Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071546.t1 | KEH27308.1 | 100 | 83 | 0 | 0 | 1 | 83 | 948 | 1030 | 1.10E-38 | 168.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071546.t1 | Q8VY06 | 81.9 | 83 | 15 | 0 | 1 | 83 | 950 | 1032 | 1.5e-34 | 146.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071546.t1 | A0A072UDY2 | 100.0 | 83 | 0 | 0 | 1 | 83 | 948 | 1030 | 8.2e-39 | 168.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049150 | MS.gene071546 | 0.824668 | 7.12E-54 | -1.69E-46 |
MS.gene049151 | MS.gene071546 | 0.800139 | 1.66E-48 | -1.69E-46 |
MS.gene049153 | MS.gene071546 | 0.839466 | 1.56E-57 | -1.69E-46 |
MS.gene049351 | MS.gene071546 | 0.858137 | 1.01E-62 | -1.69E-46 |
MS.gene049356 | MS.gene071546 | 0.852292 | 5.08E-61 | -1.69E-46 |
MS.gene049369 | MS.gene071546 | 0.828191 | 1.03E-54 | -1.69E-46 |
MS.gene049480 | MS.gene071546 | 0.810691 | 1.02E-50 | -1.69E-46 |
MS.gene049661 | MS.gene071546 | 0.812201 | 4.78E-51 | -1.69E-46 |
MS.gene049662 | MS.gene071546 | 0.812503 | 4.10E-51 | -1.69E-46 |
MS.gene049758 | MS.gene071546 | 0.852545 | 4.30E-61 | -1.69E-46 |
MS.gene049805 | MS.gene071546 | 0.808895 | 2.47E-50 | -1.69E-46 |
MS.gene049910 | MS.gene071546 | 0.8208 | 5.66E-53 | -1.69E-46 |
MS.gene050128 | MS.gene071546 | 0.810162 | 1.32E-50 | -1.69E-46 |
MS.gene050301 | MS.gene071546 | 0.867433 | 1.37E-65 | -1.69E-46 |
MS.gene050397 | MS.gene071546 | 0.872889 | 2.25E-67 | -1.69E-46 |
MS.gene050400 | MS.gene071546 | 0.820223 | 7.68E-53 | -1.69E-46 |
MS.gene050426 | MS.gene071546 | -0.859622 | 3.64E-63 | -1.69E-46 |
MS.gene050432 | MS.gene071546 | 0.803532 | 3.33E-49 | -1.69E-46 |
MS.gene050464 | MS.gene071546 | 0.851871 | 6.69E-61 | -1.69E-46 |
MS.gene050529 | MS.gene071546 | 0.856166 | 3.87E-62 | -1.69E-46 |
MS.gene050593 | MS.gene071546 | 0.827264 | 1.72E-54 | -1.69E-46 |
MS.gene050642 | MS.gene071546 | 0.817275 | 3.59E-52 | -1.69E-46 |
MS.gene050650 | MS.gene071546 | 0.813487 | 2.50E-51 | -1.69E-46 |
MS.gene050670 | MS.gene071546 | 0.899711 | 1.51E-77 | -1.69E-46 |
MS.gene050812 | MS.gene071546 | 0.804254 | 2.36E-49 | -1.69E-46 |
MS.gene050971 | MS.gene071546 | 0.882148 | 1.33E-70 | -1.69E-46 |
MS.gene05101 | MS.gene071546 | 0.819257 | 1.28E-52 | -1.69E-46 |
MS.gene05105 | MS.gene071546 | 0.865709 | 4.85E-65 | -1.69E-46 |
MS.gene051255 | MS.gene071546 | 0.818494 | 1.90E-52 | -1.69E-46 |
MS.gene051360 | MS.gene071546 | 0.850145 | 2.05E-60 | -1.69E-46 |
MS.gene051387 | MS.gene071546 | 0.848589 | 5.57E-60 | -1.69E-46 |
