Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79129.t1 | XP_003601828.1 | 99.7 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 2.20E-189 | 671.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79129.t1 | P04796 | 90.1 | 335 | 33 | 0 | 3 | 337 | 2 | 336 | 1.0e-174 | 614.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79129.t1 | G7J2H2 | 99.7 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 1.6e-189 | 671.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051433 | MS.gene79129 | 0.817681 | 2.91E-52 | -1.69E-46 |
| MS.gene051963 | MS.gene79129 | 0.804966 | 1.68E-49 | -1.69E-46 |
| MS.gene052494 | MS.gene79129 | 0.824937 | 6.16E-54 | -1.69E-46 |
| MS.gene053097 | MS.gene79129 | 0.839642 | 1.40E-57 | -1.69E-46 |
| MS.gene053421 | MS.gene79129 | 0.809601 | 1.75E-50 | -1.69E-46 |
| MS.gene056040 | MS.gene79129 | -0.801079 | 1.07E-48 | -1.69E-46 |
| MS.gene056647 | MS.gene79129 | 0.815282 | 1.00E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene79129 | -0.825245 | 5.21E-54 | -1.69E-46 |
| MS.gene058170 | MS.gene79129 | 0.828448 | 8.94E-55 | -1.69E-46 |
| MS.gene058171 | MS.gene79129 | 0.823022 | 1.73E-53 | -1.69E-46 |
| MS.gene058172 | MS.gene79129 | 0.842414 | 2.62E-58 | -1.69E-46 |
| MS.gene058173 | MS.gene79129 | 0.818958 | 1.49E-52 | -1.69E-46 |
| MS.gene058174 | MS.gene79129 | 0.832595 | 8.64E-56 | -1.69E-46 |
| MS.gene058175 | MS.gene79129 | 0.822959 | 1.79E-53 | -1.69E-46 |
| MS.gene059480 | MS.gene79129 | 0.800232 | 1.59E-48 | -1.69E-46 |
| MS.gene059545 | MS.gene79129 | 0.821295 | 4.36E-53 | -1.69E-46 |
| MS.gene060187 | MS.gene79129 | 0.819339 | 1.22E-52 | -1.69E-46 |
| MS.gene06077 | MS.gene79129 | -0.807387 | 5.18E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06683 | MS.gene79129 | PPI |
| MS.gene057128 | MS.gene79129 | PPI |
| MS.gene51927 | MS.gene79129 | PPI |
| MS.gene52287 | MS.gene79129 | PPI |
| MS.gene72216 | MS.gene79129 | PPI |
| MS.gene013566 | MS.gene79129 | PPI |
| MS.gene024334 | MS.gene79129 | PPI |
| MS.gene06894 | MS.gene79129 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79129.t1 | MTR_3g085850 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 691 |
| MS.gene79129.t1 | MTR_4g103920 | 90.060 | 332 | 33 | 0 | 6 | 337 | 5 | 336 | 0.0 | 621 |
| MS.gene79129.t1 | MTR_3g085850 | 99.661 | 295 | 1 | 0 | 46 | 340 | 1 | 295 | 0.0 | 600 |
| MS.gene79129.t1 | MTR_6g022630 | 86.250 | 320 | 44 | 0 | 6 | 325 | 3 | 322 | 0.0 | 577 |
| MS.gene79129.t1 | MTR_2g065470 | 72.781 | 338 | 91 | 1 | 2 | 339 | 78 | 414 | 0.0 | 509 |
| MS.gene79129.t1 | MTR_2g065470 | 72.781 | 338 | 91 | 1 | 2 | 339 | 19 | 355 | 0.0 | 506 |
| MS.gene79129.t1 | MTR_4g103920 | 88.973 | 263 | 29 | 0 | 6 | 268 | 5 | 267 | 5.17e-176 | 489 |
| MS.gene79129.t1 | MTR_2g065470 | 73.457 | 324 | 85 | 1 | 2 | 325 | 78 | 400 | 1.16e-175 | 493 |
| MS.gene79129.t1 | MTR_8g046560 | 76.378 | 254 | 46 | 4 | 84 | 325 | 7 | 258 | 1.75e-126 | 372 |
| MS.gene79129.t1 | MTR_3g115920 | 47.447 | 333 | 166 | 7 | 6 | 332 | 85 | 414 | 4.56e-88 | 272 |
| MS.gene79129.t1 | MTR_7g084800 | 46.687 | 332 | 171 | 5 | 4 | 332 | 67 | 395 | 1.78e-85 | 264 |
| MS.gene79129.t1 | MTR_3g115920 | 46.933 | 326 | 164 | 7 | 6 | 325 | 85 | 407 | 8.77e-85 | 262 |
| MS.gene79129.t1 | MTR_3g115920 | 49.286 | 280 | 137 | 4 | 63 | 338 | 8 | 286 | 1.42e-77 | 240 |
| MS.gene79129.t1 | MTR_8g464820 | 83.108 | 148 | 16 | 2 | 180 | 327 | 1 | 139 | 7.70e-77 | 240 |
