AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66156


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 129 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGGTTATTTCTGAATTT+TGG 0.100925 3.2:-48160684 None:intergenic
GGTTCAACCTTGTCGATTTC+TGG 0.115382 3.2:-48160966 None:intergenic
TCACCGACAGAAATGTATTT+TGG 0.179040 3.2:-48160519 None:intergenic
TTTCTGAGAGTTCAACTTTC+GGG 0.228286 3.2:+48160754 MS.gene66156:CDS
ATCACTACTCAAGGAAATTC+AGG 0.231775 3.2:+48161665 MS.gene66156:CDS
AGCTGACTTTCAACTGATTA+AGG 0.233603 3.2:-48160371 None:intergenic
TCGTTTATTACATTAATAAT+TGG 0.262828 3.2:-48160145 None:intergenic
AATAATTGGCTTGTTTCTAA+TGG 0.271732 3.2:-48160131 None:intergenic
CAGTCTGCACACTCAGATTT+GGG 0.301896 3.2:+48160095 MS.gene66156:CDS
TATCTAATTCATCGATTTGC+TGG 0.325440 3.2:-48160479 None:intergenic
ACAGTCTGCACACTCAGATT+TGG 0.327224 3.2:+48160094 MS.gene66156:CDS
AGACACTGCTGAAGCTGTTC+AGG 0.331982 3.2:+48162247 MS.gene66156:CDS
TCAAGGAAATTCAGGGTCTT+AGG 0.335572 3.2:+48161673 MS.gene66156:CDS
GGAGTCAAAATTATTGAAAA+AGG 0.345094 3.2:+48162196 MS.gene66156:CDS
TTTAGGAAAATCGTTTAAAC+GGG 0.346892 3.2:+48160785 MS.gene66156:CDS
AACTCTGGTCCATCAAATAT+TGG 0.354061 3.2:-48160651 None:intergenic
TAAAGCATTTGGAAAATGTA+AGG 0.361800 3.2:+48161165 MS.gene66156:intron
CTCTCTGATCTAACTCTTCA+AGG 0.369737 3.2:-48161614 None:intergenic
GCTGAAGCTGTTCAGGCTGC+CGG 0.383221 3.2:+48162254 MS.gene66156:CDS
CGAGCTCCGTCTCTCTCATT+TGG 0.387224 3.2:-48161196 None:intergenic
GTTTCTGAGAGTTCAACTTT+CGG 0.389009 3.2:+48160753 MS.gene66156:CDS
TTAACTCTTCGTTATCTTGT+CGG 0.394115 3.2:-48162442 None:intergenic
CTGAAGCTGTTCAGGCTGCC+GGG 0.395531 3.2:+48162255 MS.gene66156:CDS
GTGATGTTCATAGCTCAGTT+GGG 0.402377 3.2:+48160307 MS.gene66156:CDS
CTCCGCAAAATACTGCTTCA+TGG 0.406924 3.2:-48162513 None:intergenic
AGAATTCGGAGCGATATATC+AGG 0.408074 3.2:+48162643 MS.gene66156:CDS
GAAGAAGGGTGCAGAAGAAA+TGG 0.413625 3.2:+48161953 MS.gene66156:CDS
AAGCTCAGAAGAAAGGGATT+TGG 0.419524 3.2:-48162147 None:intergenic
CTTCTGAGCTTTCTGCATTG+AGG 0.420127 3.2:+48162159 MS.gene66156:CDS
GAGCTTGAAGATTTGTTCAA+TGG 0.421344 3.2:-48160909 None:intergenic
AAGAGAGAGATGGACAGAAA+TGG 0.421576 3.2:+48161836 MS.gene66156:CDS
CATCGAGTTATCTAGGAAGT+AGG 0.421838 3.2:+48160724 MS.gene66156:CDS
AGCAAATCTCCAATATTTGA+TGG 0.437239 3.2:+48160642 MS.gene66156:CDS
ACCCTCATCAAACACAGAAA+TGG 0.438437 3.2:-48161379 None:intergenic
TCTAACTTAGATAATAATAC+TGG 0.440028 3.2:+48160414 MS.gene66156:CDS
TGAGCTTTCTGCATTGAGGT+TGG 0.445350 3.2:+48162163 MS.gene66156:CDS
CAAGCATGGAGAGCAGAATT+CGG 0.451150 3.2:+48162629 MS.gene66156:CDS
AATTGAGCAACTAAATCAAT+TGG 0.453297 3.2:+48161247 MS.gene66156:CDS
TGAACTGAAGTTAGAGAAGA+AGG 0.454333 3.2:+48161938 MS.gene66156:CDS
GTCAGGCAAAGCTGAGTCCT+TGG 0.461680 3.2:+48160833 MS.gene66156:CDS
TGTTGTATTGTTTGATCACA+AGG 0.468992 3.2:-48160987 None:intergenic
CAATTATCTGTAATCCCCTC+TGG 0.473650 3.2:-48160866 None:intergenic
TGGTAAAATCCGACACTTGA+AGG 0.474149 3.2:+48160183 MS.gene66156:CDS
GGTGATGTTCATAGCTCAGT+TGG 0.475982 3.2:+48160306 MS.gene66156:CDS
TGCAGAAAGCTCAGAAGAAA+GGG 0.480652 3.2:-48162153 None:intergenic
TTTCCCGCACGTTATGTCCT+TGG 0.482261 3.2:-48160347 None:intergenic
CCGCCGGCGTGCAGAGAAGT+TGG 0.484497 3.2:+48161911 MS.gene66156:CDS
ATGCAGAAAGCTCAGAAGAA+AGG 0.485298 3.2:-48162154 None:intergenic