MS.gene051521 | MS.gene071546 | 0.808657 | 2.78E-50 | -1.69E-46 |
MS.gene051525 | MS.gene071546 | 0.875925 | 2.10E-68 | -1.69E-46 |
MS.gene051582 | MS.gene071546 | 0.82775 | 1.32E-54 | -1.69E-46 |
MS.gene051860 | MS.gene071546 | 0.867466 | 1.34E-65 | -1.69E-46 |
MS.gene051877 | MS.gene071546 | 0.807009 | 6.23E-50 | -1.69E-46 |
MS.gene051983 | MS.gene071546 | 0.845146 | 4.87E-59 | -1.69E-46 |
MS.gene052011 | MS.gene071546 | -0.879508 | 1.18E-69 | -1.69E-46 |
MS.gene052077 | MS.gene071546 | 0.863917 | 1.77E-64 | -1.69E-46 |
MS.gene052078 | MS.gene071546 | 0.81268 | 3.75E-51 | -1.69E-46 |
MS.gene052128 | MS.gene071546 | -0.807622 | 4.62E-50 | -1.69E-46 |
MS.gene052134 | MS.gene071546 | 0.830708 | 2.52E-55 | -1.69E-46 |
MS.gene052135 | MS.gene071546 | 0.835945 | 1.25E-56 | -1.69E-46 |
MS.gene052136 | MS.gene071546 | 0.826285 | 2.95E-54 | -1.69E-46 |
MS.gene052178 | MS.gene071546 | 0.804932 | 1.70E-49 | -1.69E-46 |
MS.gene052188 | MS.gene071546 | 0.896172 | 4.76E-76 | -1.69E-46 |
MS.gene052253 | MS.gene071546 | 0.89612 | 5.00E-76 | -1.69E-46 |
MS.gene052310 | MS.gene071546 | 0.861255 | 1.17E-63 | -1.69E-46 |
MS.gene052322 | MS.gene071546 | 0.820659 | 6.10E-53 | -1.69E-46 |
MS.gene05233 | MS.gene071546 | -0.801385 | 9.23E-49 | -1.69E-46 |
MS.gene052340 | MS.gene071546 | 0.873044 | 1.99E-67 | -1.69E-46 |
MS.gene052346 | MS.gene071546 | 0.801544 | 8.57E-49 | -1.69E-46 |
MS.gene052414 | MS.gene071546 | 0.829397 | 5.27E-55 | -1.69E-46 |
MS.gene052421 | MS.gene071546 | 0.831844 | 1.33E-55 | -1.69E-46 |
MS.gene052469 | MS.gene071546 | 0.802905 | 4.49E-49 | -1.69E-46 |
MS.gene052481 | MS.gene071546 | 0.832033 | 1.19E-55 | -1.69E-46 |
MS.gene052484 | MS.gene071546 | 0.825335 | 4.96E-54 | -1.69E-46 |
MS.gene052485 | MS.gene071546 | 0.873036 | 2.01E-67 | -1.69E-46 |
MS.gene052982 | MS.gene071546 | 0.833601 | 4.86E-56 | -1.69E-46 |
MS.gene053103 | MS.gene071546 | 0.806835 | 6.78E-50 | -1.69E-46 |
MS.gene053169 | MS.gene071546 | 0.840161 | 1.03E-57 | -1.69E-46 |
MS.gene05316 | MS.gene071546 | 0.84582 | 3.20E-59 | -1.69E-46 |
MS.gene053209 | MS.gene071546 | 0.865684 | 4.94E-65 | -1.69E-46 |
MS.gene053449 | MS.gene071546 | 0.830555 | 2.75E-55 | -1.69E-46 |
MS.gene053557 | MS.gene071546 | 0.841676 | 4.11E-58 | -1.69E-46 |
MS.gene053758 | MS.gene071546 | 0.84894 | 4.45E-60 | -1.69E-46 |
MS.gene053836 | MS.gene071546 | 0.864039 | 1.62E-64 | -1.69E-46 |
MS.gene053912 | MS.gene071546 | 0.807157 | 5.80E-50 | -1.69E-46 |
