AlfalfaGEDB | MS.gene26111

M. sativa cultivar XinJiangDaYe / MS.gene26111

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26111.t1	XP_003616290.1	98.1	427	8	0	1	427	1	427	8.10E-205	723

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26111.t1	Q9C8Y4	75.5	245	54	1	174	418	162	400	1.2e-92	341.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26111.t1	G7K1Q0	98.1	427	8	0	1	427	1	427	5.8e-205	723.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049170	MS.gene26111	0.848297	6.70E-60	-1.69E-46
MS.gene049356	MS.gene26111	0.903542	3.12E-79	-1.69E-46
MS.gene049369	MS.gene26111	0.892452	1.57E-74	-1.69E-46
MS.gene049396	MS.gene26111	0.865562	5.40E-65	-1.69E-46
MS.gene049480	MS.gene26111	0.816435	5.54E-52	-1.69E-46
MS.gene049609	MS.gene26111	0.808813	2.57E-50	-1.69E-46
MS.gene049805	MS.gene26111	0.816144	6.43E-52	-1.69E-46
MS.gene050060	MS.gene26111	0.817137	3.85E-52	-1.69E-46
MS.gene050400	MS.gene26111	0.814806	1.28E-51	-1.69E-46
MS.gene050426	MS.gene26111	-0.830258	3.25E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26111.t1	MTR_5g078290	98.361	427	7	0	1	427	1	427	0.0	858
MS.gene26111.t1	MTR_5g078290	98.421	380	6	0	1	380	1	380	0.0	764

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26111.t1	AT1G66330	68.405	326	86	2	104	418	81	400	3.40e-135	394
MS.gene26111.t1	AT1G66330	68.405	326	86	2	104	418	81	400	3.40e-135	394

