Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067034.t1 | XP_003601828.1 | 99.7 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 2.20E-189 | 671.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067034.t1 | P04796 | 90.1 | 335 | 33 | 0 | 3 | 337 | 2 | 336 | 1.0e-174 | 614.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067034.t1 | G7J2H2 | 99.7 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 1.6e-189 | 671.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051433 | MS.gene067034 | 0.81474 | 1.32E-51 | -1.69E-46 |
| MS.gene051963 | MS.gene067034 | 0.803726 | 3.04E-49 | -1.69E-46 |
| MS.gene052494 | MS.gene067034 | 0.824038 | 1.00E-53 | -1.69E-46 |
| MS.gene053097 | MS.gene067034 | 0.840385 | 8.98E-58 | -1.69E-46 |
| MS.gene053421 | MS.gene067034 | 0.810144 | 1.33E-50 | -1.69E-46 |
| MS.gene056040 | MS.gene067034 | -0.800264 | 1.56E-48 | -1.69E-46 |
| MS.gene056647 | MS.gene067034 | 0.81302 | 3.16E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene067034 | -0.824521 | 7.72E-54 | -1.69E-46 |
| MS.gene058170 | MS.gene067034 | 0.825824 | 3.80E-54 | -1.69E-46 |
| MS.gene058171 | MS.gene067034 | 0.822518 | 2.27E-53 | -1.69E-46 |
| MS.gene058172 | MS.gene067034 | 0.840135 | 1.04E-57 | -1.69E-46 |
| MS.gene058173 | MS.gene067034 | 0.818225 | 2.19E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene067034 | 0.829913 | 3.94E-55 | -1.69E-46 |
| MS.gene058175 | MS.gene067034 | 0.822585 | 2.19E-53 | -1.69E-46 |
| MS.gene059545 | MS.gene067034 | 0.82247 | 2.33E-53 | -1.69E-46 |
| MS.gene060187 | MS.gene067034 | 0.818117 | 2.32E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene067034 | -0.807629 | 4.60E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene067034 | MS.gene72216 | PPI |
| MS.gene067034 | MS.gene51927 | PPI |
| MS.gene067034 | MS.gene52287 | PPI |
| MS.gene067034 | MS.gene06894 | PPI |
| MS.gene067034 | MS.gene013566 | PPI |
| MS.gene067034 | MS.gene024334 | PPI |
| MS.gene067034 | MS.gene057128 | PPI |
| MS.gene067034 | MS.gene06683 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067034.t1 | MTR_3g085850 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 691 |
| MS.gene067034.t1 | MTR_4g103920 | 90.060 | 332 | 33 | 0 | 6 | 337 | 5 | 336 | 0.0 | 621 |
| MS.gene067034.t1 | MTR_3g085850 | 99.661 | 295 | 1 | 0 | 46 | 340 | 1 | 295 | 0.0 | 600 |
| MS.gene067034.t1 | MTR_6g022630 | 86.250 | 320 | 44 | 0 | 6 | 325 | 3 | 322 | 0.0 | 577 |
| MS.gene067034.t1 | MTR_2g065470 | 72.781 | 338 | 91 | 1 | 2 | 339 | 78 | 414 | 0.0 | 509 |
| MS.gene067034.t1 | MTR_2g065470 | 72.781 | 338 | 91 | 1 | 2 | 339 | 19 | 355 | 0.0 | 506 |
| MS.gene067034.t1 | MTR_4g103920 | 88.973 | 263 | 29 | 0 | 6 | 268 | 5 | 267 | 5.17e-176 | 489 |
| MS.gene067034.t1 | MTR_2g065470 | 73.457 | 324 | 85 | 1 | 2 | 325 | 78 | 400 | 1.16e-175 | 493 |
| MS.gene067034.t1 | MTR_8g046560 | 76.378 | 254 | 46 | 4 | 84 | 325 | 7 | 258 | 1.75e-126 | 372 |
| MS.gene067034.t1 | MTR_3g115920 | 47.447 | 333 | 166 | 7 | 6 | 332 | 85 | 414 | 4.56e-88 | 272 |
| MS.gene067034.t1 | MTR_7g084800 | 46.687 | 332 | 171 | 5 | 4 | 332 | 67 | 395 | 1.78e-85 | 264 |
| MS.gene067034.t1 | MTR_3g115920 | 46.933 | 326 | 164 | 7 | 6 | 325 | 85 | 407 | 8.77e-85 | 262 |
| MS.gene067034.t1 | MTR_3g115920 | 49.286 | 280 | 137 | 4 | 63 | 338 | 8 | 286 | 1.42e-77 | 240 |
| MS.gene067034.t1 | MTR_8g464820 | 83.108 | 148 | 16 | 2 | 180 | 327 | 1 | 139 | 7.70e-77 | 240 |