MS.gene053928 | MS.gene071546 | 0.832341 | 9.99E-56 | -1.69E-46 |
MS.gene054010 | MS.gene071546 | 0.833515 | 5.10E-56 | -1.69E-46 |
MS.gene054011 | MS.gene071546 | 0.83386 | 4.18E-56 | -1.69E-46 |
MS.gene054012 | MS.gene071546 | 0.835478 | 1.64E-56 | -1.69E-46 |
MS.gene054013 | MS.gene071546 | 0.831533 | 1.58E-55 | -1.69E-46 |
MS.gene054123 | MS.gene071546 | 0.847175 | 1.37E-59 | -1.69E-46 |
MS.gene054183 | MS.gene071546 | 0.863691 | 2.08E-64 | -1.69E-46 |
MS.gene054349 | MS.gene071546 | 0.85547 | 6.17E-62 | -1.69E-46 |
MS.gene054473 | MS.gene071546 | 0.809112 | 2.22E-50 | -1.69E-46 |
MS.gene054556 | MS.gene071546 | 0.869367 | 3.27E-66 | -1.69E-46 |
MS.gene054719 | MS.gene071546 | 0.827088 | 1.90E-54 | -1.69E-46 |
MS.gene054930 | MS.gene071546 | 0.806957 | 6.39E-50 | -1.69E-46 |
MS.gene054955 | MS.gene071546 | 0.811069 | 8.42E-51 | -1.69E-46 |
MS.gene054983 | MS.gene071546 | 0.801244 | 9.87E-49 | -1.69E-46 |
MS.gene05505 | MS.gene071546 | 0.824257 | 8.90E-54 | -1.69E-46 |
MS.gene055116 | MS.gene071546 | 0.867419 | 1.39E-65 | -1.69E-46 |
MS.gene055277 | MS.gene071546 | 0.874278 | 7.65E-68 | -1.69E-46 |
MS.gene055369 | MS.gene071546 | 0.845229 | 4.63E-59 | -1.69E-46 |
MS.gene055390 | MS.gene071546 | 0.845846 | 3.15E-59 | -1.69E-46 |
MS.gene055412 | MS.gene071546 | 0.82104 | 4.99E-53 | -1.69E-46 |
MS.gene055422 | MS.gene071546 | 0.845548 | 3.79E-59 | -1.69E-46 |
MS.gene055428 | MS.gene071546 | 0.825836 | 3.77E-54 | -1.69E-46 |
MS.gene055539 | MS.gene071546 | 0.809808 | 1.58E-50 | -1.69E-46 |
MS.gene05553 | MS.gene071546 | 0.874398 | 6.97E-68 | -1.69E-46 |
MS.gene055564 | MS.gene071546 | 0.807097 | 5.97E-50 | -1.69E-46 |
MS.gene055604 | MS.gene071546 | 0.846964 | 1.56E-59 | -1.69E-46 |
MS.gene055666 | MS.gene071546 | 0.85621 | 3.75E-62 | -1.69E-46 |
MS.gene055741 | MS.gene071546 | 0.818335 | 2.07E-52 | -1.69E-46 |
MS.gene055744 | MS.gene071546 | 0.828627 | 8.09E-55 | -1.69E-46 |
MS.gene055909 | MS.gene071546 | 0.814058 | 1.87E-51 | -1.69E-46 |
MS.gene055911 | MS.gene071546 | 0.821949 | 3.08E-53 | -1.69E-46 |
MS.gene05594 | MS.gene071546 | 0.807896 | 4.04E-50 | -1.69E-46 |
MS.gene056191 | MS.gene071546 | 0.841393 | 4.88E-58 | -1.69E-46 |
MS.gene056233 | MS.gene071546 | 0.802117 | 6.53E-49 | -1.69E-46 |
MS.gene056407 | MS.gene071546 | 0.861202 | 1.21E-63 | -1.69E-46 |
MS.gene056410 | MS.gene071546 | 0.835401 | 1.71E-56 | -1.69E-46 |
MS.gene056447 | MS.gene071546 | 0.814686 | 1.36E-51 | -1.69E-46 |
MS.gene056511 | MS.gene071546 | 0.862602 | 4.51E-64 | -1.69E-46 |