| MS.gene79129.t1 | MTR_1680s0010 | 45.000 | 140 | 72 | 2 | 180 | 315 | 1 | 139 | 3.43e-30 | 119 |
| MS.gene79129.t1 | MTR_2g078600 | 80.952 | 63 | 12 | 0 | 220 | 282 | 84 | 146 | 9.79e-26 | 100 |
| MS.gene79129.t1 | MTR_0776s0010 | 37.500 | 128 | 74 | 3 | 4 | 128 | 1786 | 1910 | 5.26e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79129.t1 | AT1G13440 | 89.552 | 335 | 35 | 0 | 3 | 337 | 2 | 336 | 0.0 | 626 |
| MS.gene79129.t1 | AT3G04120 | 89.552 | 335 | 35 | 0 | 3 | 337 | 2 | 336 | 0.0 | 626 |
| MS.gene79129.t1 | AT1G13440 | 82.090 | 335 | 32 | 1 | 3 | 337 | 2 | 308 | 0.0 | 556 |
| MS.gene79129.t1 | AT1G79530 | 72.271 | 339 | 93 | 1 | 2 | 340 | 82 | 419 | 0.0 | 511 |
| MS.gene79129.t1 | AT1G16300 | 71.893 | 338 | 94 | 1 | 3 | 340 | 81 | 417 | 1.47e-180 | 506 |
| MS.gene79129.t1 | AT1G42970 | 47.493 | 339 | 169 | 7 | 6 | 338 | 81 | 416 | 9.08e-95 | 289 |
| MS.gene79129.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 12 | 341 | 3.13e-90 | 274 |
| MS.gene79129.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 12 | 341 | 3.13e-90 | 274 |
| MS.gene79129.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 61 | 390 | 7.45e-90 | 275 |
| MS.gene79129.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 103 | 432 | 1.69e-89 | 275 |
| MS.gene79129.t1 | AT3G26650 | 46.246 | 333 | 173 | 5 | 3 | 332 | 58 | 387 | 2.23e-86 | 266 |
| MS.gene79129.t1 | AT1G12900 | 49.814 | 269 | 132 | 3 | 66 | 332 | 41 | 308 | 8.88e-74 | 231 |
Find 85 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCAAGCTGAAGGGTATTT+TGG | 0.162108 | 3.1:-68655723 | MS.gene79129:CDS |
| CCTCTCCAGTCCTTGCTTGA+TGG | 0.259153 | 3.1:+68656154 | None:intergenic |
| ACTTTGTGAAACTCGTTTCT+TGG | 0.270714 | 3.1:-68655505 | MS.gene79129:CDS |
| GTCAATTTACCGTTCAATAC+TGG | 0.280860 | 3.1:+68655953 | None:intergenic |
| CAGGTTATTAATGACCGATT+TGG | 0.281961 | 3.1:-68656413 | MS.gene79129:CDS |
| CTTGGCAGCTCCAGTGCTGC+TGG | 0.294421 | 3.1:+68656102 | None:intergenic |
| AAAACAGGATTTGGAAGAAT+TGG | 0.309904 | 3.1:-68657515 | MS.gene79129:intron |
| GACACTAAGACCCTTCTCTT+TGG | 0.356905 | 3.1:-68657254 | MS.gene79129:CDS |
| AAACATAGGTGCATCTTTGC+TGG | 0.359553 | 3.1:+68656619 | None:intergenic |
| ATTCAAAGCAATTCCAGCTT+TGG | 0.384329 | 3.1:+68655532 | None:intergenic |
| ATGACAACGAATGGGGTTAC+AGG | 0.389525 | 3.1:-68655481 | MS.gene79129:intron |
| GTGGTATCTACTGACTTTAT+TGG | 0.395775 | 3.1:-68655683 | MS.gene79129:CDS |
| TCACCCCATGGAATCTCCTC+AGG | 0.421872 | 3.1:+68657091 | None:intergenic |
| GCCACTCAGAAGACTGTTGA+TGG | 0.424666 | 3.1:-68656178 | MS.gene79129:CDS |
| AGCAGAAATAACAACCTTCT+TGG | 0.437227 | 3.1:+68656643 | None:intergenic |
| CAAAGCTGCTGCTCACTTGA+AGG | 0.450187 | 3.1:-68657017 | MS.gene79129:intron |
| CAGTTGTTGACCTTACTGTA+AGG | 0.450759 | 3.1:-68655895 | MS.gene79129:CDS |
| AGCATCTTTGATGCCAAAGC+TGG | 0.451793 | 3.1:-68655545 | MS.gene79129:CDS |
| GATTGTCCACATTGCTTCTG+TGG | 0.453352 | 3.1:-68655340 | MS.gene79129:CDS |
| GACCGATTTGGAATCGTTGA+GGG | 0.456120 | 3.1:-68656401 | MS.gene79129:CDS |
| TTGGAAACAATGTTAAGCTC+TGG | 0.470905 | 3.1:+68656566 | None:intergenic |
| TTCTTGGTATGACAACGAAT+GGG | 0.472520 | 3.1:-68655489 | MS.gene79129:CDS |
| TCTTCTCAAGCCTTACAGTA+AGG | 0.474802 | 3.1:+68655885 | None:intergenic |
| AACATCATTCCCAGCAGCAC+TGG | 0.480002 | 3.1:-68656112 | MS.gene79129:CDS |
| GATGCACCTATGTTTGTTGT+TGG | 0.480077 | 3.1:-68656611 | MS.gene79129:CDS |
| TGGGACACGGAATGACATTC+CGG | 0.489853 | 3.1:+68655931 | None:intergenic |
