Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05033.t1 | XP_003600618.2 | 96.3 | 216 | 6 | 2 | 1 | 214 | 2 | 217 | 8.70E-107 | 396.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05033.t1 | C6TCJ2 | 73.1 | 201 | 46 | 2 | 1 | 200 | 2 | 195 | 2.6e-75 | 283.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05033.t1 | G7J7X5 | 96.3 | 216 | 6 | 2 | 1 | 214 | 2 | 217 | 6.2e-107 | 396.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05032 | MS.gene05033 | 0.835729 | 1.42E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05033 | MS.gene81770 | PPI |
| MS.gene056922 | MS.gene05033 | PPI |
| MS.gene056925 | MS.gene05033 | PPI |
| MS.gene05033 | MS.gene056920 | PPI |
| MS.gene056924 | MS.gene05033 | PPI |
| MS.gene034840 | MS.gene05033 | PPI |
| MS.gene065728 | MS.gene05033 | PPI |
| MS.gene034836 | MS.gene05033 | PPI |
| MS.gene81771 | MS.gene05033 | PPI |
| MS.gene034838 | MS.gene05033 | PPI |
| MS.gene065729 | MS.gene05033 | PPI |
| MS.gene05033 | MS.gene056923 | PPI |
| MS.gene034839 | MS.gene05033 | PPI |
| MS.gene065724 | MS.gene05033 | PPI |
| MS.gene81774 | MS.gene05033 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05033.t1 | MTR_3g064310 | 96.296 | 216 | 6 | 2 | 1 | 214 | 2 | 217 | 1.86e-150 | 416 |
| MS.gene05033.t1 | MTR_5g076480 | 62.791 | 215 | 73 | 3 | 1 | 214 | 1 | 209 | 5.60e-91 | 266 |
| MS.gene05033.t1 | MTR_0160s0040 | 33.735 | 166 | 107 | 3 | 33 | 197 | 13 | 176 | 1.03e-34 | 122 |
| MS.gene05033.t1 | MTR_2g026530 | 31.707 | 164 | 102 | 3 | 40 | 193 | 8 | 171 | 1.53e-19 | 82.4 |
| MS.gene05033.t1 | MTR_2g026530 | 31.707 | 164 | 102 | 3 | 40 | 193 | 28 | 191 | 1.80e-19 | 82.8 |
| MS.gene05033.t1 | MTR_0004s0210 | 29.730 | 148 | 94 | 4 | 41 | 183 | 6 | 148 | 3.73e-15 | 70.5 |
| MS.gene05033.t1 | MTR_0693s0030 | 25.517 | 145 | 91 | 2 | 59 | 193 | 36 | 173 | 3.92e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05033.t1 | AT1G17200 | 66.250 | 160 | 52 | 1 | 40 | 197 | 30 | 189 | 7.01e-74 | 222 |
| MS.gene05033.t1 | AT3G14380 | 51.266 | 158 | 75 | 2 | 41 | 196 | 21 | 178 | 1.36e-45 | 149 |
| MS.gene05033.t1 | AT1G17200 | 56.604 | 106 | 43 | 2 | 106 | 209 | 2 | 106 | 1.00e-34 | 119 |
| MS.gene05033.t1 | AT5G54980 | 36.994 | 173 | 101 | 4 | 37 | 206 | 26 | 193 | 1.21e-27 | 103 |
| MS.gene05033.t1 | AT4G16442 | 31.707 | 164 | 102 | 3 | 40 | 193 | 8 | 171 | 1.83e-16 | 74.3 |
| MS.gene05033.t1 | AT2G35760 | 29.480 | 173 | 112 | 3 | 40 | 202 | 27 | 199 | 1.18e-14 | 70.1 |
| MS.gene05033.t1 | AT1G03700 | 32.331 | 133 | 80 | 4 | 58 | 185 | 24 | 151 | 1.53e-13 | 66.2 |
| MS.gene05033.t1 | AT4G15630 | 29.204 | 113 | 78 | 1 | 79 | 189 | 77 | 189 | 1.27e-12 | 64.3 |
