Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81859.t1 | XP_013452928.1 | 95.5 | 870 | 35 | 3 | 1 | 867 | 1 | 869 | 0.00E+00 | 1587 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81859.t1 | Q9C8E6 | 53.3 | 890 | 344 | 22 | 1 | 866 | 1 | 842 | 7.9e-216 | 751.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81859.t1 | A0A072UBY1 | 95.5 | 870 | 35 | 3 | 1 | 867 | 1 | 869 | 0.0e+00 | 1587.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene81859 | 0.802597 | 5.20E-49 | -1.69E-46 |
| MS.gene049153 | MS.gene81859 | 0.802535 | 5.36E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene81859 | 0.891088 | 5.46E-74 | -1.69E-46 |
| MS.gene049369 | MS.gene81859 | 0.852614 | 4.11E-61 | -1.69E-46 |
| MS.gene049396 | MS.gene81859 | 0.811864 | 5.65E-51 | -1.69E-46 |
| MS.gene049480 | MS.gene81859 | 0.802736 | 4.87E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene81859 | 0.860812 | 1.59E-63 | -1.69E-46 |
| MS.gene050301 | MS.gene81859 | 0.813431 | 2.57E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene81859 | 0.816686 | 4.87E-52 | -1.69E-46 |
| MS.gene050971 | MS.gene81859 | 0.832265 | 1.04E-55 | -1.69E-46 |
| MS.gene051360 | MS.gene81859 | 0.853077 | 3.03E-61 | -1.69E-46 |
| MS.gene051521 | MS.gene81859 | 0.825831 | 3.78E-54 | -1.69E-46 |
| MS.gene051605 | MS.gene81859 | 0.807971 | 3.89E-50 | -1.69E-46 |
| MS.gene051860 | MS.gene81859 | 0.802291 | 6.02E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene81859 | 0.872156 | 3.95E-67 | -1.69E-46 |
| MS.gene052253 | MS.gene81859 | 0.805901 | 1.07E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene81859 | 0.861324 | 1.11E-63 | -1.69E-46 |
| MS.gene052414 | MS.gene81859 | 0.815288 | 9.98E-52 | -1.69E-46 |
| MS.gene052485 | MS.gene81859 | 0.80828 | 3.35E-50 | -1.69E-46 |
| MS.gene053073 | MS.gene81859 | 0.803579 | 3.26E-49 | -1.69E-46 |
| MS.gene053169 | MS.gene81859 | 0.817222 | 3.69E-52 | -1.69E-46 |
| MS.gene05316 | MS.gene81859 | 0.939995 | 4.96E-100 | -1.69E-46 |
| MS.gene053449 | MS.gene81859 | 0.828335 | 9.52E-55 | -1.69E-46 |
| MS.gene053494 | MS.gene81859 | 0.801041 | 1.09E-48 | -1.69E-46 |
| MS.gene053557 | MS.gene81859 | 0.830026 | 3.70E-55 | -1.69E-46 |
| MS.gene053758 | MS.gene81859 | 0.825157 | 5.46E-54 | -1.69E-46 |
| MS.gene053912 | MS.gene81859 | 0.846048 | 2.77E-59 | -1.69E-46 |
| MS.gene054123 | MS.gene81859 | 0.817101 | 3.93E-52 | -1.69E-46 |
| MS.gene054349 | MS.gene81859 | 0.842153 | 3.08E-58 | -1.69E-46 |
| MS.gene054556 | MS.gene81859 | 0.836303 | 1.01E-56 | -1.69E-46 |
| MS.gene055116 | MS.gene81859 | 0.82716 | 1.82E-54 | -1.69E-46 |
| MS.gene055666 | MS.gene81859 | 0.843872 | 1.07E-58 | -1.69E-46 |
| MS.gene055741 | MS.gene81859 | 0.802185 | 6.33E-49 | -1.69E-46 |
| MS.gene055744 | MS.gene81859 | 0.814232 | 1.71E-51 | -1.69E-46 |
| MS.gene055909 | MS.gene81859 | 0.820847 | 5.53E-53 | -1.69E-46 |
| MS.gene055911 | MS.gene81859 | 0.821387 | 4.15E-53 | -1.69E-46 |
| MS.gene056422 | MS.gene81859 | 0.823905 | 1.08E-53 | -1.69E-46 |
| MS.gene056447 | MS.gene81859 | 0.803605 | 3.22E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene81859 | 0.835465 | 1.65E-56 | -1.69E-46 |
| MS.gene056609 | MS.gene81859 | 0.812823 | 3.49E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene81859 | 0.821763 | 3.40E-53 | -1.69E-46 |
| MS.gene057396 | MS.gene81859 | 0.85761 | 1.45E-62 | -1.69E-46 |
| MS.gene057448 | MS.gene81859 | 0.856283 | 3.57E-62 | -1.69E-46 |
| MS.gene057449 | MS.gene81859 | 0.860634 | 1.80E-63 | -1.69E-46 |
| MS.gene057450 | MS.gene81859 | 0.852132 | 5.64E-61 | -1.69E-46 |
| MS.gene057537 | MS.gene81859 | 0.884726 | 1.50E-71 | -1.69E-46 |
| MS.gene057610 | MS.gene81859 | 0.828131 | 1.07E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene81859 | 0.802331 | 5.90E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene81859 | 0.800757 | 1.24E-48 | -1.69E-46 |
| MS.gene057927 | MS.gene81859 | 0.818929 | 1.52E-52 | -1.69E-46 |
| MS.gene058007 | MS.gene81859 | 0.838858 | 2.24E-57 | -1.69E-46 |
| MS.gene058075 | MS.gene81859 | 0.841809 | 3.79E-58 | -1.69E-46 |
| MS.gene058120 | MS.gene81859 | 0.819449 | 1.15E-52 | -1.69E-46 |
| MS.gene058459 | MS.gene81859 | 0.807204 | 5.66E-50 | -1.69E-46 |
| MS.gene058928 | MS.gene81859 | 0.865608 | 5.22E-65 | -1.69E-46 |
| MS.gene058948 | MS.gene81859 | 0.81162 | 6.39E-51 | -1.69E-46 |
| MS.gene058949 | MS.gene81859 | 0.838839 | 2.26E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene81859 | 0.813655 | 2.29E-51 | -1.69E-46 |