| TTCAAGTATGACACTGTTCA+CGG | 0.491509 | 3.1:-68657308 | MS.gene79129:CDS |
| ATTTGGAAGAATTGGACGAT+TGG | 0.494519 | 3.1:-68657507 | MS.gene79129:CDS |
| TAGCATCTGACAAGAAGATC+AGG | 0.494730 | 3.1:-68657641 | MS.gene79129:CDS |
| GATTACGTTATTGAGTCAAC+TGG | 0.498321 | 3.1:-68657058 | MS.gene79129:CDS |
| GAGATTCCATGGGGTGAGGT+TGG | 0.499881 | 3.1:-68657085 | MS.gene79129:CDS |
| GACCCTCAACGATTCCAAAT+CGG | 0.501135 | 3.1:+68656399 | None:intergenic |
| CTGACTTTATTGGCGATAGC+AGG | 0.501827 | 3.1:-68655673 | MS.gene79129:intron |
| TTTCTTGGTATGACAACGAA+TGG | 0.505583 | 3.1:-68655490 | MS.gene79129:CDS |
| GGAATCAGAGGGCAAGCTGA+AGG | 0.509794 | 3.1:-68655732 | MS.gene79129:CDS |
| GATAAATAAACAACCTGTGA+TGG | 0.511375 | 3.1:+68656358 | None:intergenic |
| CAACTGAAACATCGACGGTT+GGG | 0.515252 | 3.1:+68655912 | None:intergenic |
| TTTCATCACTACTGATTACA+TGG | 0.515255 | 3.1:-68657429 | MS.gene79129:intron |
| CAGCAGCACTGGAGCTGCCA+AGG | 0.520669 | 3.1:-68656101 | MS.gene79129:intron |
| GGCAGCCTTGATCTGCTCAT+AGG | 0.524781 | 3.1:+68655856 | None:intergenic |
| TTGGCAGCTCCAGTGCTGCT+GGG | 0.526344 | 3.1:+68656103 | None:intergenic |
| AAACATCGACGGTTGGGACA+CGG | 0.531370 | 3.1:+68655918 | None:intergenic |
| CTTCTTTCTCACCAAAGAGA+AGG | 0.533597 | 3.1:+68657243 | None:intergenic |
| TTCTTTCTCACCAAAGAGAA+GGG | 0.538245 | 3.1:+68657244 | None:intergenic |
| ACAACTGAAACATCGACGGT+TGG | 0.545734 | 3.1:+68655911 | None:intergenic |
| GTTAGTAGTGCAACTAGCAT+TGG | 0.551894 | 3.1:+68656547 | None:intergenic |
| AACATAGGTGCATCTTTGCT+GGG | 0.553014 | 3.1:+68656620 | None:intergenic |
| ATGGTCCATCAAGCAAGGAC+TGG | 0.555599 | 3.1:-68656159 | MS.gene79129:CDS |
| CTGCCTTGCTCCCCTCGCCA+AGG | 0.563779 | 3.1:-68656525 | MS.gene79129:intron |
| ATGACACTGTTCACGGTCAG+TGG | 0.566865 | 3.1:-68657301 | MS.gene79129:CDS |
| AGCAACCTATGAGCAGATCA+AGG | 0.567372 | 3.1:-68655861 | MS.gene79129:CDS |
| AAACCTTGGCGAGGGGAGCA+AGG | 0.568255 | 3.1:+68656522 | None:intergenic |
| GGAACCCTGAGGAGATTCCA+TGG | 0.575104 | 3.1:-68657096 | MS.gene79129:CDS |
| TTAACACCAACAACAAACAT+AGG | 0.578256 | 3.1:+68656605 | None:intergenic |
| TGAGGAGATTCCATGGGGTG+AGG | 0.584999 | 3.1:-68657089 | MS.gene79129:CDS |
| TGACCGATTTGGAATCGTTG+AGG | 0.585725 | 3.1:-68656402 | MS.gene79129:CDS |
| ATTTGAAACATACAGGCTGT+AGG | 0.586694 | 3.1:-68655986 | MS.gene79129:intron |
| GAACCCTGAGGAGATTCCAT+GGG | 0.589804 | 3.1:-68657095 | MS.gene79129:CDS |
| TCAAGCAAGGACTGGAGAGG+TGG | 0.590129 | 3.1:-68656151 | MS.gene79129:CDS |
| GTATTGAACGGTAAATTGAC+CGG | 0.592350 | 3.1:-68655950 | MS.gene79129:CDS |
| ACCACAGTTCACGCCATCAC+AGG | 0.598843 | 3.1:-68656371 | MS.gene79129:intron |
| AAGATCAGGATCGGAATCAA+CGG | 0.599281 | 3.1:-68657627 | MS.gene79129:intron |
| TGATTAGGGTGGTGCCAAGA+AGG | 0.600438 | 3.1:-68656657 | MS.gene79129:intron |
| CACCCCATGGAATCTCCTCA+GGG | 0.600637 | 3.1:+68657092 | None:intergenic |
| GCTGCTGGGAATGATGTTGA+AGG | 0.601432 | 3.1:+68656117 | None:intergenic |
| TCAGCTCCAACCTCACCCCA+TGG | 0.603751 | 3.1:+68657079 | None:intergenic |
| TGTTGTTGGTGTTAACGAGA+AGG | 0.604083 | 3.1:-68656597 | MS.gene79129:CDS |
| GAATCAGAGGGCAAGCTGAA+GGG | 0.606362 | 3.1:-68655731 | MS.gene79129:CDS |
| GACAATCAAATCAATAACAC+GGG | 0.607012 | 3.1:+68655356 | None:intergenic |
| AGTGTCATACTTGAACATAT+AGG | 0.610966 | 3.1:+68657316 | None:intergenic |
| ATGTAATCAGTAGTGATGAA+AGG | 0.611234 | 3.1:+68657431 | None:intergenic |