| MS.gene05033.t1 | AT2G27370 | 33.051 | 118 | 76 | 2 | 75 | 189 | 100 | 217 | 6.65e-12 | 62.8 |
| MS.gene05033.t1 | AT4G03540 | 31.148 | 122 | 74 | 4 | 60 | 176 | 26 | 142 | 1.66e-11 | 60.8 |
| MS.gene05033.t1 | AT5G15290 | 34.000 | 100 | 63 | 1 | 76 | 172 | 67 | 166 | 3.14e-11 | 60.5 |
Find 54 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCATTGCCTGTAGTATT+AGG | 0.204568 | 3.4:+66069872 | None:intergenic |
| AACTCAGCTTGTGGCTCTTT+TGG | 0.209207 | 3.4:-66070019 | MS.gene05033:CDS |
| ACAATGACCTTGGAGCTTTC+AGG | 0.215827 | 3.4:-66072570 | MS.gene05033:intron |
| AATTCCGAAGAAAATGATTA+TGG | 0.329214 | 3.4:-66072604 | MS.gene05033:CDS |
| GTCCCACTCTGCTTCGTGCT+TGG | 0.355543 | 3.4:-66070981 | MS.gene05033:CDS |
| GTAGTATTAGGGCAACTTGC+TGG | 0.376513 | 3.4:+66069884 | None:intergenic |
| GATGCAACGTTGTAGGTATT+TGG | 0.377621 | 3.4:-66071067 | MS.gene05033:intron |
| TTCCTGCGTCTTCTTCCAAT+TGG | 0.380100 | 3.4:-66072661 | MS.gene05033:CDS |
| CACATTGCTCCTGCTTTCAA+TGG | 0.389274 | 3.4:-66069851 | MS.gene05033:CDS |
| AGCACGAAGCAGAGTGGGAC+GGG | 0.395692 | 3.4:+66070984 | None:intergenic |
| CCAGTTGCAGCAGCAGCAGC+AGG | 0.421997 | 3.4:+66072733 | None:intergenic |
| GAAAGCTCCAAGGTCATTGT+AGG | 0.431102 | 3.4:+66072573 | None:intergenic |
| GATCATTGCCTGTAGTATTA+GGG | 0.437900 | 3.4:+66069873 | None:intergenic |
| CAACAACAACAGCAGAAAGT+AGG | 0.450086 | 3.4:+66071013 | None:intergenic |
| AGCTACAAGGTCTCCAATGC+AGG | 0.451468 | 3.4:-66072767 | MS.gene05033:CDS |
| ATGGAGACAGTGCAACAGTA+TGG | 0.454804 | 3.4:-66070042 | MS.gene05033:CDS |
| ATTGCTGAACAGCTTGTAAG+AGG | 0.456080 | 3.4:+66069916 | None:intergenic |
| TCTGTTTCCTACAATGACCT+TGG | 0.457093 | 3.4:-66072580 | MS.gene05033:CDS |
| GCTGCTACACAAAGACCAAT+TGG | 0.462827 | 3.4:+66072646 | None:intergenic |
| CACCTCCATCGACGAAGCTC+CGG | 0.464335 | 3.4:+66070081 | None:intergenic |
| CATGCAAATGGCATTTGCGC+AGG | 0.482913 | 3.4:-66071042 | MS.gene05033:CDS |
| AACAACAACAGCAGAAAGTA+GGG | 0.488653 | 3.4:+66071014 | None:intergenic |
| GTAAGCTAGCCATTGAAAGC+AGG | 0.492566 | 3.4:+66069842 | None:intergenic |
| GCACGAAGCAGAGTGGGACG+GGG | 0.493397 | 3.4:+66070985 | None:intergenic |
| GTCTCCAATGCAGGTTGTGA+TGG | 0.501360 | 3.4:-66072758 | MS.gene05033:CDS |
| TGCTGCAACTGGAGAGGAGT+TGG | 0.502957 | 3.4:-66072722 | MS.gene05033:CDS |
| TGCTGCTGCTGCAACTGGAG+AGG | 0.510100 | 3.4:-66072728 | MS.gene05033:CDS |
| TAGTATTAGGGCAACTTGCT+GGG | 0.513690 | 3.4:+66069885 | None:intergenic |
| CGGAGCTTCGTCGATGGAGG+TGG | 0.513738 | 3.4:-66070080 | MS.gene05033:CDS |
| GGTGCCATCACAACCTGCAT+TGG | 0.517277 | 3.4:+66072754 | None:intergenic |
| AGGTATTTGGTGCATGCAAA+TGG | 0.521302 | 3.4:-66071054 | MS.gene05033:CDS |