| MS.gene059285 | MS.gene81859 | 0.807951 | 3.93E-50 | -1.69E-46 |
| MS.gene059294 | MS.gene81859 | 0.813568 | 2.40E-51 | -1.69E-46 |
| MS.gene059366 | MS.gene81859 | 0.868943 | 4.48E-66 | -1.69E-46 |
| MS.gene059420 | MS.gene81859 | 0.807904 | 4.03E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene81859 | 0.825568 | 4.37E-54 | -1.69E-46 |
| MS.gene05959 | MS.gene81859 | 0.818442 | 1.96E-52 | -1.69E-46 |
| MS.gene059674 | MS.gene81859 | 0.852505 | 4.42E-61 | -1.69E-46 |
| MS.gene059676 | MS.gene81859 | 0.829528 | 4.89E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene81859 | 0.825239 | 5.23E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene81859 | 0.821871 | 3.21E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene81859 | 0.820061 | 8.37E-53 | -1.69E-46 |
| MS.gene059711 | MS.gene81859 | 0.84324 | 1.58E-58 | -1.69E-46 |
| MS.gene059788 | MS.gene81859 | 0.813156 | 2.95E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene81859 | 0.918908 | 8.71E-87 | -1.69E-46 |
| MS.gene05984 | MS.gene81859 | 0.807699 | 4.45E-50 | -1.69E-46 |
| MS.gene059876 | MS.gene81859 | 0.814048 | 1.88E-51 | -1.69E-46 |
| MS.gene059974 | MS.gene81859 | 0.803524 | 3.35E-49 | -1.69E-46 |
| MS.gene060247 | MS.gene81859 | 0.800979 | 1.12E-48 | -1.69E-46 |
| MS.gene060372 | MS.gene81859 | 0.800858 | 1.18E-48 | -1.69E-46 |
| MS.gene060495 | MS.gene81859 | 0.870054 | 1.95E-66 | -1.69E-46 |
| MS.gene060496 | MS.gene81859 | 0.80947 | 1.86E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene81859 | 0.833774 | 4.40E-56 | -1.69E-46 |
| MS.gene061041 | MS.gene81859 | 0.803236 | 3.84E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene81859 | 0.803781 | 2.96E-49 | -1.69E-46 |
| MS.gene061051 | MS.gene81859 | -0.849193 | 3.78E-60 | -1.69E-46 |
| MS.gene061154 | MS.gene81859 | 0.825852 | 3.74E-54 | -1.69E-46 |
| MS.gene061159 | MS.gene81859 | 0.839416 | 1.61E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81859.t1 | MTR_6g080430 | 97.241 | 870 | 20 | 3 | 1 | 867 | 1 | 869 | 0.0 | 1732 |
| MS.gene81859.t1 | MTR_8g106680 | 67.423 | 881 | 253 | 16 | 7 | 867 | 4 | 870 | 0.0 | 1086 |
| MS.gene81859.t1 | MTR_4g125670 | 26.971 | 482 | 212 | 18 | 516 | 864 | 593 | 1067 | 5.71e-33 | 138 |
| MS.gene81859.t1 | MTR_4g125670 | 25.428 | 409 | 253 | 11 | 106 | 473 | 50 | 447 | 5.13e-23 | 106 |
| MS.gene81859.t1 | MTR_1g015120 | 27.098 | 417 | 218 | 12 | 512 | 864 | 644 | 1038 | 2.47e-31 | 132 |
| MS.gene81859.t1 | MTR_1g015120 | 28.453 | 362 | 199 | 13 | 79 | 420 | 44 | 365 | 6.44e-25 | 112 |
| MS.gene81859.t1 | MTR_2g040970 | 35.196 | 179 | 113 | 1 | 101 | 279 | 69 | 244 | 7.25e-30 | 128 |
| MS.gene81859.t1 | MTR_2g040970 | 23.368 | 475 | 211 | 13 | 517 | 852 | 704 | 1164 | 3.79e-26 | 116 |
| MS.gene81859.t1 | MTR_2g040970 | 35.196 | 179 | 113 | 1 | 101 | 279 | 69 | 244 | 8.46e-30 | 128 |
| MS.gene81859.t1 | MTR_2g040970 | 29.189 | 185 | 117 | 4 | 517 | 692 | 704 | 883 | 7.11e-18 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81859.t1 | AT1G42550 | 51.624 | 893 | 354 | 23 | 1 | 866 | 1 | 842 | 0.0 | 795 |
| MS.gene81859.t1 | AT5G20610 | 26.366 | 421 | 209 | 13 | 1 | 395 | 1 | 346 | 4.78e-29 | 125 |
| MS.gene81859.t1 | AT5G20610 | 33.684 | 190 | 119 | 3 | 512 | 697 | 701 | 887 | 2.93e-22 | 103 |
| MS.gene81859.t1 | AT5G26160 | 34.568 | 162 | 102 | 2 | 118 | 278 | 72 | 230 | 1.51e-25 | 114 |
| MS.gene81859.t1 | AT5G26160 | 23.884 | 448 | 283 | 15 | 446 | 848 | 508 | 942 | 1.26e-18 | 92.0 |
| MS.gene81859.t1 | AT5G26160 | 34.568 | 162 | 102 | 2 | 118 | 278 | 72 | 230 | 1.52e-25 | 114 |
| MS.gene81859.t1 | AT5G26160 | 23.778 | 450 | 285 | 15 | 444 | 848 | 506 | 942 | 1.32e-18 | 91.7 |
| MS.gene81859.t1 | AT5G26160 | 34.568 | 162 | 102 | 2 | 118 | 278 | 72 | 230 | 1.52e-25 | 114 |
| MS.gene81859.t1 | AT5G26160 | 23.778 | 450 | 285 | 15 | 444 | 848 | 506 | 942 | 1.32e-18 | 91.7 |
Find 154 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATTTCTGTTTGTGATTCT+TGG | 0.170020 | 6.4:+54382040 | None:intergenic |
| AAACAACTCTAATCCATTTA+AGG | 0.173944 | 6.4:+54381307 | None:intergenic |
| GATTCAAATCATCGATTTCT+TGG | 0.189216 | 6.4:+54381978 | None:intergenic |
| AGAGGATTTCAACAGGAATT+TGG | 0.206595 | 6.4:-54381064 | MS.gene81859:CDS |
| GGAAAACATGCATTGGTAAA+AGG | 0.216506 | 6.4:-54380504 | MS.gene81859:CDS |
| ATGCAATGGTTGATTGAATA+TGG | 0.219889 | 6.4:-54380549 | MS.gene81859:CDS |
| ACATCACAAGACTCCTTAAA+TGG | 0.236280 | 6.4:-54381320 | MS.gene81859:CDS |