| TCTTGGTATGACAACGAATG+GGG | 0.619721 | 3.1:-68655488 | MS.gene79129:CDS |
| GGGTTACACTGAAGATGATG+TGG | 0.627513 | 3.1:-68655702 | MS.gene79129:CDS |
| TCTGACAAGAAGATCAGGAT+CGG | 0.628839 | 3.1:-68657636 | MS.gene79129:CDS |
| TGTTGATGGTCCATCAAGCA+AGG | 0.632457 | 3.1:-68656164 | MS.gene79129:CDS |
| GTCAACAACTGAAACATCGA+CGG | 0.646627 | 3.1:+68655907 | None:intergenic |
| CCATCAAGCAAGGACTGGAG+AGG | 0.655042 | 3.1:-68656154 | MS.gene79129:CDS |
| GGACAATCAAATCAATAACA+CGG | 0.656794 | 3.1:+68655355 | None:intergenic |
| AAAACCAGGGAGGAATCAGA+GGG | 0.660427 | 3.1:-68655743 | MS.gene79129:intron |
| ACCTGTGATGGCGTGAACTG+TGG | 0.667657 | 3.1:+68656370 | None:intergenic |
| AAAGTGCTTCCAGTATTGAA+CGG | 0.668457 | 3.1:-68655962 | MS.gene79129:CDS |
| ATCAAGCCACAGAAGCAATG+TGG | 0.677587 | 3.1:+68655334 | None:intergenic |
| AACCCTGAGGAGATTCCATG+GGG | 0.716862 | 3.1:-68657094 | MS.gene79129:CDS |
| ACCATCAACAGTCTTCTGAG+TGG | 0.726815 | 3.1:+68656177 | None:intergenic |
| TCTGAATAATAGGAACCCTG+AGG | 0.747270 | 3.1:-68657107 | MS.gene79129:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGAAATTTATGTAATT+TGG | - | chr3.1:68656391-68656410 | MS.gene79129:CDS | 10.0% |
| !! | AAATTTGTCAAATTATTACA+TGG | - | chr3.1:68657019-68657038 | MS.gene79129:CDS | 15.0% |
| !! | TATCAAAATCTAATTAATTG+TGG | + | chr3.1:68656369-68656388 | None:intergenic | 15.0% |
| !!! | TGTTTGATTAATTTTGTAAT+CGG | + | chr3.1:68655691-68655710 | None:intergenic | 15.0% |
| !!! | TTTTAAATTATTAGCTTCAT+TGG | - | chr3.1:68656619-68656638 | MS.gene79129:CDS | 15.0% |
| !! | AATTAATTACAACATCCAAA+AGG | + | chr3.1:68655923-68655942 | None:intergenic | 20.0% |
| !! | ATTAATTACAACATCCAAAA+GGG | + | chr3.1:68655922-68655941 | None:intergenic | 20.0% |
| !! | TAAACGAGAAATAGATTAAA+CGG | + | chr3.1:68655392-68655411 | None:intergenic | 20.0% |
| !!! | AACTGTTTTAACTTTAAAAC+AGG | - | chr3.1:68655551-68655570 | MS.gene79129:CDS | 20.0% |
| !!! | ATATTGAATTTGAAACATAC+AGG | - | chr3.1:68657088-68657107 | MS.gene79129:CDS | 20.0% |
| !!! | ATTATTTGATAGAGCATTTT+GGG | - | chr3.1:68656119-68656138 | MS.gene79129:CDS | 20.0% |
| !!! | TAATTTATGATCTGTGATTT+TGG | - | chr3.1:68655881-68655900 | MS.gene79129:CDS | 20.0% |
| !!! | TATTAATTTTTACTCTTTGC+AGG | - | chr3.1:68656649-68656668 | MS.gene79129:CDS | 20.0% |
| !!! | TATTATTTGATAGAGCATTT+TGG | - | chr3.1:68656118-68656137 | MS.gene79129:CDS | 20.0% |
| !!! | TTTAACTTTAAAACAGGATT+TGG | - | chr3.1:68655557-68655576 | MS.gene79129:intron | 20.0% |
| !!! | TTTTGCAATTTCAACAAAAT+AGG | + | chr3.1:68657321-68657340 | None:intergenic | 20.0% |
| ! | AAAATAGGTTTATGTTAGGA+GGG | + | chr3.1:68657306-68657325 | None:intergenic | 25.0% |
| ! | AAGTTTAACACTTTACTTGA+TGG | + | chr3.1:68657249-68657268 | None:intergenic | 25.0% |
| ! | ATCACAATATGACATTGAAT+TGG | - | chr3.1:68657639-68657658 | MS.gene79129:CDS | 25.0% |
| ! | CAAATTATTACATGGTTGAA+TGG | - | chr3.1:68657027-68657046 | MS.gene79129:CDS | 25.0% |
| ! | CAACAAAATAGGTTTATGTT+AGG | + | chr3.1:68657310-68657329 | None:intergenic | 25.0% |
| ! | TGATTAACTGATTGATTGTT+TGG | - | chr3.1:68656868-68656887 | MS.gene79129:intron | 25.0% |
| ! | TTAAGAGAGAAAAAGGAAAA+AGG | + | chr3.1:68655366-68655385 | None:intergenic | 25.0% |
| ! | TTATGTAATTTGGATTGTTG+TGG | - | chr3.1:68656401-68656420 | MS.gene79129:CDS | 25.0% |
| !! | AAACTGTCATGATAAGTTTT+TGG | - | chr3.1:68657462-68657481 | MS.gene79129:CDS | 25.0% |