| CACTGTCTCCATTCTCAGCT+AGG | 0.525126 | 3.4:+66070053 | None:intergenic |
| ATTGTGATAATTATGGAGAA+AGG | 0.525376 | 3.4:-66072808 | None:intergenic |
| ATAATTATGGAGAAAGGAAG+TGG | 0.529032 | 3.4:-66072802 | None:intergenic |
| CACGAAGCAGAGTGGGACGG+GGG | 0.532745 | 3.4:+66070986 | None:intergenic |
| GTGGTGTACCTAGCTGAGAA+TGG | 0.532841 | 3.4:-66070061 | MS.gene05033:CDS |
| ACAGCTTGTAAGAGGAAATG+AGG | 0.545616 | 3.4:+66069924 | None:intergenic |
| GCAAGTTGCCCTAATACTAC+AGG | 0.548179 | 3.4:-66069881 | MS.gene05033:CDS |
| GTACTGTAGTTTCAGCTACA+AGG | 0.562194 | 3.4:-66072780 | MS.gene05033:CDS |
| CGCCGGAGCTTCGTCGATGG+AGG | 0.564319 | 3.4:-66070083 | MS.gene05033:CDS |
| GAGCGCCGGAGCTTCGTCGA+TGG | 0.569828 | 3.4:-66070086 | MS.gene05033:CDS |
| GTCCAAGCACGAAGCAGAGT+GGG | 0.571236 | 3.4:+66070979 | None:intergenic |
| ACGAAGCAGAGTGGGACGGG+GGG | 0.580397 | 3.4:+66070987 | None:intergenic |
| TCAGCAGTGCGTAGGAAGGA+AGG | 0.590495 | 3.4:+66072688 | None:intergenic |
| AAGCACGAAGCAGAGTGGGA+CGG | 0.590676 | 3.4:+66070983 | None:intergenic |
| CAGCTTGTAAGAGGAAATGA+GGG | 0.591356 | 3.4:+66069925 | None:intergenic |
| TGTCTCAGCAGTGCGTAGGA+AGG | 0.600277 | 3.4:+66072684 | None:intergenic |
| AAAAGGGAGGAACCTGGTCA+AGG | 0.601094 | 3.4:+66070947 | None:intergenic |
| ATATATACCTGAAAGCTCCA+AGG | 0.630274 | 3.4:+66072563 | None:intergenic |
| GGAATGTCTCAGCAGTGCGT+AGG | 0.633276 | 3.4:+66072680 | None:intergenic |
| GCAACTGGAGAGGAGTTGGA+AGG | 0.645729 | 3.4:-66072718 | MS.gene05033:CDS |
| GACCAATTGGAAGAAGACGC+AGG | 0.654347 | 3.4:+66072659 | None:intergenic |
| AGTCCAAGCACGAAGCAGAG+TGG | 0.657174 | 3.4:+66070978 | None:intergenic |
| ACAGTATGGAACTCAGCTTG+TGG | 0.703926 | 3.4:-66070028 | MS.gene05033:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTAGTTTTATTTTTTT+GGG | + | chr3.4:66070569-66070588 | None:intergenic | 10.0% |
| !!! | CATATTTTTAATTGAAATTT+AGG | + | chr3.4:66072297-66072316 | None:intergenic | 10.0% |
| !!! | TCAATTTAGTTTTATTTTTT+TGG | + | chr3.4:66070570-66070589 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTCACTTTA+TGG | - | chr3.4:66071186-66071205 | MS.gene05033:intron | 10.0% |
| !! | AAATTAAAGAATGAATTTAG+TGG | + | chr3.4:66070503-66070522 | None:intergenic | 15.0% |
| !! | GAAAAATAATTTATAAACAG+TGG | + | chr3.4:66070750-66070769 | None:intergenic | 15.0% |
| !! | TCAATTAAAAATATGCTTAA+TGG | - | chr3.4:66072302-66072321 | MS.gene05033:intron | 15.0% |
| !!! | CTAAAAAAATATTTTAATGG+AGG | + | chr3.4:66070464-66070483 | None:intergenic | 15.0% |
| !!! | TTAGTTGTATTTTTGATTTT+TGG | + | chr3.4:66072135-66072154 | None:intergenic | 15.0% |
| !!! | TTAGTTTTTTTAGATTGTAA+CGG | - | chr3.4:66070244-66070263 | MS.gene05033:intron | 15.0% |