GGAGCTCGAGAGTGTTTGTA+AGG 0.486038 3.2:+48161211 MS.gene66156:CDS
TATTATTATCTAAGTTAGAC+AGG 0.486122 3.2:-48160410 None:intergenic
AGGGATAGCCGAGGTGAAGA+AGG 0.490954 3.2:+48162085 MS.gene66156:CDS
GACATGGTGTCAAAGTTAAA+CGG 0.496052 3.2:-48160944 None:intergenic
TGTTAACGGGCATGCAAGAA+TGG 0.500316 3.2:+48161995 MS.gene66156:CDS
TCATTCGCTGTATGTTATAG+AGG 0.504731 3.2:+48161569 MS.gene66156:CDS
CGATAATAGGAATGAGGAGC+TGG 0.505395 3.2:+48161806 MS.gene66156:CDS
AGTTAAACGGCCAAAAGAAA+AGG 0.508279 3.2:-48160931 None:intergenic
GGACAGAAATGGAAAGCGAT+TGG 0.518530 3.2:+48161847 MS.gene66156:CDS
TTCAAAGCATGATGCTATGA+AGG 0.522125 3.2:+48162061 MS.gene66156:CDS
CATTGAGGTTGGAGAGGGAA+AGG 0.525492 3.2:+48162174 MS.gene66156:CDS
TTCTGCATTGAGGTTGGAGA+GGG 0.526597 3.2:+48162169 MS.gene66156:CDS
TTCTCACGATAATAGGAATG+AGG 0.529552 3.2:+48161800 MS.gene66156:CDS
AGTGGCCTCAATGCAGACTC+TGG 0.537509 3.2:-48162545 None:intergenic
GGTAAGAATGGATGCTTCCA+AGG 0.537666 3.2:+48160330 MS.gene66156:CDS
TTTGGAGACTCGGACAACTC+TGG 0.538030 3.2:-48160666 None:intergenic
AAGCATGATGCTATGAAGGA+AGG 0.539714 3.2:+48162065 MS.gene66156:CDS
TGATGTTCATAGCTCAGTTG+GGG 0.539922 3.2:+48160308 MS.gene66156:CDS
ACCTTGTCGATTTCTGGACA+TGG 0.542707 3.2:-48160960 None:intergenic
AGCATGATGCTATGAAGGAA+GGG 0.547067 3.2:+48162066 MS.gene66156:CDS
CCGAGGAGCAATTCCTTGCA+TGG 0.547210 3.2:+48161546 MS.gene66156:CDS
TGAAGCTGTTCAGGCTGCCG+GGG 0.548202 3.2:+48162256 MS.gene66156:CDS
ATTGAGGTTGGAGAGGGAAA+GGG 0.549474 3.2:+48162175 MS.gene66156:CDS
AAAGCATTTGGAAAATGTAA+GGG 0.551141 3.2:+48161166 MS.gene66156:intron
CTCCATTTCTGTGTTTGATG+AGG 0.554459 3.2:+48161377 MS.gene66156:CDS
TCACTACTCAAGGAAATTCA+GGG 0.555066 3.2:+48161666 MS.gene66156:CDS
TGTTCAATGGCGAGTTCTGT+TGG 0.555174 3.2:-48160896 None:intergenic
GGAAGAACTTATTAGAGTGA+AGG 0.555532 3.2:+48160281 MS.gene66156:intron
CTCCATGAAGGATGAAAACA+AGG 0.562147 3.2:+48161413 MS.gene66156:CDS
ATGCAAACTTCATTACAGTC+AGG 0.562909 3.2:+48160816 MS.gene66156:CDS
TGAGAAAGAATCACTACTCA+AGG 0.567723 3.2:+48161656 MS.gene66156:CDS
TACCACTGCCTTCTTCACCT+CGG 0.568662 3.2:-48162093 None:intergenic
TTTGTCATTTGCAGCTTCCG+AGG 0.568684 3.2:+48161529 MS.gene66156:intron
CTCCAGGTGGAGAAATTGAA+AGG 0.568982 3.2:+48161339 MS.gene66156:intron
AGGAGTTTACCTTCAAGTGT+CGG 0.572777 3.2:-48160192 None:intergenic
TCCATTTCTGTGTTTGATGA+GGG 0.573702 3.2:+48161378 MS.gene66156:CDS
AATTAGATAGTTCATGTGAA+GGG 0.574098 3.2:+48160493 MS.gene66156:CDS
CACGCCGGCGGTACGACTCA+AGG 0.574481 3.2:-48161899 None:intergenic
TCAGAATCCTCTTGATAGAG+TGG 0.583069 3.2:-48162563 None:intergenic
ATTCCAAAATACATTTCTGT+CGG 0.587934 3.2:+48160516 MS.gene66156:CDS
TAGTCTAACAAGTAGTTCCC+CGG 0.588838 3.2:-48162273 None:intergenic
ATAGGTGAAGAAAATTCTGT+TGG 0.592812 3.2:+48160594 MS.gene66156:CDS
AAAAGACCAAATGAGAGAGA+CGG 0.594496 3.2:+48161190 MS.gene66156:CDS
GAACTTATTAGAGTGAAGGC+TGG 0.596868 3.2:+48160285 MS.gene66156:CDS
GAATTAGATAGTTCATGTGA+AGG 0.602229 3.2:+48160492 MS.gene66156:CDS
CCATGCAAGGAATTGCTCCT+CGG 0.607562 3.2:-48161546 None:intergenic
ACAAGATGCACAAAGGAATG+TGG 0.609754 3.2:-48161036 None:intergenic
ATGCTTATGATGATCAAGCA+TGG 0.613262 3.2:+48162615 MS.gene66156:CDS
TGGAAAATGAAAGAGAGAGA+TGG 0.616686 3.2:+48161826 MS.gene66156:CDS
TTTCTGCATTGAGGTTGGAG+AGG 0.623912 3.2:+48162168 MS.gene66156:CDS
ATACAGCGAATGACCATGCA+AGG 0.624940 3.2:-48161559 None:intergenic