| !! | GATGAACACTATGTATATTT+TGG | + | chr3.1:68657669-68657688 | None:intergenic | 25.0% |
| !! | TTTATCATTATAGAGTACCT+TGG | + | chr3.1:68657000-68657019 | None:intergenic | 25.0% |
| !!! | TGAACTTTATTTTCATTTGC+AGG | - | chr3.1:68657510-68657529 | MS.gene79129:CDS | 25.0% |
| !!! | TTATTTGATAGAGCATTTTG+GGG | - | chr3.1:68656120-68656139 | MS.gene79129:CDS | 25.0% |
| AAAACAGGATTTGGAAGAAT+TGG | - | chr3.1:68655566-68655585 | MS.gene79129:intron | 30.0% | |
| AATGTCATATTGTGATAGCA+AGG | + | chr3.1:68657635-68657654 | None:intergenic | 30.0% | |
| ACCAATAAACATGCTACAAA+AGG | + | chr3.1:68656596-68656615 | None:intergenic | 30.0% | |
| AGTGTCATACTTGAACATAT+AGG | + | chr3.1:68655768-68655787 | None:intergenic | 30.0% | |
| ATCACAGATCATAAATTACC+TGG | + | chr3.1:68655879-68655898 | None:intergenic | 30.0% | |
| ATGTAATCAGTAGTGATGAA+AGG | + | chr3.1:68655653-68655672 | None:intergenic | 30.0% | |
| CAAAATAGGTTTATGTTAGG+AGG | + | chr3.1:68657307-68657326 | None:intergenic | 30.0% | |
| CCAATAAACATGCTACAAAA+GGG | + | chr3.1:68656595-68656614 | None:intergenic | 30.0% | |
| GACAATCAAATCAATAACAC+GGG | + | chr3.1:68657728-68657747 | None:intergenic | 30.0% | |
| GATAAATAAACAACCTGTGA+TGG | + | chr3.1:68656726-68656745 | None:intergenic | 30.0% | |
| GGACAATCAAATCAATAACA+CGG | + | chr3.1:68657729-68657748 | None:intergenic | 30.0% | |
| GGAGGGAAAAATTATTCAAT+TGG | + | chr3.1:68657289-68657308 | None:intergenic | 30.0% | |
| TCTGATTGCATCTGAATAAT+AGG | - | chr3.1:68655964-68655983 | MS.gene79129:CDS | 30.0% | |
| TGTATCGAATCATTCAAACA+GGG | + | chr3.1:68656316-68656335 | None:intergenic | 30.0% | |
| TGTTGAAATTGCAAAAACCA+GGG | - | chr3.1:68657325-68657344 | MS.gene79129:intron | 30.0% | |
| TTAACACCAACAACAAACAT+AGG | + | chr3.1:68656479-68656498 | None:intergenic | 30.0% | |
| TTGTTGAAATTGCAAAAACC+AGG | - | chr3.1:68657324-68657343 | MS.gene79129:intron | 30.0% | |
| ! | GCATTTTGAACTTAAGGTTA+AGG | - | chr3.1:68655805-68655824 | MS.gene79129:intron | 30.0% |
| ! | TTTCATCACTACTGATTACA+TGG | - | chr3.1:68655652-68655671 | MS.gene79129:intron | 30.0% |
| !! | AGGGTATTGAAAAAAAACCT+TGG | + | chr3.1:68656576-68656595 | None:intergenic | 30.0% |
| ACGGTGATTAAGAGAGAAAA+AGG | + | chr3.1:68655373-68655392 | None:intergenic | 35.0% | |
| ACTTTGTGAAACTCGTTTCT+TGG | - | chr3.1:68657576-68657595 | MS.gene79129:intron | 35.0% | |
| AGCAGAAATAACAACCTTCT+TGG | + | chr3.1:68656441-68656460 | None:intergenic | 35.0% | |
| ATTCAAAGCAATTCCAGCTT+TGG | + | chr3.1:68657552-68657571 | None:intergenic | 35.0% | |
| ATTGAAAAAAAACCTTGGCG+AGG | + | chr3.1:68656571-68656590 | None:intergenic | 35.0% | |
| ATTTGGAAGAATTGGACGAT+TGG | - | chr3.1:68655574-68655593 | MS.gene79129:intron | 35.0% | |
| CAGGTTATTAATGACCGATT+TGG | - | chr3.1:68656668-68656687 | MS.gene79129:intron | 35.0% | |
| CTGTATCGAATCATTCAAAC+AGG | + | chr3.1:68656317-68656336 | None:intergenic | 35.0% | |
| GATTACGTTATTGAGTCAAC+TGG | - | chr3.1:68656023-68656042 | MS.gene79129:intron | 35.0% | |
| GTATTGAACGGTAAATTGAC+CGG | - | chr3.1:68657131-68657150 | MS.gene79129:intron | 35.0% | |
| GTCAATTTACCGTTCAATAC+TGG | + | chr3.1:68657131-68657150 | None:intergenic | 35.0% | |
| TTCAAGTATGACACTGTTCA+CGG | - | chr3.1:68655773-68655792 | MS.gene79129:intron | 35.0% | |
| TTCTTGGTATGACAACGAAT+GGG | - | chr3.1:68657592-68657611 | MS.gene79129:intron | 35.0% | |
| TTCTTTCTCACCAAAGAGAA+GGG | + | chr3.1:68655840-68655859 | None:intergenic | 35.0% | |
