Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42747.t1 | XP_013445321.1 | 94 | 268 | 10 | 2 | 1 | 262 | 1 | 268 | 2.80E-139 | 504.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42747.t1 | Q32KT5 | 28.0 | 161 | 102 | 5 | 75 | 221 | 147 | 307 | 3.1e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42747.t1 | A0A072TPP7 | 94.0 | 268 | 10 | 2 | 1 | 262 | 1 | 268 | 2.0e-139 | 504.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene42747 | 0.80955 | 1.79E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene42747 | 0.869734 | 2.48E-66 | -1.69E-46 |
| MS.gene049369 | MS.gene42747 | 0.837828 | 4.13E-57 | -1.69E-46 |
| MS.gene049396 | MS.gene42747 | 0.835429 | 1.69E-56 | -1.69E-46 |
| MS.gene049480 | MS.gene42747 | 0.801048 | 1.08E-48 | -1.69E-46 |
| MS.gene049488 | MS.gene42747 | 0.806719 | 7.17E-50 | -1.69E-46 |
| MS.gene050060 | MS.gene42747 | 0.822347 | 2.49E-53 | -1.69E-46 |
| MS.gene050400 | MS.gene42747 | 0.810319 | 1.22E-50 | -1.69E-46 |
| MS.gene050426 | MS.gene42747 | -0.844255 | 8.47E-59 | -1.69E-46 |
| MS.gene050670 | MS.gene42747 | 0.867951 | 9.37E-66 | -1.69E-46 |
| MS.gene050971 | MS.gene42747 | 0.863228 | 2.89E-64 | -1.69E-46 |
| MS.gene05105 | MS.gene42747 | 0.824139 | 9.49E-54 | -1.69E-46 |
| MS.gene051360 | MS.gene42747 | 0.821135 | 4.74E-53 | -1.69E-46 |
| MS.gene051521 | MS.gene42747 | 0.829622 | 4.64E-55 | -1.69E-46 |
| MS.gene051525 | MS.gene42747 | 0.842581 | 2.37E-58 | -1.69E-46 |
| MS.gene051838 | MS.gene42747 | 0.805083 | 1.58E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene42747 | -0.812544 | 4.02E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene42747 | 0.837861 | 4.05E-57 | -1.69E-46 |
| MS.gene052134 | MS.gene42747 | 0.8061 | 9.69E-50 | -1.69E-46 |
| MS.gene052135 | MS.gene42747 | 0.818535 | 1.86E-52 | -1.69E-46 |
| MS.gene052136 | MS.gene42747 | 0.821684 | 3.54E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene42747 | 0.855816 | 4.89E-62 | -1.69E-46 |
| MS.gene052253 | MS.gene42747 | 0.832538 | 8.93E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene42747 | 0.841602 | 4.30E-58 | -1.69E-46 |
| MS.gene052346 | MS.gene42747 | 0.820186 | 7.83E-53 | -1.69E-46 |
| MS.gene052414 | MS.gene42747 | 0.85926 | 4.68E-63 | -1.69E-46 |
| MS.gene052421 | MS.gene42747 | 0.811596 | 6.47E-51 | -1.69E-46 |
| MS.gene052469 | MS.gene42747 | 0.807076 | 6.03E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene42747 | 0.813105 | 3.03E-51 | -1.69E-46 |
| MS.gene053169 | MS.gene42747 | 0.859799 | 3.22E-63 | -1.69E-46 |
| MS.gene05316 | MS.gene42747 | 0.844785 | 6.10E-59 | -1.69E-46 |
| MS.gene053449 | MS.gene42747 | 0.868244 | 7.54E-66 | -1.69E-46 |
| MS.gene053758 | MS.gene42747 | 0.842472 | 2.53E-58 | -1.69E-46 |
