Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64029.t1 | XP_003589515.1 | 98.8 | 412 | 5 | 0 | 1 | 412 | 38 | 449 | 3.00E-228 | 800.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64029.t1 | B6ETT4 | 71.1 | 415 | 117 | 1 | 1 | 412 | 38 | 452 | 3.2e-178 | 625.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64029.t1 | G7I7R4 | 98.8 | 412 | 5 | 0 | 1 | 412 | 38 | 449 | 2.2e-228 | 800.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene64029 | 0.802617 | 5.15E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene64029 | 0.80323 | 3.85E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene64029 | 0.825281 | 5.11E-54 | -1.69E-46 |
| MS.gene050763 | MS.gene64029 | 0.827841 | 1.25E-54 | -1.69E-46 |
| MS.gene050826 | MS.gene64029 | 0.812232 | 4.70E-51 | -1.69E-46 |
| MS.gene051147 | MS.gene64029 | 0.806909 | 6.54E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene64029 | 0.805377 | 1.37E-49 | -1.69E-46 |
| MS.gene053301 | MS.gene64029 | 0.820105 | 8.17E-53 | -1.69E-46 |
| MS.gene053405 | MS.gene64029 | 0.812718 | 3.68E-51 | -1.69E-46 |
| MS.gene054379 | MS.gene64029 | 0.840161 | 1.03E-57 | -1.69E-46 |
| MS.gene054467 | MS.gene64029 | 0.804145 | 2.49E-49 | -1.69E-46 |
| MS.gene054468 | MS.gene64029 | 0.827006 | 1.99E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene64029 | 0.831203 | 1.91E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene64029 | 0.835138 | 2.00E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene64029 | 0.813191 | 2.90E-51 | -1.69E-46 |
| MS.gene057194 | MS.gene64029 | 0.833545 | 5.02E-56 | -1.69E-46 |
| MS.gene057469 | MS.gene64029 | 0.818909 | 1.53E-52 | -1.69E-46 |
| MS.gene05761 | MS.gene64029 | 0.848802 | 4.86E-60 | -1.69E-46 |
| MS.gene057929 | MS.gene64029 | 0.800524 | 1.38E-48 | -1.69E-46 |
| MS.gene058710 | MS.gene64029 | 0.808333 | 3.26E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene64029 | 0.804275 | 2.34E-49 | -1.69E-46 |
| MS.gene059664 | MS.gene64029 | 0.831916 | 1.27E-55 | -1.69E-46 |
| MS.gene060495 | MS.gene64029 | 0.800174 | 1.63E-48 | -1.69E-46 |
| MS.gene06052 | MS.gene64029 | 0.823668 | 1.22E-53 | -1.69E-46 |
| MS.gene060683 | MS.gene64029 | 0.82044 | 6.85E-53 | -1.69E-46 |
| MS.gene060685 | MS.gene64029 | 0.815726 | 7.97E-52 | -1.69E-46 |
| MS.gene060802 | MS.gene64029 | 0.848725 | 5.10E-60 | -1.69E-46 |