MS.gene056514 | MS.gene071546 | 0.805557 | 1.26E-49 | -1.69E-46 |
MS.gene056609 | MS.gene071546 | 0.819336 | 1.23E-52 | -1.69E-46 |
MS.gene056612 | MS.gene071546 | 0.83565 | 1.48E-56 | -1.69E-46 |
MS.gene056659 | MS.gene071546 | 0.886412 | 3.50E-72 | -1.69E-46 |
MS.gene056723 | MS.gene071546 | 0.850217 | 1.96E-60 | -1.69E-46 |
MS.gene056796 | MS.gene071546 | 0.844193 | 8.80E-59 | -1.69E-46 |
MS.gene056899 | MS.gene071546 | -0.822258 | 2.61E-53 | -1.69E-46 |
MS.gene056902 | MS.gene071546 | 0.832519 | 9.03E-56 | -1.69E-46 |
MS.gene056979 | MS.gene071546 | 0.842756 | 2.13E-58 | -1.69E-46 |
MS.gene057011 | MS.gene071546 | 0.807839 | 4.15E-50 | -1.69E-46 |
MS.gene05702 | MS.gene071546 | 0.83544 | 1.68E-56 | -1.69E-46 |
MS.gene057121 | MS.gene071546 | 0.829293 | 5.58E-55 | -1.69E-46 |
MS.gene057124 | MS.gene071546 | 0.877426 | 6.35E-69 | -1.69E-46 |
MS.gene057146 | MS.gene071546 | 0.814862 | 1.24E-51 | -1.69E-46 |
MS.gene057396 | MS.gene071546 | 0.841527 | 4.50E-58 | -1.69E-46 |
MS.gene057448 | MS.gene071546 | 0.850818 | 1.33E-60 | -1.69E-46 |
MS.gene057449 | MS.gene071546 | 0.839108 | 1.93E-57 | -1.69E-46 |
MS.gene057450 | MS.gene071546 | 0.848215 | 7.06E-60 | -1.69E-46 |
MS.gene057469 | MS.gene071546 | 0.826836 | 2.18E-54 | -1.69E-46 |
MS.gene057476 | MS.gene071546 | 0.836608 | 8.47E-57 | -1.69E-46 |
MS.gene057749 | MS.gene071546 | 0.855763 | 5.07E-62 | -1.69E-46 |
MS.gene057823 | MS.gene071546 | 0.863957 | 1.72E-64 | -1.69E-46 |
MS.gene057825 | MS.gene071546 | 0.814374 | 1.59E-51 | -1.69E-46 |
MS.gene058002 | MS.gene071546 | 0.861415 | 1.04E-63 | -1.69E-46 |
MS.gene058006 | MS.gene071546 | 0.830544 | 2.77E-55 | -1.69E-46 |
MS.gene058007 | MS.gene071546 | 0.859831 | 3.15E-63 | -1.69E-46 |
MS.gene058082 | MS.gene071546 | 0.826952 | 2.05E-54 | -1.69E-46 |
MS.gene05811 | MS.gene071546 | 0.8797 | 1.01E-69 | -1.69E-46 |
MS.gene058120 | MS.gene071546 | 0.801945 | 7.08E-49 | -1.69E-46 |
MS.gene058142 | MS.gene071546 | 0.844695 | 6.45E-59 | -1.69E-46 |
MS.gene058233 | MS.gene071546 | 0.819827 | 9.47E-53 | -1.69E-46 |
MS.gene058276 | MS.gene071546 | 0.812739 | 3.64E-51 | -1.69E-46 |
MS.gene058293 | MS.gene071546 | 0.817948 | 2.53E-52 | -1.69E-46 |
MS.gene058365 | MS.gene071546 | 0.820735 | 5.86E-53 | -1.69E-46 |
MS.gene058376 | MS.gene071546 | 0.833597 | 4.87E-56 | -1.69E-46 |
MS.gene05842 | MS.gene071546 | 0.835681 | 1.46E-56 | -1.69E-46 |
MS.gene058444 | MS.gene071546 | 0.826089 | 3.28E-54 | -1.69E-46 |