| MS.gene053889 | MS.gene42747 | 0.810638 | 1.04E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene42747 | 0.842017 | 3.34E-58 | -1.69E-46 |
| MS.gene054183 | MS.gene42747 | 0.80616 | 9.41E-50 | -1.69E-46 |
| MS.gene054349 | MS.gene42747 | 0.842143 | 3.10E-58 | -1.69E-46 |
| MS.gene054556 | MS.gene42747 | 0.86865 | 5.58E-66 | -1.69E-46 |
| MS.gene05494 | MS.gene42747 | 0.818191 | 2.23E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene42747 | 0.802876 | 4.56E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene42747 | 0.815999 | 6.93E-52 | -1.69E-46 |
| MS.gene055369 | MS.gene42747 | 0.805805 | 1.12E-49 | -1.69E-46 |
| MS.gene055539 | MS.gene42747 | 0.836686 | 8.09E-57 | -1.69E-46 |
| MS.gene05553 | MS.gene42747 | 0.827787 | 1.29E-54 | -1.69E-46 |
| MS.gene05556 | MS.gene42747 | 0.811345 | 7.34E-51 | -1.69E-46 |
| MS.gene055741 | MS.gene42747 | 0.861488 | 9.91E-64 | -1.69E-46 |
| MS.gene055744 | MS.gene42747 | 0.871026 | 9.35E-67 | -1.69E-46 |
| MS.gene055909 | MS.gene42747 | 0.846903 | 1.62E-59 | -1.69E-46 |
| MS.gene055911 | MS.gene42747 | 0.850472 | 1.66E-60 | -1.69E-46 |
| MS.gene056233 | MS.gene42747 | 0.815024 | 1.14E-51 | -1.69E-46 |
| MS.gene056422 | MS.gene42747 | 0.814654 | 1.38E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene42747 | 0.87112 | 8.70E-67 | -1.69E-46 |
| MS.gene056514 | MS.gene42747 | 0.816077 | 6.66E-52 | -1.69E-46 |
| MS.gene056659 | MS.gene42747 | 0.818959 | 1.49E-52 | -1.69E-46 |
| MS.gene056876 | MS.gene42747 | 0.82292 | 1.83E-53 | -1.69E-46 |
| MS.gene057019 | MS.gene42747 | 0.809976 | 1.45E-50 | -1.69E-46 |
| MS.gene057124 | MS.gene42747 | 0.824155 | 9.41E-54 | -1.69E-46 |
| MS.gene057396 | MS.gene42747 | 0.849564 | 2.98E-60 | -1.69E-46 |
| MS.gene057609 | MS.gene42747 | 0.810845 | 9.42E-51 | -1.69E-46 |
| MS.gene057610 | MS.gene42747 | 0.83521 | 1.92E-56 | -1.69E-46 |
| MS.gene057668 | MS.gene42747 | 0.813551 | 2.42E-51 | -1.69E-46 |
| MS.gene057734 | MS.gene42747 | 0.816971 | 4.20E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene42747 | 0.817575 | 3.07E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene42747 | 0.827693 | 1.36E-54 | -1.69E-46 |
| MS.gene058007 | MS.gene42747 | 0.867806 | 1.04E-65 | -1.69E-46 |
| MS.gene058075 | MS.gene42747 | 0.822662 | 2.10E-53 | -1.69E-46 |
| MS.gene058120 | MS.gene42747 | 0.821048 | 4.97E-53 | -1.69E-46 |
| MS.gene058376 | MS.gene42747 | 0.843761 | 1.15E-58 | -1.69E-46 |
| MS.gene058444 | MS.gene42747 | 0.82844 | 8.98E-55 | -1.69E-46 |
| MS.gene058700 | MS.gene42747 | 0.852755 | 3.75E-61 | -1.69E-46 |
| MS.gene058928 | MS.gene42747 | 0.847424 | 1.17E-59 | -1.69E-46 |
| MS.gene058948 | MS.gene42747 | 0.825903 | 3.64E-54 | -1.69E-46 |
| MS.gene059082 | MS.gene42747 | 0.82205 | 2.91E-53 | -1.69E-46 |
| MS.gene059285 | MS.gene42747 | 0.808248 | 3.40E-50 | -1.69E-46 |
