Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05032.t1 | XP_003600618.2 | 95.9 | 217 | 6 | 2 | 2 | 215 | 1 | 217 | 8.70E-107 | 396.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05032.t1 | C6TCJ2 | 73.1 | 201 | 47 | 2 | 2 | 201 | 1 | 195 | 8.9e-76 | 284.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05032.t1 | G7J7X5 | 95.9 | 217 | 6 | 2 | 2 | 215 | 1 | 217 | 6.3e-107 | 396.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049677 | MS.gene05032 | 0.831129 | 1.99E-55 | -1.69E-46 |
| MS.gene05032 | MS.gene05033 | 0.835729 | 1.42E-56 | -1.69E-46 |
| MS.gene05032 | MS.gene061583 | 0.806132 | 9.54E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05032 | MS.gene065728 | PPI |
| MS.gene05032 | MS.gene034840 | PPI |
| MS.gene05032 | MS.gene065729 | PPI |
| MS.gene05032 | MS.gene056923 | PPI |
| MS.gene05032 | MS.gene034836 | PPI |
| MS.gene05032 | MS.gene065724 | PPI |
| MS.gene05032 | MS.gene81771 | PPI |
| MS.gene05032 | MS.gene056922 | PPI |
| MS.gene05032 | MS.gene056924 | PPI |
| MS.gene05032 | MS.gene81770 | PPI |
| MS.gene05032 | MS.gene034839 | PPI |
| MS.gene05032 | MS.gene056920 | PPI |
| MS.gene05032 | MS.gene81774 | PPI |
| MS.gene05032 | MS.gene056925 | PPI |
| MS.gene034838 | MS.gene05032 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05032.t1 | MTR_3g064310 | 95.853 | 217 | 6 | 2 | 2 | 215 | 1 | 217 | 1.52e-151 | 419 |
| MS.gene05032.t1 | MTR_5g076480 | 62.617 | 214 | 74 | 3 | 3 | 215 | 1 | 209 | 2.80e-91 | 266 |
| MS.gene05032.t1 | MTR_0160s0040 | 33.537 | 164 | 107 | 2 | 36 | 198 | 14 | 176 | 1.85e-34 | 121 |
| MS.gene05032.t1 | MTR_2g026530 | 31.707 | 164 | 102 | 3 | 41 | 194 | 8 | 171 | 1.76e-19 | 82.4 |
| MS.gene05032.t1 | MTR_2g026530 | 31.707 | 164 | 102 | 3 | 41 | 194 | 28 | 191 | 2.30e-19 | 82.8 |
| MS.gene05032.t1 | MTR_0004s0210 | 29.452 | 146 | 93 | 4 | 42 | 182 | 6 | 146 | 4.49e-15 | 70.5 |
| MS.gene05032.t1 | MTR_0693s0030 | 25.517 | 145 | 91 | 2 | 60 | 194 | 36 | 173 | 3.22e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05032.t1 | AT1G17200 | 65.625 | 160 | 53 | 1 | 41 | 198 | 30 | 189 | 1.48e-73 | 221 |
| MS.gene05032.t1 | AT3G14380 | 50.633 | 158 | 76 | 2 | 42 | 197 | 21 | 178 | 2.34e-45 | 149 |
| MS.gene05032.t1 | AT1G17200 | 55.660 | 106 | 44 | 2 | 107 | 210 | 2 | 106 | 1.82e-34 | 119 |
| MS.gene05032.t1 | AT5G54980 | 37.059 | 170 | 99 | 4 | 41 | 207 | 29 | 193 | 3.47e-27 | 102 |
| MS.gene05032.t1 | AT4G16442 | 31.707 | 164 | 102 | 3 | 41 | 194 | 8 | 171 | 1.72e-16 | 74.7 |
| MS.gene05032.t1 | AT2G35760 | 28.877 | 187 | 117 | 4 | 33 | 203 | 13 | 199 | 1.09e-14 | 70.1 |
| MS.gene05032.t1 | AT1G03700 | 31.333 | 150 | 93 | 4 | 42 | 186 | 7 | 151 | 5.32e-14 | 67.4 |