| !!! | TTTATATGCTATTTTTAAGT+AGG | - | chr3.4:66071085-66071104 | MS.gene05033:intron | 15.0% |
| !! | AAAAACTAAAGAGAAATTCT+TGG | + | chr3.4:66070233-66070252 | None:intergenic | 20.0% |
| !! | AATTTATAAAAACATGCCAA+TGG | + | chr3.4:66072051-66072070 | None:intergenic | 20.0% |
| !! | ACTAATTTGATCTTACATAA+TGG | + | chr3.4:66072174-66072193 | None:intergenic | 20.0% |
| !! | TAAAATAGCGTTAGATATAT+AGG | + | chr3.4:66071920-66071939 | None:intergenic | 20.0% |
| !! | TAATCAGTAATCTAATTGAA+TGG | - | chr3.4:66071837-66071856 | MS.gene05033:intron | 20.0% |
| !! | TATCTTTATAAGCTCAATTA+AGG | - | chr3.4:66070978-66070997 | MS.gene05033:CDS | 20.0% |
| !! | TGGCTAACTTTATTATTAAT+TGG | + | chr3.4:66070683-66070702 | None:intergenic | 20.0% |
| !! | TTAAGGATCTTTAAATTCTA+TGG | - | chr3.4:66070995-66071014 | MS.gene05033:CDS | 20.0% |
| !! | TTAATTCTTGATATTTGACT+TGG | - | chr3.4:66071499-66071518 | MS.gene05033:intron | 20.0% |
| !! | TTATGTATGTTAATACCTAT+AGG | + | chr3.4:66072533-66072552 | None:intergenic | 20.0% |
| !!! | AAAATCGTTTTGTAAAGTAA+AGG | - | chr3.4:66070894-66070913 | MS.gene05033:intron | 20.0% |
| !!! | AATTTTGGTTAGTGATTTTT+TGG | - | chr3.4:66071547-66071566 | MS.gene05033:intron | 20.0% |
| !!! | ATCATATCAGATTTTTGTAT+TGG | - | chr3.4:66070854-66070873 | MS.gene05033:intron | 20.0% |
| !!! | CGCAATTTTTTTTTTTTTTG+AGG | - | chr3.4:66071728-66071747 | MS.gene05033:intron | 20.0% |
| !!! | CTTGTAAAAAAAACAGTTTT+GGG | + | chr3.4:66072440-66072459 | None:intergenic | 20.0% |
| !!! | TGGCATGTTTTTATAAATTA+TGG | - | chr3.4:66072052-66072071 | MS.gene05033:intron | 20.0% |
| !!! | TTGACTTGGAATATATATTT+TGG | - | chr3.4:66071513-66071532 | MS.gene05033:intron | 20.0% |
| !!! | TTGATTAATGCACTATTTTA+TGG | - | chr3.4:66071144-66071163 | MS.gene05033:intron | 20.0% |
| !!! | TTGGTCAAACTAAATAATTT+TGG | - | chr3.4:66071532-66071551 | MS.gene05033:intron | 20.0% |
| ! | AAAATCGATGTGTAAAGTAA+AGG | - | chr3.4:66070950-66070969 | MS.gene05033:intron | 25.0% |
| ! | AATTCCGAAGAAAATGATTA+TGG | - | chr3.4:66070039-66070058 | MS.gene05033:CDS | 25.0% |
| ! | ATTAAAATAGAGTCAACAAG+TGG | + | chr3.4:66071361-66071380 | None:intergenic | 25.0% |
| ! | ATTAATCAACCCTTATTATC+TGG | + | chr3.4:66071133-66071152 | None:intergenic | 25.0% |
| ! | ATTATTGAAATAGCAACACT+TGG | + | chr3.4:66072387-66072406 | None:intergenic | 25.0% |
| ! | CACAAATATAAACATGTTGA+AGG | + | chr3.4:66072344-66072363 | None:intergenic | 25.0% |
| ! | CCAAACATGAAATTAAACTT+AGG | - | chr3.4:66072464-66072483 | MS.gene05033:intron | 25.0% |
| ! | GTTTATATTTGTGCAATTTG+TGG | - | chr3.4:66072351-66072370 | MS.gene05033:intron | 25.0% |
| ! | TATTATGCTTTAGTCATTGA+TGG | - | chr3.4:66071437-66071456 | MS.gene05033:intron | 25.0% |