| MS.gene067034.t1 | MTR_1680s0010 | 45.000 | 140 | 72 | 2 | 180 | 315 | 1 | 139 | 3.43e-30 | 119 |
| MS.gene067034.t1 | MTR_2g078600 | 80.952 | 63 | 12 | 0 | 220 | 282 | 84 | 146 | 9.79e-26 | 100 |
| MS.gene067034.t1 | MTR_0776s0010 | 37.500 | 128 | 74 | 3 | 4 | 128 | 1786 | 1910 | 5.26e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067034.t1 | AT1G13440 | 89.552 | 335 | 35 | 0 | 3 | 337 | 2 | 336 | 0.0 | 626 |
| MS.gene067034.t1 | AT3G04120 | 89.552 | 335 | 35 | 0 | 3 | 337 | 2 | 336 | 0.0 | 626 |
| MS.gene067034.t1 | AT1G13440 | 82.090 | 335 | 32 | 1 | 3 | 337 | 2 | 308 | 0.0 | 556 |
| MS.gene067034.t1 | AT1G79530 | 72.271 | 339 | 93 | 1 | 2 | 340 | 82 | 419 | 0.0 | 511 |
| MS.gene067034.t1 | AT1G16300 | 71.893 | 338 | 94 | 1 | 3 | 340 | 81 | 417 | 1.47e-180 | 506 |
| MS.gene067034.t1 | AT1G42970 | 47.493 | 339 | 169 | 7 | 6 | 338 | 81 | 416 | 9.08e-95 | 289 |
| MS.gene067034.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 12 | 341 | 3.13e-90 | 274 |
| MS.gene067034.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 12 | 341 | 3.13e-90 | 274 |
| MS.gene067034.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 61 | 390 | 7.45e-90 | 275 |
| MS.gene067034.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 103 | 432 | 1.69e-89 | 275 |
| MS.gene067034.t1 | AT3G26650 | 46.246 | 333 | 173 | 5 | 3 | 332 | 58 | 387 | 2.23e-86 | 266 |
| MS.gene067034.t1 | AT1G12900 | 49.814 | 269 | 132 | 3 | 66 | 332 | 41 | 308 | 8.88e-74 | 231 |
Find 85 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCAAGCTGAAGGGTATTT+TGG | 0.162108 | 3.4:-80144495 | MS.gene067034:CDS |
| CCTCTCCAGTCCTTGCTTGA+TGG | 0.259153 | 3.4:+80144926 | None:intergenic |
| ACTTTGTGAAACTCGTTTCT+TGG | 0.270714 | 3.4:-80144277 | MS.gene067034:CDS |
| GTCAATTTACCGTTCAATAC+TGG | 0.280860 | 3.4:+80144725 | None:intergenic |
| CAGGTTATTAATGACCGATT+TGG | 0.281961 | 3.4:-80145185 | MS.gene067034:CDS |
| CTTGGCAGCTCCAGTGCTGC+TGG | 0.294421 | 3.4:+80144874 | None:intergenic |
| AAAACAGGATTTGGAAGAAT+TGG | 0.309904 | 3.4:-80146304 | MS.gene067034:intron |
| GACACTAAGACCCTTCTCTT+TGG | 0.356905 | 3.4:-80146043 | MS.gene067034:CDS |
| AAACATAGGTGCATCTTTGC+TGG | 0.359553 | 3.4:+80145391 | None:intergenic |
| ATTCAAAGCAATTCCAGCTT+TGG | 0.384329 | 3.4:+80144304 | None:intergenic |
| ATGACAACGAATGGGGTTAC+AGG | 0.389525 | 3.4:-80144253 | MS.gene067034:intron |
| GTGGTATCTACTGACTTTAT+TGG | 0.395775 | 3.4:-80144455 | MS.gene067034:CDS |
| TCACCCCATGGAATCTCCTC+AGG | 0.421872 | 3.4:+80145878 | None:intergenic |
| GCCACTCAGAAGACTGTTGA+TGG | 0.424666 | 3.4:-80144950 | MS.gene067034:CDS |
| AGCAGAAATAACAACCTTCT+TGG | 0.437227 | 3.4:+80145415 | None:intergenic |
| CAAAGCTGCTGCTCACTTGA+AGG | 0.450187 | 3.4:-80145804 | MS.gene067034:intron |
| CAGTTGTTGACCTTACTGTA+AGG | 0.450759 | 3.4:-80144667 | MS.gene067034:CDS |
| AGCATCTTTGATGCCAAAGC+TGG | 0.451793 | 3.4:-80144317 | MS.gene067034:CDS |
| GATTGTCCACATTGCTTCTG+TGG | 0.453352 | 3.4:-80144106 | MS.gene067034:CDS |
| GACCGATTTGGAATCGTTGA+GGG | 0.456120 | 3.4:-80145173 | MS.gene067034:CDS |
| TTGGAAACAATGTTAAGCTC+TGG | 0.470905 | 3.4:+80145338 | None:intergenic |
| TTCTTGGTATGACAACGAAT+GGG | 0.472520 | 3.4:-80144261 | MS.gene067034:CDS |
| TCTTCTCAAGCCTTACAGTA+AGG | 0.474802 | 3.4:+80144657 | None:intergenic |
| AACATCATTCCCAGCAGCAC+TGG | 0.480002 | 3.4:-80144884 | MS.gene067034:CDS |
| GATGCACCTATGTTTGTTGT+TGG | 0.480077 | 3.4:-80145383 | MS.gene067034:CDS |
| TGGGACACGGAATGACATTC+CGG | 0.489853 | 3.4:+80144703 | None:intergenic |