| TATGGAATTGGAAACCTATT+AGG | 0.249099 | 6.4:-54382648 | MS.gene81859:CDS |
| ATTAGGGCAATTTCTCATAT+TGG | 0.253080 | 6.4:-54382631 | MS.gene81859:CDS |
| GATGCTAAAGAGCTTGATTT+TGG | 0.270366 | 6.4:-54382337 | MS.gene81859:CDS |
| GAAGCTAGGATTTCAAATTA+TGG | 0.280085 | 6.4:-54382185 | MS.gene81859:CDS |
| AATGCAGAAAATTGAGTTCA+TGG | 0.297933 | 6.4:-54380994 | MS.gene81859:CDS |
| AGTTTGAGCCAAGACCATTT+TGG | 0.305461 | 6.4:-54382378 | MS.gene81859:CDS |
| ATATGAGAAATTGCCCTAAT+AGG | 0.309054 | 6.4:+54382634 | None:intergenic |
| ATTAGAGTTGTTTCAGAAAC+TGG | 0.313646 | 6.4:-54381297 | MS.gene81859:CDS |
| GACATTTGCATTGCTAGCTT+TGG | 0.317570 | 6.4:+54381359 | None:intergenic |
| TTTGATGAAAGAACAAATTC+AGG | 0.324946 | 6.4:-54382688 | MS.gene81859:CDS |
| TTCTAGCTGTTGTGTGTGAT+TGG | 0.336318 | 6.4:+54382917 | None:intergenic |
| AAGCTAGGATTTCAAATTAT+GGG | 0.339335 | 6.4:-54382184 | MS.gene81859:CDS |
| CAAGTGTATCTTCCTGATCT+TGG | 0.343319 | 6.4:-54381473 | MS.gene81859:CDS |
| TATGAATGATGAACTGGATT+TGG | 0.346197 | 6.4:+54381944 | None:intergenic |
| TTACCTATCAGTTCATCTAT+TGG | 0.347014 | 6.4:+54381227 | None:intergenic |
| TTCACTTGCTAAGCAGATAA+AGG | 0.350530 | 6.4:-54381705 | MS.gene81859:CDS |
| TCCTTGACAATTTCACTTGA+AGG | 0.360120 | 6.4:+54381773 | None:intergenic |
| AAGCGCTGCGCGGATAGTTT+CGG | 0.361948 | 6.4:-54381129 | MS.gene81859:CDS |
| CTGTTTGTGATTCTTGGACT+AGG | 0.370563 | 6.4:+54382046 | None:intergenic |
| CTTTAGCATCAACTGCAAAA+AGG | 0.371050 | 6.4:+54382350 | None:intergenic |
| TGGTTGATTGAATATGGATT+AGG | 0.377800 | 6.4:-54380543 | MS.gene81859:CDS |
| TGACACAGAATCACAAAGAT+TGG | 0.380579 | 6.4:-54381645 | MS.gene81859:CDS |
| TTGCTTTCTGATTGAGTTGA+GGG | 0.381185 | 6.4:+54382715 | None:intergenic |
| ATGGCGAATGCAATGAGTTT+AGG | 0.385047 | 6.4:-54381095 | MS.gene81859:CDS |
| CCTGATCTTGGAAAAGGCTT+AGG | 0.389440 | 6.4:-54381461 | MS.gene81859:CDS |
| ACAAAAGGAACTGAGGTTCT+TGG | 0.399972 | 6.4:+54382874 | None:intergenic |
| CTGAACATTGGAATTTCTCT+TGG | 0.400561 | 6.4:+54382978 | None:intergenic |
| TTATCATCTTTAGTAGTAGA+TGG | 0.400868 | 6.4:+54382850 | None:intergenic |
| TTAGAGCCTCTAGTTCTTCA+AGG | 0.402903 | 6.4:+54382953 | None:intergenic |
| TCAGCAAGTTTATTAGTAGA+TGG | 0.405104 | 6.4:+54381920 | None:intergenic |
| TTTGCTTTGTTCTCCCATCA+TGG | 0.411561 | 6.4:+54381673 | None:intergenic |
| TTGACTGAAGAAACTTCAAA+TGG | 0.412655 | 6.4:+54380924 | None:intergenic |
| ACAAGAAAGGGATATGGAAT+TGG | 0.413070 | 6.4:-54382660 | MS.gene81859:CDS |
| GAGTTCGAGGTTGTTGATAG+AGG | 0.414078 | 6.4:-54381863 | MS.gene81859:CDS |
| TTGTTAAGTGCAATTGATCA+TGG | 0.417669 | 6.4:+54381744 | None:intergenic |
| TTTCAAATTATGGGGAAAGA+TGG | 0.420725 | 6.4:-54382175 | MS.gene81859:CDS |
| GTATGAATTAACACCATCAT+AGG | 0.422907 | 6.4:+54380723 | None:intergenic |
| GACTCCTTCACAGAGAAGAT+TGG | 0.423545 | 6.4:-54382011 | MS.gene81859:CDS |
| GTGACAACAAGAAAGGGATA+TGG | 0.423970 | 6.4:-54382666 | MS.gene81859:CDS |
| CGAGCTACATAATTGTCTAA+AGG | 0.424685 | 6.4:+54381392 | None:intergenic |
| CTTTAAACAAGTTTAACATC+TGG | 0.426101 | 6.4:+54380414 | None:intergenic |
| GAAGTTTCTTCAGTCAAAGA+AGG | 0.427467 | 6.4:-54380918 | MS.gene81859:CDS |
| AGAATTTGAAGCCTAGTAGT+AGG | 0.427655 | 6.4:-54382126 | MS.gene81859:CDS |
| CTGCTATTTCACTAGAGGAT+TGG | 0.429356 | 6.4:-54380869 | MS.gene81859:CDS |
| ATGGAATTGGAAACCTATTA+GGG | 0.430442 | 6.4:-54382647 | MS.gene81859:CDS |
| CTTAATCCATTCATTGATGA+AGG | 0.431366 | 6.4:+54382553 | None:intergenic |
| GAAAACATGCATTGGTAAAA+GGG | 0.433928 | 6.4:-54380503 | MS.gene81859:CDS |
| GAATATGGATTAGGAAAGGC+AGG | 0.436150 | 6.4:-54380534 | MS.gene81859:CDS |
| CAATTGATTCTTGAACCAAC+TGG | 0.437324 | 6.4:+54382293 | None:intergenic |
| TCCCTTCCTTCATCAATGAA+TGG | 0.439406 | 6.4:-54382559 | MS.gene81859:CDS |
| CTATCAACAACCTCGAACTC+TGG | 0.443060 | 6.4:+54381866 | None:intergenic |
| AGACAAGAGAGGATTTCAAC+AGG | 0.445441 | 6.4:-54381071 | MS.gene81859:CDS |
| GATGGATATGAATGATGAAC+TGG | 0.445751 | 6.4:+54381938 | None:intergenic |
| TATTGCAATCAACAAGGTAA+TGG | 0.448877 | 6.4:-54382412 | MS.gene81859:CDS |
| TTAGGAAAGGCAGGGAAGAA+AGG | 0.450861 | 6.4:-54380525 | MS.gene81859:CDS |
| TCTTGTGATGTTAACACAAA+AGG | 0.450999 | 6.4:+54381332 | None:intergenic |
| TATCTTCCTGATCTTGGAAA+AGG | 0.460068 | 6.4:-54381467 | MS.gene81859:CDS |
| CTGTTCAAACAATGCCATCA+AGG | 0.476825 | 6.4:-54382489 | MS.gene81859:CDS |
| AGGCATGCTAAACGATGTCT+TGG | 0.478557 | 6.4:+54382066 | None:intergenic |
| GCACCTTGAGAAACCCTTGA+TGG | 0.478880 | 6.4:+54382475 | None:intergenic |