| ! | TCTAATTGAATGGAGAAAAA+TGG | - | chr3.4:66071847-66071866 | MS.gene05033:intron | 25.0% |
| ! | TGTATCTCTTAGACTATAAA+AGG | + | chr3.4:66071981-66072000 | None:intergenic | 25.0% |
| ! | TTTAGTAGTTAGATTGAGAT+TGG | + | chr3.4:66072244-66072263 | None:intergenic | 25.0% |
| !! | AATTCATTATATTTTGTGCG+TGG | - | chr3.4:66071802-66071821 | MS.gene05033:intron | 25.0% |
| !! | AGAACCATAATCATTTTCTT+CGG | + | chr3.4:66070046-66070065 | None:intergenic | 25.0% |
| !! | CCTAAGTTTAATTTCATGTT+TGG | + | chr3.4:66072467-66072486 | None:intergenic | 25.0% |
| !! | GCTTGTAAAAAAAACAGTTT+TGG | + | chr3.4:66072441-66072460 | None:intergenic | 25.0% |
| !! | GTAAAGGAGACTTTTTATAT+TGG | - | chr3.4:66070910-66070929 | MS.gene05033:intron | 25.0% |
| !! | TATGCTTAATGGATCATATA+TGG | - | chr3.4:66072313-66072332 | MS.gene05033:intron | 25.0% |
| !! | TTTTCTTTACTTGTTTGAGT+AGG | + | chr3.4:66070115-66070134 | None:intergenic | 25.0% |
| !!! | AATGAATTTAGTGGTTTTGA+TGG | + | chr3.4:66070494-66070513 | None:intergenic | 25.0% |
| !!! | CGATTTTGTAAACATTGATT+TGG | + | chr3.4:66070881-66070900 | None:intergenic | 25.0% |
| ATAATAAAGTTAGCCACTGT+TGG | - | chr3.4:66070687-66070706 | MS.gene05033:intron | 30.0% | |
| ATGTCTTACCCTATTGAATT+TGG | - | chr3.4:66070786-66070805 | MS.gene05033:intron | 30.0% | |
| ATTTACCCACCAAATTCAAT+AGG | + | chr3.4:66070798-66070817 | None:intergenic | 30.0% | |
| GGCAAATGAAATTGGAATTT+AGG | - | chr3.4:66071461-66071480 | MS.gene05033:intron | 30.0% | |
| TAAATAACAATCTCCAACAG+TGG | + | chr3.4:66070703-66070722 | None:intergenic | 30.0% | |
| TAGCGTTAGATATATAGGAT+AGG | + | chr3.4:66071915-66071934 | None:intergenic | 30.0% | |
| TGCAAGATTCCAGATAATAA+GGG | - | chr3.4:66071121-66071140 | MS.gene05033:intron | 30.0% | |
| TGGAGAAAAATGGTACAAAA+TGG | - | chr3.4:66071857-66071876 | MS.gene05033:intron | 30.0% | |
| TGTAACGATTTCTTTCCTAT+AGG | - | chr3.4:66072515-66072534 | MS.gene05033:intron | 30.0% | |
| TTTACCCACCAAATTCAATA+GGG | + | chr3.4:66070797-66070816 | None:intergenic | 30.0% | |
| ! | ATTAATTTTGCAACATCCGT+AGG | - | chr3.4:66070293-66070312 | MS.gene05033:intron | 30.0% |
| ! | GATATTAGTGTCTATCGATT+TGG | + | chr3.4:66070837-66070856 | None:intergenic | 30.0% |
| ! | TTTTGGTCAATTTTGTCACA+AGG | - | chr3.4:66072641-66072660 | MS.gene05033:CDS | 30.0% |
| !!! | GTTAGTGATTTTTTGGTTGT+TGG | - | chr3.4:66071554-66071573 | MS.gene05033:intron | 30.0% |
| !!! | GTTTTTTTAGATTGTAACGG+TGG | - | chr3.4:66070247-66070266 | MS.gene05033:intron | 30.0% |
| AAATTGCGTGTGAACAGAAA+AGG | + | chr3.4:66071716-66071735 | None:intergenic | 35.0% | |
| AACAACAACAGCAGAAAGTA+GGG | + | chr3.4:66071632-66071651 | None:intergenic | 35.0% | |