| TTCAAGTATGACACTGTTCA+CGG | 0.491509 | 3.4:-80146097 | MS.gene067034:CDS |
| ATTTGGAAGAATTGGACGAT+TGG | 0.494519 | 3.4:-80146296 | MS.gene067034:CDS |
| TAGCATCTGACAAGAAGATC+AGG | 0.494730 | 3.4:-80146430 | MS.gene067034:CDS |
| GATTACGTTATTGAGTCAAC+TGG | 0.498321 | 3.4:-80145845 | MS.gene067034:CDS |
| GAGATTCCATGGGGTGAGGT+TGG | 0.499881 | 3.4:-80145872 | MS.gene067034:CDS |
| GACCCTCAACGATTCCAAAT+CGG | 0.501135 | 3.4:+80145171 | None:intergenic |
| CTGACTTTATTGGCGATAGC+AGG | 0.501827 | 3.4:-80144445 | MS.gene067034:intron |
| TTTCTTGGTATGACAACGAA+TGG | 0.505583 | 3.4:-80144262 | MS.gene067034:CDS |
| GGAATCAGAGGGCAAGCTGA+AGG | 0.509794 | 3.4:-80144504 | MS.gene067034:CDS |
| GATAAATAAACAACCTGTGA+TGG | 0.511375 | 3.4:+80145130 | None:intergenic |
| CAACTGAAACATCGACGGTT+GGG | 0.515252 | 3.4:+80144684 | None:intergenic |
| TTTCATCACTACTGATTACA+TGG | 0.515255 | 3.4:-80146218 | MS.gene067034:intron |
| CAGCAGCACTGGAGCTGCCA+AGG | 0.520669 | 3.4:-80144873 | MS.gene067034:intron |
| GGCAGCCTTGATCTGCTCAT+AGG | 0.524781 | 3.4:+80144628 | None:intergenic |
| TTGGCAGCTCCAGTGCTGCT+GGG | 0.526344 | 3.4:+80144875 | None:intergenic |
| AAACATCGACGGTTGGGACA+CGG | 0.531370 | 3.4:+80144690 | None:intergenic |
| CTTCTTTCTCACCAAAGAGA+AGG | 0.533597 | 3.4:+80146032 | None:intergenic |
| TTCTTTCTCACCAAAGAGAA+GGG | 0.538245 | 3.4:+80146033 | None:intergenic |
| ACAACTGAAACATCGACGGT+TGG | 0.545734 | 3.4:+80144683 | None:intergenic |
| GTTAGTAGTGCAACTAGCAT+TGG | 0.551894 | 3.4:+80145319 | None:intergenic |
| AACATAGGTGCATCTTTGCT+GGG | 0.553014 | 3.4:+80145392 | None:intergenic |
| ATGGTCCATCAAGCAAGGAC+TGG | 0.555599 | 3.4:-80144931 | MS.gene067034:CDS |
| CTGCCTTGCTCCCCTCGCCA+AGG | 0.563779 | 3.4:-80145297 | MS.gene067034:intron |
| ATGACACTGTTCACGGTCAG+TGG | 0.566865 | 3.4:-80146090 | MS.gene067034:CDS |
| AGCAACCTATGAGCAGATCA+AGG | 0.567372 | 3.4:-80144633 | MS.gene067034:CDS |
| AAACCTTGGCGAGGGGAGCA+AGG | 0.568255 | 3.4:+80145294 | None:intergenic |
| GGAACCCTGAGGAGATTCCA+TGG | 0.575104 | 3.4:-80145883 | MS.gene067034:CDS |
| TTAACACCAACAACAAACAT+AGG | 0.578256 | 3.4:+80145377 | None:intergenic |
| TGAGGAGATTCCATGGGGTG+AGG | 0.584999 | 3.4:-80145876 | MS.gene067034:CDS |
| TGACCGATTTGGAATCGTTG+AGG | 0.585725 | 3.4:-80145174 | MS.gene067034:CDS |
| ATTTGAAACATACAGGCTGT+AGG | 0.586694 | 3.4:-80144758 | MS.gene067034:intron |
| GAACCCTGAGGAGATTCCAT+GGG | 0.589804 | 3.4:-80145882 | MS.gene067034:CDS |
| TCAAGCAAGGACTGGAGAGG+TGG | 0.590129 | 3.4:-80144923 | MS.gene067034:CDS |
| GTATTGAACGGTAAATTGAC+CGG | 0.592350 | 3.4:-80144722 | MS.gene067034:CDS |
| ACCACAGTTCACGCCATCAC+AGG | 0.598843 | 3.4:-80145143 | MS.gene067034:intron |
| AAGATCAGGATCGGAATCAA+CGG | 0.599281 | 3.4:-80146416 | MS.gene067034:intron |
| TGATTAGGGTGGTGCCAAGA+AGG | 0.600438 | 3.4:-80145429 | MS.gene067034:intron |
| CACCCCATGGAATCTCCTCA+GGG | 0.600637 | 3.4:+80145879 | None:intergenic |
| GCTGCTGGGAATGATGTTGA+AGG | 0.601432 | 3.4:+80144889 | None:intergenic |
| TCAGCTCCAACCTCACCCCA+TGG | 0.603751 | 3.4:+80145866 | None:intergenic |
| TGTTGTTGGTGTTAACGAGA+AGG | 0.604083 | 3.4:-80145369 | MS.gene067034:CDS |
| GAATCAGAGGGCAAGCTGAA+GGG | 0.606362 | 3.4:-80144503 | MS.gene067034:CDS |
| GACAATCAAATCAATAACAC+GGG | 0.607012 | 3.4:+80144122 | None:intergenic |
| AGTGTCATACTTGAACATAT+AGG | 0.610966 | 3.4:+80146105 | None:intergenic |
| ATGTAATCAGTAGTGATGAA+AGG | 0.611234 | 3.4:+80146220 | None:intergenic |