| MS.gene059366 | MS.gene42747 | 0.832912 | 7.21E-56 | -1.69E-46 |
| MS.gene059420 | MS.gene42747 | 0.847552 | 1.08E-59 | -1.69E-46 |
| MS.gene059455 | MS.gene42747 | 0.807484 | 4.94E-50 | -1.69E-46 |
| MS.gene059462 | MS.gene42747 | 0.818046 | 2.41E-52 | -1.69E-46 |
| MS.gene059674 | MS.gene42747 | 0.866516 | 2.69E-65 | -1.69E-46 |
| MS.gene059688 | MS.gene42747 | 0.82798 | 1.16E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene42747 | 0.806185 | 9.30E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene42747 | 0.811918 | 5.51E-51 | -1.69E-46 |
| MS.gene059711 | MS.gene42747 | 0.809889 | 1.51E-50 | -1.69E-46 |
| MS.gene059717 | MS.gene42747 | 0.815012 | 1.15E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene42747 | 0.906666 | 1.16E-80 | -1.69E-46 |
| MS.gene059876 | MS.gene42747 | 0.811694 | 6.16E-51 | -1.69E-46 |
| MS.gene060247 | MS.gene42747 | 0.803555 | 3.30E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene42747 | 0.841585 | 4.35E-58 | -1.69E-46 |
| MS.gene060403 | MS.gene42747 | 0.834004 | 3.85E-56 | -1.69E-46 |
| MS.gene060837 | MS.gene42747 | 0.844246 | 8.51E-59 | -1.69E-46 |
| MS.gene060986 | MS.gene42747 | 0.824523 | 7.71E-54 | -1.69E-46 |
| MS.gene061154 | MS.gene42747 | 0.859455 | 4.09E-63 | -1.69E-46 |
| MS.gene061159 | MS.gene42747 | 0.814814 | 1.27E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene069717 | MS.gene42747 | PPI |
| MS.gene42746 | MS.gene42747 | PPI |
| MS.gene068946 | MS.gene42747 | PPI |
| MS.gene62495 | MS.gene42747 | PPI |
| MS.gene36105 | MS.gene42747 | PPI |
| MS.gene42747 | MS.gene62495 | PPI |
| MS.gene42747 | MS.gene066192 | PPI |
| MS.gene038976 | MS.gene42747 | PPI |
| MS.gene42747 | MS.gene068946 | PPI |
| MS.gene045724 | MS.gene42747 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42747.t1 | MTR_8g046460 | 93.284 | 268 | 12 | 2 | 1 | 262 | 1 | 268 | 5.61e-178 | 490 |
| MS.gene42747.t1 | MTR_2g064370 | 70.522 | 268 | 72 | 4 | 1 | 262 | 1 | 267 | 3.79e-131 | 372 |
| MS.gene42747.t1 | MTR_8g028425 | 57.143 | 154 | 63 | 2 | 72 | 223 | 92 | 244 | 5.45e-65 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42747.t1 | AT1G16320 | 69.231 | 221 | 67 | 1 | 43 | 262 | 53 | 273 | 4.49e-117 | 336 |
| MS.gene42747.t1 | AT1G79510 | 60.714 | 280 | 87 | 5 | 1 | 262 | 1 | 275 | 1.99e-116 | 335 |
| MS.gene42747.t1 | AT1G79510 | 60.714 | 280 | 87 | 5 | 1 | 262 | 1 | 275 | 1.99e-116 | 335 |
| MS.gene42747.t1 | AT2G46220 | 57.325 | 157 | 64 | 2 | 69 | 223 | 81 | 236 | 2.50e-66 | 206 |
Find 57 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAACCGGTTTCGGTTT+TGG | 0.220818 | 8.4:-54349936 | MS.gene42747:CDS |
| GACCCTTTGAACACATTTAC+TGG | 0.240823 | 8.4:-54350220 | MS.gene42747:CDS |
| AGAAGTACAAGTTGATCTTT+TGG | 0.270946 | 8.4:-54350192 | MS.gene42747:CDS |