| TTTAAGGTGAGGAGTGGCAA+TGG | 0.480178 | 6.4:-54380615 | MS.gene81859:CDS |
| GCAAAGGTGGAATTTCAGAT+TGG | 0.482762 | 6.4:+54381546 | None:intergenic |
| CTCAGTGGATTTGAGCCAGT+TGG | 0.486575 | 6.4:-54382308 | MS.gene81859:CDS |
| AGTTTGCAAGGGAAAGCTAA+AGG | 0.488846 | 6.4:-54382223 | MS.gene81859:CDS |
| AATTCAGGTGACAACAAGAA+AGG | 0.489798 | 6.4:-54382673 | MS.gene81859:CDS |
| TTAGTAGTAGATGGAACAAA+AGG | 0.490782 | 6.4:+54382859 | None:intergenic |
| GCAATGGAAGGAAGAATGCT+TGG | 0.491920 | 6.4:-54380599 | MS.gene81859:CDS |
| TGCGACGCGACCGAGGTTTG+TGG | 0.494307 | 6.4:+54382794 | None:intergenic |
| AGGTATATCCAAAATGGTCT+TGG | 0.495736 | 6.4:+54382370 | None:intergenic |
| ATCCATTCATTGATGAAGGA+AGG | 0.495766 | 6.4:+54382557 | None:intergenic |
| GGAGAGCTGGTTGTGAAGCT+AGG | 0.500585 | 6.4:-54382199 | MS.gene81859:CDS |
| ATCGGCAAGGAAATCGAGTT+AGG | 0.500647 | 6.4:-54382264 | MS.gene81859:CDS |
| TCTTGATCTTCCAGAGTTCG+AGG | 0.501784 | 6.4:-54381876 | MS.gene81859:CDS |
| ACAAATCAAGAAGATGCAAC+TGG | 0.502022 | 6.4:-54382745 | MS.gene81859:CDS |
| AGAAAGAAAGAGAATAAAGA+TGG | 0.506391 | 6.4:-54382514 | MS.gene81859:CDS |
| ATGCCAATAGATGAACTGAT+AGG | 0.507132 | 6.4:-54381230 | MS.gene81859:CDS |
| GAAAGCTAAAGGAGGAGAGC+TGG | 0.509145 | 6.4:-54382212 | MS.gene81859:CDS |
| TTCTTCAAGGAGCTGAACAT+TGG | 0.510394 | 6.4:+54382966 | None:intergenic |
| ATTGCTTTCTGATTGAGTTG+AGG | 0.513069 | 6.4:+54382714 | None:intergenic |
| GAAGAGAAGAAAGAAGATGA+AGG | 0.517230 | 6.4:-54381830 | MS.gene81859:CDS |
| TCCATTCATTGATGAAGGAA+GGG | 0.521094 | 6.4:+54382558 | None:intergenic |
| ATTCAGGTGACAACAAGAAA+GGG | 0.521622 | 6.4:-54382672 | MS.gene81859:CDS |
| CTGTTGTGTGTGATTGGTAA+AGG | 0.525386 | 6.4:+54382923 | None:intergenic |
| AGGTGAGGAGTGGCAATGGA+AGG | 0.527017 | 6.4:-54380611 | MS.gene81859:CDS |
| CAAATTATGGGGAAAGATGG+AGG | 0.529279 | 6.4:-54382172 | MS.gene81859:CDS |
| TGTTGTGTGTGATTGGTAAA+GGG | 0.529701 | 6.4:+54382924 | None:intergenic |
| ACTTGCTGATGACAAAGAAA+AGG | 0.530542 | 6.4:-54381906 | MS.gene81859:CDS |
| GAGCATTTCATCAAGAATCA+TGG | 0.531039 | 6.4:-54380466 | MS.gene81859:CDS |
| TCACAAACAGAAATGATGCT+TGG | 0.533449 | 6.4:-54382033 | MS.gene81859:CDS |
| ATGAAGATGATGAGGAAAAG+AGG | 0.538272 | 6.4:-54380668 | MS.gene81859:CDS |
| GAAACAAGCTTTAGTTTGCA+AGG | 0.539137 | 6.4:-54382235 | MS.gene81859:CDS |
| CAATGGAAGGAAGAATGCTT+GGG | 0.540671 | 6.4:-54380598 | MS.gene81859:CDS |
| GAAGAAAGGAAAACATGCAT+TGG | 0.544146 | 6.4:-54380511 | MS.gene81859:CDS |
| GAGTTCTGCTATTTCACTAG+AGG | 0.544818 | 6.4:-54380874 | MS.gene81859:CDS |
| AAGTTTCTTCAGTCAAAGAA+GGG | 0.545160 | 6.4:-54380917 | MS.gene81859:CDS |
| CGAAGATATGAAGCAGTTGG+AGG | 0.545991 | 6.4:-54380747 | MS.gene81859:CDS |
| AAAGGCTCTTGAATCCATGA+TGG | 0.546098 | 6.4:-54381687 | MS.gene81859:CDS |
| TAAAAGGGCAAGATTTGTTG+TGG | 0.547889 | 6.4:-54380488 | MS.gene81859:CDS |
| CAAGAATCATGGCTGATATG+TGG | 0.554668 | 6.4:-54380455 | MS.gene81859:CDS |
| ACAACAAATGTGGACACAAA+GGG | 0.555483 | 6.4:-54380702 | MS.gene81859:CDS |
| TCCGCCAATCTTCTCTGTGA+AGG | 0.559824 | 6.4:+54382007 | None:intergenic |
| AAGAAAGAAGATGAAGGAGA+AGG | 0.560474 | 6.4:-54381824 | MS.gene81859:CDS |
| AAGGAAATCGAGTTAGGCAG+TGG | 0.560767 | 6.4:-54382258 | MS.gene81859:CDS |
| TGGAAAAGGCTTAGGTTGTG+TGG | 0.563817 | 6.4:-54381453 | MS.gene81859:CDS |
| AAACAAGCTTTAGTTTGCAA+GGG | 0.571339 | 6.4:-54382234 | MS.gene81859:CDS |
| TGTGTGGTTCAAACAAGAGA+TGG | 0.571908 | 6.4:-54381437 | MS.gene81859:CDS |
| ATAGCTTCTGCTATCATACA+AGG | 0.577908 | 6.4:-54381176 | MS.gene81859:CDS |
| ACTGCTTCATATCTTCGTAT+CGG | 0.578152 | 6.4:+54380753 | None:intergenic |
| ATACAAGGTAGAAACAAAGA+AGG | 0.578846 | 6.4:-54381161 | MS.gene81859:CDS |
| CAAAGTAAGTAGCATGCATG+TGG | 0.579362 | 6.4:-54380643 | MS.gene81859:CDS |
| TCCTTCACAGAGAAGATTGG+CGG | 0.579560 | 6.4:-54382008 | MS.gene81859:CDS |
| GAAGCATTGAAAATTCAAGC+TGG | 0.579757 | 6.4:-54380966 | MS.gene81859:CDS |
| AGCTAGGATTTCAAATTATG+GGG | 0.581391 | 6.4:-54382183 | MS.gene81859:CDS |
| ATACGAAGATATGAAGCAGT+TGG | 0.582036 | 6.4:-54380750 | MS.gene81859:CDS |
| AAAGGCTAACTTCAATGCAA+TGG | 0.582504 | 6.4:-54380563 | MS.gene81859:CDS |
| GTTAATTCATACAACAAATG+TGG | 0.583537 | 6.4:-54380712 | MS.gene81859:CDS |
| TACAACAAATGTGGACACAA+AGG | 0.583821 | 6.4:-54380703 | MS.gene81859:CDS |
| CATCAATGAGAAAATTTGAG+AGG | 0.584644 | 6.4:+54381250 | None:intergenic |
| GTCGCATGTCCTTATCTCCA+TGG | 0.585797 | 6.4:-54382777 | MS.gene81859:CDS |