| AATTGCGTGTGAACAGAAAA+GGG | + | chr3.4:66071715-66071734 | None:intergenic | 35.0% | |
| ATATATACCTGAAAGCTCCA+AGG | + | chr3.4:66070083-66070102 | None:intergenic | 35.0% | |
| CTTACCCTATTGAATTTGGT+GGG | - | chr3.4:66070790-66070809 | MS.gene05033:intron | 35.0% | |
| GATCATTGCCTGTAGTATTA+GGG | + | chr3.4:66072773-66072792 | None:intergenic | 35.0% | |
| GTGCAAGATTCCAGATAATA+AGG | - | chr3.4:66071120-66071139 | MS.gene05033:intron | 35.0% | |
| TATGCTTTAGTCATTGATGG+TGG | - | chr3.4:66071440-66071459 | MS.gene05033:intron | 35.0% | |
| TCTTACCCTATTGAATTTGG+TGG | - | chr3.4:66070789-66070808 | MS.gene05033:intron | 35.0% | |
| TGATCATTGCCTGTAGTATT+AGG | + | chr3.4:66072774-66072793 | None:intergenic | 35.0% | |
| ! | ACATACATAATTTTGAGCGC+CGG | - | chr3.4:66072543-66072562 | MS.gene05033:intron | 35.0% |
| ! | CGCTTTTAGTGGTATGTTTA+TGG | + | chr3.4:66072026-66072045 | None:intergenic | 35.0% |
| ! | TATTATCTGGAATCTTGCAC+AGG | + | chr3.4:66071120-66071139 | None:intergenic | 35.0% |
| !! | CATCTGATTTGATTTGTGCA+TGG | - | chr3.4:66070350-66070369 | MS.gene05033:intron | 35.0% |
| !! | TTGATGGTGGCAAATGAAAT+TGG | - | chr3.4:66071453-66071472 | MS.gene05033:intron | 35.0% |
| ACAGCTTGTAAGAGGAAATG+AGG | + | chr3.4:66072722-66072741 | None:intergenic | 40.0% | |
| ATAGGGTAAGACATGATGAG+AGG | + | chr3.4:66070780-66070799 | None:intergenic | 40.0% | |
| ATTGCTGAACAGCTTGTAAG+AGG | + | chr3.4:66072730-66072749 | None:intergenic | 40.0% | |
| CAACAACAACAGCAGAAAGT+AGG | + | chr3.4:66071633-66071652 | None:intergenic | 40.0% | |
| CAGCTTGTAAGAGGAAATGA+GGG | + | chr3.4:66072721-66072740 | None:intergenic | 40.0% | |
| GAGAATTATTACTCCACCAG+TGG | + | chr3.4:66070326-66070345 | None:intergenic | 40.0% | |
| GATGCAACGTTGTAGGTATT+TGG | - | chr3.4:66071576-66071595 | MS.gene05033:intron | 40.0% | |
| GTACTGTAGTTTCAGCTACA+AGG | - | chr3.4:66069863-66069882 | MS.gene05033:CDS | 40.0% | |
| TATCATGTGCAAGATTGCAC+AGG | + | chr3.4:66071231-66071250 | None:intergenic | 40.0% | |
| TCTGTTTCCTACAATGACCT+TGG | - | chr3.4:66070063-66070082 | MS.gene05033:CDS | 40.0% | |
| TGCAAGATTGCACAGGATAA+GGG | + | chr3.4:66071224-66071243 | None:intergenic | 40.0% | |
| ! | GACTTTCTTTTTCCTTGACC+AGG | - | chr3.4:66071684-66071703 | MS.gene05033:intron | 40.0% |
| ! | TAGTATTAGGGCAACTTGCT+GGG | + | chr3.4:66072761-66072780 | None:intergenic | 40.0% |
| !! | AGGTATTTGGTGCATGCAAA+TGG | - | chr3.4:66071589-66071608 | MS.gene05033:intron | 40.0% |
| ACAATGACCTTGGAGCTTTC+AGG | - | chr3.4:66070073-66070092 | MS.gene05033:CDS | 45.0% | |
| ACAGTATGGAACTCAGCTTG+TGG | - | chr3.4:66072615-66072634 | MS.gene05033:CDS | 45.0% | |
| ACGCATCGAATTTGAGGATG+AGG | + | chr3.4:66071046-66071065 | None:intergenic | 45.0% | |