| AGGTACTTCGCGGTATAAAT+TGG | 0.272271 | 8.4:-54350023 | MS.gene42747:CDS |
| ACCTTAATTATGATATTTAT+AGG | 0.278702 | 8.4:-54350686 | MS.gene42747:intron |
| ACCTATAAATATCATAATTA+AGG | 0.297853 | 8.4:+54350685 | None:intergenic |
| CCCCATGAAAATGTTGGATT+TGG | 0.313331 | 8.4:+54349887 | None:intergenic |
| TGGATTCTAGTTCATGTTCA+TGG | 0.337564 | 8.4:-54349859 | MS.gene42747:CDS |
| GAATAAAGAGTATTGAGAAA+TGG | 0.346750 | 8.4:+54350878 | None:intergenic |
| AATAAAGAGTATTGAGAAAT+GGG | 0.349742 | 8.4:+54350879 | None:intergenic |
| GTTTGGATGTATACAGAATA+TGG | 0.351747 | 8.4:-54350129 | MS.gene42747:CDS |
| TTGGTGTTTGAATCTTGATT+TGG | 0.370847 | 8.4:+54350920 | None:intergenic |
| TGTTTATCTTGAGTAGCTAA+TGG | 0.394872 | 8.4:+54350798 | None:intergenic |
| GAAGATGATGAAACCGGTTT+CGG | 0.396965 | 8.4:-54349942 | MS.gene42747:CDS |
| GTTGTTACCACCAGATGGTT+TGG | 0.415329 | 8.4:-54349789 | MS.gene42747:CDS |
| GGAACTTGAGGGGTGTGCCT+AGG | 0.417152 | 8.4:-54350075 | MS.gene42747:CDS |
| TTTGTTTCGTGAGATTGGTT+TGG | 0.421815 | 8.4:-54350146 | MS.gene42747:CDS |
| GAACTTGAGGGGTGTGCCTA+GGG | 0.426698 | 8.4:-54350074 | MS.gene42747:CDS |
| ACCAAATCCAAAACCGAAAC+CGG | 0.442141 | 8.4:+54349929 | None:intergenic |
| CAACCTGTGCAGTGAAACTT+TGG | 0.444081 | 8.4:+54350835 | None:intergenic |
| AATGTTGGATTTGGACTAGC+AGG | 0.451399 | 8.4:+54349896 | None:intergenic |
| TTTCACTGCACAGGTTGCTC+AGG | 0.452221 | 8.4:-54350829 | MS.gene42747:CDS |
| GGGGTGTGCCTAGGGTTCCA+TGG | 0.454206 | 8.4:-54350066 | MS.gene42747:CDS |
| GGGTGTGCCTAGGGTTCCAT+GGG | 0.462556 | 8.4:-54350065 | MS.gene42747:CDS |
| TTGAATCTTGATTTGGATTG+AGG | 0.469278 | 8.4:+54350927 | None:intergenic |
| GAACATGCAGCCAAACCATC+TGG | 0.478212 | 8.4:+54349779 | None:intergenic |
| CAGAGAATGTGATATTGATC+AGG | 0.478427 | 8.4:-54350099 | MS.gene42747:CDS |
| TACCAGTAAATGTGTTCAAA+GGG | 0.481927 | 8.4:+54350218 | None:intergenic |
| AGTCCAAAGTTTCACTGCAC+AGG | 0.485891 | 8.4:-54350838 | MS.gene42747:CDS |
| TCCACAGAAGATGATGAAAC+CGG | 0.487224 | 8.4:-54349948 | MS.gene42747:CDS |
| ATACCAGTAAATGTGTTCAA+AGG | 0.496720 | 8.4:+54350217 | None:intergenic |
| TAAACAGAATCAGCATCAAA+AGG | 0.500362 | 8.4:-54350781 | MS.gene42747:CDS |
| GAAGCTAAAGGTGAATTTCA+AGG | 0.517611 | 8.4:-54350043 | MS.gene42747:CDS |
| GTGAATTTCAAGGTACTTCG+CGG | 0.529074 | 8.4:-54350033 | MS.gene42747:CDS |
| ATCAATATCACATTCTCTGA+AGG | 0.533171 | 8.4:+54350103 | None:intergenic |
| AATTCACCTTTAGCTTCCCA+TGG | 0.534577 | 8.4:+54350049 | None:intergenic |
| TTAGCTTCCCATGGAACCCT+AGG | 0.536034 | 8.4:+54350058 | None:intergenic |
| TATTGATCAGGTGGAACTTG+AGG | 0.540071 | 8.4:-54350087 | MS.gene42747:CDS |
| AAAGGACCCCATGAAAATGT+TGG | 0.541364 | 8.4:+54349881 | None:intergenic |
| ATTGATCAGGTGGAACTTGA+GGG | 0.551874 | 8.4:-54350086 | MS.gene42747:CDS |