MS.gene058660 | MS.gene071546 | 0.853165 | 2.86E-61 | -1.69E-46 |
MS.gene058700 | MS.gene071546 | 0.868982 | 4.35E-66 | -1.69E-46 |
MS.gene058710 | MS.gene071546 | 0.839096 | 1.94E-57 | -1.69E-46 |
MS.gene058787 | MS.gene071546 | 0.829172 | 5.97E-55 | -1.69E-46 |
MS.gene05886 | MS.gene071546 | 0.85589 | 4.65E-62 | -1.69E-46 |
MS.gene058928 | MS.gene071546 | 0.875079 | 4.09E-68 | -1.69E-46 |
MS.gene058948 | MS.gene071546 | 0.843218 | 1.60E-58 | -1.69E-46 |
MS.gene058949 | MS.gene071546 | 0.821049 | 4.96E-53 | -1.69E-46 |
MS.gene05907 | MS.gene071546 | 0.890579 | 8.67E-74 | -1.69E-46 |
MS.gene059082 | MS.gene071546 | 0.815487 | 9.01E-52 | -1.69E-46 |
MS.gene059141 | MS.gene071546 | 0.829188 | 5.92E-55 | -1.69E-46 |
MS.gene059285 | MS.gene071546 | 0.828396 | 9.20E-55 | -1.69E-46 |
MS.gene059294 | MS.gene071546 | 0.85351 | 2.28E-61 | -1.69E-46 |
MS.gene059366 | MS.gene071546 | 0.864395 | 1.25E-64 | -1.69E-46 |
MS.gene059420 | MS.gene071546 | 0.9025 | 9.10E-79 | -1.69E-46 |
MS.gene059462 | MS.gene071546 | 0.827564 | 1.46E-54 | -1.69E-46 |
MS.gene059518 | MS.gene071546 | 0.815075 | 1.11E-51 | -1.69E-46 |
MS.gene059536 | MS.gene071546 | 0.809454 | 1.88E-50 | -1.69E-46 |
MS.gene059597 | MS.gene071546 | 0.839261 | 1.76E-57 | -1.69E-46 |
MS.gene05959 | MS.gene071546 | 0.840752 | 7.20E-58 | -1.69E-46 |
MS.gene059674 | MS.gene071546 | 0.828999 | 6.58E-55 | -1.69E-46 |
MS.gene059676 | MS.gene071546 | 0.872852 | 2.31E-67 | -1.69E-46 |
MS.gene059688 | MS.gene071546 | 0.885931 | 5.31E-72 | -1.69E-46 |
MS.gene059692 | MS.gene071546 | 0.870087 | 1.90E-66 | -1.69E-46 |
MS.gene059695 | MS.gene071546 | 0.867814 | 1.04E-65 | -1.69E-46 |
MS.gene059711 | MS.gene071546 | 0.813525 | 2.45E-51 | -1.69E-46 |
MS.gene059807 | MS.gene071546 | 0.84866 | 5.32E-60 | -1.69E-46 |
MS.gene05984 | MS.gene071546 | 0.881355 | 2.57E-70 | -1.69E-46 |
MS.gene059894 | MS.gene071546 | 0.847286 | 1.27E-59 | -1.69E-46 |
MS.gene060247 | MS.gene071546 | 0.810421 | 1.16E-50 | -1.69E-46 |
MS.gene06037 | MS.gene071546 | 0.829502 | 4.97E-55 | -1.69E-46 |
MS.gene060403 | MS.gene071546 | 0.843096 | 1.73E-58 | -1.69E-46 |
MS.gene060407 | MS.gene071546 | 0.813276 | 2.78E-51 | -1.69E-46 |
MS.gene060804 | MS.gene071546 | 0.824984 | 6.00E-54 | -1.69E-46 |
MS.gene060835 | MS.gene071546 | 0.80758 | 4.71E-50 | -1.69E-46 |
MS.gene060837 | MS.gene071546 | 0.852549 | 4.29E-61 | -1.69E-46 |
MS.gene060986 | MS.gene071546 | 0.852832 | 3.56E-61 | -1.69E-46 |
MS.gene061041 | MS.gene071546 | 0.801348 | 9.39E-49 | -1.69E-46 |