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Find 92 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGCTGCCGATGAGCAC+TGG	0.524125	5.4:-56781187	MS.gene26111:CDS
AAATAGAAGAAGGGGATAGT+TGG	0.418919	5.4:-56777659	MS.gene26111:CDS
AACCACAAATTCCTTTCTTG+GGG	0.522590	5.4:-56779314	MS.gene26111:CDS
AACTGTATTCTGTTTATCCT+TGG	0.449791	5.4:+56782604	None:intergenic
AAGCAATGGGAAATAGAAGA+AGG	0.516781	5.4:-56777669	MS.gene26111:CDS
AATGGCTGGATTGCTATCCT+CGG	0.650744	5.4:+56777728	None:intergenic
ACAGAATTTCTCAAACTTGA+TGG	0.355828	5.4:-56781584	MS.gene26111:intron
ACATGAGACAGAAGATGTCT+TGG	0.481154	5.4:+56782462	None:intergenic
ACGAGCTTTAGCGAAGGCAC+TGG	0.575429	5.4:-56778248	MS.gene26111:CDS
ACGATGCAAAGTTTCTCTCA+CGG	0.666602	5.4:-56782093	MS.gene26111:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACCAATTTACAAGGTG+AGG	+	chr5.4:56779503-56779522	None:intergenic	30.0%
AAAACCAATTTACAAGGTGA+GGG	+	chr5.4:56779502-56779521	None:intergenic	30.0%
AAATATGAAAAACGCAGACA+AGG	+	chr5.4:56780846-56780865	None:intergenic	30.0%
AACAATTATTTCCACACATG+AGG	+	chr5.4:56778628-56778647	None:intergenic	30.0%
AACAGAACCTGAAAAGAAAA+TGG	+	chr5.4:56781060-56781079	None:intergenic	30.0%
AACTGTATTCTGTTTATCCT+TGG	+	chr5.4:56777701-56777720	None:intergenic	30.0%
AATAGTACAAACTCATATCG+CGG	+	chr5.4:56781522-56781541	None:intergenic	30.0%
ACAGAATTTCTCAAACTTGA+TGG	-	chr5.4:56778718-56778737	MS.gene26111:intron	30.0%
AGCTAGCCATTTCAATTATA+AGG	+	chr5.4:56781975-56781994	None:intergenic	30.0%
AGTATAAAATATCACCTCCA+AGG	+	chr5.4:56780245-56780264	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	56777614	56782710	56777614	ID=MS.gene26111
chr5.4	mRNA	56777614	56782710	56777614	ID=MS.gene26111.t1;Parent=MS.gene26111
chr5.4	exon	56782388	56782710	56782388	ID=MS.gene26111.t1.exon1;Parent=MS.gene26111.t1
chr5.4	CDS	56782388	56782710	56782388	ID=cds.MS.gene26111.t1;Parent=MS.gene26111.t1
chr5.4	exon	56782094	56782192	56782094	ID=MS.gene26111.t1.exon2;Parent=MS.gene26111.t1
chr5.4	CDS	56782094	56782192	56782094	ID=cds.MS.gene26111.t1;Parent=MS.gene26111.t1
chr5.4	exon	56781585	56781658	56781585	ID=MS.gene26111.t1.exon3;Parent=MS.gene26111.t1
chr5.4	CDS	56781585	56781658	56781585	ID=cds.MS.gene26111.t1;Parent=MS.gene26111.t1
chr5.4	exon	56781345	56781421	56781345	ID=MS.gene26111.t1.exon4;Parent=MS.gene26111.t1
chr5.4	CDS	56781345	56781421	56781345	ID=cds.MS.gene26111.t1;Parent=MS.gene26111.t1
chr5.4	exon	56781169	56781240	56781169	ID=MS.gene26111.t1.exon5;Parent=MS.gene26111.t1
chr5.4	CDS	56781169	56781240	56781169	ID=cds.MS.gene26111.t1;Parent=MS.gene26111.t1
chr5.4	exon	56780075	56780143	56780075	ID=MS.gene26111.t1.exon6;Parent=MS.gene26111.t1
chr5.4	CDS	56780075	56780143	56780075	ID=cds.MS.gene26111.t1;Parent=MS.gene26111.t1
chr5.4	exon	56779919	56779965	56779919	ID=MS.gene26111.t1.exon7;Parent=MS.gene26111.t1
chr5.4	CDS	56779919	56779965	56779919	ID=cds.MS.gene26111.t1;Parent=MS.gene26111.t1
chr5.4	exon	56779282	56779411	56779282	ID=MS.gene26111.t1.exon8;Parent=MS.gene26111.t1
chr5.4	CDS	56779282	56779411	56779282	ID=cds.MS.gene26111.t1;Parent=MS.gene26111.t1
chr5.4	exon	56779095	56779163	56779095	ID=MS.gene26111.t1.exon9;Parent=MS.gene26111.t1
chr5.4	CDS	56779095	56779163	56779095	ID=cds.MS.gene26111.t1;Parent=MS.gene26111.t1
chr5.4	exon	56778901	56779004	56778901	ID=MS.gene26111.t1.exon10;Parent=MS.gene26111.t1
chr5.4	CDS	56778901	56779004	56778901	ID=cds.MS.gene26111.t1;Parent=MS.gene26111.t1
chr5.4	exon	56778195	56778270	56778195	ID=MS.gene26111.t1.exon11;Parent=MS.gene26111.t1
chr5.4	CDS	56778195	56778270	56778195	ID=cds.MS.gene26111.t1;Parent=MS.gene26111.t1
chr5.4	exon	56777614	56777757	56777614	ID=MS.gene26111.t1.exon12;Parent=MS.gene26111.t1
chr5.4	CDS	56777614	56777757	56777614	ID=cds.MS.gene26111.t1;Parent=MS.gene26111.t1