| ACCGGTTTCATCATCTTCTG+TGG | 0.561359 | 8.4:+54349947 | None:intergenic |
| AGGGTTCCATGGGAAGCTAA+AGG | 0.578430 | 8.4:-54350055 | MS.gene42747:CDS |
| GAAAGATTGAGATTGCAAAG+AGG | 0.578460 | 8.4:+54350957 | None:intergenic |
| AGGTCTTTAACAAAGATCAA+AGG | 0.587544 | 8.4:+54350705 | None:intergenic |
| AGACAGTTGTTACCACCAGA+TGG | 0.589181 | 8.4:-54349794 | MS.gene42747:CDS |
| GCAGTGAAACTTTGGACTGA+AGG | 0.593412 | 8.4:+54350843 | None:intergenic |
| AGAATGTGATATTGATCAGG+TGG | 0.610163 | 8.4:-54350096 | MS.gene42747:CDS |
| TCAAGCAGTTAAGCACACAT+TGG | 0.624208 | 8.4:-54349825 | MS.gene42747:CDS |
| CTTCGCGGTATAAATTGGAT+CGG | 0.643822 | 8.4:-54350018 | MS.gene42747:CDS |
| GAACATGAACTAGAATCCAA+AGG | 0.647700 | 8.4:+54349863 | None:intergenic |
| TGCTGTTAGAACCCTTCGTG+AGG | 0.651000 | 8.4:-54350733 | MS.gene42747:CDS |
| CGGTATAAATTGGATCGGAA+CGG | 0.651485 | 8.4:-54350013 | MS.gene42747:CDS |
| TTGATCAGGTGGAACTTGAG+GGG | 0.654298 | 8.4:-54350085 | MS.gene42747:CDS |
| CAAAGGCATATCCTCACGAA+GGG | 0.657035 | 8.4:+54350722 | None:intergenic |
| ATGTTGGATTTGGACTAGCA+GGG | 0.662829 | 8.4:+54349897 | None:intergenic |
| TCAAAGGCATATCCTCACGA+AGG | 0.664210 | 8.4:+54350721 | None:intergenic |
| CATGCAGCCAAACCATCTGG+TGG | 0.695452 | 8.4:+54349782 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCTATAAATATCATAATTA+AGG | + | chr8.4:54350059-54350078 | None:intergenic | 15.0% |
| !! | ACCTTAATTATGATATTTAT+AGG | - | chr8.4:54350055-54350074 | MS.gene42747:CDS | 15.0% |
| !! | GATGATGTAATTAATATTTA+TGG | - | chr8.4:54350204-54350223 | MS.gene42747:CDS | 15.0% |
| !!! | AAAAATTGGATTTTTAATGT+TGG | - | chr8.4:54350165-54350184 | MS.gene42747:CDS | 15.0% |
| !!! | AAAATTGGATTTTTAATGTT+GGG | - | chr8.4:54350166-54350185 | MS.gene42747:CDS | 15.0% |
| !!! | ATAGTTAGAATTTTAATGTT+GGG | - | chr8.4:54350462-54350481 | MS.gene42747:intron | 15.0% |
| !!! | TAAAAAAAGTTAATTTTGAG+TGG | - | chr8.4:54350407-54350426 | MS.gene42747:intron | 15.0% |
| !!! | TATAGTTAGAATTTTAATGT+TGG | - | chr8.4:54350461-54350480 | MS.gene42747:intron | 15.0% |
| !!! | TTGCTTTTCATATAAATATA+TGG | - | chr8.4:54350108-54350127 | MS.gene42747:CDS | 15.0% |
| !!! | AATAAAGAGTATTGAGAAAT+GGG | + | chr8.4:54349865-54349884 | None:intergenic | 20.0% |
| !!! | AATTTTGAGTGGAAAAAAAT+TGG | - | chr8.4:54350418-54350437 | MS.gene42747:intron | 20.0% |
| !!! | ATTTCTAGGTGAAAAAAAAT+TGG | - | chr8.4:54350151-54350170 | MS.gene42747:CDS | 20.0% |
| !!! | ATTTGAATTGTGTTATTTCT+AGG | - | chr8.4:54350137-54350156 | MS.gene42747:CDS | 20.0% |
| !!! | ATTTTGAGTGGAAAAAAATT+GGG | - | chr8.4:54350419-54350438 | MS.gene42747:intron | 20.0% |
| !!! | CTTTTTTTATACATAGAAAG+TGG | + | chr8.4:54350396-54350415 | None:intergenic | 20.0% |
| ! | ATTAATATTTATGGACCCTT+TGG | - | chr8.4:54350213-54350232 | MS.gene42747:CDS | 25.0% |