| MS.gene060998 | MS.gene64029 | 0.821151 | 4.70E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64029.t1 | MTR_1g025550 | 99.272 | 412 | 3 | 0 | 1 | 412 | 38 | 449 | 0.0 | 833 |
| MS.gene64029.t1 | MTR_4g073400 | 74.699 | 415 | 102 | 1 | 1 | 412 | 38 | 452 | 0.0 | 659 |
| MS.gene64029.t1 | MTR_1g094810 | 53.431 | 408 | 183 | 3 | 1 | 407 | 38 | 439 | 9.74e-154 | 446 |
| MS.gene64029.t1 | MTR_4g115660 | 32.135 | 445 | 265 | 9 | 3 | 413 | 38 | 479 | 5.37e-66 | 221 |
| MS.gene64029.t1 | MTR_7g075790 | 32.945 | 343 | 219 | 6 | 22 | 358 | 58 | 395 | 1.07e-59 | 202 |
| MS.gene64029.t1 | MTR_3g106660 | 33.149 | 362 | 218 | 8 | 16 | 370 | 51 | 395 | 2.26e-57 | 197 |
| MS.gene64029.t1 | MTR_8g035590 | 33.913 | 345 | 214 | 8 | 22 | 358 | 58 | 396 | 2.02e-54 | 189 |
| MS.gene64029.t1 | MTR_4g073510 | 54.348 | 138 | 55 | 2 | 287 | 421 | 191 | 323 | 1.21e-39 | 147 |
| MS.gene64029.t1 | MTR_4g073510 | 36.402 | 239 | 99 | 7 | 53 | 272 | 52 | 256 | 3.12e-23 | 101 |
| MS.gene64029.t1 | MTR_2g072180 | 26.871 | 294 | 185 | 11 | 30 | 299 | 72 | 359 | 5.21e-19 | 90.1 |
| MS.gene64029.t1 | MTR_4g052080 | 64.912 | 57 | 7 | 2 | 61 | 112 | 28 | 76 | 1.17e-13 | 68.6 |
| MS.gene64029.t1 | MTR_6g069470 | 41.573 | 89 | 47 | 3 | 218 | 306 | 13 | 96 | 3.24e-13 | 68.2 |
| MS.gene64029.t1 | MTR_3g067585 | 40.449 | 89 | 48 | 3 | 218 | 306 | 1 | 84 | 2.83e-11 | 62.0 |
| MS.gene64029.t1 | MTR_2g011590 | 38.824 | 85 | 47 | 3 | 222 | 306 | 4 | 83 | 7.40e-11 | 60.8 |
| MS.gene64029.t1 | MTR_6g084400 | 21.088 | 294 | 191 | 13 | 32 | 295 | 97 | 379 | 8.50e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64029.t1 | AT1G20080 | 72.048 | 415 | 113 | 1 | 1 | 412 | 38 | 452 | 0.0 | 640 |
| MS.gene64029.t1 | AT1G20080 | 72.048 | 415 | 113 | 1 | 1 | 412 | 38 | 452 | 0.0 | 640 |
| MS.gene64029.t1 | AT1G20080 | 72.048 | 415 | 113 | 1 | 1 | 412 | 38 | 452 | 0.0 | 640 |
| MS.gene64029.t1 | AT1G20080 | 72.048 | 415 | 113 | 1 | 1 | 412 | 38 | 452 | 0.0 | 640 |
| MS.gene64029.t1 | AT1G20080 | 72.048 | 415 | 113 | 1 | 1 | 412 | 38 | 452 | 0.0 | 640 |
| MS.gene64029.t1 | AT2G20990 | 69.784 | 417 | 121 | 2 | 1 | 412 | 38 | 454 | 0.0 | 608 |
| MS.gene64029.t1 | AT2G20990 | 65.986 | 441 | 121 | 3 | 1 | 412 | 38 | 478 | 0.0 | 595 |
| MS.gene64029.t1 | AT2G20990 | 63.956 | 455 | 121 | 3 | 1 | 412 | 38 | 492 | 0.0 | 590 |