| TTGAAAAAAAACCTTGGCGA+GGG | + | chr3.1:68656570-68656589 | None:intergenic | 35.0% | |
| TTGGAAACAATGTTAAGCTC+TGG | + | chr3.1:68656518-68656537 | None:intergenic | 35.0% | |
| TTGGATTGTTGTGGTGATTA+GGG | - | chr3.1:68656410-68656429 | MS.gene79129:CDS | 35.0% | |
| TTTCTTGGTATGACAACGAA+TGG | - | chr3.1:68657591-68657610 | MS.gene79129:intron | 35.0% | |
| TTTGGATTGTTGTGGTGATT+AGG | - | chr3.1:68656409-68656428 | MS.gene79129:CDS | 35.0% | |
| ! | AAAGTGCTTCCAGTATTGAA+CGG | - | chr3.1:68657119-68657138 | MS.gene79129:intron | 35.0% |
| ! | ATTTGAAACATACAGGCTGT+AGG | - | chr3.1:68657095-68657114 | MS.gene79129:CDS | 35.0% |
| ! | CCCTTTTGTAGCATGTTTAT+TGG | - | chr3.1:68656592-68656611 | MS.gene79129:CDS | 35.0% |
| !! | GTGGTATCTACTGACTTTAT+TGG | - | chr3.1:68657398-68657417 | MS.gene79129:intron | 35.0% |
| !!! | GAGAAAGAAGTTGCTGTTTT+CGG | - | chr3.1:68655851-68655870 | MS.gene79129:CDS | 35.0% |
| !!! | GTGGAAGCATTTTGAACTTA+AGG | - | chr3.1:68655799-68655818 | MS.gene79129:intron | 35.0% |
| AAACAACGAGATTCGAACTC+TGG | - | chr3.1:68655706-68655725 | MS.gene79129:CDS | 40.0% | |
| AAACATAGGTGCATCTTTGC+TGG | + | chr3.1:68656465-68656484 | None:intergenic | 40.0% | |
| AACATAGGTGCATCTTTGCT+GGG | + | chr3.1:68656464-68656483 | None:intergenic | 40.0% | |
| AAGATCAGGATCGGAATCAA+CGG | - | chr3.1:68655454-68655473 | MS.gene79129:intron | 40.0% | |
| ATTGTCTCACTCAGTAGAGT+CGG | + | chr3.1:68656163-68656182 | None:intergenic | 40.0% | |
| CAGTTGTTGACCTTACTGTA+AGG | - | chr3.1:68657186-68657205 | MS.gene79129:intron | 40.0% | |
| CTTCTTTCTCACCAAAGAGA+AGG | + | chr3.1:68655841-68655860 | None:intergenic | 40.0% | |
| GTCAACAACTGAAACATCGA+CGG | + | chr3.1:68657177-68657196 | None:intergenic | 40.0% | |
| GTTAGTAGTGCAACTAGCAT+TGG | + | chr3.1:68656537-68656556 | None:intergenic | 40.0% | |
| TAGCATCTGACAAGAAGATC+AGG | - | chr3.1:68655440-68655459 | MS.gene79129:intron | 40.0% | |
| TCTGAATAATAGGAACCCTG+AGG | - | chr3.1:68655974-68655993 | MS.gene79129:CDS | 40.0% | |
| TCTGACAAGAAGATCAGGAT+CGG | - | chr3.1:68655445-68655464 | MS.gene79129:intron | 40.0% | |
| TCTTCTCAAGCCTTACAGTA+AGG | + | chr3.1:68657199-68657218 | None:intergenic | 40.0% | |
| TCTTGGTATGACAACGAATG+GGG | - | chr3.1:68657593-68657612 | MS.gene79129:intron | 40.0% | |
| TGAAAAAAAACCTTGGCGAG+GGG | + | chr3.1:68656569-68656588 | None:intergenic | 40.0% | |
| TGAAATTGCAAAAACCAGGG+AGG | - | chr3.1:68657328-68657347 | MS.gene79129:intron | 40.0% | |
| ! | AACTGGTGTTTTCACTGACA+AGG | - | chr3.1:68656040-68656059 | MS.gene79129:intron | 40.0% |
| ! | TCTGAATCTCATGTCCCTTT+TGG | - | chr3.1:68655905-68655924 | MS.gene79129:CDS | 40.0% |
| !! | GATGCACCTATGTTTGTTGT+TGG | - | chr3.1:68656470-68656489 | MS.gene79129:intron | 40.0% |
| !! | TGTTGTTGGTGTTAACGAGA+AGG | - | chr3.1:68656484-68656503 | MS.gene79129:intron | 40.0% |
| AAAAACCAGGGAGGAATCAG+AGG | - | chr3.1:68657337-68657356 | MS.gene79129:intron | 45.0% | |
| AAAACCAGGGAGGAATCAGA+GGG | - | chr3.1:68657338-68657357 | MS.gene79129:intron | 45.0% | |
| ACAACTGAAACATCGACGGT+TGG | + | chr3.1:68657173-68657192 | None:intergenic | 45.0% | |
| ACCATCAACAGTCTTCTGAG+TGG | + | chr3.1:68656907-68656926 | None:intergenic | 45.0% | |
| ACTCAGTAGAGTCGGATACA+TGG | + | chr3.1:68656155-68656174 | None:intergenic | 45.0% | |
| AGCAACCTATGAGCAGATCA+AGG | - | chr3.1:68657220-68657239 | MS.gene79129:intron | 45.0% | |
| AGCATCTTTGATGCCAAAGC+TGG | - | chr3.1:68657536-68657555 | MS.gene79129:intron | 45.0% | |