| ! | TTAATTCTGAGTAATCTGTA+AGG | - | chr8.4:54350269-54350288 | MS.gene42747:intron | 25.0% |
| !! | TATAGGTAATTTTCTCATCT+GGG | - | chr8.4:54350072-54350091 | MS.gene42747:CDS | 25.0% |
| !! | TTATAGGTAATTTTCTCATC+TGG | - | chr8.4:54350071-54350090 | MS.gene42747:CDS | 25.0% |
| !!! | GAATAAAGAGTATTGAGAAA+TGG | + | chr8.4:54349866-54349885 | None:intergenic | 25.0% |
| !!! | TGGGTTTGATAATTTTTTCA+GGG | - | chr8.4:54350481-54350500 | MS.gene42747:intron | 25.0% |
| !!! | TTGGGTTTGATAATTTTTTC+AGG | - | chr8.4:54350480-54350499 | MS.gene42747:intron | 25.0% |
| AAATGTCGATATAGTTAGGT+CGG | - | chr8.4:54350307-54350326 | MS.gene42747:intron | 30.0% | |
| AGGTCTTTAACAAAGATCAA+AGG | + | chr8.4:54350039-54350058 | None:intergenic | 30.0% | |
| ATACCAGTAAATGTGTTCAA+AGG | + | chr8.4:54350527-54350546 | None:intergenic | 30.0% | |
| ATCAATATCACATTCTCTGA+AGG | + | chr8.4:54350641-54350660 | None:intergenic | 30.0% | |
| GTTTGGATGTATACAGAATA+TGG | - | chr8.4:54350612-54350631 | MS.gene42747:intron | 30.0% | |
| TAAACAGAATCAGCATCAAA+AGG | - | chr8.4:54349960-54349979 | MS.gene42747:CDS | 30.0% | |
| TACCAGTAAATGTGTTCAAA+GGG | + | chr8.4:54350526-54350545 | None:intergenic | 30.0% | |
| TGGTAAATGTCGATATAGTT+AGG | - | chr8.4:54350303-54350322 | MS.gene42747:intron | 30.0% | |
| TGTTTATCTTGAGTAGCTAA+TGG | + | chr8.4:54349946-54349965 | None:intergenic | 30.0% | |
| ! | TCCAAATCCAACATTTTCAT+GGG | - | chr8.4:54350853-54350872 | MS.gene42747:CDS | 30.0% |
| ! | TGGATTTTTAATGTTGGGTT+TGG | - | chr8.4:54350171-54350190 | MS.gene42747:CDS | 30.0% |
| ! | TTGGTGTTTGAATCTTGATT+TGG | + | chr8.4:54349824-54349843 | None:intergenic | 30.0% |
| !! | AGAATTTTGTTTCGTGAGAT+TGG | - | chr8.4:54350590-54350609 | MS.gene42747:intron | 30.0% |
| !! | GATGAGTTTTATCTCAATCT+TGG | - | chr8.4:54349982-54350001 | MS.gene42747:CDS | 30.0% |
| !! | TGTTGGGTTTGGTAATTTTA+AGG | - | chr8.4:54350182-54350201 | MS.gene42747:CDS | 30.0% |
| !! | TTGAATCTTGATTTGGATTG+AGG | + | chr8.4:54349817-54349836 | None:intergenic | 30.0% |
| !!! | AGAAGTACAAGTTGATCTTT+TGG | - | chr8.4:54350549-54350568 | MS.gene42747:intron | 30.0% |
| !!! | GAAGTACAAGTTGATCTTTT+GGG | - | chr8.4:54350550-54350569 | MS.gene42747:intron | 30.0% |
| ACCAATATATGCACATCCAA+AGG | + | chr8.4:54350232-54350251 | None:intergenic | 35.0% | |
| AGAATGTGATATTGATCAGG+TGG | - | chr8.4:54350645-54350664 | MS.gene42747:intron | 35.0% | |
| CAGAGAATGTGATATTGATC+AGG | - | chr8.4:54350642-54350661 | MS.gene42747:intron | 35.0% | |
| CCAATATATGCACATCCAAA+GGG | + | chr8.4:54350231-54350250 | None:intergenic | 35.0% | |
| GAAAGATTGAGATTGCAAAG+AGG | + | chr8.4:54349787-54349806 | None:intergenic | 35.0% | |
| GAACATGAACTAGAATCCAA+AGG | + | chr8.4:54350881-54350900 | None:intergenic | 35.0% | |
| GAAGCTAAAGGTGAATTTCA+AGG | - | chr8.4:54350698-54350717 | MS.gene42747:CDS | 35.0% | |