TGAAGAGTATAGCTCCATGA+AGG 0.629242 3.2:+48161401 MS.gene66156:CDS
CAAAATTCAGAAATAACCAA+AGG 0.631238 3.2:+48160685 MS.gene66156:CDS
AGTTAGACAGGAGTATAGAA+CGG 0.632231 3.2:-48160398 None:intergenic
CCTCTGGAGACTTTCTGCCA+AGG 0.632708 3.2:-48160850 None:intergenic
TGCTTGATCATCATAAGCAT+AGG 0.633986 3.2:-48162612 None:intergenic
CTTGGCAGAAAGTCTCCAGA+GGG 0.636705 3.2:+48160851 MS.gene66156:CDS
AGCCGAGGTGAAGAAGGCAG+TGG 0.636732 3.2:+48162091 MS.gene66156:CDS
CCAACTTCTCTGCACGCCGG+CGG 0.637313 3.2:-48161911 None:intergenic
CTGACCTTGAGTCGTACCGC+CGG 0.637581 3.2:+48161895 MS.gene66156:CDS
CTTCCAAGGACATAACGTGC+GGG 0.638697 3.2:+48160344 MS.gene66156:CDS
TATGATGCAGACACAACCAT+AGG 0.644978 3.2:+48160576 MS.gene66156:CDS
ATTGAGGCCACTCTATCAAG+AGG 0.645737 3.2:+48162556 MS.gene66156:CDS
AGTCTGCACACTCAGATTTG+GGG 0.651600 3.2:+48160096 MS.gene66156:CDS
AAATAACCAAAGGAAAAGTG+TGG 0.656978 3.2:+48160695 MS.gene66156:CDS
ACTGGTGTAGCTGTAAATGT+TGG 0.662114 3.2:+48160432 MS.gene66156:CDS
GAACTGAAGTTAGAGAAGAA+GGG 0.663027 3.2:+48161939 MS.gene66156:CDS
CTGTACGACAAGATGCACAA+AGG 0.663712 3.2:-48161043 None:intergenic
GCTTCCAAGGACATAACGTG+CGG 0.669722 3.2:+48160343 MS.gene66156:CDS
AATTGCCAGAGTCTGCATTG+AGG 0.675854 3.2:+48162540 MS.gene66156:CDS
CCTTGGCAGAAAGTCTCCAG+AGG 0.681962 3.2:+48160850 MS.gene66156:CDS
ACAAGCTGCATATGTTGCTG+AGG 0.684756 3.2:+48162307 MS.gene66156:CDS
AACGAGGCTGACGATTTGAG+TGG 0.685226 3.2:+48160163 MS.gene66156:CDS
TTAGGAAAATCGTTTAAACG+GGG 0.688251 3.2:+48160786 MS.gene66156:CDS
TTTCCAACTTCTCTGCACGC+CGG 0.689945 3.2:-48161914 None:intergenic
AATTATTAATGTAATAAACG+AGG 0.705088 3.2:+48160147 MS.gene66156:CDS
TGTAGCTGTAAATGTTGGCG+AGG 0.705912 3.2:+48160437 MS.gene66156:CDS
TATGAAGGAAGGGATAGCCG+AGG 0.732422 3.2:+48162076 MS.gene66156:CDS
ACCATGTCCAGAAATCGACA+AGG 0.737578 3.2:+48160959 MS.gene66156:CDS
GATGTTCATAGCTCAGTTGG+GGG 0.737934 3.2:+48160309 MS.gene66156:CDS
TTGGCAGAAAGTCTCCAGAG+GGG 0.789827 3.2:+48160852 MS.gene66156:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTAATGTAATAAACG+AGG + chr3.2:48160147-48160166 MS.gene66156:CDS 15.0%
!! ATTGAATTAAATATCAACAA+TGG - chr3.2:48161440-48161459 None:intergenic 15.0%
!! TCGTTTATTACATTAATAAT+TGG - chr3.2:48160148-48160167 None:intergenic 15.0%
!!! TTAATTGAAACAGTTTTATA+AGG + chr3.2:48160222-48160241 MS.gene66156:intron 15.0%
!! TATTATTATCTAAGTTAGAC+AGG - chr3.2:48160413-48160432 None:intergenic 20.0%
!! TCTAACTTAGATAATAATAC+TGG + chr3.2:48160414-48160433 MS.gene66156:CDS 20.0%
!! TTACATTTCTTATGTTATAC+AGG + chr3.2:48162403-48162422 MS.gene66156:intron 20.0%
!!! ATCATATTTTTCTTGAAGAT+CGG - chr3.2:48162033-48162052 None:intergenic 20.0%
!!! ATTAAGTTGAAACATACTTT+TGG - chr3.2:48161086-48161105 None:intergenic 20.0%
!!! TTTTAGGAAAATCGTTTAAA+CGG + chr3.2:48160784-48160803 MS.gene66156:CDS 20.0%
! AATTAGATAGTTCATGTGAA+GGG + chr3.2:48160493-48160512 MS.gene66156:CDS 25.0%
! AATTGAGCAACTAAATCAAT+TGG + chr3.2:48161247-48161266 MS.gene66156:CDS 25.0%
! ATTCCAAAATACATTTCTGT+CGG + chr3.2:48160516-48160535 MS.gene66156:CDS 25.0%
! CAAAATTCAGAAATAACCAA+AGG + chr3.2:48160685-48160704 MS.gene66156:CDS 25.0%
! GGAGTCAAAATTATTGAAAA+AGG + chr3.2:48162196-48162215 MS.gene66156:CDS 25.0%
! TCAAGAAAAATATGATGACT+TGG + chr3.2:48162037-48162056 MS.gene66156:CDS 25.0%
! TTTAGGAAAATCGTTTAAAC+GGG + chr3.2:48160785-48160804 MS.gene66156:CDS 25.0%