| ATGGAGACAGTGCAACAGTA+TGG | - | chr3.4:66072601-66072620 | MS.gene05033:CDS | 45.0% | |
| CACATTGCTCCTGCTTTCAA+TGG | - | chr3.4:66072792-66072811 | MS.gene05033:CDS | 45.0% | |
| CACCAGTGGAAACAAACCTA+CGG | + | chr3.4:66070312-66070331 | None:intergenic | 45.0% | |
| CGTCTTACGCATCGAATTTG+AGG | + | chr3.4:66071052-66071071 | None:intergenic | 45.0% | |
| GAAAGCTCCAAGGTCATTGT+AGG | + | chr3.4:66070073-66070092 | None:intergenic | 45.0% | |
| GCAAGATTGCACAGGATAAG+GGG | + | chr3.4:66071223-66071242 | None:intergenic | 45.0% | |
| GCAAGTTGCCCTAATACTAC+AGG | - | chr3.4:66072762-66072781 | MS.gene05033:CDS | 45.0% | |
| GCTGCTACACAAAGACCAAT+TGG | + | chr3.4:66070000-66070019 | None:intergenic | 45.0% | |
| GTAGTATTAGGGCAACTTGC+TGG | + | chr3.4:66072762-66072781 | None:intergenic | 45.0% | |
| GTGCAAGATTGCACAGGATA+AGG | + | chr3.4:66071225-66071244 | None:intergenic | 45.0% | |
| GTTGTTGGATGCAACGTTGT+AGG | - | chr3.4:66071569-66071588 | MS.gene05033:intron | 45.0% | |
| TTCCTGCGTCTTCTTCCAAT+TGG | - | chr3.4:66069982-66070001 | MS.gene05033:CDS | 45.0% | |
| ! | AACTCAGCTTGTGGCTCTTT+TGG | - | chr3.4:66072624-66072643 | MS.gene05033:CDS | 45.0% |
| ! | AGACATGATGAGAGGCGTAT+TGG | + | chr3.4:66070772-66070791 | None:intergenic | 45.0% |
| ! | ATCCGTAGGTTTGTTTCCAC+TGG | - | chr3.4:66070307-66070326 | MS.gene05033:intron | 45.0% |
| ! | TACCACTAAAAGCGCACCAT+TGG | - | chr3.4:66072032-66072051 | MS.gene05033:intron | 45.0% |
| ! | TTTTGTGCGTGGTACATGAC+AGG | - | chr3.4:66071813-66071832 | MS.gene05033:intron | 45.0% |
| !!! | TTACTAAAAAAATATTTTAA+TGG | + | chr3.4:66070467-66070486 | None:intergenic | 5.0% |
| AAAAGGGAGGAACCTGGTCA+AGG | + | chr3.4:66071699-66071718 | None:intergenic | 50.0% | |
| AGCTACAAGGTCTCCAATGC+AGG | - | chr3.4:66069876-66069895 | MS.gene05033:CDS | 50.0% | |
| CACTGTCTCCATTCTCAGCT+AGG | + | chr3.4:66072593-66072612 | None:intergenic | 50.0% | |
| CATGCAAATGGCATTTGCGC+AGG | - | chr3.4:66071601-66071620 | MS.gene05033:intron | 50.0% | |
| GAACAGAAAAGGGAGGAACC+TGG | + | chr3.4:66071705-66071724 | None:intergenic | 50.0% | |
| GACCAATTGGAAGAAGACGC+AGG | + | chr3.4:66069987-66070006 | None:intergenic | 50.0% | |
| GTCTCCAATGCAGGTTGTGA+TGG | - | chr3.4:66069885-66069904 | MS.gene05033:CDS | 50.0% | |
| GTGGTGTACCTAGCTGAGAA+TGG | - | chr3.4:66072582-66072601 | MS.gene05033:CDS | 50.0% | |
| TGCGTGTGAACAGAAAAGGG+AGG | + | chr3.4:66071712-66071731 | None:intergenic | 50.0% | |
| ! | CGTAGGTTTGTTTCCACTGG+TGG | - | chr3.4:66070310-66070329 | MS.gene05033:intron | 50.0% |
| ! | TGCCAATGGTGCGCTTTTAG+TGG | + | chr3.4:66072037-66072056 | None:intergenic | 50.0% |