Gene Sequence

>MS.gene26111

ATGGCACTTACGGCAAACAAAGTTTCAAGCGGTCCTATCTTGACTAATAGAGCAACACTTTGTAGATCACATGGTTCTTCATCACCAAGGATAAACAGAATACAGTTTTCAAGGGTTAGACTCGAAAATGGACATTTGAACAACGATTCTGTTCTCAATGAGAGATCAACCTTATTCAATGATTGGTTTCGGTTCGTCAATGGAAGAAATCCAGTTAGTTTAATCTCCAAGACATCTTCTGTCTCATGTAAATCAACAGGAGCAAATAATACTGAAGAAAAAGAATGTGTTACAACTTATGATGATGTTTCTGATTTAACTAGGTAAAAAAATAAATATCGACGATAATACATGTGCGATACAAAGTTCATCCATTTTGTTACCATTTTTTTAGTTGCCAATTTTATTATATGTCAAACTAGGATGTATCTTTCTTCTTATCGTTTTGGCGATGACATGTAATATTTGAAAACTGGAAGATACAAATTTACTTATTAGAGACCCTTTCACATGTACAGGAGACATGCCGAAGATGAGAAAAATGATCGTGTTCGTTCTGTTCGTGGCTTGTCTGAAGCTTATAGATTTGCCTGTAACGATGCAAAGTTTCTCTCACGGTACTTCCAGCAACCTGATTCTAATTATATGCTAACAGTATTGTTGCTGGTTGAGTCCACCAAAAAAAATGTTGTCTCTGTTGAAGTTTACTTCCACTACTGTTCATCTGCCATATCTTTTTAGAAATATATTGTTGGAGATATATGAACTGGAAAAGAATTCTTTAATCGGAAAATCCTTTAATAACCACTATACAATCAATTACTCAAAAACTATTTTGAACTGAGCAAGATAATTTAGCAATCATGATTAGAGGAGTTATAATATGGAAAACGACTCGAGCTGACTTAAACATTGGTTCTCAACACATTTTTTAGTAATTTTATGCAATGCCATATTCTAGATAATTAAATGTCTTTGATTTAAGAAATAAAGTAAGAAACAATATTATATCCTCATGTGTGGAAATAATTGTTAACTAATTATTTCTTCAGTGGCATAATGAGGATGGATGAGCGTGCGCGCCAAGATGTTGCCTTTTTAGGGACAGAATTTCTCAAACTTGATGGTTAGCTCATATACCTTGTTTAAATAATGTGATATATTACATTAACATTGCACAACTAAATTCATCCATTGAAATGTAACTATTTTTTTAGTATTAAATTTTTAAATATACACTACATTCCCCTTACATGGTCAACTTACATTTTCTCTACTATGCTGCATAGCTCGGGCAAGAAAGGATACTGAGAAAATCGACCGTGGTGTCAAAGAAAAAGCTAAGCGCCTTAATCGTATTGCTACTGTATGTATCGTCTAGAATTTTCAATTTTTCTGGTTGAAGATGAAAGAATACTATTTATCAATGGTATAATGTTCTTCTTTGTTTATTTTTTATATCCACTGCAGATCTTGAAGGATATCGCTCAGACCAGATTGAAAAGTGCTGCCGATGAGCACTGGAGTGACGGGGCCTTAGAGGTAAATCTGTTAAATCTCTAATCTATCGATTCTAATTTCCGATACTATATTGTTGGTTAGTTTGAAGTGTAATCAGTACTGATATAATTTGCATTATGTGATATTTGTGTAACAATTTGTTGGTTTTTGTGTATTTTATACTGTTTAACTTTTTTAAGAAAAAGCATAAAATGCTACAAACTATCTTAAAATAAGAACTCCTAGGTTTTCTCCTCCATTGCAGATTAATGTGGCAGTGAAAATAGATTTTATACAGGCGTACAATCACACTTCTCTATCTTATGTTGAGAGTCTAATGTTTGAAGTGATATGGCCTGAAAAGGTGTTTATAAGAGGGAGATATCCCTCACCTTGTAAATTGGTTTTTGTAGGTTTGAGTTAGGCTGAACCTATATTCCAAGATGGTATCAAAGCTTATCAAAGATCCGTGAGCCACTCATTTTCGGACCACTCGGGTCACACTGTAGTTGTCTAATACTTGGTGTGTGTTGAGAGTCCCACAGTGAATCATTTGGATGTGATATGGCCTAAAAAATTGATTAAAAGTGAGAGGCATCTCTCACCCTACAAACCTGTTTTGTAGGTTTGAGTTGGACCAAACCCAAGTTCTAATATCGTACCACAATAAAAGCAATTTTTAAGAAATAATATCATGACACGACTATGTTGTGCATTGTTTGTATGTGAAAACCTGTTTACACTGATAATGTCATTTATAAATTTATTTAACAAAAATTAGACTCATTGATGGACACAGATTAAAAGGATAAACAAGGTGTTCTGGTAATGAGCATGGGTTGGTGTTGTCACACATGGGTGTGGCATGACATCTTGTTGGGTTAGAGTTTGTTTTTTCTCACCACACTTAATTACAGAGTTGCTTTCTTGAATTATAGACGTTTCCTTTATATTAATATCCCATACAGATTTCTATAATGAGAGATAAGAAGTGTTTGGTTATTTATAATTCATATGAATGGCCAGAAAATACAAGACTCCTTTTGACATAACTTTTAAACTGTCAGGCTGATTTGCGCCTTGCCGACTTCCGTGCCAAGCAACGTGCCATGGAAGATGCCCTTATGTCCTTGGAGGTGATATTTTATACTTCGCATGCGTTCACTTAGGAACCTTTTTTTTTTTATAAAAACAAAAGATTAAGCTCCAAATAAATAAATTTGTTCTATTGCATCATTATTGCAGCTGATCAAAAACATCCATGACATGATGGTGAGCAAGACTTATAACTTGTAAGTCAAGTAACTTTAAATTACTTCTTATACATGCAATAAATTCTATAATGTTTCATTCGATGTTTGTTGGATATGACTCATAGTGTATTGATAAGAAGGCTGCGTGGAGGGTGAAGCCCCCGTGGTACGGTCCAGGGGTAATCTTGTAAACTGGACCATAGTTTTCTTTTTGAATGGAAAATGTTAGTTGTTAGATTAATATTTACTCATTCACCCGGGTTTGAATTCAAGACCTCCAACTCCTTTAACCCTCGGCTCAAACCAGTTGAGTTACCCAACCCCCCCAAACTGGACCGTAGTATTTAATTATTTAAACACAAGTTGTACTATGTAAACCATAAACTTGATTAATAGAAAGATACTGCAGCCGCTCTGAATTCCGAGATGTAGACACAATTGGCTGAACTCTGTGATAAAAAATTGTGTGTTCCTTTCCTTGTCTGCGTTTTTCATATTTGTTTTCTTTTGAACCGAGTTTGCTTTTCTGACAATGTTGTGGTGCAGTCCTATTTTCAGAGATAAGGGCTCTCTTTCAGAAAATAATGTTAGAGGTCGAATCATGCTTGAAAAGAATGGAAGAACCACAAATTCCTTTCTTGGGGATGTGACGGCAGAACGGATTACTGCTCTTCAGGTCTTTCTTCTTTTCCATTTTCTTTTCAGGTTCTGTTTCAATACGAAACAGTTCCCCTAATTCAGTATGAATCAGGAAACATATCAATCATCACGTACTAAGATTTTAGTATCTATAGGAAGCTTACTGGAGTATGGCATCTGCACTTTCTGAAGCAGATGGAATTGATTACACTGATCCTGAAGAGGTTAGTTTAGCTTCCTGATAAAGTTTTATGATCGACATTCCTATCACTATTTATGCATTCATAGTAAACACACTTTTCTACTTTGAGCAGCTTGAGTTGTTAATCACAACTCTTATAGACCTTGATGCAATGGACGGTAAACAAAGTGTATCTTTGTTAGCAGAGTGTTCTAGTTCCCCTGATGTCGGTACTAGGTAAGGTTCCTTTGATGTTAAGATCTTTCAGGAATCAGATCGCATTCTCTATCCAATGCACCTATATGCCATGATGTTCATTAGTATGATTGGCACCGCGATATGAGTTTGTACTATTCCTAATTGACATATTTTCATCATTCTTTGACAAGGTCAAAACATTCTCAAATGCAGGAAAATTAGAATTCTCTCAAACCAAGTTATGCAATATTGAATTAGTAATTAAGTAGTAGCAAAAAATAGTTACCTAACTGATTACTTTATTTCTAAAAAATATGTGGTAATGAGTAGTAACATTCATAGAGATCACTTGGAAATAAACCTGCCAAATAAAGAGCAAGTTTAAAATATGTGAGTATAGGATTATTCTCCATACGTTCATATATATCATGATTTTTGTTGTAAAAAATAGAGTATAGTATCAATATGAATATGAATAGGGATTAGTATTTTATCGTTTCTAATTCCATCTAGCATATTATCATCTCATATTAAATATCAATTTCAGTTTATATCATCTCCTTTGTACTCTCTCTTTAAACTTAAAACCTTATAATTGAAATGGCTAGCTTGAATGCAAAATATTACGACCTTTGCTTATTTTCCTTGTCCGTGCATGTAAACTTCTAGACGAGCTTTAGCGAAGGCACTGGCAGCAGCACCATCTATGTGGACTCTTGGAAACGCAGGGATGGGGGCATTACAGGTCTGTGATTTGTCATTTTTCGTAGAAAGTACTTTTCAAAAACAGTGATTATCAGATAAAATAATCTCGAGAATATTTTTAGAGATTTTTATTTGAAGCTGAAGTTGATTTGTGTTTGTTTGTAATAGTGAAAATCACTTCTTTAATATTTTCTCTCATATACCGCATTCCTTAAAATCATTTTTTTAGAAGCTACTATAAATTATAGCTTCTCATTTTAATCAAAAGTAGTTATTTTTTAGATTCTGATTAGTTTAGAAAACTTAAACACATATTTTTTTTTTTGACACTAACTTAAACACACATAAAACCACTAGAAATGATTTTTTTAATTAAAAAAAAAAAGTTAATTTTCTTTTGAATAGTCTAAAAAGACGATCTCATATAGTTTCAAATTTGCCCTTTAGCAAAGTTGACACGTTTGGTTCTTGTTGTAGAGGCTGGCCGAGGATAGCAATCCAGCCATTGCAGCTGCAGCATCCAAAGCTATATATGAACTGAAAAAGCAATGGGAAATAGAAGAAGGGGATAGTTGGAGGTTTATGATGGATGAAAGCACCAAGGAAGAAAATGAAACCTGA

Protein sequence

>MS.gene26111.t1

MALTANKVSSGPILTNRATLCRSHGSSSPRINRIQFSRVRLENGHLNNDSVLNERSTLFNDWFRFVNGRNPVSLISKTSSVSCKSTGANNTEEKECVTTYDDVSDLTRRHAEDEKNDRVRSVRGLSEAYRFACNDAKFLSRGIMRMDERARQDVAFLGTEFLKLDARARKDTEKIDRGVKEKAKRLNRIATILKDIAQTRLKSAADEHWSDGALEADLRLADFRAKQRAMEDALMSLELIKNIHDMMVSKTYNFPIFRDKGSLSENNVRGRIMLEKNGRTTNSFLGDVTAERITALQEAYWSMASALSEADGIDYTDPEELELLITTLIDLDAMDGKQSVSLLAECSSSPDVGTRRALAKALAAAPSMWTLGNAGMGALQRLAEDSNPAIAAAASKAIYELKKQWEIEEGDSWRFMMDESTKEENET