| ! | CAGGGATGATGTAACATTTT+TGG | - | chr8.4:54350499-54350518 | MS.gene42747:intron | 35.0% |
| ! | CCAAATCCAACATTTTCATG+GGG | - | chr8.4:54350854-54350873 | MS.gene42747:CDS | 35.0% |
| ! | GTCCAAATCCAACATTTTCA+TGG | - | chr8.4:54350852-54350871 | MS.gene42747:CDS | 35.0% |
| ! | TTTGTTTCGTGAGATTGGTT+TGG | - | chr8.4:54350595-54350614 | MS.gene42747:intron | 35.0% |
| !! | TGGATTCTAGTTCATGTTCA+TGG | - | chr8.4:54350882-54350901 | MS.gene42747:CDS | 35.0% |
| !!! | GTTTTGAAGAAGACAGTGTT+TGG | + | chr8.4:54349843-54349862 | None:intergenic | 35.0% |
| AAAGGACCCCATGAAAATGT+TGG | + | chr8.4:54350863-54350882 | None:intergenic | 40.0% | |
| ACCAAATCCAAAACCGAAAC+CGG | + | chr8.4:54350815-54350834 | None:intergenic | 40.0% | |
| AGGTACTTCGCGGTATAAAT+TGG | - | chr8.4:54350718-54350737 | MS.gene42747:CDS | 40.0% | |
| ATTGATCAGGTGGAACTTGA+GGG | - | chr8.4:54350655-54350674 | MS.gene42747:intron | 40.0% | |
| CCCCATGAAAATGTTGGATT+TGG | + | chr8.4:54350857-54350876 | None:intergenic | 40.0% | |
| CCCTTTGGATGTGCATATAT+TGG | - | chr8.4:54350228-54350247 | MS.gene42747:CDS | 40.0% | |
| CGGTATAAATTGGATCGGAA+CGG | - | chr8.4:54350728-54350747 | MS.gene42747:CDS | 40.0% | |
| CTTCGCGGTATAAATTGGAT+CGG | - | chr8.4:54350723-54350742 | MS.gene42747:CDS | 40.0% | |
| GACCCTTTGAACACATTTAC+TGG | - | chr8.4:54350521-54350540 | MS.gene42747:intron | 40.0% | |
| TATTGATCAGGTGGAACTTG+AGG | - | chr8.4:54350654-54350673 | MS.gene42747:intron | 40.0% | |
| TCAAGCAGTTAAGCACACAT+TGG | - | chr8.4:54350916-54350935 | MS.gene42747:CDS | 40.0% | |
| TCCACAGAAGATGATGAAAC+CGG | - | chr8.4:54350793-54350812 | MS.gene42747:CDS | 40.0% | |
| ! | AACATTTTCATGGGGTCCTT+TGG | - | chr8.4:54350862-54350881 | MS.gene42747:CDS | 40.0% |
| ! | AATTCACCTTTAGCTTCCCA+TGG | + | chr8.4:54350695-54350714 | None:intergenic | 40.0% |
| ! | GAAGATGATGAAACCGGTTT+CGG | - | chr8.4:54350799-54350818 | MS.gene42747:CDS | 40.0% |
| ! | GTGAATTTCAAGGTACTTCG+CGG | - | chr8.4:54350708-54350727 | MS.gene42747:CDS | 40.0% |
| !! | AATGTTGGATTTGGACTAGC+AGG | + | chr8.4:54350848-54350867 | None:intergenic | 40.0% |
| !! | AGTTGATCTTTTGGGCATTG+AGG | - | chr8.4:54350558-54350577 | MS.gene42747:intron | 40.0% |
| !! | ATGTTGGATTTGGACTAGCA+GGG | + | chr8.4:54350847-54350866 | None:intergenic | 40.0% |
| !!! | TTTTGGGCATTGAGGTTTCA+TGG | - | chr8.4:54350566-54350585 | MS.gene42747:intron | 40.0% |
| AGACAGTTGTTACCACCAGA+TGG | - | chr8.4:54350947-54350966 | MS.gene42747:CDS | 45.0% | |
| AGTCCAAAGTTTCACTGCAC+AGG | - | chr8.4:54349903-54349922 | MS.gene42747:CDS | 45.0% | |
| CAACCTGTGCAGTGAAACTT+TGG | + | chr8.4:54349909-54349928 | None:intergenic | 45.0% | |
| CGACATTTACCAGTTGAGCT+AGG | + | chr8.4:54350295-54350314 | None:intergenic | 45.0% | |