| AAGCACGAAGCAGAGTGGGA+CGG | + | chr3.4:66071663-66071682 | None:intergenic | 55.0% | |
| AGTCCAAGCACGAAGCAGAG+TGG | + | chr3.4:66071668-66071687 | None:intergenic | 55.0% | |
| GCAACTGGAGAGGAGTTGGA+AGG | - | chr3.4:66069925-66069944 | MS.gene05033:CDS | 55.0% | |
| GGAATGTCTCAGCAGTGCGT+AGG | + | chr3.4:66069966-66069985 | None:intergenic | 55.0% | |
| GTCCAAGCACGAAGCAGAGT+GGG | + | chr3.4:66071667-66071686 | None:intergenic | 55.0% | |
| TCAGCAGTGCGTAGGAAGGA+AGG | + | chr3.4:66069958-66069977 | None:intergenic | 55.0% | |
| TGCTGCAACTGGAGAGGAGT+TGG | - | chr3.4:66069921-66069940 | MS.gene05033:CDS | 55.0% | |
| TGTCTCAGCAGTGCGTAGGA+AGG | + | chr3.4:66069962-66069981 | None:intergenic | 55.0% | |
| ! | GGTGCCATCACAACCTGCAT+TGG | + | chr3.4:66069892-66069911 | None:intergenic | 55.0% |
| AGCACGAAGCAGAGTGGGAC+GGG | + | chr3.4:66071662-66071681 | None:intergenic | 60.0% | |
| CACCTCCATCGACGAAGCTC+CGG | + | chr3.4:66072565-66072584 | None:intergenic | 60.0% | |
| GTCCCACTCTGCTTCGTGCT+TGG | - | chr3.4:66071662-66071681 | MS.gene05033:intron | 60.0% | |
| TGCTGCTGCTGCAACTGGAG+AGG | - | chr3.4:66069915-66069934 | MS.gene05033:CDS | 60.0% | |
| ACGAAGCAGAGTGGGACGGG+GGG | + | chr3.4:66071659-66071678 | None:intergenic | 65.0% | |
| CACGAAGCAGAGTGGGACGG+GGG | + | chr3.4:66071660-66071679 | None:intergenic | 65.0% | |
| CCAGTTGCAGCAGCAGCAGC+AGG | + | chr3.4:66069913-66069932 | None:intergenic | 65.0% | |
| CCTGCTGCTGCTGCTGCAAC+TGG | - | chr3.4:66069910-66069929 | MS.gene05033:CDS | 65.0% | |
| CGGAGCTTCGTCGATGGAGG+TGG | - | chr3.4:66072563-66072582 | MS.gene05033:intron | 65.0% | |
| GCACGAAGCAGAGTGGGACG+GGG | + | chr3.4:66071661-66071680 | None:intergenic | 65.0% | |
| CGCCGGAGCTTCGTCGATGG+AGG | - | chr3.4:66072560-66072579 | MS.gene05033:intron | 70.0% | |
| !! | GAGCGCCGGAGCTTCGTCGA+TGG | - | chr3.4:66072557-66072576 | MS.gene05033:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 66069847 | 66072818 | 66069847 | ID=MS.gene05033 |
| chr3.4 | mRNA | 66069847 | 66072818 | 66069847 | ID=MS.gene05033.t1;Parent=MS.gene05033 |
| chr3.4 | exon | 66072571 | 66072818 | 66072571 | ID=MS.gene05033.t1.exon1;Parent=MS.gene05033.t1 |
| chr3.4 | CDS | 66072571 | 66072818 | 66072571 | ID=cds.MS.gene05033.t1;Parent=MS.gene05033.t1 |
| chr3.4 | exon | 66070960 | 66071074 | 66070960 | ID=MS.gene05033.t1.exon2;Parent=MS.gene05033.t1 |
| chr3.4 | CDS | 66070960 | 66071074 | 66070960 | ID=cds.MS.gene05033.t1;Parent=MS.gene05033.t1 |
| chr3.4 | exon | 66069847 | 66070128 | 66069847 | ID=MS.gene05033.t1.exon3;Parent=MS.gene05033.t1 |
| chr3.4 | CDS | 66069847 | 66070128 | 66069847 | ID=cds.MS.gene05033.t1;Parent=MS.gene05033.t1 |
| Gene Sequence |
| Protein sequence |