!! AAAGCATTTGGAAAATGTAA+GGG + chr3.2:48161166-48161185 MS.gene66156:intron 25.0%
!! GTTTAAACGATTTTCCTAAA+AGG - chr3.2:48160785-48160804 None:intergenic 25.0%
!! TAAAGCATTTGGAAAATGTA+AGG + chr3.2:48161165-48161184 MS.gene66156:intron 25.0%
!!! AATAATTGGCTTGTTTCTAA+TGG - chr3.2:48160134-48160153 None:intergenic 25.0%
!!! CTTTGGTTATTTCTGAATTT+TGG - chr3.2:48160687-48160706 None:intergenic 25.0%
!!! GAGAAGATTTTTAGTAAATG+TGG + chr3.2:48162349-48162368 MS.gene66156:intron 25.0%
!!! TGTTCAGTTTTATTCTTTTG+AGG + chr3.2:48160548-48160567 MS.gene66156:CDS 25.0%
!!! TTGTCTATAGAAATTTTGAC+TGG - chr3.2:48161726-48161745 None:intergenic 25.0%
AAATAACCAAAGGAAAAGTG+TGG + chr3.2:48160695-48160714 MS.gene66156:CDS 30.0%
AGCAAATCTCCAATATTTGA+TGG + chr3.2:48160642-48160661 MS.gene66156:CDS 30.0%
ATAGGTGAAGAAAATTCTGT+TGG + chr3.2:48160594-48160613 MS.gene66156:CDS 30.0%
CTGTTTCAATTAAAAAGTCC+AGG - chr3.2:48160215-48160234 None:intergenic 30.0%
GAATTAGATAGTTCATGTGA+AGG + chr3.2:48160492-48160511 MS.gene66156:CDS 30.0%
TGTTGTATTGTTTGATCACA+AGG - chr3.2:48160990-48161009 None:intergenic 30.0%
TTAACTCTTCGTTATCTTGT+CGG - chr3.2:48162445-48162464 None:intergenic 30.0%
TTAGGAAAATCGTTTAAACG+GGG + chr3.2:48160786-48160805 MS.gene66156:CDS 30.0%
! AACAGAATTTTCTTCACCTA+TGG - chr3.2:48160595-48160614 None:intergenic 30.0%
! GAAGTTGTATTTTCAAACAC+TGG - chr3.2:48162226-48162245 None:intergenic 30.0%
! GTGTATTTTCTCACGATAAT+AGG + chr3.2:48161793-48161812 MS.gene66156:CDS 30.0%
!! ATTTCTGAATTTTGGAGACT+CGG - chr3.2:48160679-48160698 None:intergenic 30.0%
!! TATCTAATTCATCGATTTGC+TGG - chr3.2:48160482-48160501 None:intergenic 30.0%
AAAAGACCAAATGAGAGAGA+CGG + chr3.2:48161190-48161209 MS.gene66156:CDS 35.0%
AACTCTGGTCCATCAAATAT+TGG - chr3.2:48160654-48160673 None:intergenic 35.0%
AGTTAAACGGCCAAAAGAAA+AGG - chr3.2:48160934-48160953 None:intergenic 35.0%
ATCACTACTCAAGGAAATTC+AGG + chr3.2:48161665-48161684 MS.gene66156:CDS 35.0%
ATGCAAACTTCATTACAGTC+AGG + chr3.2:48160816-48160835 MS.gene66156:CDS 35.0%
ATGCTTATGATGATCAAGCA+TGG + chr3.2:48162615-48162634 MS.gene66156:CDS 35.0%
CACTAAAAAGAGCTGTTAAC+GGG + chr3.2:48161982-48162001 MS.gene66156:CDS 35.0%
CGAAGAGTTAAAAATGCAAG+TGG + chr3.2:48162454-48162473 MS.gene66156:CDS 35.0%
GAACTGAAGTTAGAGAAGAA+GGG + chr3.2:48161939-48161958 MS.gene66156:CDS 35.0%
GCACTAAAAAGAGCTGTTAA+CGG + chr3.2:48161981-48162000 MS.gene66156:CDS 35.0%
GGAAGAACTTATTAGAGTGA+AGG + chr3.2:48160281-48160300 MS.gene66156:intron 35.0%
TATAAATTCTACCCAGACGA+CGG + chr3.2:48161473-48161492 MS.gene66156:intron 35.0%
TCACTACTCAAGGAAATTCA+GGG + chr3.2:48161666-48161685 MS.gene66156:CDS 35.0%
TCATTCGCTGTATGTTATAG+AGG + chr3.2:48161569-48161588 MS.gene66156:CDS 35.0%
TCCATACAACTGCAAAAAAG+TGG + chr3.2:48161771-48161790 MS.gene66156:CDS 35.0%
TCCATTTCTGTGTTTGATGA+GGG + chr3.2:48161378-48161397 MS.gene66156:CDS 35.0%
TGAACTGAAGTTAGAGAAGA+AGG + chr3.2:48161938-48161957 MS.gene66156:CDS 35.0%
TGAGAAAGAATCACTACTCA+AGG + chr3.2:48161656-48161675 MS.gene66156:CDS 35.0%
TGCTTGATCATCATAAGCAT+AGG - chr3.2:48162615-48162634 None:intergenic 35.0%
TGGAAAATGAAAGAGAGAGA+TGG + chr3.2:48161826-48161845 MS.gene66156:CDS 35.0%
TTCAAAGCATGATGCTATGA+AGG + chr3.2:48162061-48162080 MS.gene66156:CDS 35.0%
TTCTCACGATAATAGGAATG+AGG + chr3.2:48161800-48161819 MS.gene66156:CDS 35.0%