| MS.gene05032.t1 | AT4G15630 | 29.204 | 113 | 78 | 1 | 80 | 190 | 77 | 189 | 7.04e-13 | 65.1 |
| MS.gene05032.t1 | AT2G27370 | 33.898 | 118 | 75 | 2 | 76 | 190 | 100 | 217 | 2.77e-12 | 63.9 |
| MS.gene05032.t1 | AT4G03540 | 31.148 | 122 | 74 | 4 | 61 | 177 | 26 | 142 | 1.45e-11 | 60.8 |
| MS.gene05032.t1 | AT5G15290 | 34.000 | 100 | 63 | 1 | 77 | 173 | 67 | 166 | 2.34e-11 | 60.8 |
| MS.gene05032.t1 | AT4G15620 | 26.549 | 113 | 81 | 1 | 80 | 190 | 77 | 189 | 7.49e-11 | 59.7 |
Find 56 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCAGCTTGTGGCTCTTT+TGG | 0.209207 | 3.4:-66078252 | MS.gene05032:CDS |
| ACAATGACCTTGGAGCTTTC+AGG | 0.215827 | 3.4:-66080835 | MS.gene05032:intron |
| TGGTCATTGCCTGTAGTATT+AGG | 0.217265 | 3.4:+66078105 | None:intergenic |
| AAGCTTGTAAGAGGAAATTA+TGG | 0.310588 | 3.4:+66078158 | None:intergenic |
| GGATGCAAGTTGTAGGTATT+TGG | 0.322631 | 3.4:-66079305 | MS.gene05032:intron |
| GTCCCACTCTGCTTCGTGCT+TGG | 0.355543 | 3.4:-66079219 | MS.gene05032:CDS |
| AATTCCGAAGAGAATGATTA+TGG | 0.368832 | 3.4:-66080869 | MS.gene05032:CDS |
| GTAGTATTAGGGCAACTTGC+TGG | 0.376513 | 3.4:+66078117 | None:intergenic |
| TTCCTGCGTCTTCTTCCAAT+TGG | 0.380100 | 3.4:-66080926 | MS.gene05032:CDS |
| AGCACGAAGCAGAGTGGGAC+GGG | 0.395692 | 3.4:+66079222 | None:intergenic |
| GCACCTGCTGCTGCTACAAC+TGG | 0.405372 | 3.4:-66080998 | MS.gene05032:CDS |
| CACATTGCTCCAGCTTTCAA+TGG | 0.421348 | 3.4:-66078084 | MS.gene05032:CDS |
| GAAAGCTCCAAGGTCATTGT+AGG | 0.431102 | 3.4:+66080838 | None:intergenic |
| CAACAACAACAGCAGAAAGT+AGG | 0.450086 | 3.4:+66079251 | None:intergenic |
| GGTCATTGCCTGTAGTATTA+GGG | 0.451380 | 3.4:+66078106 | None:intergenic |
| AGCTACAAGGTCTCCAATGC+AGG | 0.451468 | 3.4:-66081029 | MS.gene05032:CDS |
| ATTGCTGAAAAGCTTGTAAG+AGG | 0.453945 | 3.4:+66078149 | None:intergenic |
| ATGGAGACAGTGCAACAGTA+TGG | 0.454804 | 3.4:-66078275 | MS.gene05032:CDS |
| TCTCCAGTTGTAGCAGCAGC+AGG | 0.461731 | 3.4:+66080995 | None:intergenic |
| GCTGCTACACAAAGACCAAT+TGG | 0.462827 | 3.4:+66080911 | None:intergenic |
| GTCTCCAATGCAGGTTATGA+TGG | 0.463901 | 3.4:-66081020 | MS.gene05032:CDS |
| CATGCAAATGGCATTTGCGC+AGG | 0.482913 | 3.4:-66079280 | MS.gene05032:CDS |
| AACAACAACAGCAGAAAGTA+GGG | 0.488653 | 3.4:+66079252 | None:intergenic |
| CACCTCCATTGATGAAGCTC+CGG | 0.491278 | 3.4:+66078314 | None:intergenic |
| GCACGAAGCAGAGTGGGACG+GGG | 0.493397 | 3.4:+66079223 | None:intergenic |
| GAGCGCCGGAGCTTCATCAA+TGG | 0.504661 | 3.4:-66078319 | MS.gene05032:CDS |
| GTAAGCTAGCCATTGAAAGC+TGG | 0.510655 | 3.4:+66078075 | None:intergenic |
| TAGTATTAGGGCAACTTGCT+GGG | 0.513690 | 3.4:+66078118 | None:intergenic |
| TGCTACAACTGGAGAGGAGT+TGG | 0.520723 | 3.4:-66080987 | MS.gene05032:CDS |