| TGTTCAAACAATGCCATCAA+GGG | 0.586202 | 6.4:-54382488 | MS.gene81859:CDS |
| GATTGAATATGGATTAGGAA+AGG | 0.591896 | 6.4:-54380538 | MS.gene81859:CDS |
| TGCTGATGACAAAGAAAAGG+TGG | 0.592702 | 6.4:-54381903 | MS.gene81859:CDS |
| GATGATAATTCTTCATCATG+TGG | 0.594745 | 6.4:-54381509 | MS.gene81859:CDS |
| TCATGTTCTTCAAGATGCAA+AGG | 0.596262 | 6.4:+54381530 | None:intergenic |
| ACCTTCAAGTGAAATTGTCA+AGG | 0.601896 | 6.4:-54381774 | MS.gene81859:CDS |
| CATGTTTATTGCAATCAACA+AGG | 0.603699 | 6.4:-54382418 | MS.gene81859:CDS |
| AAGGCTCTTGAATCCATGAT+GGG | 0.604383 | 6.4:-54381686 | MS.gene81859:CDS |
| CTTGGGAGAGTGAGAAACAA+AGG | 0.606419 | 6.4:-54380581 | MS.gene81859:CDS |
| AGAGTTTCTTCATATGCTTG+AGG | 0.610639 | 6.4:-54381597 | MS.gene81859:CDS |
| TGTTCTTCAAGATGCAAAGG+TGG | 0.611191 | 6.4:+54381533 | None:intergenic |
| TGAGTTTAGGAAGACAAGAG+AGG | 0.624659 | 6.4:-54381082 | MS.gene81859:CDS |
| TCAGCTCCTTGAAGAACTAG+AGG | 0.632926 | 6.4:-54382959 | MS.gene81859:CDS |
| AGCAGTTGGAGGACCTATGA+TGG | 0.635675 | 6.4:-54380736 | MS.gene81859:CDS |
| GTCGAGCGAACGAAGATGTG+AGG | 0.635938 | 6.4:+54382095 | None:intergenic |
| AAGGACATGCGACGCGACCG+AGG | 0.637757 | 6.4:+54382787 | None:intergenic |
| AGTTTCGGCATTGAAAGACA+TGG | 0.642413 | 6.4:-54381114 | MS.gene81859:CDS |
| AAAGTAAGTAGCATGCATGT+GGG | 0.642780 | 6.4:-54380642 | MS.gene81859:CDS |
| TGATGACAAAGAAAAGGTGG+AGG | 0.643767 | 6.4:-54381900 | MS.gene81859:CDS |
| ATGCCATCAAGGGTTTCTCA+AGG | 0.644801 | 6.4:-54382478 | MS.gene81859:CDS |
| GTGGTTCAAACAAGAGATGG+AGG | 0.648990 | 6.4:-54381434 | MS.gene81859:CDS |
| TGATCATGATGAAGATGATG+AGG | 0.656905 | 6.4:-54380676 | MS.gene81859:CDS |
| GTAAGTAGCATGCATGTGGG+AGG | 0.667243 | 6.4:-54380639 | MS.gene81859:CDS |
| AGATGGAACAAAAGGAACTG+AGG | 0.670522 | 6.4:+54382867 | None:intergenic |
| AGGAAATCGAGTTAGGCAGT+GGG | 0.673151 | 6.4:-54382257 | MS.gene81859:CDS |
| AATATGGATTAGGAAAGGCA+GGG | 0.686442 | 6.4:-54380533 | MS.gene81859:CDS |
| GAGCAAGTTCAAGCGCTGCG+CGG | 0.689676 | 6.4:-54381139 | MS.gene81859:CDS |
| TTGCAAGGGAAAGCTAAAGG+AGG | 0.699520 | 6.4:-54382220 | MS.gene81859:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATCAATTGAGAAAAAT+CGG | - | chr6.4:54381131-54381150 | MS.gene81859:CDS | 20.0% |
| ! | AAACAACTCTAATCCATTTA+AGG | + | chr6.4:54382109-54382128 | None:intergenic | 25.0% |
| ! | AAGCTAGGATTTCAAATTAT+GGG | - | chr6.4:54381229-54381248 | MS.gene81859:CDS | 25.0% |
| ! | AGAAAGAAAGAGAATAAAGA+TGG | - | chr6.4:54380899-54380918 | MS.gene81859:CDS | 25.0% |
| ! | GTTAATTCATACAACAAATG+TGG | - | chr6.4:54382701-54382720 | MS.gene81859:CDS | 25.0% |
| ! | TTATCATCTTTAGTAGTAGA+TGG | + | chr6.4:54380566-54380585 | None:intergenic | 25.0% |
| ! | TTTGATGAAAGAACAAATTC+AGG | - | chr6.4:54380725-54380744 | MS.gene81859:CDS | 25.0% |
| !!! | AATTAGTGTTTTTAGAGCTT+TGG | + | chr6.4:54382578-54382597 | None:intergenic | 25.0% |
| !!! | TGATTTGTTTTTGATTTCCA+TGG | + | chr6.4:54380656-54380675 | None:intergenic | 25.0% |
| !!! | TTGAAGAAACACTTTTTCTA+AGG | - | chr6.4:54380969-54380988 | MS.gene81859:CDS | 25.0% |
| AAGTTTCTTCAGTCAAAGAA+GGG | - | chr6.4:54382496-54382515 | MS.gene81859:CDS | 30.0% | |
| AATGCAGAAAATTGAGTTCA+TGG | - | chr6.4:54382419-54382438 | MS.gene81859:CDS | 30.0% | |
| AGCTAGGATTTCAAATTATG+GGG | - | chr6.4:54381230-54381249 | MS.gene81859:CDS | 30.0% | |
| ATACAAGGTAGAAACAAAGA+AGG | - | chr6.4:54382252-54382271 | MS.gene81859:CDS | 30.0% | |
| ATATGAGAAATTGCCCTAAT+AGG | + | chr6.4:54380782-54380801 | None:intergenic | 30.0% | |
| ATGCAATGGTTGATTGAATA+TGG | - | chr6.4:54382864-54382883 | MS.gene81859:CDS | 30.0% | |
| ATGGAATTGGAAACCTATTA+GGG | - | chr6.4:54380766-54380785 | MS.gene81859:CDS | 30.0% | |
| ATTAGGGCAATTTCTCATAT+TGG | - | chr6.4:54380782-54380801 | MS.gene81859:CDS | 30.0% | |
| CATCAATGAGAAAATTTGAG+AGG | + | chr6.4:54382166-54382185 | None:intergenic | 30.0% | |
| CATGTTTATTGCAATCAACA+AGG | - | chr6.4:54380995-54381014 | MS.gene81859:CDS | 30.0% | |
| CTTAATCCATTCATTGATGA+AGG | + | chr6.4:54380863-54380882 | None:intergenic | 30.0% | |
| GAAGCTAGGATTTCAAATTA+TGG | - | chr6.4:54381228-54381247 | MS.gene81859:CDS | 30.0% | |
| GATGATAATTCTTCATCATG+TGG | - | chr6.4:54381904-54381923 | MS.gene81859:CDS | 30.0% | |
| GTATGAATTAACACCATCAT+AGG | + | chr6.4:54382693-54382712 | None:intergenic | 30.0% | |
| TATGAATGATGAACTGGATT+TGG | + | chr6.4:54381472-54381491 | None:intergenic | 30.0% | |
| TATGGAATTGGAAACCTATT+AGG | - | chr6.4:54380765-54380784 | MS.gene81859:CDS | 30.0% | |