| ATGACAACGAATGGGGTTAC+AGG | - | chr3.1:68657600-68657619 | MS.gene79129:intron | 45.0% | |
| CAACTGAAACATCGACGGTT+GGG | + | chr3.1:68657172-68657191 | None:intergenic | 45.0% | |
| CTGACTTTATTGGCGATAGC+AGG | - | chr3.1:68657408-68657427 | MS.gene79129:intron | 45.0% | |
| GACACTAAGACCCTTCTCTT+TGG | - | chr3.1:68655827-68655846 | MS.gene79129:intron | 45.0% | |
| GACCCTCAACGATTCCAAAT+CGG | + | chr3.1:68656685-68656704 | None:intergenic | 45.0% | |
| GATTGTCCACATTGCTTCTG+TGG | - | chr3.1:68657741-68657760 | MS.gene79129:intron | 45.0% | |
| GATTGTTGTGGTGATTAGGG+TGG | - | chr3.1:68656413-68656432 | MS.gene79129:CDS | 45.0% | |
| GGGTTACACTGAAGATGATG+TGG | - | chr3.1:68657379-68657398 | MS.gene79129:intron | 45.0% | |
| TTGGCGATAGCAGGTAATGT+TGG | - | chr3.1:68657417-68657436 | MS.gene79129:intron | 45.0% | |
| !! | GACCGATTTGGAATCGTTGA+GGG | - | chr3.1:68656680-68656699 | MS.gene79129:intron | 45.0% |
| !! | TGACCGATTTGGAATCGTTG+AGG | - | chr3.1:68656679-68656698 | MS.gene79129:intron | 45.0% |
| !! | TGTTGATGGTCCATCAAGCA+AGG | - | chr3.1:68656917-68656936 | MS.gene79129:intron | 45.0% |
| !!! | AAGTTGCTGTTTTCGGAACC+AGG | - | chr3.1:68655858-68655877 | MS.gene79129:CDS | 45.0% |
| !!! | GGCAAGCTGAAGGGTATTTT+GGG | - | chr3.1:68657359-68657378 | MS.gene79129:intron | 45.0% |
| AAACATCGACGGTTGGGACA+CGG | + | chr3.1:68657166-68657185 | None:intergenic | 50.0% | |
| AACATCATTCCCAGCAGCAC+TGG | - | chr3.1:68656969-68656988 | MS.gene79129:intron | 50.0% | |
| AACCCTGAGGAGATTCCATG+GGG | - | chr3.1:68655987-68656006 | MS.gene79129:intron | 50.0% | |
| ATGACACTGTTCACGGTCAG+TGG | - | chr3.1:68655780-68655799 | MS.gene79129:intron | 50.0% | |
| ATGGTCCATCAAGCAAGGAC+TGG | - | chr3.1:68656922-68656941 | MS.gene79129:intron | 50.0% | |
| CAAAGCTGCTGCTCACTTGA+AGG | - | chr3.1:68656064-68656083 | MS.gene79129:intron | 50.0% | |
| GAACCCTGAGGAGATTCCAT+GGG | - | chr3.1:68655986-68656005 | MS.gene79129:intron | 50.0% | |
| GAATCAGAGGGCAAGCTGAA+GGG | - | chr3.1:68657350-68657369 | MS.gene79129:intron | 50.0% | |
| GCCACTCAGAAGACTGTTGA+TGG | - | chr3.1:68656903-68656922 | MS.gene79129:intron | 50.0% | |
| GCTGCTGGGAATGATGTTGA+AGG | + | chr3.1:68656967-68656986 | None:intergenic | 50.0% | |
| TGGGACACGGAATGACATTC+CGG | + | chr3.1:68657153-68657172 | None:intergenic | 50.0% | |
| ! | TGATTAGGGTGGTGCCAAGA+AGG | - | chr3.1:68656424-68656443 | MS.gene79129:intron | 50.0% |
| !!! | GGGCAAGCTGAAGGGTATTT+TGG | - | chr3.1:68657358-68657377 | MS.gene79129:intron | 50.0% |
| ACCACAGTTCACGCCATCAC+AGG | - | chr3.1:68656710-68656729 | MS.gene79129:intron | 55.0% | |
| CACCCCATGGAATCTCCTCA+GGG | + | chr3.1:68655992-68656011 | None:intergenic | 55.0% | |
| CCATCAAGCAAGGACTGGAG+AGG | - | chr3.1:68656927-68656946 | MS.gene79129:intron | 55.0% | |
| CCTCTCCAGTCCTTGCTTGA+TGG | + | chr3.1:68656930-68656949 | None:intergenic | 55.0% | |
| GAGATTCCATGGGGTGAGGT+TGG | - | chr3.1:68655996-68656015 | MS.gene79129:intron | 55.0% | |
| GGAACCCTGAGGAGATTCCA+TGG | - | chr3.1:68655985-68656004 | MS.gene79129:intron | 55.0% | |
| GGAATCAGAGGGCAAGCTGA+AGG | - | chr3.1:68657349-68657368 | MS.gene79129:intron | 55.0% | |
| GGCAGCCTTGATCTGCTCAT+AGG | + | chr3.1:68657228-68657247 | None:intergenic | 55.0% | |
| TCAAGCAAGGACTGGAGAGG+TGG | - | chr3.1:68656930-68656949 | MS.gene79129:intron | 55.0% | |
| TCACCCCATGGAATCTCCTC+AGG | + | chr3.1:68655993-68656012 | None:intergenic | 55.0% | |