| TCTTGGTATGACAACGAATG+GGG | 0.619721 | 3.4:-80144260 | MS.gene067034:CDS |
| GGGTTACACTGAAGATGATG+TGG | 0.627513 | 3.4:-80144474 | MS.gene067034:CDS |
| TCTGACAAGAAGATCAGGAT+CGG | 0.628839 | 3.4:-80146425 | MS.gene067034:CDS |
| TGTTGATGGTCCATCAAGCA+AGG | 0.632457 | 3.4:-80144936 | MS.gene067034:CDS |
| GTCAACAACTGAAACATCGA+CGG | 0.646627 | 3.4:+80144679 | None:intergenic |
| CCATCAAGCAAGGACTGGAG+AGG | 0.655042 | 3.4:-80144926 | MS.gene067034:CDS |
| GGACAATCAAATCAATAACA+CGG | 0.656794 | 3.4:+80144121 | None:intergenic |
| AAAACCAGGGAGGAATCAGA+GGG | 0.660427 | 3.4:-80144515 | MS.gene067034:intron |
| ACCTGTGATGGCGTGAACTG+TGG | 0.667657 | 3.4:+80145142 | None:intergenic |
| AAAGTGCTTCCAGTATTGAA+CGG | 0.668457 | 3.4:-80144734 | MS.gene067034:CDS |
| ATCAAGCCACAGAAGCAATG+TGG | 0.677587 | 3.4:+80144100 | None:intergenic |
| AACCCTGAGGAGATTCCATG+GGG | 0.716862 | 3.4:-80145881 | MS.gene067034:CDS |
| ACCATCAACAGTCTTCTGAG+TGG | 0.726815 | 3.4:+80144949 | None:intergenic |
| TCTGAATAATAGGAACCCTG+AGG | 0.747270 | 3.4:-80145894 | MS.gene067034:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGAAATTTATGTAATT+TGG | - | chr3.4:80145160-80145179 | MS.gene067034:CDS | 10.0% |
| !! | AAATTTGTCAAATTATTACA+TGG | - | chr3.4:80145788-80145807 | MS.gene067034:intron | 15.0% |
| !! | TATCAAAATCTAATTAATTG+TGG | + | chr3.4:80145138-80145157 | None:intergenic | 15.0% |
| !!! | TGTTTGATTAATTTTGTAAT+CGG | + | chr3.4:80144443-80144462 | None:intergenic | 15.0% |
| !!! | TTTTAAATTATTAGCTTCAT+TGG | - | chr3.4:80145388-80145407 | MS.gene067034:CDS | 15.0% |
| !! | AATTAATTACAACATCCAAA+AGG | + | chr3.4:80144675-80144694 | None:intergenic | 20.0% |
| !! | ATTAATTACAACATCCAAAA+GGG | + | chr3.4:80144674-80144693 | None:intergenic | 20.0% |
| !! | TAAACGAGAAATAGATTAAA+CGG | + | chr3.4:80144144-80144163 | None:intergenic | 20.0% |
| !!! | AACTGTTTTAACTTTAAAAC+AGG | - | chr3.4:80144303-80144322 | MS.gene067034:CDS | 20.0% |
| !!! | ATATTGAATTTGAAACATAC+AGG | - | chr3.4:80145857-80145876 | MS.gene067034:CDS | 20.0% |
| !!! | ATTATTTGATTGAGCATTTT+GGG | - | chr3.4:80144873-80144892 | MS.gene067034:intron | 20.0% |
| !!! | TAATTTATGATCTGTGATTT+TGG | - | chr3.4:80144633-80144652 | MS.gene067034:CDS | 20.0% |
| !!! | TATTATTTGATTGAGCATTT+TGG | - | chr3.4:80144872-80144891 | MS.gene067034:intron | 20.0% |
| !!! | TTTAACTTTAAAACAGGATT+TGG | - | chr3.4:80144309-80144328 | MS.gene067034:CDS | 20.0% |
| !!! | TTTTGCAATTTCAACAAAAT+AGG | + | chr3.4:80146090-80146109 | None:intergenic | 20.0% |
| ! | AAAATAGGTTTATGTTAGGA+GGG | + | chr3.4:80146075-80146094 | None:intergenic | 25.0% |
| ! | AAGTTTAACACTTTACTTGA+TGG | + | chr3.4:80146018-80146037 | None:intergenic | 25.0% |
| ! | CAAATTATTACATGGTTGAA+TGG | - | chr3.4:80145796-80145815 | MS.gene067034:intron | 25.0% |
| ! | CAACAAAATAGGTTTATGTT+AGG | + | chr3.4:80146079-80146098 | None:intergenic | 25.0% |
| ! | TATTAATCTTTACTCTTTGC+AGG | - | chr3.4:80145418-80145437 | MS.gene067034:CDS | 25.0% |
| ! | TGATTAACTGATTGATTGTT+TGG | - | chr3.4:80145637-80145656 | MS.gene067034:intron | 25.0% |
| ! | TGATTAAGAGAGAAAAAAAG+TGG | + | chr3.4:80144121-80144140 | None:intergenic | 25.0% |
| ! | TGTATAGAATCATTCAAACA+GGG | + | chr3.4:80145085-80145104 | None:intergenic | 25.0% |
| ! | TTAATTACAACATCCAAAAG+GGG | + | chr3.4:80144673-80144692 | None:intergenic | 25.0% |
| ! | TTATGTAATTTGGATTGTTG+TGG | - | chr3.4:80145170-80145189 | MS.gene067034:CDS | 25.0% |