| TATTGCAATCAACAAGGTAA+TGG | - | chr6.4:54381001-54381020 | MS.gene81859:CDS | 30.0% | |
| TCAGCAAGTTTATTAGTAGA+TGG | + | chr6.4:54381496-54381515 | None:intergenic | 30.0% | |
| TCATTTCTGTTTGTGATTCT+TGG | + | chr6.4:54381376-54381395 | None:intergenic | 30.0% | |
| TCTTGTGATGTTAACACAAA+AGG | + | chr6.4:54382084-54382103 | None:intergenic | 30.0% | |
| TGGTTGATTGAATATGGATT+AGG | - | chr6.4:54382870-54382889 | MS.gene81859:CDS | 30.0% | |
| TTACCTATCAGTTCATCTAT+TGG | + | chr6.4:54382189-54382208 | None:intergenic | 30.0% | |
| TTAGTAGTAGATGGAACAAA+AGG | + | chr6.4:54380557-54380576 | None:intergenic | 30.0% | |
| TTGACTGAAGAAACTTCAAA+TGG | + | chr6.4:54382492-54382511 | None:intergenic | 30.0% | |
| TTGTTAAGTGCAATTGATCA+TGG | + | chr6.4:54381672-54381691 | None:intergenic | 30.0% | |
| TTTCAAATTATGGGGAAAGA+TGG | - | chr6.4:54381238-54381257 | MS.gene81859:CDS | 30.0% | |
| ! | ATTAGAGTTGTTTCAGAAAC+TGG | - | chr6.4:54382116-54382135 | MS.gene81859:CDS | 30.0% |
| ! | CTCAATTTTCTGCATTGTAA+AGG | + | chr6.4:54382415-54382434 | None:intergenic | 30.0% |
| ! | GAAAACATGCATTGGTAAAA+GGG | - | chr6.4:54382910-54382929 | MS.gene81859:CDS | 30.0% |
| ! | GCAAAAAGGTATATCCAAAA+TGG | + | chr6.4:54381052-54381071 | None:intergenic | 30.0% |
| !! | AAACAAGCTTTAGTTTGCAA+GGG | - | chr6.4:54381179-54381198 | MS.gene81859:CDS | 30.0% |
| !! | GATTCAAATCATCGATTTCT+TGG | + | chr6.4:54381438-54381457 | None:intergenic | 30.0% |
| !! | GATTGAATATGGATTAGGAA+AGG | - | chr6.4:54382875-54382894 | MS.gene81859:CDS | 30.0% |
| !!! | TTTTGATTTCCATGGAGATA+AGG | + | chr6.4:54380648-54380667 | None:intergenic | 30.0% |
| AAAGGCTAACTTCAATGCAA+TGG | - | chr6.4:54382850-54382869 | MS.gene81859:CDS | 35.0% | |
| AAAGTAAGTAGCATGCATGT+GGG | - | chr6.4:54382771-54382790 | MS.gene81859:CDS | 35.0% | |
| AAGAAAGAAGATGAAGGAGA+AGG | - | chr6.4:54381589-54381608 | MS.gene81859:CDS | 35.0% | |
| AATTCAGGTGACAACAAGAA+AGG | - | chr6.4:54380740-54380759 | MS.gene81859:CDS | 35.0% | |
| ACAAATCAAGAAGATGCAAC+TGG | - | chr6.4:54380668-54380687 | MS.gene81859:CDS | 35.0% | |
| ACAACAAATGTGGACACAAA+GGG | - | chr6.4:54382711-54382730 | MS.gene81859:CDS | 35.0% | |
| ACAAGAAAGGGATATGGAAT+TGG | - | chr6.4:54380753-54380772 | MS.gene81859:CDS | 35.0% | |
| ACATCACAAGACTCCTTAAA+TGG | - | chr6.4:54382093-54382112 | MS.gene81859:CDS | 35.0% | |
| ACCTTCAAGTGAAATTGTCA+AGG | - | chr6.4:54381639-54381658 | MS.gene81859:CDS | 35.0% | |
| ACTGCTTCATATCTTCGTAT+CGG | + | chr6.4:54382663-54382682 | None:intergenic | 35.0% | |
| AGAGGATTTCAACAGGAATT+TGG | - | chr6.4:54382349-54382368 | MS.gene81859:CDS | 35.0% | |
| AGAGTTTCTTCATATGCTTG+AGG | - | chr6.4:54381816-54381835 | MS.gene81859:CDS | 35.0% | |
| AGGTATATCCAAAATGGTCT+TGG | + | chr6.4:54381046-54381065 | None:intergenic | 35.0% | |
| ATACGAAGATATGAAGCAGT+TGG | - | chr6.4:54382663-54382682 | MS.gene81859:CDS | 35.0% | |
| ATAGCTTCTGCTATCATACA+AGG | - | chr6.4:54382237-54382256 | MS.gene81859:CDS | 35.0% | |
| ATCCATTCATTGATGAAGGA+AGG | + | chr6.4:54380859-54380878 | None:intergenic | 35.0% | |
| ATGAAGATGATGAGGAAAAG+AGG | - | chr6.4:54382745-54382764 | MS.gene81859:CDS | 35.0% | |
| ATGCCAATAGATGAACTGAT+AGG | - | chr6.4:54382183-54382202 | MS.gene81859:CDS | 35.0% | |
| ATTCAGGTGACAACAAGAAA+GGG | - | chr6.4:54380741-54380760 | MS.gene81859:CDS | 35.0% | |
| CGAGCTACATAATTGTCTAA+AGG | + | chr6.4:54382024-54382043 | None:intergenic | 35.0% | |
| CTGAACATTGGAATTTCTCT+TGG | + | chr6.4:54380438-54380457 | None:intergenic | 35.0% | |
| CTTTAGCATCAACTGCAAAA+AGG | + | chr6.4:54381066-54381085 | None:intergenic | 35.0% | |
| GAAGAAAGGAAAACATGCAT+TGG | - | chr6.4:54382902-54382921 | MS.gene81859:CDS | 35.0% | |
| GAAGAGAAGAAAGAAGATGA+AGG | - | chr6.4:54381583-54381602 | MS.gene81859:CDS | 35.0% | |
| GAAGTTTCTTCAGTCAAAGA+AGG | - | chr6.4:54382495-54382514 | MS.gene81859:CDS | 35.0% | |
| GAGCATTTCATCAAGAATCA+TGG | - | chr6.4:54382947-54382966 | MS.gene81859:CDS | 35.0% | |
| GATGGATATGAATGATGAAC+TGG | + | chr6.4:54381478-54381497 | None:intergenic | 35.0% | |
| TACAACAAATGTGGACACAA+AGG | - | chr6.4:54382710-54382729 | MS.gene81859:CDS | 35.0% | |
| TATCTTCCTGATCTTGGAAA+AGG | - | chr6.4:54381946-54381965 | MS.gene81859:CDS | 35.0% | |
| TCAATTGAGAAAAATCGGCA+AGG | - | chr6.4:54381136-54381155 | MS.gene81859:CDS | 35.0% | |
| TCACAAACAGAAATGATGCT+TGG | - | chr6.4:54381380-54381399 | MS.gene81859:CDS | 35.0% | |
| TCATGTTCTTCAAGATGCAA+AGG | + | chr6.4:54381886-54381905 | None:intergenic | 35.0% | |