! AAAAAGCCACACTTTTCCTT+TGG - chr3.2:48160704-48160723 None:intergenic 35.0%
! AGCTGACTTTCAACTGATTA+AGG - chr3.2:48160374-48160393 None:intergenic 35.0%
! AGTTAGACAGGAGTATAGAA+CGG - chr3.2:48160401-48160420 None:intergenic 35.0%
! ATGCAAGTCTCTGTTTTCTT+TGG + chr3.2:48160254-48160273 MS.gene66156:intron 35.0%
! GACATGGTGTCAAAGTTAAA+CGG - chr3.2:48160947-48160966 None:intergenic 35.0%
! GAGCTTGAAGATTTGTTCAA+TGG - chr3.2:48160912-48160931 None:intergenic 35.0%
! GTGGTAAAAGCCTCTAAAAA+AGG + chr3.2:48162110-48162129 MS.gene66156:CDS 35.0%
! GTTTCTGAGAGTTCAACTTT+CGG + chr3.2:48160753-48160772 MS.gene66156:CDS 35.0%
! TACCATGAAGCAGTATTTTG+CGG + chr3.2:48162511-48162530 MS.gene66156:CDS 35.0%
! TCACCGACAGAAATGTATTT+TGG - chr3.2:48160522-48160541 None:intergenic 35.0%
! TCTTCAAGCTCCTTTTCTTT+TGG + chr3.2:48160921-48160940 MS.gene66156:CDS 35.0%
! TCTTTCGCTCTTAAAGCATT+TGG + chr3.2:48161154-48161173 MS.gene66156:intron 35.0%
! TTTCTGAGAGTTCAACTTTC+GGG + chr3.2:48160754-48160773 MS.gene66156:CDS 35.0%
!! AATGCTTTAAGAGCGAAAGA+AGG - chr3.2:48161154-48161173 None:intergenic 35.0%
!!! ACCACTTTTTTGCAGTTGTA+TGG - chr3.2:48161775-48161794 None:intergenic 35.0%
!!! GCTTTTTCATCGAGTTATCT+AGG + chr3.2:48160717-48160736 MS.gene66156:CDS 35.0%
AAGAGAGAGATGGACAGAAA+TGG + chr3.2:48161836-48161855 MS.gene66156:CDS 40.0%
AAGCATGATGCTATGAAGGA+AGG + chr3.2:48162065-48162084 MS.gene66156:CDS 40.0%
AAGCTCAGAAGAAAGGGATT+TGG - chr3.2:48162150-48162169 None:intergenic 40.0%
ACAAGATGCACAAAGGAATG+TGG - chr3.2:48161039-48161058 None:intergenic 40.0%
ACCAGCCACAAACATAATTC+AGG - chr3.2:48161290-48161309 None:intergenic 40.0%
ACCCTCATCAAACACAGAAA+TGG - chr3.2:48161382-48161401 None:intergenic 40.0%
ACTGGTGTAGCTGTAAATGT+TGG + chr3.2:48160432-48160451 MS.gene66156:CDS 40.0%
AGAATTCGGAGCGATATATC+AGG + chr3.2:48162643-48162662 MS.gene66156:CDS 40.0%
AGCATGATGCTATGAAGGAA+GGG + chr3.2:48162066-48162085 MS.gene66156:CDS 40.0%
AGGAGTTTACCTTCAAGTGT+CGG - chr3.2:48160195-48160214 None:intergenic 40.0%
ATGCAGAAAGCTCAGAAGAA+AGG - chr3.2:48162157-48162176 None:intergenic 40.0%
CAATTATCTGTAATCCCCTC+TGG - chr3.2:48160869-48160888 None:intergenic 40.0%
CATCGAGTTATCTAGGAAGT+AGG + chr3.2:48160724-48160743 MS.gene66156:CDS 40.0%
CTCCATGAAGGATGAAAACA+AGG + chr3.2:48161413-48161432 MS.gene66156:CDS 40.0%
CTCCATTTCTGTGTTTGATG+AGG + chr3.2:48161377-48161396 MS.gene66156:CDS 40.0%
CTCTCTGATCTAACTCTTCA+AGG - chr3.2:48161617-48161636 None:intergenic 40.0%
GAACTTATTAGAGTGAAGGC+TGG + chr3.2:48160285-48160304 MS.gene66156:CDS 40.0%
GATAATGTGCATTTGTCTCC+AGG + chr3.2:48161323-48161342 MS.gene66156:intron 40.0%
GCCACAAACATAATTCAGGA+AGG - chr3.2:48161286-48161305 None:intergenic 40.0%
GCCTTCCTGAATTATGTTTG+TGG + chr3.2:48161282-48161301 MS.gene66156:intron 40.0%
GTGATGTTCATAGCTCAGTT+GGG + chr3.2:48160307-48160326 MS.gene66156:CDS 40.0%
TAGTCTAACAAGTAGTTCCC+CGG - chr3.2:48162276-48162295 None:intergenic 40.0%
TATGATGCAGACACAACCAT+AGG + chr3.2:48160576-48160595 MS.gene66156:CDS 40.0%
TCAAGGAAATTCAGGGTCTT+AGG + chr3.2:48161673-48161692 MS.gene66156:CDS 40.0%
TCAGAATCCTCTTGATAGAG+TGG - chr3.2:48162566-48162585 None:intergenic 40.0%
TCCTGAATTATGTTTGTGGC+TGG + chr3.2:48161286-48161305 MS.gene66156:intron 40.0%
TGATGTTCATAGCTCAGTTG+GGG + chr3.2:48160308-48160327 MS.gene66156:CDS 40.0%
TGCAGAAAGCTCAGAAGAAA+GGG - chr3.2:48162156-48162175 None:intergenic 40.0%