MS.gene061049 | MS.gene071546 | 0.873016 | 2.04E-67 | -1.69E-46 |
MS.gene061051 | MS.gene071546 | -0.843409 | 1.43E-58 | -1.69E-46 |
MS.gene061154 | MS.gene071546 | 0.899086 | 2.81E-77 | -1.69E-46 |
MS.gene061159 | MS.gene071546 | 0.840777 | 7.09E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 22 sgRNAs with CRISPR-Local
Find 28 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGTATGTTGCGGTATATAC+TGG | 0.218929 | 5.3:+246706 | MS.gene071546:intron |
ATCCCCAATGGTCCCGATTA+TGG | 0.250985 | 5.3:-246491 | None:intergenic |
ACTCTTACAAAAGCCATAAT+CGG | 0.362269 | 5.3:+246478 | MS.gene071546:CDS |
TGGTGACTTCTTAAGAGAAT+TGG | 0.365879 | 5.3:+246441 | MS.gene071546:CDS |
AAGCCATAATCGGGACCATT+GGG | 0.373438 | 5.3:+246488 | MS.gene071546:CDS |
GGGATCACGATAAGACAAAA+AGG | 0.416539 | 5.3:-246383 | None:intergenic |
TTCATACCTACTATAACCTT+TGG | 0.427406 | 5.3:-246539 | None:intergenic |
CTACTATAACCTTTGGCATC+AGG | 0.430815 | 5.3:-246532 | None:intergenic |
TTTGGCATCAGGAAGTTGAT+AGG | 0.461058 | 5.3:-246521 | None:intergenic |
CTGATGCCAAAGGTTATAGT+AGG | 0.492789 | 5.3:+246533 | MS.gene071546:CDS |
AAAACACTTGAGGTATATGA+TGG | 0.499301 | 5.3:+246415 | MS.gene071546:CDS |
CTCTTACAAAAGCCATAATC+GGG | 0.515937 | 5.3:+246479 | MS.gene071546:CDS |
AAAGCCATAATCGGGACCAT+TGG | 0.520667 | 5.3:+246487 | MS.gene071546:CDS |
TGGGTATCACAGAGGAAGAA+AGG | 0.534259 | 5.3:+246726 | MS.gene071546:CDS |
AGTATGTTGCGGTATATACT+GGG | 0.560882 | 5.3:+246707 | MS.gene071546:intron |
CTTGAGGTATATGATGGAAC+TGG | 0.561746 | 5.3:+246421 | MS.gene071546:CDS |
TATCAACTTCCTGATGCCAA+AGG | 0.598450 | 5.3:+246523 | MS.gene071546:CDS |
GAAGAAAGGCAAAAGAGACG+TGG | 0.599903 | 5.3:+246740 | MS.gene071546:CDS |
ATAGGAGTCTACATCCCCAA+TGG | 0.650682 | 5.3:-246503 | None:intergenic |
AGCCATAATCGGGACCATTG+GGG | 0.686109 | 5.3:+246489 | MS.gene071546:CDS |
GTATATACTGGGTATCACAG+AGG | 0.779699 | 5.3:+246718 | MS.gene071546:CDS |
GTGGAGAGATATTATCTACG+AGG | 0.781070 | 5.3:+246759 | MS.gene071546:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AATAAAAAAGCAGCATGATT+TGG | - | chr5.3:246650-246669 | None:intergenic | 25.0% |
!! | ATTTCATTTTCAGTATGTTG+CGG | + | chr5.3:246696-246715 | MS.gene071546:intron | 25.0% |
AAAACACTTGAGGTATATGA+TGG | + | chr5.3:246415-246434 | MS.gene071546:CDS | 30.0% | |
ACTCTTACAAAAGCCATAAT+CGG | + | chr5.3:246478-246497 | MS.gene071546:CDS | 30.0% | |
TTCATACCTACTATAACCTT+TGG | - | chr5.3:246542-246561 | None:intergenic | 30.0% | |