| GCAGTGAAACTTTGGACTGA+AGG | + | chr8.4:54349901-54349920 | None:intergenic | 45.0% | |
| GTTGTTACCACCAGATGGTT+TGG | - | chr8.4:54350952-54350971 | MS.gene42747:CDS | 45.0% | |
| TTGATCAGGTGGAACTTGAG+GGG | - | chr8.4:54350656-54350675 | MS.gene42747:intron | 45.0% | |
| ! | ACCGGTTTCATCATCTTCTG+TGG | + | chr8.4:54350797-54350816 | None:intergenic | 45.0% |
| ! | CAAAGGCATATCCTCACGAA+GGG | + | chr8.4:54350022-54350041 | None:intergenic | 45.0% |
| ! | TCAAAGGCATATCCTCACGA+AGG | + | chr8.4:54350023-54350042 | None:intergenic | 45.0% |
| !! | GATGAAACCGGTTTCGGTTT+TGG | - | chr8.4:54350805-54350824 | MS.gene42747:CDS | 45.0% |
| !!! | ACCGGTTTCGGTTTTGGATT+TGG | - | chr8.4:54350811-54350830 | MS.gene42747:CDS | 45.0% |
| AGGGTTCCATGGGAAGCTAA+AGG | - | chr8.4:54350686-54350705 | MS.gene42747:intron | 50.0% | |
| AGTCGTTCGAACCCAGGTTA+AGG | + | chr8.4:54350336-54350355 | None:intergenic | 50.0% | |
| GAACATGCAGCCAAACCATC+TGG | + | chr8.4:54350965-54350984 | None:intergenic | 50.0% | |
| TAGGTCGGACACCTTAACCT+GGG | - | chr8.4:54350322-54350341 | MS.gene42747:intron | 50.0% | |
| TCTGTAAGGCCTAGCTCAAC+TGG | - | chr8.4:54350283-54350302 | MS.gene42747:intron | 50.0% | |
| TGCTGTTAGAACCCTTCGTG+AGG | - | chr8.4:54350008-54350027 | MS.gene42747:CDS | 50.0% | |
| TTAGCTTCCCATGGAACCCT+AGG | + | chr8.4:54350686-54350705 | None:intergenic | 50.0% | |
| TTAGGTCGGACACCTTAACC+TGG | - | chr8.4:54350321-54350340 | MS.gene42747:intron | 50.0% | |
| TTTCACTGCACAGGTTGCTC+AGG | - | chr8.4:54349912-54349931 | MS.gene42747:CDS | 50.0% | |
| CATGCAGCCAAACCATCTGG+TGG | + | chr8.4:54350962-54350981 | None:intergenic | 55.0% | |
| TCGAACGACTCGCAGTCAAG+TGG | - | chr8.4:54350346-54350365 | MS.gene42747:intron | 55.0% | |
| ! | GAACTTGAGGGGTGTGCCTA+GGG | - | chr8.4:54350667-54350686 | MS.gene42747:intron | 55.0% |
| ACTGCGAGTCGTTCGAACCC+AGG | + | chr8.4:54350342-54350361 | None:intergenic | 60.0% | |
| GGGTGTGCCTAGGGTTCCAT+GGG | - | chr8.4:54350676-54350695 | MS.gene42747:intron | 60.0% | |
| ! | GGAACTTGAGGGGTGTGCCT+AGG | - | chr8.4:54350666-54350685 | MS.gene42747:intron | 60.0% |
| GGGGTGTGCCTAGGGTTCCA+TGG | - | chr8.4:54350675-54350694 | MS.gene42747:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 54349775 | 54350988 | 54349775 | ID=MS.gene42747 |
| chr8.4 | mRNA | 54349775 | 54350988 | 54349775 | ID=MS.gene42747.t1;Parent=MS.gene42747 |
| chr8.4 | exon | 54350687 | 54350988 | 54350687 | ID=MS.gene42747.t1.exon1;Parent=MS.gene42747.t1 |
| chr8.4 | CDS | 54350687 | 54350988 | 54350687 | ID=cds.MS.gene42747.t1;Parent=MS.gene42747.t1 |
| chr8.4 | exon | 54349775 | 54350261 | 54349775 | ID=MS.gene42747.t1.exon2;Parent=MS.gene42747.t1 |
| chr8.4 | CDS | 54349775 | 54350261 | 54349775 | ID=cds.MS.gene42747.t1;Parent=MS.gene42747.t1 |
| Gene Sequence |
| Protein sequence |