TGGTAAAATCCGACACTTGA+AGG + chr3.2:48160183-48160202 MS.gene66156:CDS 40.0%
! ACTTTCGGGAATGACCTTTT+AGG + chr3.2:48160768-48160787 MS.gene66156:CDS 40.0%
! TGAAGAGTATAGCTCCATGA+AGG + chr3.2:48161401-48161420 MS.gene66156:CDS 40.0%
!! GTCTCTGTTTTCTTTGGTTC+AGG + chr3.2:48160260-48160279 MS.gene66156:intron 40.0%
!!! GACCTTGTTTTCATCCTTCA+TGG - chr3.2:48161418-48161437 None:intergenic 40.0%
!!! GCGTGCTTTACCTTTTTTAG+AGG - chr3.2:48162123-48162142 None:intergenic 40.0%
AATCAGAACAAACCGTCGTC+TGG - chr3.2:48161488-48161507 None:intergenic 45.0%
AATGTGCATTTGTCTCCAGG+TGG + chr3.2:48161326-48161345 MS.gene66156:intron 45.0%
AATTGCCAGAGTCTGCATTG+AGG + chr3.2:48162540-48162559 MS.gene66156:CDS 45.0%
ACAAGCTGCATATGTTGCTG+AGG + chr3.2:48162307-48162326 MS.gene66156:CDS 45.0%
ACAGTCTGCACACTCAGATT+TGG + chr3.2:48160094-48160113 MS.gene66156:CDS 45.0%
ACCATGTCCAGAAATCGACA+AGG + chr3.2:48160959-48160978 MS.gene66156:CDS 45.0%
AGTCTGCACACTCAGATTTG+GGG + chr3.2:48160096-48160115 MS.gene66156:CDS 45.0%
ATACAGCGAATGACCATGCA+AGG - chr3.2:48161562-48161581 None:intergenic 45.0%
ATCAGAACAAACCGTCGTCT+GGG - chr3.2:48161487-48161506 None:intergenic 45.0%
ATTGAGGCCACTCTATCAAG+AGG + chr3.2:48162556-48162575 MS.gene66156:CDS 45.0%
ATTGAGGTTGGAGAGGGAAA+GGG + chr3.2:48162175-48162194 MS.gene66156:CDS 45.0%
CAAGCATGGAGAGCAGAATT+CGG + chr3.2:48162629-48162648 MS.gene66156:CDS 45.0%
CAGTCTGCACACTCAGATTT+GGG + chr3.2:48160095-48160114 MS.gene66156:CDS 45.0%
CGATAATAGGAATGAGGAGC+TGG + chr3.2:48161806-48161825 MS.gene66156:CDS 45.0%
CTCCAGGTGGAGAAATTGAA+AGG + chr3.2:48161339-48161358 MS.gene66156:intron 45.0%
CTCCGCAAAATACTGCTTCA+TGG - chr3.2:48162516-48162535 None:intergenic 45.0%
CTCCTTTCAATTTCTCCACC+TGG - chr3.2:48161344-48161363 None:intergenic 45.0%
CTGTACGACAAGATGCACAA+AGG - chr3.2:48161046-48161065 None:intergenic 45.0%
CTTCTGAGCTTTCTGCATTG+AGG + chr3.2:48162159-48162178 MS.gene66156:CDS 45.0%
GACACTTGAAGGTAAACTCC+TGG + chr3.2:48160194-48160213 MS.gene66156:intron 45.0%
GATGTTCATAGCTCAGTTGG+GGG + chr3.2:48160309-48160328 MS.gene66156:CDS 45.0%
GGACAGAAATGGAAAGCGAT+TGG + chr3.2:48161847-48161866 MS.gene66156:CDS 45.0%
GGTAAGAATGGATGCTTCCA+AGG + chr3.2:48160330-48160349 MS.gene66156:CDS 45.0%
GGTGATGTTCATAGCTCAGT+TGG + chr3.2:48160306-48160325 MS.gene66156:CDS 45.0%
TGAGCTTTCTGCATTGAGGT+TGG + chr3.2:48162163-48162182 MS.gene66156:CDS 45.0%
TGTAGCTGTAAATGTTGGCG+AGG + chr3.2:48160437-48160456 MS.gene66156:CDS 45.0%
TGTTCAATGGCGAGTTCTGT+TGG - chr3.2:48160899-48160918 None:intergenic 45.0%
TTCTGCATTGAGGTTGGAGA+GGG + chr3.2:48162169-48162188 MS.gene66156:CDS 45.0%
TTTCTGCATTGAGGTTGGAG+AGG + chr3.2:48162168-48162187 MS.gene66156:CDS 45.0%
! GAAGAAGGGTGCAGAAGAAA+TGG + chr3.2:48161953-48161972 MS.gene66156:CDS 45.0%
! TGTTAACGGGCATGCAAGAA+TGG + chr3.2:48161995-48162014 MS.gene66156:CDS 45.0%
! TTTGTCATTTGCAGCTTCCG+AGG + chr3.2:48161529-48161548 MS.gene66156:intron 45.0%
!! ACCTTGTCGATTTCTGGACA+TGG - chr3.2:48160963-48160982 None:intergenic 45.0%
!! GGTTCAACCTTGTCGATTTC+TGG - chr3.2:48160969-48160988 None:intergenic 45.0%
AACGAGGCTGACGATTTGAG+TGG + chr3.2:48160163-48160182 MS.gene66156:CDS 50.0%
AGACACTGCTGAAGCTGTTC+AGG + chr3.2:48162247-48162266 MS.gene66156:CDS 50.0%
AGCTCAGTTGGGGGTAAGAA+TGG + chr3.2:48160318-48160337 MS.gene66156:CDS 50.0%