| AGGTATTTGGTGCATGCAAA+TGG | 0.521302 | 3.4:-66079292 | MS.gene05032:CDS |
| CACTGTCTCCATTCTCAGCT+AGG | 0.525126 | 3.4:+66078286 | None:intergenic |
| TCTGTTTCCTACAATGACCT+TGG | 0.525544 | 3.4:-66080845 | MS.gene05032:CDS |
| AGAGCCATAATCATTCTCTT+CGG | 0.527126 | 3.4:+66080865 | None:intergenic |
| CACGAAGCAGAGTGGGACGG+GGG | 0.532745 | 3.4:+66079224 | None:intergenic |
| GTGGTGTACCTAGCTGAGAA+TGG | 0.532841 | 3.4:-66078294 | MS.gene05032:CDS |
| CGGAGCTTCATCAATGGAGG+TGG | 0.536593 | 3.4:-66078313 | MS.gene05032:CDS |
| ACACAATATAGTGATGATGA+TGG | 0.543875 | 3.4:-66081077 | None:intergenic |
| GGTGCCATCATAACCTGCAT+TGG | 0.545200 | 3.4:+66081016 | None:intergenic |
| GCAAGTTGCCCTAATACTAC+AGG | 0.548179 | 3.4:-66078114 | MS.gene05032:CDS |
| GTACTGTAGTTTCAGCTACA+AGG | 0.558505 | 3.4:-66081042 | MS.gene05032:CDS |
| GTCCAAGCACGAAGCAGAGT+GGG | 0.571236 | 3.4:+66079217 | None:intergenic |
| ACGAAGCAGAGTGGGACGGG+GGG | 0.580397 | 3.4:+66079225 | None:intergenic |
| AAGCACGAAGCAGAGTGGGA+CGG | 0.590676 | 3.4:+66079221 | None:intergenic |
| CGCCGGAGCTTCATCAATGG+AGG | 0.596052 | 3.4:-66078316 | MS.gene05032:CDS |
| ATGATGATGGAGAAAGGTAC+TGG | 0.596215 | 3.4:-66081064 | MS.gene05032:CDS |
| TGTCTCAGCAGTGCGTAGGA+AGG | 0.600277 | 3.4:+66080949 | None:intergenic |
| AAAAGGGAGGAACCTGGTCA+AGG | 0.601094 | 3.4:+66079185 | None:intergenic |
| ATAGTGATGATGATGGAGAA+AGG | 0.601228 | 3.4:-66081070 | None:intergenic |
| ATATATACCTGAAAGCTCCA+AGG | 0.630274 | 3.4:+66080828 | None:intergenic |
| GGAATGTCTCAGCAGTGCGT+AGG | 0.633276 | 3.4:+66080945 | None:intergenic |
| TGCTGCTGCTACAACTGGAG+AGG | 0.641197 | 3.4:-66080993 | MS.gene05032:CDS |
| GACCAATTGGAAGAAGACGC+AGG | 0.654347 | 3.4:+66080924 | None:intergenic |
| AGTCCAAGCACGAAGCAGAG+TGG | 0.657174 | 3.4:+66079216 | None:intergenic |
| ACAACTGGAGAGGAGTTGGA+AGG | 0.657284 | 3.4:-66080983 | MS.gene05032:CDS |
| CATTGAAAGCTGGAGCAATG+TGG | 0.700472 | 3.4:+66078085 | None:intergenic |
| ACAGTATGGAACTCAGCTTG+TGG | 0.703926 | 3.4:-66078261 | MS.gene05032:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGAAAAAAACAATAAAA+TGG | + | chr3.4:66079428-66079447 | None:intergenic | 10.0% |
| !! | CAGTAAAATAAAAAAAAAAA+AGG | - | chr3.4:66078964-66078983 | MS.gene05032:intron | 10.0% |
| !!! | CAATTTAGTTTTATTTTTTT+GGG | + | chr3.4:66078809-66078828 | None:intergenic | 10.0% |
| !!! | CATATTTTTAATTGAAATTT+AGG | + | chr3.4:66080551-66080570 | None:intergenic | 10.0% |
| !!! | TCAATTTAGTTTTATTTTTT+TGG | + | chr3.4:66078810-66078829 | None:intergenic | 10.0% |
| !! | AAATTAAAGAATGAATTTAG+TGG | + | chr3.4:66078743-66078762 | None:intergenic | 15.0% |
| !! | GAAAAATAATTTATAAACAG+TGG | + | chr3.4:66079019-66079038 | None:intergenic | 15.0% |