| !! | GATGAACACTATGTATATTT+TGG | + | chr3.4:80146444-80146463 | None:intergenic | 25.0% |
| !! | TTATTTGATTGAGCATTTTG+GGG | - | chr3.4:80144874-80144893 | MS.gene067034:CDS | 25.0% |
| !! | TTTATCATTATAGAGTACCT+TGG | + | chr3.4:80145769-80145788 | None:intergenic | 25.0% |
| !!! | TGAACTTTATTTTCATTTGC+AGG | - | chr3.4:80146279-80146298 | MS.gene067034:CDS | 25.0% |
| AAAACAGGATTTGGAAGAAT+TGG | - | chr3.4:80144318-80144337 | MS.gene067034:CDS | 30.0% | |
| ACCAATAAACATGCTACAAA+AGG | + | chr3.4:80145365-80145384 | None:intergenic | 30.0% | |
| AGTGTCATACTTGAACATAT+AGG | + | chr3.4:80144520-80144539 | None:intergenic | 30.0% | |
| ATCACAGATCATAAATTACC+TGG | + | chr3.4:80144631-80144650 | None:intergenic | 30.0% | |
| ATCACGATATGACATTGAAT+TGG | - | chr3.4:80146414-80146433 | MS.gene067034:intron | 30.0% | |
| ATGTAATCAGTAGTGATGAA+AGG | + | chr3.4:80144405-80144424 | None:intergenic | 30.0% | |
| CAAAATAGGTTTATGTTAGG+AGG | + | chr3.4:80146076-80146095 | None:intergenic | 30.0% | |
| CCAATAAACATGCTACAAAA+GGG | + | chr3.4:80145364-80145383 | None:intergenic | 30.0% | |
| CTGTATAGAATCATTCAAAC+AGG | + | chr3.4:80145086-80145105 | None:intergenic | 30.0% | |
| GACAATCAAATCAATAACAC+GGG | + | chr3.4:80146503-80146522 | None:intergenic | 30.0% | |
| GATAAATAAACAACCTGTGA+TGG | + | chr3.4:80145495-80145514 | None:intergenic | 30.0% | |
| GGACAATCAAATCAATAACA+CGG | + | chr3.4:80146504-80146523 | None:intergenic | 30.0% | |
| GGAGGGAAAAATTATTCAAT+TGG | + | chr3.4:80146058-80146077 | None:intergenic | 30.0% | |
| TCTGATTGCATCTGAATAAT+AGG | - | chr3.4:80144718-80144737 | MS.gene067034:CDS | 30.0% | |
| TGTTGAAATTGCAAAAACCA+GGG | - | chr3.4:80146094-80146113 | MS.gene067034:CDS | 30.0% | |
| TTAACACCAACAACAAACAT+AGG | + | chr3.4:80145248-80145267 | None:intergenic | 30.0% | |
| TTGTTGAAATTGCAAAAACC+AGG | - | chr3.4:80146093-80146112 | MS.gene067034:CDS | 30.0% | |
| ! | AAACTGTCATGATCAGTTTT+TGG | - | chr3.4:80146231-80146250 | MS.gene067034:CDS | 30.0% |
| ! | GCATTTTGAACTTAAGGTTA+AGG | - | chr3.4:80144557-80144576 | MS.gene067034:intron | 30.0% |
| ! | TTTCATCACTACTGATTACA+TGG | - | chr3.4:80144404-80144423 | MS.gene067034:intron | 30.0% |
| !! | AGGGTATTGAAAAAAAACCT+TGG | + | chr3.4:80145345-80145364 | None:intergenic | 30.0% |
| AATGTCATATCGTGATAGCA+AGG | + | chr3.4:80146410-80146429 | None:intergenic | 35.0% | |
| ACTTTGTGAAACTCGTTTCT+TGG | - | chr3.4:80146345-80146364 | MS.gene067034:intron | 35.0% | |
| AGCAGAAATAACAACCTTCT+TGG | + | chr3.4:80145210-80145229 | None:intergenic | 35.0% | |
| ATTCAAAGCAATTCCAGCTT+TGG | + | chr3.4:80146321-80146340 | None:intergenic | 35.0% | |
| ATTGAAAAAAAACCTTGGCG+AGG | + | chr3.4:80145340-80145359 | None:intergenic | 35.0% | |
| ATTTGGAAGAATTGGACGAT+TGG | - | chr3.4:80144326-80144345 | MS.gene067034:intron | 35.0% | |
| CAGGTTATTAATGACCGATT+TGG | - | chr3.4:80145437-80145456 | MS.gene067034:intron | 35.0% | |
| GATTACGTTATTGAGTCAAC+TGG | - | chr3.4:80144777-80144796 | MS.gene067034:intron | 35.0% | |
| GTATTGAACGGTAAATTGAC+CGG | - | chr3.4:80145900-80145919 | MS.gene067034:intron | 35.0% | |
| GTCAATTTACCGTTCAATAC+TGG | + | chr3.4:80145900-80145919 | None:intergenic | 35.0% | |
| TTCAAGTATGACACTGTTCA+CGG | - | chr3.4:80144525-80144544 | MS.gene067034:intron | 35.0% | |
| TTCTTGGTATGACAACGAAT+GGG | - | chr3.4:80146361-80146380 | MS.gene067034:intron | 35.0% | |
| TTCTTTCTCACCAAAGAGAA+GGG | + | chr3.4:80144592-80144611 | None:intergenic | 35.0% | |