CATTGAGGTTGGAGAGGGAA+AGG + chr3.2:48162174-48162193 MS.gene66156:CDS 50.0%
CCATGCAAGGAATTGCTCCT+CGG - chr3.2:48161549-48161568 None:intergenic 50.0%
CTTCCAAGGACATAACGTGC+GGG + chr3.2:48160344-48160363 MS.gene66156:CDS 50.0%
CTTGGCAGAAAGTCTCCAGA+GGG + chr3.2:48160851-48160870 MS.gene66156:CDS 50.0%
GCTTCCAAGGACATAACGTG+CGG + chr3.2:48160343-48160362 MS.gene66156:CDS 50.0%
TACCACTGCCTTCTTCACCT+CGG - chr3.2:48162096-48162115 None:intergenic 50.0%
TATGAAGGAAGGGATAGCCG+AGG + chr3.2:48162076-48162095 MS.gene66156:CDS 50.0%
TTGGCAGAAAGTCTCCAGAG+GGG + chr3.2:48160852-48160871 MS.gene66156:CDS 50.0%
TTTCCAACTTCTCTGCACGC+CGG - chr3.2:48161917-48161936 None:intergenic 50.0%
TTTCCCGCACGTTATGTCCT+TGG - chr3.2:48160350-48160369 None:intergenic 50.0%
TTTGGAGACTCGGACAACTC+TGG - chr3.2:48160669-48160688 None:intergenic 50.0%
!! GGAGCTCGAGAGTGTTTGTA+AGG + chr3.2:48161211-48161230 MS.gene66156:CDS 50.0%
AGGGATAGCCGAGGTGAAGA+AGG + chr3.2:48162085-48162104 MS.gene66156:CDS 55.0%
AGTGGCCTCAATGCAGACTC+TGG - chr3.2:48162548-48162567 None:intergenic 55.0%
CCGAGGAGCAATTCCTTGCA+TGG + chr3.2:48161546-48161565 MS.gene66156:CDS 55.0%
CCTTGGCAGAAAGTCTCCAG+AGG + chr3.2:48160850-48160869 MS.gene66156:CDS 55.0%
CGAGCTCCGTCTCTCTCATT+TGG - chr3.2:48161199-48161218 None:intergenic 55.0%
GTCAGGCAAAGCTGAGTCCT+TGG + chr3.2:48160833-48160852 MS.gene66156:CDS 55.0%
! CCTCTGGAGACTTTCTGCCA+AGG - chr3.2:48160853-48160872 None:intergenic 55.0%
AGCCGAGGTGAAGAAGGCAG+TGG + chr3.2:48162091-48162110 MS.gene66156:CDS 60.0%
CTGAAGCTGTTCAGGCTGCC+GGG + chr3.2:48162255-48162274 MS.gene66156:CDS 60.0%
CTGACCTTGAGTCGTACCGC+CGG + chr3.2:48161895-48161914 MS.gene66156:CDS 60.0%
GCTGAAGCTGTTCAGGCTGC+CGG + chr3.2:48162254-48162273 MS.gene66156:CDS 60.0%
TGAAGCTGTTCAGGCTGCCG+GGG + chr3.2:48162256-48162275 MS.gene66156:CDS 60.0%
CCAACTTCTCTGCACGCCGG+CGG - chr3.2:48161914-48161933 None:intergenic 65.0%
CACGCCGGCGGTACGACTCA+AGG - chr3.2:48161902-48161921 None:intergenic 70.0%
CCGCCGGCGTGCAGAGAAGT+TGG + chr3.2:48161911-48161930 MS.gene66156:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 48160081 48162676 48160081 ID=MS.gene66156
chr3.2 mRNA 48160081 48162676 48160081 ID=MS.gene66156.t1;Parent=MS.gene66156
chr3.2 exon 48160081 48160204 48160081 ID=MS.gene66156.t1.exon1;Parent=MS.gene66156.t1
chr3.2 CDS 48160081 48160204 48160081 ID=cds.MS.gene66156.t1;Parent=MS.gene66156.t1
chr3.2 exon 48160282 48161088 48160282 ID=MS.gene66156.t1.exon2;Parent=MS.gene66156.t1
chr3.2 CDS 48160282 48161088 48160282 ID=cds.MS.gene66156.t1;Parent=MS.gene66156.t1
chr3.2 exon 48161170 48161268 48161170 ID=MS.gene66156.t1.exon3;Parent=MS.gene66156.t1
chr3.2 CDS 48161170 48161268 48161170 ID=cds.MS.gene66156.t1;Parent=MS.gene66156.t1
chr3.2 exon 48161345 48161434 48161345 ID=MS.gene66156.t1.exon4;Parent=MS.gene66156.t1
chr3.2 CDS 48161345 48161434 48161345 ID=cds.MS.gene66156.t1;Parent=MS.gene66156.t1
chr3.2 exon 48161543 48162328 48161543 ID=MS.gene66156.t1.exon5;Parent=MS.gene66156.t1
chr3.2 CDS 48161543 48162328 48161543 ID=cds.MS.gene66156.t1;Parent=MS.gene66156.t1
chr3.2 exon 48162425 48162676 48162425 ID=MS.gene66156.t1.exon6;Parent=MS.gene66156.t1
chr3.2 CDS 48162425 48162676 48162425 ID=cds.MS.gene66156.t1;Parent=MS.gene66156.t1
Gene Sequence

>MS.gene66156