| !! | TTTAATAACTACTAGTATTT+CGG | - | chr3.4:66079640-66079659 | MS.gene05032:intron | 15.0% |
| !!! | AAAAAAGGTTTTTTTTTTTG+AGG | - | chr3.4:66078979-66078998 | MS.gene05032:intron | 15.0% |
| !!! | ATTAGTTGTATTTTTGTTTT+TGG | + | chr3.4:66080392-66080411 | None:intergenic | 15.0% |
| !!! | CTAAAAAAATATTTTAATGG+AGG | + | chr3.4:66078704-66078723 | None:intergenic | 15.0% |
| !!! | GCAATTTTTTTTTTTTTTTG+AGG | - | chr3.4:66079992-66080011 | MS.gene05032:intron | 15.0% |
| !!! | TTTAGTTTTTTAGATTGTAA+CGG | - | chr3.4:66078484-66078503 | MS.gene05032:intron | 15.0% |
| !!! | TTTATATGCTATTTTTAAGT+AGG | - | chr3.4:66079354-66079373 | MS.gene05032:intron | 15.0% |
| !! | ACTAATTTGATCTTACATAA+TGG | + | chr3.4:66080430-66080449 | None:intergenic | 20.0% |
| !! | ATTAATCAACCTTTATTATC+TGG | + | chr3.4:66079402-66079421 | None:intergenic | 20.0% |
| !! | TAAAATAGCGTTAGATATAT+AGG | + | chr3.4:66080184-66080203 | None:intergenic | 20.0% |
| !! | TAATCAGTAATCTAATTGAA+TGG | - | chr3.4:66080101-66080120 | MS.gene05032:intron | 20.0% |
| !! | TAATTTATAAAACATGCCAA+TGG | + | chr3.4:66080309-66080328 | None:intergenic | 20.0% |
| !! | TATCTTTATAAGCTCAATTA+AGG | - | chr3.4:66079247-66079266 | MS.gene05032:CDS | 20.0% |
| !! | TCAATTAAAAATATGCTTAG+TGG | - | chr3.4:66080556-66080575 | MS.gene05032:intron | 20.0% |
| !! | TGGCTAACTTTATTATTAAT+TGG | + | chr3.4:66078924-66078943 | None:intergenic | 20.0% |
| !! | TGTAATGATTTCTTTACAAT+AGG | - | chr3.4:66080783-66080802 | MS.gene05032:intron | 20.0% |
| !! | TTAAGGATCTTTAAATTCTA+TGG | - | chr3.4:66079264-66079283 | MS.gene05032:CDS | 20.0% |
| !! | TTAATTCTTGATATTTGACT+TGG | - | chr3.4:66079763-66079782 | MS.gene05032:intron | 20.0% |
| !!! | AAAAATGTGTTGATTATTGA+CGG | + | chr3.4:66080592-66080611 | None:intergenic | 20.0% |
| !!! | AAAATCGTTTTGTAAAGTAA+AGG | - | chr3.4:66079163-66079182 | MS.gene05032:intron | 20.0% |
| !!! | AATTTTGGTTAGTGATTTTT+TGG | - | chr3.4:66079811-66079830 | MS.gene05032:intron | 20.0% |
| !!! | ATCATATCAGATTTTTGTAT+TGG | - | chr3.4:66079123-66079142 | MS.gene05032:intron | 20.0% |
| !!! | GTAAAGTTTTTTTCACTTTA+TGG | - | chr3.4:66079453-66079472 | MS.gene05032:intron | 20.0% |
| !!! | TTGACTTGGAATATATATTT+TGG | - | chr3.4:66079777-66079796 | MS.gene05032:intron | 20.0% |
| !!! | TTGGCATGTTTTATAAATTA+TGG | - | chr3.4:66080309-66080328 | MS.gene05032:intron | 20.0% |
| !!! | TTGGTCAAACTAAATAATTT+TGG | - | chr3.4:66079796-66079815 | MS.gene05032:intron | 20.0% |
| ! | AAAATCGATGTGTAAAGTAA+AGG | - | chr3.4:66079219-66079238 | MS.gene05032:CDS | 25.0% |
| ! | ACTAAAGAGAAATTCTTTCT+TGG | + | chr3.4:66078470-66078489 | None:intergenic | 25.0% |
| ! | ATTAAAATAGAGTCAACAAG+TGG | + | chr3.4:66079626-66079645 | None:intergenic | 25.0% |