| TTGAAAAAAAACCTTGGCGA+GGG | + | chr3.4:80145339-80145358 | None:intergenic | 35.0% | |
| TTGGAAACAATGTTAAGCTC+TGG | + | chr3.4:80145287-80145306 | None:intergenic | 35.0% | |
| TTGGATTGTTGTGGTGATTA+GGG | - | chr3.4:80145179-80145198 | MS.gene067034:CDS | 35.0% | |
| TTTCTTGGTATGACAACGAA+TGG | - | chr3.4:80146360-80146379 | MS.gene067034:intron | 35.0% | |
| TTTGGATTGTTGTGGTGATT+AGG | - | chr3.4:80145178-80145197 | MS.gene067034:CDS | 35.0% | |
| ! | AAAGTGCTTCCAGTATTGAA+CGG | - | chr3.4:80145888-80145907 | MS.gene067034:intron | 35.0% |
| ! | ATTTGAAACATACAGGCTGT+AGG | - | chr3.4:80145864-80145883 | MS.gene067034:CDS | 35.0% |
| ! | CCCTTTTGTAGCATGTTTAT+TGG | - | chr3.4:80145361-80145380 | MS.gene067034:CDS | 35.0% |
| !! | GTGGTATCTACTGACTTTAT+TGG | - | chr3.4:80146167-80146186 | MS.gene067034:intron | 35.0% |
| !!! | GAGAAAGAAGTTGCTGTTTT+CGG | - | chr3.4:80144603-80144622 | MS.gene067034:intron | 35.0% |
| !!! | GTGGAAGCATTTTGAACTTA+AGG | - | chr3.4:80144551-80144570 | MS.gene067034:intron | 35.0% |
| AAACAACGAGATTCGAACTC+TGG | - | chr3.4:80144458-80144477 | MS.gene067034:CDS | 40.0% | |
| AAACATAGGTGCATCTTTGC+TGG | + | chr3.4:80145234-80145253 | None:intergenic | 40.0% | |
| AACATAGGTGCATCTTTGCT+GGG | + | chr3.4:80145233-80145252 | None:intergenic | 40.0% | |
| AAGATCAGGATCGGAATCAA+CGG | - | chr3.4:80144206-80144225 | MS.gene067034:intron | 40.0% | |
| ATTGTCTCACTCAGTAGAGT+CGG | + | chr3.4:80144917-80144936 | None:intergenic | 40.0% | |
| CAGTTGTTGACCTTACTGTA+AGG | - | chr3.4:80145955-80145974 | MS.gene067034:intron | 40.0% | |
| CTTCTTTCTCACCAAAGAGA+AGG | + | chr3.4:80144593-80144612 | None:intergenic | 40.0% | |
| GTCAACAACTGAAACATCGA+CGG | + | chr3.4:80145946-80145965 | None:intergenic | 40.0% | |
| GTTAGTAGTGCAACTAGCAT+TGG | + | chr3.4:80145306-80145325 | None:intergenic | 40.0% | |
| TAGCATCTGACAAGAAGATC+AGG | - | chr3.4:80144192-80144211 | MS.gene067034:intron | 40.0% | |
| TCTGAATAATAGGAACCCTG+AGG | - | chr3.4:80144728-80144747 | MS.gene067034:CDS | 40.0% | |
| TCTGACAAGAAGATCAGGAT+CGG | - | chr3.4:80144197-80144216 | MS.gene067034:intron | 40.0% | |
| TCTTCTCAAGCCTTACAGTA+AGG | + | chr3.4:80145968-80145987 | None:intergenic | 40.0% | |
| TCTTGGTATGACAACGAATG+GGG | - | chr3.4:80146362-80146381 | MS.gene067034:intron | 40.0% | |
| TGAAAAAAAACCTTGGCGAG+GGG | + | chr3.4:80145338-80145357 | None:intergenic | 40.0% | |
| TGAAATTGCAAAAACCAGGG+AGG | - | chr3.4:80146097-80146116 | MS.gene067034:CDS | 40.0% | |
| ! | AACTGGTGTTTTCACTGACA+AGG | - | chr3.4:80144794-80144813 | MS.gene067034:intron | 40.0% |
| !! | GATGCACCTATGTTTGTTGT+TGG | - | chr3.4:80145239-80145258 | MS.gene067034:intron | 40.0% |
| !! | TGTTGTTGGTGTTAACGAGA+AGG | - | chr3.4:80145253-80145272 | MS.gene067034:intron | 40.0% |
| AAAAACCAGGGAGGAATCAG+AGG | - | chr3.4:80146106-80146125 | MS.gene067034:CDS | 45.0% | |
| AAAACCAGGGAGGAATCAGA+GGG | - | chr3.4:80146107-80146126 | MS.gene067034:CDS | 45.0% | |
| ACAACTGAAACATCGACGGT+TGG | + | chr3.4:80145942-80145961 | None:intergenic | 45.0% | |
| ACCATCAACAGTCTTCTGAG+TGG | + | chr3.4:80145676-80145695 | None:intergenic | 45.0% | |
| ACTCAGTAGAGTCGGATACA+TGG | + | chr3.4:80144909-80144928 | None:intergenic | 45.0% | |
| AGCAACCTATGAGCAGATCA+AGG | - | chr3.4:80145989-80146008 | MS.gene067034:intron | 45.0% | |
| AGCATCTTTGATGCCAAAGC+TGG | - | chr3.4:80146305-80146324 | MS.gene067034:intron | 45.0% | |
| ATGACAACGAATGGGGTTAC+AGG | - | chr3.4:80146369-80146388 | MS.gene067034:intron | 45.0% | |