| MS.gene64029.t1 | AT5G04220 | 52.913 | 412 | 188 | 5 | 2 | 407 | 39 | 450 | 5.92e-150 | 436 |
| MS.gene64029.t1 | AT5G04220 | 53.093 | 388 | 176 | 5 | 26 | 407 | 1 | 388 | 6.04e-148 | 429 |
| MS.gene64029.t1 | AT1G05500 | 34.174 | 357 | 227 | 5 | 3 | 354 | 38 | 391 | 1.06e-65 | 220 |
| MS.gene64029.t1 | AT2G21010 | 57.225 | 173 | 69 | 2 | 241 | 412 | 1 | 169 | 1.37e-62 | 202 |
| MS.gene64029.t1 | AT5G04220 | 46.460 | 226 | 115 | 5 | 188 | 407 | 3 | 228 | 1.94e-62 | 204 |
| MS.gene64029.t1 | AT3G61050 | 32.394 | 355 | 229 | 6 | 23 | 371 | 59 | 408 | 1.54e-55 | 192 |
| MS.gene64029.t1 | AT3G61050 | 32.394 | 355 | 229 | 6 | 23 | 371 | 59 | 408 | 1.54e-55 | 192 |
| MS.gene64029.t1 | AT1G05500 | 37.751 | 249 | 150 | 3 | 109 | 354 | 1 | 247 | 2.58e-48 | 170 |
| MS.gene64029.t1 | AT3G60950 | 26.351 | 296 | 170 | 8 | 36 | 329 | 41 | 290 | 1.78e-21 | 97.4 |
| MS.gene64029.t1 | AT3G61030 | 25.338 | 296 | 166 | 8 | 36 | 329 | 41 | 283 | 3.32e-19 | 90.1 |
| MS.gene64029.t1 | AT3G14590 | 27.027 | 296 | 184 | 11 | 30 | 299 | 23 | 312 | 1.62e-17 | 85.5 |
| MS.gene64029.t1 | AT3G14590 | 27.027 | 296 | 184 | 11 | 30 | 299 | 68 | 357 | 1.63e-17 | 85.5 |
| MS.gene64029.t1 | AT3G14590 | 27.027 | 296 | 184 | 11 | 30 | 299 | 37 | 326 | 1.91e-17 | 85.1 |
| MS.gene64029.t1 | AT1G53590 | 26.441 | 295 | 186 | 11 | 30 | 299 | 68 | 356 | 1.87e-16 | 82.0 |
| MS.gene64029.t1 | AT2G21040 | 65.306 | 49 | 17 | 0 | 364 | 412 | 2 | 50 | 2.82e-16 | 79.0 |
| MS.gene64029.t1 | AT1G48590 | 42.105 | 95 | 49 | 4 | 212 | 306 | 1 | 89 | 1.91e-14 | 71.6 |
| MS.gene64029.t1 | AT1G48590 | 42.105 | 95 | 49 | 4 | 212 | 306 | 1 | 89 | 1.91e-14 | 71.6 |
| MS.gene64029.t1 | AT1G48590 | 42.105 | 95 | 49 | 4 | 212 | 306 | 32 | 120 | 2.57e-14 | 72.0 |
| MS.gene64029.t1 | AT3G14590 | 26.199 | 271 | 170 | 10 | 55 | 299 | 5 | 271 | 3.01e-13 | 72.0 |
| MS.gene64029.t1 | AT2G01540 | 40.909 | 88 | 47 | 3 | 219 | 306 | 3 | 85 | 1.55e-12 | 66.2 |
| MS.gene64029.t1 | AT3G17980 | 39.130 | 92 | 51 | 3 | 215 | 306 | 10 | 96 | 7.06e-12 | 64.3 |
| MS.gene64029.t1 | AT3G14590 | 26.316 | 247 | 155 | 9 | 76 | 299 | 27 | 269 | 7.28e-12 | 67.8 |
| MS.gene64029.t1 | AT1G73580 | 33.108 | 148 | 85 | 5 | 218 | 362 | 4 | 140 | 2.02e-11 | 62.8 |
Find 81 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATCCATAAGGGTATTTC+TGG | 0.176766 | 1.3:-787989 | None:intergenic |