| ! | ATTATTGAAATAGCAACACT+TGG | + | chr3.4:66080644-66080663 | None:intergenic | 25.0% |
| ! | TAAATAACAATCTCTAACAG+TGG | + | chr3.4:66078944-66078963 | None:intergenic | 25.0% |
| ! | TATTATGCTTTAGTCATTGA+TGG | - | chr3.4:66079701-66079720 | MS.gene05032:intron | 25.0% |
| ! | TCTAATTGAATGGAGAAAAA+TGG | - | chr3.4:66080111-66080130 | MS.gene05032:intron | 25.0% |
| ! | TTTAGCAGTTAGATTAAGAT+TGG | + | chr3.4:66080498-66080517 | None:intergenic | 25.0% |
| !! | AATTCATTATATTTTGTGCG+TGG | - | chr3.4:66080066-66080085 | MS.gene05032:intron | 25.0% |
| !! | GTAAAGGAGACTTTTTATAT+TGG | - | chr3.4:66079179-66079198 | MS.gene05032:intron | 25.0% |
| !! | TTTTAAATCTGTGCAATTTG+TGG | - | chr3.4:66080608-66080627 | MS.gene05032:intron | 25.0% |
| !! | TTTTCTTTACTTGTTTGAGT+AGG | + | chr3.4:66078351-66078370 | None:intergenic | 25.0% |
| !! | TTTTGGTCAATTTTGTCATA+AGG | - | chr3.4:66080909-66080928 | MS.gene05032:CDS | 25.0% |
| !!! | AATGAATTTAGTGGTTTTGA+TGG | + | chr3.4:66078734-66078753 | None:intergenic | 25.0% |
| !!! | CGATTTTGTAAACATTGATT+TGG | + | chr3.4:66079150-66079169 | None:intergenic | 25.0% |
| AAGCTTGTAAGAGGAAATTA+TGG | + | chr3.4:66080989-66081008 | None:intergenic | 30.0% | |
| AATTCCGAAGAGAATGATTA+TGG | - | chr3.4:66078275-66078294 | MS.gene05032:CDS | 30.0% | |
| ATGTCTTACCCTATTGAATT+TGG | - | chr3.4:66079055-66079074 | MS.gene05032:intron | 30.0% | |
| ATTTACCCACCAAATTCAAT+AGG | + | chr3.4:66079067-66079086 | None:intergenic | 30.0% | |
| GGCAAATGAAATTGGAATTT+AGG | - | chr3.4:66079725-66079744 | MS.gene05032:intron | 30.0% | |
| TAGCGTTAGATATATAGGAT+AGG | + | chr3.4:66080179-66080198 | None:intergenic | 30.0% | |
| TGCAAGATTCCAGATAATAA+AGG | - | chr3.4:66079390-66079409 | MS.gene05032:intron | 30.0% | |
| TGCTTGACAAAAAACAGTTT+CGG | + | chr3.4:66080698-66080717 | None:intergenic | 30.0% | |
| TGGAGAAAAATGGTACAAAA+TGG | - | chr3.4:66080121-66080140 | MS.gene05032:intron | 30.0% | |
| TTTACCCACCAAATTCAATA+GGG | + | chr3.4:66079066-66079085 | None:intergenic | 30.0% | |
| ! | GATATTAGTGTCTATCGATT+TGG | + | chr3.4:66079106-66079125 | None:intergenic | 30.0% |
| ! | TTCTCTTTTTATAGTCGAAG+AGG | - | chr3.4:66080232-66080251 | MS.gene05032:intron | 30.0% |
| !!! | AGTTTTTTAGATTGTAACGG+TGG | - | chr3.4:66078487-66078506 | MS.gene05032:intron | 30.0% |
| !!! | GTTAGTGATTTTTTGGTTGT+TGG | - | chr3.4:66079818-66079837 | MS.gene05032:intron | 30.0% |
| AAATTGCGTGTGAACAGAAA+AGG | + | chr3.4:66079979-66079998 | None:intergenic | 35.0% | |
| AACAACAACAGCAGAAAGTA+GGG | + | chr3.4:66079895-66079914 | None:intergenic | 35.0% | |
| AATTGCGTGTGAACAGAAAA+GGG | + | chr3.4:66079978-66079997 | None:intergenic | 35.0% | |
| AGAGCCATAATCATTCTCTT+CGG | + | chr3.4:66078282-66078301 | None:intergenic | 35.0% | |