! | GCATGATTTGGAAATTTAGA+AGG | - | chr5.3:246638-246657 | None:intergenic | 30.0% |
!!! | TCAAGTGTTTTTAGCAAGTT+GGG | - | chr5.3:246406-246425 | None:intergenic | 30.0% |
AGTATGTTGCGGTATATACT+GGG | + | chr5.3:246707-246726 | MS.gene071546:intron | 35.0% | |
CTCTTACAAAAGCCATAATC+GGG | + | chr5.3:246479-246498 | MS.gene071546:CDS | 35.0% | |
TGGTGACTTCTTAAGAGAAT+TGG | + | chr5.3:246441-246460 | MS.gene071546:CDS | 35.0% | |
!! | CAACTTGCTAAAAACACTTG+AGG | + | chr5.3:246405-246424 | MS.gene071546:CDS | 35.0% |
!!! | CTCAAGTGTTTTTAGCAAGT+TGG | - | chr5.3:246407-246426 | None:intergenic | 35.0% |
CAGTATGTTGCGGTATATAC+TGG | + | chr5.3:246706-246725 | MS.gene071546:intron | 40.0% | |
CTACTATAACCTTTGGCATC+AGG | - | chr5.3:246535-246554 | None:intergenic | 40.0% | |
CTGATGCCAAAGGTTATAGT+AGG | + | chr5.3:246533-246552 | MS.gene071546:CDS | 40.0% | |
GGGATCACGATAAGACAAAA+AGG | - | chr5.3:246386-246405 | None:intergenic | 40.0% | |
GTATATACTGGGTATCACAG+AGG | + | chr5.3:246718-246737 | MS.gene071546:CDS | 40.0% | |
GTGGAGAGATATTATCTACG+AGG | + | chr5.3:246759-246778 | MS.gene071546:CDS | 40.0% | |
TATCAACTTCCTGATGCCAA+AGG | + | chr5.3:246523-246542 | MS.gene071546:CDS | 40.0% | |
! | CTTGAGGTATATGATGGAAC+TGG | + | chr5.3:246421-246440 | MS.gene071546:CDS | 40.0% |
! | TTTGGCATCAGGAAGTTGAT+AGG | - | chr5.3:246524-246543 | None:intergenic | 40.0% |
AAAGCCATAATCGGGACCAT+TGG | + | chr5.3:246487-246506 | MS.gene071546:CDS | 45.0% | |
AAGCCATAATCGGGACCATT+GGG | + | chr5.3:246488-246507 | MS.gene071546:CDS | 45.0% | |
ATAGGAGTCTACATCCCCAA+TGG | - | chr5.3:246506-246525 | None:intergenic | 45.0% | |
GAAGAAAGGCAAAAGAGACG+TGG | + | chr5.3:246740-246759 | MS.gene071546:CDS | 45.0% | |
TGGGTATCACAGAGGAAGAA+AGG | + | chr5.3:246726-246745 | MS.gene071546:CDS | 45.0% | |
AGCCATAATCGGGACCATTG+GGG | + | chr5.3:246489-246508 | MS.gene071546:CDS | 50.0% | |
ATCCCCAATGGTCCCGATTA+TGG | - | chr5.3:246494-246513 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 246374 | 246780 | 246374 | ID=MS.gene071546 |
chr5.3 | mRNA | 246374 | 246780 | 246374 | ID=MS.gene071546.t1;Parent=MS.gene071546 |
chr5.3 | exon | 246374 | 246554 | 246374 | ID=MS.gene071546.t1.exon1;Parent=MS.gene071546.t1 |
chr5.3 | CDS | 246374 | 246554 | 246374 | ID=cds.MS.gene071546.t1;Parent=MS.gene071546.t1 |
chr5.3 | exon | 246709 | 246780 | 246709 | ID=MS.gene071546.t1.exon2;Parent=MS.gene071546.t1 |
chr5.3 | CDS | 246709 | 246780 | 246709 | ID=cds.MS.gene071546.t1;Parent=MS.gene071546.t1 |
Gene Sequence |
Protein sequence |