| CAACTGAAACATCGACGGTT+GGG | + | chr3.4:80145941-80145960 | None:intergenic | 45.0% | |
| CTGACTTTATTGGCGATAGC+AGG | - | chr3.4:80146177-80146196 | MS.gene067034:intron | 45.0% | |
| GACACTAAGACCCTTCTCTT+TGG | - | chr3.4:80144579-80144598 | MS.gene067034:intron | 45.0% | |
| GACCCTCAACGATTCCAAAT+CGG | + | chr3.4:80145454-80145473 | None:intergenic | 45.0% | |
| GATTGTCCACATTGCTTCTG+TGG | - | chr3.4:80146516-80146535 | MS.gene067034:intron | 45.0% | |
| GATTGTTGTGGTGATTAGGG+TGG | - | chr3.4:80145182-80145201 | MS.gene067034:CDS | 45.0% | |
| GGGTTACACTGAAGATGATG+TGG | - | chr3.4:80146148-80146167 | MS.gene067034:intron | 45.0% | |
| TTGGCGATAGCAGGTAATGT+TGG | - | chr3.4:80146186-80146205 | MS.gene067034:intron | 45.0% | |
| ! | TCTGAATCTCATGCCCCTTT+TGG | - | chr3.4:80144657-80144676 | MS.gene067034:CDS | 45.0% |
| !! | GACCGATTTGGAATCGTTGA+GGG | - | chr3.4:80145449-80145468 | MS.gene067034:intron | 45.0% |
| !! | TGACCGATTTGGAATCGTTG+AGG | - | chr3.4:80145448-80145467 | MS.gene067034:intron | 45.0% |
| !! | TGTTGATGGTCCATCAAGCA+AGG | - | chr3.4:80145686-80145705 | MS.gene067034:intron | 45.0% |
| !!! | AAGTTGCTGTTTTCGGAACC+AGG | - | chr3.4:80144610-80144629 | MS.gene067034:intron | 45.0% |
| !!! | GGCAAGCTGAAGGGTATTTT+GGG | - | chr3.4:80146128-80146147 | MS.gene067034:intron | 45.0% |
| AAACATCGACGGTTGGGACA+CGG | + | chr3.4:80145935-80145954 | None:intergenic | 50.0% | |
| AACATCATTCCCAGCAGCAC+TGG | - | chr3.4:80145738-80145757 | MS.gene067034:intron | 50.0% | |
| AACCCTGAGGAGATTCCATG+GGG | - | chr3.4:80144741-80144760 | MS.gene067034:CDS | 50.0% | |
| ATGACACTGTTCACGGTCAG+TGG | - | chr3.4:80144532-80144551 | MS.gene067034:intron | 50.0% | |
| ATGGTCCATCAAGCAAGGAC+TGG | - | chr3.4:80145691-80145710 | MS.gene067034:intron | 50.0% | |
| CAAAGCTGCTGCTCACTTGA+AGG | - | chr3.4:80144818-80144837 | MS.gene067034:intron | 50.0% | |
| GAACCCTGAGGAGATTCCAT+GGG | - | chr3.4:80144740-80144759 | MS.gene067034:CDS | 50.0% | |
| GAATCAGAGGGCAAGCTGAA+GGG | - | chr3.4:80146119-80146138 | MS.gene067034:intron | 50.0% | |
| GCCACTCAGAAGACTGTTGA+TGG | - | chr3.4:80145672-80145691 | MS.gene067034:intron | 50.0% | |
| GCTGCTGGGAATGATGTTGA+AGG | + | chr3.4:80145736-80145755 | None:intergenic | 50.0% | |
| TGGGACACGGAATGACATTC+CGG | + | chr3.4:80145922-80145941 | None:intergenic | 50.0% | |
| ! | TGATTAGGGTGGTGCCAAGA+AGG | - | chr3.4:80145193-80145212 | MS.gene067034:intron | 50.0% |
| !!! | GGGCAAGCTGAAGGGTATTT+TGG | - | chr3.4:80146127-80146146 | MS.gene067034:intron | 50.0% |
| ACCACAGTTCACGCCATCAC+AGG | - | chr3.4:80145479-80145498 | MS.gene067034:intron | 55.0% | |
| CACCCCATGGAATCTCCTCA+GGG | + | chr3.4:80144746-80144765 | None:intergenic | 55.0% | |
| CCATCAAGCAAGGACTGGAG+AGG | - | chr3.4:80145696-80145715 | MS.gene067034:intron | 55.0% | |
| CCTCTCCAGTCCTTGCTTGA+TGG | + | chr3.4:80145699-80145718 | None:intergenic | 55.0% | |
| GAGATTCCATGGGGTGAGGT+TGG | - | chr3.4:80144750-80144769 | MS.gene067034:intron | 55.0% | |
| GGAACCCTGAGGAGATTCCA+TGG | - | chr3.4:80144739-80144758 | MS.gene067034:CDS | 55.0% | |
| GGAATCAGAGGGCAAGCTGA+AGG | - | chr3.4:80146118-80146137 | MS.gene067034:intron | 55.0% | |
| GGCAGCCTTGATCTGCTCAT+AGG | + | chr3.4:80145997-80146016 | None:intergenic | 55.0% | |
| TCAAGCAAGGACTGGAGAGG+TGG | - | chr3.4:80145699-80145718 | MS.gene067034:intron | 55.0% | |
| TCACCCCATGGAATCTCCTC+AGG | + | chr3.4:80144747-80144766 | None:intergenic | 55.0% | |