| ATATATACCTGAAAGCTCCA+AGG | + | chr3.4:66078319-66078338 | None:intergenic | 35.0% | |
| ATTGCTGAAAAGCTTGTAAG+AGG | + | chr3.4:66080998-66081017 | None:intergenic | 35.0% | |
| CACCAATGGAAACAAACTTA+CGG | + | chr3.4:66078552-66078571 | None:intergenic | 35.0% | |
| CCAAACATGAAATGAAACTC+AGG | - | chr3.4:66080721-66080740 | MS.gene05032:intron | 35.0% | |
| CCTGAGTTTCATTTCATGTT+TGG | + | chr3.4:66080724-66080743 | None:intergenic | 35.0% | |
| CTTACCCTATTGAATTTGGT+GGG | - | chr3.4:66079059-66079078 | MS.gene05032:intron | 35.0% | |
| GAGAATTATTACTCCACCAA+TGG | + | chr3.4:66078566-66078585 | None:intergenic | 35.0% | |
| GCTTGACAAAAAACAGTTTC+GGG | + | chr3.4:66080697-66080716 | None:intergenic | 35.0% | |
| TATGCTTTAGTCATTGATGG+TGG | - | chr3.4:66079704-66079723 | MS.gene05032:intron | 35.0% | |
| TCTTACCCTATTGAATTTGG+TGG | - | chr3.4:66079058-66079077 | MS.gene05032:intron | 35.0% | |
| ! | ACATACATAATTTTGAGCGC+CGG | - | chr3.4:66080811-66080830 | MS.gene05032:intron | 35.0% |
| ! | ATCCGTAAGTTTGTTTCCAT+TGG | - | chr3.4:66078547-66078566 | MS.gene05032:intron | 35.0% |
| ! | CGCTTTTAGTGGTATGTTTA+TGG | + | chr3.4:66080284-66080303 | None:intergenic | 35.0% |
| ! | TATTATCTGGAATCTTGCAC+AGG | + | chr3.4:66079389-66079408 | None:intergenic | 35.0% |
| !! | CATCTGATTTGATTTGTGCA+TGG | - | chr3.4:66078590-66078609 | MS.gene05032:intron | 35.0% |
| !! | TTGATGGTGGCAAATGAAAT+TGG | - | chr3.4:66079717-66079736 | MS.gene05032:intron | 35.0% |
| ATAGGGTAAGACATGATGAG+AGG | + | chr3.4:66079049-66079068 | None:intergenic | 40.0% | |
| CAACAACAACAGCAGAAAGT+AGG | + | chr3.4:66079896-66079915 | None:intergenic | 40.0% | |
| CGTCTTACTCATCGAATTTG+AGG | + | chr3.4:66079321-66079340 | None:intergenic | 40.0% | |
| GGATGCAAGTTGTAGGTATT+TGG | - | chr3.4:66079839-66079858 | MS.gene05032:intron | 40.0% | |
| GGTCATTGCCTGTAGTATTA+GGG | + | chr3.4:66081041-66081060 | None:intergenic | 40.0% | |
| GTACTGTAGTTTCAGCTACA+AGG | - | chr3.4:66078102-66078121 | MS.gene05032:CDS | 40.0% | |
| TATCATGTGCAAGATTGCAC+AGG | + | chr3.4:66079498-66079517 | None:intergenic | 40.0% | |
| TCTGTTTCCTACAATGACCT+TGG | - | chr3.4:66078299-66078318 | MS.gene05032:CDS | 40.0% | |
| TGCAAGATTGCACAGGATAA+GGG | + | chr3.4:66079491-66079510 | None:intergenic | 40.0% | |
| TGGTCATTGCCTGTAGTATT+AGG | + | chr3.4:66081042-66081061 | None:intergenic | 40.0% | |
| ! | CGTAAGTTTGTTTCCATTGG+TGG | - | chr3.4:66078550-66078569 | MS.gene05032:intron | 40.0% |
| ! | GACTTTCTTTTTCCTTGACC+AGG | - | chr3.4:66079947-66079966 | MS.gene05032:intron | 40.0% |
| ! | TAGTATTAGGGCAACTTGCT+GGG | + | chr3.4:66081029-66081048 | None:intergenic | 40.0% |
| !! | AGGTATTTGGTGCATGCAAA+TGG | - | chr3.4:66079852-66079871 | MS.gene05032:intron | 40.0% |
