTTTCTAC+TGG | + | chr3.2:56771208-56771227 | MS.gene049480:CDS | 40.0% | |
| GGACAAATAGCTGAATCAAG+AGG | + | chr3.2:56770278-56770297 | MS.gene049480:CDS | 40.0% | |
| TCCACAACAACTGAGCTATT+TGG | + | chr3.2:56771253-56771272 | MS.gene049480:CDS | 40.0% | |
| TGCCACTATAGTAGCAGTTA+TGG | + | chr3.2:56771120-56771139 | MS.gene049480:CDS | 40.0% | |
| TGCCATAACTGCTACTATAG+TGG | - | chr3.2:56771125-56771144 | None:intergenic | 40.0% | |
| ! | ACGTCTCATTCCATCTCTTT+TGG | + | chr3.2:56770355-56770374 | MS.gene049480:CDS | 40.0% |
| ! | AGCCTCTTCTCTTATTGACT+TGG | + | chr3.2:56770971-56770990 | MS.gene049480:intron | 40.0% |
| ! | CCAATGGGATCCTTTTTGTT+TGG | + | chr3.2:56771322-56771341 | MS.gene049480:intron | 40.0% |
| ! | CTGTTCTGCTACTTCATCTT+TGG | + | chr3.2:56770301-56770320 | MS.gene049480:CDS | 40.0% |
| ! | GTGTCTTTGTCTTCTGCTTT+TGG | + | chr3.2:56770323-56770342 | MS.gene049480:CDS | 40.0% |
| CAGTGCTTATGTAAAGGGCA+AGG | - | chr3.2:56771189-56771208 | None:intergenic | 45.0% | |
| CATGTTCATTCCCTTCACCA+CGG | - | chr3.2:56771369-56771388 | None:intergenic | 45.0% | |
| GCACTTATTTACCGTGGTGA+AGG | + | chr3.2:56771355-56771374 | MS.gene049480:CDS | 45.0% | |
| GCCAAATAGCTCAGTTGTTG+TGG | - | chr3.2:56771257-56771276 | None:intergenic | 45.0% | |
| GTGGTGAAGGGAATGAACAT+GGG | + | chr3.2:56771368-56771387 | MS.gene049480:CDS | 45.0% | |
| TCAGCTGCACTTATTTACCG+TGG | + | chr3.2:56771349-56771368 | MS.gene049480:intron | 45.0% | |
| !! | TGGGGTTCCTTTTGTTGTCT+TGG | + | chr3.2:56771433-56771452 | MS.gene049480:CDS | 45.0% |
| !! | TGTCCCAGAAGCACTAGTTA+AGG | - | chr3.2:56770814-56770833 | None:intergenic | 45.0% |
| !!! | TAATAATAATTTTAATTTCA+GGG | + | chr3.2:56771075-56771094 | MS.gene049480:intron | 5.0% |
| !!! | TTAATAATAATTTTAATTTC+AGG | + | chr3.2:56771074-56771093 | MS.gene049480:intron | 5.0% |
| ACATGGGAAATGCATGGGCA+TGG | + | chr3.2:56771384-56771403 | MS.gene049480:CDS | 50.0% | |
| CGTGGTGAAGGGAATGAACA+TGG | + | chr3.2:56771367-56771386 | MS.gene049480:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 56770086 | 56771472 | 56770086 | ID=MS.gene049480 |
| chr3.2 | mRNA | 56770086 | 56771472 | 56770086 | ID=MS.gene049480.t1;Parent=MS.gene049480 |
| chr3.2 | exon | 56770086 | 56770390 | 56770086 | ID=MS.gene049480.t1.exon1;Parent=MS.gene049480.t1 |
| chr3.2 | CDS | 56770086 | 56770390 | 56770086 | ID=cds.MS.gene049480.t1;Parent=MS.gene049480.t1 |
| chr3.2 | exon | 56771096 | 56771291 | 56771096 | ID=MS.gene049480.t1.exon2;Parent=MS.gene049480.t1 |
| chr3.2 | CDS | 56771096 | 56771291 | 56771096 | ID=cds.MS.gene049480.t1;Parent=MS.gene049480.t1 |
| chr3.2 | exon | 56771353 | 56771472 | 56771353 | ID=MS.gene049480.t1.exon3;Parent=MS.gene049480.t1 |
| chr3.2 | CDS | 56771353 | 56771472 | 56771353 | ID=cds.MS.gene049480.t1;Parent=MS.gene049480.t1 |
| Gene Sequence |
| Protein sequence |