GAGCAATGATGAAACAGTCTGCACACTCAGATTTGGGGAGAAAGTAAGATCCATTAGAAACAAGCCAATTATTAATGTAATAAACGAGGCTGACGATTTGAGTGGTAAAATCCGACACTTGAAGGTAAACTCCTGGACTTTTTAATTGAAACAGTTTTATAAGGATTAGACTGATGCAAGTCTCTGTTTTCTTTGGTTCAGGAAGAACTTATTAGAGTGAAGGCTGGTGATGTTCATAGCTCAGTTGGGGGTAAGAATGGATGCTTCCAAGGACATAACGTGCGGGAAAGCCTTAATCAGTTGAAAGTCAGCTTAAACCGTTCTATACTCCTGTCTAACTTAGATAATAATACTGGTGTAGCTGTAAATGTTGGCGAGGATGACATACAGCAATTACGCCAGCAAATCGATGAATTAGATAGTTCATGTGAAGGGATTCCAAAATACATTTCTGTCGGTGAAGATTGTGTTCAGTTTTATTCTTTTGAGGAAAATTATGATGCAGACACAACCATAGGTGAAGAAAATTCTGTTGGTGATAGCATTTCAGTCATGTCATGCAGCAAATCTCCAATATTTGATGGACCAGAGTTGTCCGAGTCTCCAAAATTCAGAAATAACCAAAGGAAAAGTGTGGCTTTTTCATCGAGTTATCTAGGAAGTAGGAACAATGTTTCTGAGAGTTCAACTTTCGGGAATGACCTTTTAGGAAAATCGTTTAAACGGGGTGAGCATATGCAAACTTCATTACAGTCAGGCAAAGCTGAGTCCTTGGCAGAAAGTCTCCAGAGGGGATTACAGATAATTGATTATCACCAACAGAACTCGCCATTGAACAAATCTTCAAGCTCCTTTTCTTTTGGCCGTTTAACTTTGACACCATGTCCAGAAATCGACAAGGTTGAACCTTGTGATCAAACAATACAACAAAACATTTCTAATGATGAAGTAACTTCCACATTCCTTTGTGCATCTTGTCGTACAGATTTAACAGATAAAGTTCCAAAAGTATGTTTCAACTTAATCTCTACAAATTTCTCTTTCAAATGTATTTTTTACTGACTATTTTTCCTTCTTTCGCTCTTAAAGCATTTGGAAAATGTAAGGGCAAAAGACCAAATGAGAGAGACGGAGCTCGAGAGTGTTTGTAAGGAGCAAGCAGCTAGAATTGAGCAACTAAATCAATTGGTATTAAGATTCTGCCTTCCTGAATTATGTTTGTGGCTGGTTTCTACATTTACTGATAATGTGCATTTGTCTCCAGGTGGAGAAATTGAAAGGAGAGAAAAATATAAACTCCATTTCTGTGTTTGATGAGGGTGAAGAGTATAGCTCCATGAAGGATGAAAACAAGGTCCATTGTTGATATTTAATTCAATTTAATTTTTTACATATAAATTCTACCCAGACGACGGTTTGTTCTGATTTGATTTAATTTTTCTTCTTCTTTTGTCATTTGCAGCTTCCGAGGAGCAATTCCTTGCATGGTCATTCGCTGTATGTTATAGAGGAAAAATGTGAAATCAAAGAAGTCCTTGAAGAGTTAGATCAGAGAGAGATCTCTTTTGATTCAACTGAGAAAGAATCACTACTCAAGGAAATTCAGGGTCTTAGGAGCAAGCTGCAATTATATAGTGATGCACCAGTCAAAATTTCTATAGACAAACTGAGAACTTCTTTAATGTCAAGATCCATACAACTGCAAAAAAGTGGTGTATTTTCTCACGATAATAGGAATGAGGAGCTGGAAAATGAAAGAGAGAGATGGACAGAAATGGAAAGCGATTGGATCTGTCTTACTGACGAACTTAGAGCTGACCTTGAGTCGTACCGCCGGCGTGCAGAGAAGTTGGAAACTGAACTGAAGTTAGAGAAGAAGGGTGCAGAAGAAATGGACGATGCACTAAAAAGAGCTGTTAACGGGCATGCAAGAATGGTAGAACACTATACCGATCTTCAAGAAAAATATGATGACTTGGCTTCAAAGCATGATGCTATGAAGGAAGGGATAGCCGAGGTGAAGAAGGCAGTGGTAAAAGCCTCTAAAAAAGGTAAAGCACGCTTTGCCAAATCCCTTTCTTCTGAGCTTTCTGCATTGAGGTTGGAGAGGGAAAGGGAGTCAAAATTATTGAAAAAGGAGAACCAGTGTTTGAAAATACAACTTCGAGACACTGCTGAAGCTGTTCAGGCTGCCGGGGAACTACTTGTTAGACTAAGAGAAGCTGAACAAGCTGCATATGTTGCTGAGGTACAATTCTATCATTGATCGAGAAGATTTTTAGTAAATGTGGCATTGCATATTTCTGACTCATTTATTGTTTATTACATTTCTTATGTTATACAGGAAAACTTTGCAAATGTCCGACAAGATAACGAAGAGTTAAAAATGCAAGTGGAGAAGCTGAATAGAAAACACAATACAGAGATTAATACCATGAAGCAGTATTTTGCGGAGAGCAAATTGCCAGAGTCTGCATTGAGGCCACTCTATCAAGAGGATTCTGATATGAAACACAATAATACAACTTCTTCCTATGCTTATGATGATCAAGCATGGAGAGCAGAATTCGGAGCGATATATCAGGAGCATTATTAA

Protein sequence

>MS.gene66156.t1

EQUUNSLHTQIWGESKIHUKQANYUCNKRGURFEWUNPTLEGRTYUSEGWUCSULSWGUEWMLPRTURAGKPUSVESQLKPFYTPVULRUUYWCSCKCWRGUHTAITPANRUIRUFMURDSKIHFCRURLCSVLFFUGKLUCRHNHRURKFCWUUHFSHVMQQISNIUWTRVVRVSKIQKUPKEKCGFFIELSRKUEQCFUEFNFREUPFRKIVUTGUAYANFITVRQSUVLGRKSPEGITDNULSPTELAIEQIFKLLFFWPFNFDTMSRNRQGUTLUSNNTTKHFUUUSNFHIPLCILSYRFNRUSSKTFGKCKGKRPNERDGARECLUGASSUNUATKSIGGEIERREKYKLHFCVUUGURVULHEGUKQASEEQFLAWSFAVCYRGKMUNQRSPURVRSERDLFUFNUERITTQGNSGSUEQAAIIUUCTSQNFYRQTENFFNVKIHTTAKKWCIFSRUUEUGAGKUKREMDRNGKRLDLSYURTUSUPUVVPPACREVGNUTEVREEGCRRNGRCTKKSCURACKNGRTLYRSSRKIUULGFKAUCYEGRDSRGEEGSGKSLUKRUSTLCQIPFFUAFCIEVGEGKGVKIIEKGEPVFENTTSRHCUSCSGCRGTTCUTKRSUTSCICCUGKLCKCPTRURRVKNASGEAEUKTQYRDUYHEAVFCGEQIARVCIEATLSRGFUYETQUYNFFLCLUUSSMESRIRSDISGALL