| TCCATTCATTGATGAAGGAA+GGG | + | chr6.4:54380858-54380877 | None:intergenic | 35.0% | |
| TCCTTGACAATTTCACTTGA+AGG | + | chr6.4:54381643-54381662 | None:intergenic | 35.0% | |
| TGACACAGAATCACAAAGAT+TGG | - | chr6.4:54381768-54381787 | MS.gene81859:CDS | 35.0% | |
| TGATCATGATGAAGATGATG+AGG | - | chr6.4:54382737-54382756 | MS.gene81859:CDS | 35.0% | |
| TGTTCAAACAATGCCATCAA+GGG | - | chr6.4:54380925-54380944 | MS.gene81859:CDS | 35.0% | |
| TGTTGTGTGTGATTGGTAAA+GGG | + | chr6.4:54380492-54380511 | None:intergenic | 35.0% | |
| ! | ACTTGCTGATGACAAAGAAA+AGG | - | chr6.4:54381507-54381526 | MS.gene81859:CDS | 35.0% |
| ! | AGAATTTGAAGCCTAGTAGT+AGG | - | chr6.4:54381287-54381306 | MS.gene81859:CDS | 35.0% |
| ! | AGAATTTTCTCTGCAGTTAG+TGG | + | chr6.4:54382390-54382409 | None:intergenic | 35.0% |
| ! | AGGTTTTTGAACCTACTACT+AGG | + | chr6.4:54381301-54381320 | None:intergenic | 35.0% |
| ! | ATTGCTTTCTGATTGAGTTG+AGG | + | chr6.4:54380702-54380721 | None:intergenic | 35.0% |
| ! | CAATTGATTCTTGAACCAAC+TGG | + | chr6.4:54381123-54381142 | None:intergenic | 35.0% |
| ! | GATGCTAAAGAGCTTGATTT+TGG | - | chr6.4:54381076-54381095 | MS.gene81859:CDS | 35.0% |
| ! | GGAAAACATGCATTGGTAAA+AGG | - | chr6.4:54382909-54382928 | MS.gene81859:CDS | 35.0% |
| ! | TTCACTTGCTAAGCAGATAA+AGG | - | chr6.4:54381708-54381727 | MS.gene81859:CDS | 35.0% |
| !! | AATATGGATTAGGAAAGGCA+GGG | - | chr6.4:54382880-54382899 | MS.gene81859:CDS | 35.0% |
| !! | GAAACAAGCTTTAGTTTGCA+AGG | - | chr6.4:54381178-54381197 | MS.gene81859:CDS | 35.0% |
| !! | GAAGCATTGAAAATTCAAGC+TGG | - | chr6.4:54382447-54382466 | MS.gene81859:CDS | 35.0% |
| !! | TAAAAGGGCAAGATTTGTTG+TGG | - | chr6.4:54382925-54382944 | MS.gene81859:CDS | 35.0% |
| !! | TGATTTTGGAAGAAACTCAG+TGG | - | chr6.4:54381090-54381109 | MS.gene81859:CDS | 35.0% |
| !! | TTGCTTTCTGATTGAGTTGA+GGG | + | chr6.4:54380701-54380720 | None:intergenic | 35.0% |
| AAAGGCTCTTGAATCCATGA+TGG | - | chr6.4:54381726-54381745 | MS.gene81859:CDS | 40.0% | |
| AAGGCTCTTGAATCCATGAT+GGG | - | chr6.4:54381727-54381746 | MS.gene81859:CDS | 40.0% | |
| ACAAAAACAGCCACAAACCT+CGG | - | chr6.4:54380609-54380628 | MS.gene81859:CDS | 40.0% | |
| ACAAAAGGAACTGAGGTTCT+TGG | + | chr6.4:54380542-54380561 | None:intergenic | 40.0% | |
| AGACAAGAGAGGATTTCAAC+AGG | - | chr6.4:54382342-54382361 | MS.gene81859:CDS | 40.0% | |
| AGATGGAACAAAAGGAACTG+AGG | + | chr6.4:54380549-54380568 | None:intergenic | 40.0% | |
| AGTTTGCAAGGGAAAGCTAA+AGG | - | chr6.4:54381190-54381209 | MS.gene81859:CDS | 40.0% | |
| ATGGCGAATGCAATGAGTTT+AGG | - | chr6.4:54382318-54382337 | MS.gene81859:CDS | 40.0% | |
| CAAAGTAAGTAGCATGCATG+TGG | - | chr6.4:54382770-54382789 | MS.gene81859:CDS | 40.0% | |
| CAAATTATGGGGAAAGATGG+AGG | - | chr6.4:54381241-54381260 | MS.gene81859:CDS | 40.0% | |
| CAAGAATCATGGCTGATATG+TGG | - | chr6.4:54382958-54382977 | MS.gene81859:CDS | 40.0% | |
| CAAGTGTATCTTCCTGATCT+TGG | - | chr6.4:54381940-54381959 | MS.gene81859:CDS | 40.0% | |
| CAATGGAAGGAAGAATGCTT+GGG | - | chr6.4:54382815-54382834 | MS.gene81859:CDS | 40.0% | |
| CTGTTCAAACAATGCCATCA+AGG | - | chr6.4:54380924-54380943 | MS.gene81859:CDS | 40.0% | |
| CTGTTGTGTGTGATTGGTAA+AGG | + | chr6.4:54380493-54380512 | None:intergenic | 40.0% | |
| CTGTTTGTGATTCTTGGACT+AGG | + | chr6.4:54381370-54381389 | None:intergenic | 40.0% | |
| GCAAAGGTGGAATTTCAGAT+TGG | + | chr6.4:54381870-54381889 | None:intergenic | 40.0% | |
| GTGACAACAAGAAAGGGATA+TGG | - | chr6.4:54380747-54380766 | MS.gene81859:CDS | 40.0% | |
| TCCCTTCCTTCATCAATGAA+TGG | - | chr6.4:54380854-54380873 | MS.gene81859:CDS | 40.0% | |
| TGAGTTTAGGAAGACAAGAG+AGG | - | chr6.4:54382331-54382350 | MS.gene81859:CDS | 40.0% | |
| TGATGACAAAGAAAAGGTGG+AGG | - | chr6.4:54381513-54381532 | MS.gene81859:CDS | 40.0% | |
| TGCTGATGACAAAGAAAAGG+TGG | - | chr6.4:54381510-54381529 | MS.gene81859:CDS | 40.0% | |
| TGTGTGGTTCAAACAAGAGA+TGG | - | chr6.4:54381976-54381995 | MS.gene81859:CDS | 40.0% | |
| TGTTCTTCAAGATGCAAAGG+TGG | + | chr6.4:54381883-54381902 | None:intergenic | 40.0% | |
| TTCTTCAAGGAGCTGAACAT+TGG | + | chr6.4:54380450-54380469 | None:intergenic | 40.0% | |
| ! | AGTTTCGGCATTGAAAGACA+TGG | - | chr6.4:54382299-54382318 | MS.gene81859:CDS | 40.0% |
| ! | AGTTTGAGCCAAGACCATTT+TGG | - | chr6.4:54381035-54381054 | MS.gene81859:CDS | 40.0% |
| ! | GACATTTGCATTGCTAGCTT+TGG | + | chr6.4:54382057-54382076 | None:intergenic | 40.0% |