| !! | ATGATGATGGAGAAAGGTAC+TGG | - | chr3.4:66078080-66078099 | MS.gene05032:CDS | 40.0% |
| ACAATGACCTTGGAGCTTTC+AGG | - | chr3.4:66078309-66078328 | MS.gene05032:CDS | 45.0% | |
| ACAGTATGGAACTCAGCTTG+TGG | - | chr3.4:66080883-66080902 | MS.gene05032:CDS | 45.0% | |
| ATGGAGACAGTGCAACAGTA+TGG | - | chr3.4:66080869-66080888 | MS.gene05032:CDS | 45.0% | |
| CACATTGCTCCAGCTTTCAA+TGG | - | chr3.4:66081060-66081079 | MS.gene05032:CDS | 45.0% | |
| CATTGAAAGCTGGAGCAATG+TGG | + | chr3.4:66081062-66081081 | None:intergenic | 45.0% | |
| GAAAGCTCCAAGGTCATTGT+AGG | + | chr3.4:66078309-66078328 | None:intergenic | 45.0% | |
| GCAAGATTGCACAGGATAAG+GGG | + | chr3.4:66079490-66079509 | None:intergenic | 45.0% | |
| GCAAGTTGCCCTAATACTAC+AGG | - | chr3.4:66081030-66081049 | MS.gene05032:CDS | 45.0% | |
| GCTGCTACACAAAGACCAAT+TGG | + | chr3.4:66078236-66078255 | None:intergenic | 45.0% | |
| GGTTGTTGGATGCAAGTTGT+AGG | - | chr3.4:66079832-66079851 | MS.gene05032:intron | 45.0% | |
| GTAGTATTAGGGCAACTTGC+TGG | + | chr3.4:66081030-66081049 | None:intergenic | 45.0% | |
| GTCTCCAATGCAGGTTATGA+TGG | - | chr3.4:66078124-66078143 | MS.gene05032:CDS | 45.0% | |
| GTGCAAGATTGCACAGGATA+AGG | + | chr3.4:66079492-66079511 | None:intergenic | 45.0% | |
| TTCCTGCGTCTTCTTCCAAT+TGG | - | chr3.4:66078218-66078237 | MS.gene05032:CDS | 45.0% | |
| ! | AACTCAGCTTGTGGCTCTTT+TGG | - | chr3.4:66080892-66080911 | MS.gene05032:CDS | 45.0% |
| ! | AGACATGATGAGAGGCGTAT+TGG | + | chr3.4:66079041-66079060 | None:intergenic | 45.0% |
| ! | TACCACTAAAAGCGCACCAT+TGG | - | chr3.4:66080290-66080309 | MS.gene05032:intron | 45.0% |
| ! | TTTTGTGCGTGGTACATGAC+AGG | - | chr3.4:66080077-66080096 | MS.gene05032:intron | 45.0% |
| !!! | TAACGGTGGTTTTGTCGCAT+GGG | - | chr3.4:66078501-66078520 | MS.gene05032:intron | 45.0% |
| !!! | TTACTAAAAAAATATTTTAA+TGG | + | chr3.4:66078707-66078726 | None:intergenic | 5.0% |
| AAAAGGGAGGAACCTGGTCA+AGG | + | chr3.4:66079962-66079981 | None:intergenic | 50.0% | |
| ACAACTGGAGAGGAGTTGGA+AGG | - | chr3.4:66078161-66078180 | MS.gene05032:CDS | 50.0% | |
| AGCTACAAGGTCTCCAATGC+AGG | - | chr3.4:66078115-66078134 | MS.gene05032:CDS | 50.0% | |
| CACCTCCATTGATGAAGCTC+CGG | + | chr3.4:66080833-66080852 | None:intergenic | 50.0% | |
| CACTGTCTCCATTCTCAGCT+AGG | + | chr3.4:66080861-66080880 | None:intergenic | 50.0% | |
| CATGCAAATGGCATTTGCGC+AGG | - | chr3.4:66079864-66079883 | MS.gene05032:intron | 50.0% | |
| GAACAGAAAAGGGAGGAACC+TGG | + | chr3.4:66079968-66079987 | None:intergenic | 50.0% | |
| GACCAATTGGAAGAAGACGC+AGG | + | chr3.4:66078223-66078242 | None:intergenic | 50.0% | |
| GTGGTGTACCTAGCTGAGAA+TGG | - | chr3.4:66080850-66080869 | MS.gene05032:CDS | 50.0% | |