| TGAGGAGATTCCATGGGGTG+AGG | - | chr3.1:68655992-68656011 | MS.gene79129:intron | 55.0% | |
| ! | ACCTGTGATGGCGTGAACTG+TGG | + | chr3.1:68656714-68656733 | None:intergenic | 55.0% |
| AAACCTTGGCGAGGGGAGCA+AGG | + | chr3.1:68656562-68656581 | None:intergenic | 60.0% | |
| CTTGCCCTCTGATTCCTCCC+TGG | + | chr3.1:68657345-68657364 | None:intergenic | 60.0% | |
| TCAGCTCCAACCTCACCCCA+TGG | + | chr3.1:68656005-68656024 | None:intergenic | 60.0% | |
| ! | TTGGCAGCTCCAGTGCTGCT+GGG | + | chr3.1:68656981-68657000 | None:intergenic | 60.0% |
| CTTGGCAGCTCCAGTGCTGC+TGG | + | chr3.1:68656982-68657001 | None:intergenic | 65.0% | |
| ! | CAGCAGCACTGGAGCTGCCA+AGG | - | chr3.1:68656980-68656999 | MS.gene79129:intron | 65.0% |
| CTGCCTTGCTCCCCTCGCCA+AGG | - | chr3.1:68656556-68656575 | MS.gene79129:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 68655335 | 68657768 | 68655335 | ID=MS.gene79129 |
| chr3.1 | mRNA | 68655335 | 68657768 | 68655335 | ID=MS.gene79129.t1;Parent=MS.gene79129 |
| chr3.1 | exon | 68657765 | 68657768 | 68657765 | ID=MS.gene79129.t1.exon1;Parent=MS.gene79129.t1 |
| chr3.1 | CDS | 68657765 | 68657768 | 68657765 | ID=cds.MS.gene79129.t1;Parent=MS.gene79129.t1 |
| chr3.1 | exon | 68657628 | 68657660 | 68657628 | ID=MS.gene79129.t1.exon2;Parent=MS.gene79129.t1 |
| chr3.1 | CDS | 68657628 | 68657660 | 68657628 | ID=cds.MS.gene79129.t1;Parent=MS.gene79129.t1 |
| chr3.1 | exon | 68657430 | 68657530 | 68657430 | ID=MS.gene79129.t1.exon3;Parent=MS.gene79129.t1 |
| chr3.1 | CDS | 68657430 | 68657530 | 68657430 | ID=cds.MS.gene79129.t1;Parent=MS.gene79129.t1 |
| chr3.1 | exon | 68657224 | 68657339 | 68657224 | ID=MS.gene79129.t1.exon4;Parent=MS.gene79129.t1 |
| chr3.1 | CDS | 68657224 | 68657339 | 68657224 | ID=cds.MS.gene79129.t1;Parent=MS.gene79129.t1 |
| chr3.1 | exon | 68657018 | 68657117 | 68657018 | ID=MS.gene79129.t1.exon5;Parent=MS.gene79129.t1 |
| chr3.1 | CDS | 68657018 | 68657117 | 68657018 | ID=cds.MS.gene79129.t1;Parent=MS.gene79129.t1 |
| chr3.1 | exon | 68656526 | 68656672 | 68656526 | ID=MS.gene79129.t1.exon6;Parent=MS.gene79129.t1 |
| chr3.1 | CDS | 68656526 | 68656672 | 68656526 | ID=cds.MS.gene79129.t1;Parent=MS.gene79129.t1 |
| chr3.1 | exon | 68656372 | 68656432 | 68656372 | ID=MS.gene79129.t1.exon7;Parent=MS.gene79129.t1 |
| chr3.1 | CDS | 68656372 | 68656432 | 68656372 | ID=cds.MS.gene79129.t1;Parent=MS.gene79129.t1 |
| chr3.1 | exon | 68656102 | 68656199 | 68656102 | ID=MS.gene79129.t1.exon8;Parent=MS.gene79129.t1 |
| chr3.1 | CDS | 68656102 | 68656199 | 68656102 | ID=cds.MS.gene79129.t1;Parent=MS.gene79129.t1 |
| chr3.1 | exon | 68655851 | 68655993 | 68655851 | ID=MS.gene79129.t1.exon9;Parent=MS.gene79129.t1 |
| chr3.1 | CDS | 68655851 | 68655993 | 68655851 | ID=cds.MS.gene79129.t1;Parent=MS.gene79129.t1 |
| chr3.1 | exon | 68655674 | 68655757 | 68655674 | ID=MS.gene79129.t1.exon10;Parent=MS.gene79129.t1 |
| chr3.1 | CDS | 68655674 | 68655757 | 68655674 | ID=cds.MS.gene79129.t1;Parent=MS.gene79129.t1 |
| chr3.1 | exon | 68655482 | 68655571 | 68655482 | ID=MS.gene79129.t1.exon11;Parent=MS.gene79129.t1 |
| chr3.1 | CDS | 68655482 | 68655571 | 68655482 | ID=cds.MS.gene79129.t1;Parent=MS.gene79129.t1 |
| chr3.1 | exon | 68655335 | 68655380 | 68655335 | ID=MS.gene79129.t1.exon12;Parent=MS.gene79129.t1 |
| chr3.1 | CDS | 68655335 | 68655380 | 68655335 | ID=cds.MS.gene79129.t1;Parent=MS.gene79129.t1 |
| Gene Sequence |
| Protein sequence |