| ! | TTCTAGCTGTTGTGTGTGAT+TGG | + | chr6.4:54380499-54380518 | None:intergenic | 40.0% |
| ! | TTTGCTTTGTTCTCCCATCA+TGG | + | chr6.4:54381743-54381762 | None:intergenic | 40.0% |
| !! | CTGCTATTTCACTAGAGGAT+TGG | - | chr6.4:54382544-54382563 | MS.gene81859:CDS | 40.0% |
| !! | GAATATGGATTAGGAAAGGC+AGG | - | chr6.4:54382879-54382898 | MS.gene81859:CDS | 40.0% |
| !! | GAGTTCTGCTATTTCACTAG+AGG | - | chr6.4:54382539-54382558 | MS.gene81859:CDS | 40.0% |
| !! | GCTGAACAGATTGCTTTTGA+AGG | - | chr6.4:54382213-54382232 | MS.gene81859:CDS | 40.0% |
| !! | TTAGAGCCTCTAGTTCTTCA+AGG | + | chr6.4:54380463-54380482 | None:intergenic | 40.0% |
| AAGGAAATCGAGTTAGGCAG+TGG | - | chr6.4:54381155-54381174 | MS.gene81859:CDS | 45.0% | |
| AGGAAATCGAGTTAGGCAGT+GGG | - | chr6.4:54381156-54381175 | MS.gene81859:CDS | 45.0% | |
| AGGCATGCTAAACGATGTCT+TGG | + | chr6.4:54381350-54381369 | None:intergenic | 45.0% | |
| ATCGGCAAGGAAATCGAGTT+AGG | - | chr6.4:54381149-54381168 | MS.gene81859:CDS | 45.0% | |
| ATGCCATCAAGGGTTTCTCA+AGG | - | chr6.4:54380935-54380954 | MS.gene81859:CDS | 45.0% | |
| CCTGATCTTGGAAAAGGCTT+AGG | - | chr6.4:54381952-54381971 | MS.gene81859:CDS | 45.0% | |
| CGAAGATATGAAGCAGTTGG+AGG | - | chr6.4:54382666-54382685 | MS.gene81859:CDS | 45.0% | |
| CTATCAACAACCTCGAACTC+TGG | + | chr6.4:54381550-54381569 | None:intergenic | 45.0% | |
| CTTGGGAGAGTGAGAAACAA+AGG | - | chr6.4:54382832-54382851 | MS.gene81859:CDS | 45.0% | |
| GACTCCTTCACAGAGAAGAT+TGG | - | chr6.4:54381402-54381421 | MS.gene81859:CDS | 45.0% | |
| GCAATGGAAGGAAGAATGCT+TGG | - | chr6.4:54382814-54382833 | MS.gene81859:CDS | 45.0% | |
| GTGGTTCAAACAAGAGATGG+AGG | - | chr6.4:54381979-54381998 | MS.gene81859:CDS | 45.0% | |
| TCAGCTCCTTGAAGAACTAG+AGG | - | chr6.4:54380454-54380473 | MS.gene81859:CDS | 45.0% | |
| TCCTTCACAGAGAAGATTGG+CGG | - | chr6.4:54381405-54381424 | MS.gene81859:CDS | 45.0% | |
| TCTTGATCTTCCAGAGTTCG+AGG | - | chr6.4:54381537-54381556 | MS.gene81859:CDS | 45.0% | |
| TTAGGAAAGGCAGGGAAGAA+AGG | - | chr6.4:54382888-54382907 | MS.gene81859:CDS | 45.0% | |
| TTGCAAGGGAAAGCTAAAGG+AGG | - | chr6.4:54381193-54381212 | MS.gene81859:CDS | 45.0% | |
| ! | CATGCATGTGGGAGGTTTTA+AGG | - | chr6.4:54382782-54382801 | MS.gene81859:CDS | 45.0% |
| ! | CCTAAGCCTTTTCCAAGATC+AGG | + | chr6.4:54381955-54381974 | None:intergenic | 45.0% |
| ! | GAGTTCGAGGTTGTTGATAG+AGG | - | chr6.4:54381550-54381569 | MS.gene81859:CDS | 45.0% |
| ! | TGGAAAAGGCTTAGGTTGTG+TGG | - | chr6.4:54381960-54381979 | MS.gene81859:CDS | 45.0% |
| ! | TTTAAGGTGAGGAGTGGCAA+TGG | - | chr6.4:54382798-54382817 | MS.gene81859:CDS | 45.0% |
| !!! | ATGTGGGAGGTTTTAAGGTG+AGG | - | chr6.4:54382787-54382806 | MS.gene81859:CDS | 45.0% |
| AGCAGTTGGAGGACCTATGA+TGG | - | chr6.4:54382677-54382696 | MS.gene81859:CDS | 50.0% | |
| GAAAGCTAAAGGAGGAGAGC+TGG | - | chr6.4:54381201-54381220 | MS.gene81859:CDS | 50.0% | |
| GCACCTTGAGAAACCCTTGA+TGG | + | chr6.4:54380941-54380960 | None:intergenic | 50.0% | |
| GTAAGTAGCATGCATGTGGG+AGG | - | chr6.4:54382774-54382793 | MS.gene81859:CDS | 50.0% | |
| GTCGCATGTCCTTATCTCCA+TGG | - | chr6.4:54380636-54380655 | MS.gene81859:CDS | 50.0% | |
| TCCGCCAATCTTCTCTGTGA+AGG | + | chr6.4:54381409-54381428 | None:intergenic | 50.0% | |
| ! | CTCAGTGGATTTGAGCCAGT+TGG | - | chr6.4:54381105-54381124 | MS.gene81859:CDS | 50.0% |
| !!! | GGAGGTTTTAAGGTGAGGAG+TGG | - | chr6.4:54382792-54382811 | MS.gene81859:CDS | 50.0% |
| AGGTGAGGAGTGGCAATGGA+AGG | - | chr6.4:54382802-54382821 | MS.gene81859:CDS | 55.0% | |
| GGAGAGCTGGTTGTGAAGCT+AGG | - | chr6.4:54381214-54381233 | MS.gene81859:CDS | 55.0% | |
| GTCGAGCGAACGAAGATGTG+AGG | + | chr6.4:54381321-54381340 | None:intergenic | 55.0% | |
| ! | AAGCGCTGCGCGGATAGTTT+CGG | - | chr6.4:54382284-54382303 | MS.gene81859:CDS | 55.0% |
| ! | GAGCAAGTTCAAGCGCTGCG+CGG | - | chr6.4:54382274-54382293 | MS.gene81859:CDS | 60.0% |
| AAGGACATGCGACGCGACCG+AGG | + | chr6.4:54380629-54380648 | None:intergenic | 65.0% | |
| TGCGACGCGACCGAGGTTTG+TGG | + | chr6.4:54380622-54380641 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 54380416 | 54383019 | 54380416 | ID=MS.gene81859 |
| chr6.4 | mRNA | 54380416 | 54383019 | 54380416 | ID=MS.gene81859.t1;Parent=MS.gene81859 |
| chr6.4 | exon | 54380416 | 54383019 | 54380416 | ID=MS.gene81859.t1.exon1;Parent=MS.gene81859.t1 |
| chr6.4 | CDS | 54380416 | 54383019 | 54380416 | ID=cds.MS.gene81859.t1;Parent=MS.gene81859.t1 |
| Gene Sequence |
| Protein sequence |