| TGCGTGTGAACAGAAAAGGG+AGG | + | chr3.4:66079975-66079994 | None:intergenic | 50.0% | |
| TGCTACAACTGGAGAGGAGT+TGG | - | chr3.4:66078157-66078176 | MS.gene05032:CDS | 50.0% | |
| ! | GGTGCCATCATAACCTGCAT+TGG | + | chr3.4:66078131-66078150 | None:intergenic | 50.0% |
| ! | TGCCAATGGTGCGCTTTTAG+TGG | + | chr3.4:66080295-66080314 | None:intergenic | 50.0% |
| !!! | GTAACGGTGGTTTTGTCGCA+TGG | - | chr3.4:66078500-66078519 | MS.gene05032:intron | 50.0% |
| AAGCACGAAGCAGAGTGGGA+CGG | + | chr3.4:66079926-66079945 | None:intergenic | 55.0% | |
| AGTCCAAGCACGAAGCAGAG+TGG | + | chr3.4:66079931-66079950 | None:intergenic | 55.0% | |
| CGGAGCTTCATCAATGGAGG+TGG | - | chr3.4:66080831-66080850 | MS.gene05032:intron | 55.0% | |
| GGAATGTCTCAGCAGTGCGT+AGG | + | chr3.4:66078202-66078221 | None:intergenic | 55.0% | |
| GTCCAAGCACGAAGCAGAGT+GGG | + | chr3.4:66079930-66079949 | None:intergenic | 55.0% | |
| TCTCCAGTTGTAGCAGCAGC+AGG | + | chr3.4:66078152-66078171 | None:intergenic | 55.0% | |
| TGCTGCTGCTACAACTGGAG+AGG | - | chr3.4:66078151-66078170 | MS.gene05032:CDS | 55.0% | |
| TGTCTCAGCAGTGCGTAGGA+AGG | + | chr3.4:66078198-66078217 | None:intergenic | 55.0% | |
| AGCACGAAGCAGAGTGGGAC+GGG | + | chr3.4:66079925-66079944 | None:intergenic | 60.0% | |
| CGCCGGAGCTTCATCAATGG+AGG | - | chr3.4:66080828-66080847 | MS.gene05032:intron | 60.0% | |
| GCACCTGCTGCTGCTACAAC+TGG | - | chr3.4:66078146-66078165 | MS.gene05032:CDS | 60.0% | |
| GTCCCACTCTGCTTCGTGCT+TGG | - | chr3.4:66079925-66079944 | MS.gene05032:intron | 60.0% | |
| !! | GAGCGCCGGAGCTTCATCAA+TGG | - | chr3.4:66080825-66080844 | MS.gene05032:intron | 60.0% |
| ACGAAGCAGAGTGGGACGGG+GGG | + | chr3.4:66079922-66079941 | None:intergenic | 65.0% | |
| CACGAAGCAGAGTGGGACGG+GGG | + | chr3.4:66079923-66079942 | None:intergenic | 65.0% | |
| GCACGAAGCAGAGTGGGACG+GGG | + | chr3.4:66079924-66079943 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 66078080 | 66081086 | 66078080 | ID=MS.gene05032 |
| chr3.4 | mRNA | 66078080 | 66081086 | 66078080 | ID=MS.gene05032.t1;Parent=MS.gene05032 |
| chr3.4 | exon | 66080836 | 66081086 | 66080836 | ID=MS.gene05032.t1.exon1;Parent=MS.gene05032.t1 |
| chr3.4 | CDS | 66080836 | 66081086 | 66080836 | ID=cds.MS.gene05032.t1;Parent=MS.gene05032.t1 |
| chr3.4 | exon | 66079198 | 66079312 | 66079198 | ID=MS.gene05032.t1.exon2;Parent=MS.gene05032.t1 |
| chr3.4 | CDS | 66079198 | 66079312 | 66079198 | ID=cds.MS.gene05032.t1;Parent=MS.gene05032.t1 |
| chr3.4 | exon | 66078080 | 66078361 | 66078080 | ID=MS.gene05032.t1.exon3;Parent=MS.gene05032.t1 |
| chr3.4 | CDS | 66078080 | 66078361 | 66078080 | ID=cds.MS.gene05032.t1;Parent=MS.gene05032.t1 |
| Gene Sequence |
| Protein sequence |