| GATAACTCATCATCCTTAAA+AGG | 0.195494 | 1.3:-790196 | None:intergenic |
| TTGCAGCCGCATGTTGATTT+TGG | 0.201989 | 1.3:+788912 | MS.gene64029:intron |
| CTTCAACATCTTCAGCTTCA+TGG | 0.205719 | 1.3:-790291 | None:intergenic |
| TGTCTATTCCTGGTCTTTAC+AGG | 0.225371 | 1.3:+788961 | MS.gene64029:CDS |
| TTTGCGCGGCTTATATTTAA+AGG | 0.251485 | 1.3:+790334 | MS.gene64029:CDS |
| GGAATTTGTTCAGCAATAAT+AGG | 0.273016 | 1.3:-788300 | None:intergenic |
| TTAAACTCTTCATTCCATTC+TGG | 0.286995 | 1.3:-789619 | None:intergenic |
| TTTGTGGCCTAAGGCCTTAC+AGG | 0.290174 | 1.3:+789315 | MS.gene64029:CDS |
| TACCATACCTTGTTCAAATA+AGG | 0.292069 | 1.3:-788154 | None:intergenic |
| GCTTAGAAAGAAAGATATAA+TGG | 0.304229 | 1.3:+789510 | MS.gene64029:CDS |
| TGATGAAAAGGAATTGATTA+TGG | 0.312221 | 1.3:+788507 | MS.gene64029:CDS |
| TTTCTTGTTTGCAGCTTGAT+TGG | 0.313508 | 1.3:+788104 | MS.gene64029:intron |
| TTAACTGCAACTATAATGTT+AGG | 0.313515 | 1.3:-788556 | None:intergenic |
| GGATCCTACATTTACTCCTT+TGG | 0.316311 | 1.3:+787931 | None:intergenic |
| CATGAGAGACACATAAATAT+TGG | 0.316964 | 1.3:-788799 | None:intergenic |
| TGCTTCCAGAAATACCCTTA+TGG | 0.317531 | 1.3:+787984 | MS.gene64029:CDS |
| ATAGTTGCAGTTAAAGCATT+TGG | 0.324968 | 1.3:+788565 | MS.gene64029:CDS |
| TAATGCTTAATGTTTATGAT+TGG | 0.327754 | 1.3:+789674 | MS.gene64029:CDS |
| AATTTAAGAGTAAGTAGTTT+TGG | 0.333174 | 1.3:-790097 | None:intergenic |
| GGCCTTACAGGTGCAAATAA+TGG | 0.335538 | 1.3:+789327 | MS.gene64029:CDS |
| GCGCATAATGTTGAAGCCTT+TGG | 0.341358 | 1.3:+788755 | MS.gene64029:CDS |
| TTCTCATTCTCAGGATCATT+AGG | 0.353471 | 1.3:-790136 | None:intergenic |
| TTATGGAATTATCAATGAAA+TGG | 0.362011 | 1.3:+788524 | MS.gene64029:CDS |
| TTGAGTTTAAGTTTCACATA+AGG | 0.380151 | 1.3:-789544 | None:intergenic |
| TGAGTTTAAGTTTCACATAA+GGG | 0.381669 | 1.3:-789543 | None:intergenic |
| TCAGGAAATTATAAAAGATC+AGG | 0.404435 | 1.3:+789279 | MS.gene64029:intron |
| GCAGATGCAATGTCTATTCC+TGG | 0.408163 | 1.3:+788951 | MS.gene64029:CDS |
| AATGCTTAATGTTTATGATT+GGG | 0.413882 | 1.3:+789675 | MS.gene64029:CDS |
| ATCCATTATTTGCACCTGTA+AGG | 0.414927 | 1.3:-789329 | None:intergenic |
| CTTAGAAAGAAAGATATAAT+GGG | 0.420642 | 1.3:+789511 | MS.gene64029:CDS |
| CCACTAGCAGGTGTTCCTTC+CGG | 0.429816 | 1.3:-790247 | None:intergenic |