| TGAGGAGATTCCATGGGGTG+AGG | - | chr3.4:80144746-80144765 | MS.gene067034:CDS | 55.0% | |
| ! | ACCTGTGATGGCGTGAACTG+TGG | + | chr3.4:80145483-80145502 | None:intergenic | 55.0% |
| AAACCTTGGCGAGGGGAGCA+AGG | + | chr3.4:80145331-80145350 | None:intergenic | 60.0% | |
| CTTGCCCTCTGATTCCTCCC+TGG | + | chr3.4:80146114-80146133 | None:intergenic | 60.0% | |
| TCAGCTCCAACCTCACCCCA+TGG | + | chr3.4:80144759-80144778 | None:intergenic | 60.0% | |
| ! | TTGGCAGCTCCAGTGCTGCT+GGG | + | chr3.4:80145750-80145769 | None:intergenic | 60.0% |
| CTTGGCAGCTCCAGTGCTGC+TGG | + | chr3.4:80145751-80145770 | None:intergenic | 65.0% | |
| ! | CAGCAGCACTGGAGCTGCCA+AGG | - | chr3.4:80145749-80145768 | MS.gene067034:intron | 65.0% |
| CTGCCTTGCTCCCCTCGCCA+AGG | - | chr3.4:80145325-80145344 | MS.gene067034:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 80144101 | 80146543 | 80144101 | ID=MS.gene067034 |
| chr3.4 | mRNA | 80144101 | 80146543 | 80144101 | ID=MS.gene067034.t1;Parent=MS.gene067034 |
| chr3.4 | exon | 80146540 | 80146543 | 80146540 | ID=MS.gene067034.t1.exon1;Parent=MS.gene067034.t1 |
| chr3.4 | CDS | 80146540 | 80146543 | 80146540 | ID=cds.MS.gene067034.t1;Parent=MS.gene067034.t1 |
| chr3.4 | exon | 80146417 | 80146449 | 80146417 | ID=MS.gene067034.t1.exon2;Parent=MS.gene067034.t1 |
| chr3.4 | CDS | 80146417 | 80146449 | 80146417 | ID=cds.MS.gene067034.t1;Parent=MS.gene067034.t1 |
| chr3.4 | exon | 80146219 | 80146319 | 80146219 | ID=MS.gene067034.t1.exon3;Parent=MS.gene067034.t1 |
| chr3.4 | CDS | 80146219 | 80146319 | 80146219 | ID=cds.MS.gene067034.t1;Parent=MS.gene067034.t1 |
| chr3.4 | exon | 80146013 | 80146128 | 80146013 | ID=MS.gene067034.t1.exon4;Parent=MS.gene067034.t1 |
| chr3.4 | CDS | 80146013 | 80146128 | 80146013 | ID=cds.MS.gene067034.t1;Parent=MS.gene067034.t1 |
| chr3.4 | exon | 80145805 | 80145904 | 80145805 | ID=MS.gene067034.t1.exon5;Parent=MS.gene067034.t1 |
| chr3.4 | CDS | 80145805 | 80145904 | 80145805 | ID=cds.MS.gene067034.t1;Parent=MS.gene067034.t1 |
| chr3.4 | exon | 80145298 | 80145444 | 80145298 | ID=MS.gene067034.t1.exon6;Parent=MS.gene067034.t1 |
| chr3.4 | CDS | 80145298 | 80145444 | 80145298 | ID=cds.MS.gene067034.t1;Parent=MS.gene067034.t1 |
| chr3.4 | exon | 80145144 | 80145204 | 80145144 | ID=MS.gene067034.t1.exon7;Parent=MS.gene067034.t1 |
| chr3.4 | CDS | 80145144 | 80145204 | 80145144 | ID=cds.MS.gene067034.t1;Parent=MS.gene067034.t1 |
| chr3.4 | exon | 80144874 | 80144971 | 80144874 | ID=MS.gene067034.t1.exon8;Parent=MS.gene067034.t1 |
| chr3.4 | CDS | 80144874 | 80144971 | 80144874 | ID=cds.MS.gene067034.t1;Parent=MS.gene067034.t1 |
| chr3.4 | exon | 80144623 | 80144765 | 80144623 | ID=MS.gene067034.t1.exon9;Parent=MS.gene067034.t1 |
| chr3.4 | CDS | 80144623 | 80144765 | 80144623 | ID=cds.MS.gene067034.t1;Parent=MS.gene067034.t1 |
| chr3.4 | exon | 80144446 | 80144529 | 80144446 | ID=MS.gene067034.t1.exon10;Parent=MS.gene067034.t1 |
| chr3.4 | CDS | 80144446 | 80144529 | 80144446 | ID=cds.MS.gene067034.t1;Parent=MS.gene067034.t1 |
| chr3.4 | exon | 80144254 | 80144343 | 80144254 | ID=MS.gene067034.t1.exon11;Parent=MS.gene067034.t1 |
| chr3.4 | CDS | 80144254 | 80144343 | 80144254 | ID=cds.MS.gene067034.t1;Parent=MS.gene067034.t1 |
| chr3.4 | exon | 80144101 | 80144146 | 80144101 | ID=MS.gene067034.t1.exon12;Parent=MS.gene067034.t1 |
| chr3.4 | CDS | 80144101 | 80144146 | 80144101 | ID=cds.MS.gene067034.t1;Parent=MS.gene067034.t1 |
| Gene Sequence |
| Protein sequence |