| TAATGTTTATGATTGGGAAC+AGG | 0.431633 | 1.3:+789681 | MS.gene64029:CDS |
| GTTTGGAAAGGCTGAGAAGA+TGG | 0.433941 | 1.3:+790033 | MS.gene64029:intron |
| TAACATACACGGTCATAGTC+TGG | 0.434799 | 1.3:-788016 | None:intergenic |
| CCACGTGACTTCTCATTCTC+AGG | 0.435478 | 1.3:-790145 | None:intergenic |
| TGAATTTGAAGAACTTAACT+TGG | 0.437517 | 1.3:+788344 | MS.gene64029:CDS |
| TGGATTGCGAGCAACAGTTC+AGG | 0.437684 | 1.3:+788585 | MS.gene64029:CDS |
| GAATTATCAATGAAATGGGC+TGG | 0.454207 | 1.3:+788529 | MS.gene64029:CDS |
| TTCACATGAAGAATTCCAAC+TGG | 0.456262 | 1.3:-789469 | None:intergenic |
| AGTGTATAGCACTGATGAAA+AGG | 0.456613 | 1.3:+788495 | MS.gene64029:CDS |
| TTTGGTGTAAGCTCTTTCAA+TGG | 0.460667 | 1.3:-790070 | None:intergenic |
| TTAAATATAAGCCGCGCAAA+CGG | 0.466177 | 1.3:-790331 | None:intergenic |
| CTATATATACCTTGAAAAGT+TGG | 0.467929 | 1.3:-788378 | None:intergenic |
| CATGAAGCTGAAGATGTTGA+AGG | 0.474251 | 1.3:+790292 | MS.gene64029:CDS |
| TTATGTGTCTCTCATGGAAA+AGG | 0.484817 | 1.3:+788806 | MS.gene64029:CDS |
| ATAAATTTGTTGAGTGTATG+TGG | 0.489433 | 1.3:+788131 | MS.gene64029:CDS |
| TATGGAATTATCAATGAAAT+GGG | 0.501349 | 1.3:+788525 | MS.gene64029:CDS |
| ATTTGCACCTGTAAGGCCTT+AGG | 0.516595 | 1.3:-789322 | None:intergenic |
| AGAAGACACCGAAAAGGCTC+CGG | 0.523155 | 1.3:+790228 | MS.gene64029:CDS |
| TGGTCTTTACAGGATTGTCC+AGG | 0.529396 | 1.3:+788971 | MS.gene64029:CDS |
| AATTATCAATGAAATGGGCT+GGG | 0.534000 | 1.3:+788530 | MS.gene64029:CDS |
| AACAATGATACATACTGTGA+TGG | 0.538427 | 1.3:-789352 | None:intergenic |
| CAATATTTATGTGTCTCTCA+TGG | 0.544537 | 1.3:+788800 | MS.gene64029:CDS |
| GATCTGATAAAATAATACCT+TGG | 0.549984 | 1.3:-790371 | None:intergenic |
| ACAAGAACTTGAATCCAGAA+TGG | 0.555590 | 1.3:+789605 | MS.gene64029:CDS |
| TTTGGAAAGGCTGAGAAGAT+GGG | 0.557070 | 1.3:+790034 | MS.gene64029:CDS |
| TTGGCGAAACAAGGAAAACT+AGG | 0.559504 | 1.3:-788780 | None:intergenic |
| TTAGCTTCTTGCTCAACCAA+AGG | 0.569279 | 1.3:-787947 | None:intergenic |
| AAAAGCAAACCACCACTAGC+AGG | 0.570645 | 1.3:-790259 | None:intergenic |
| GAATTCAGAAGACACCGAAA+AGG | 0.571008 | 1.3:+790222 | MS.gene64029:CDS |
| TCAACCAAAGGAGTAAATGT+AGG | 0.571099 | 1.3:-787935 | None:intergenic |
| TATATACCTTGAAAAGTTGG+TGG | 0.574416 | 1.3:-788375 | None:intergenic |
| GGTGGTTAACTAGTTTGGAA+AGG | 0.576754 | 1.3:+790021 | MS.gene64029:intron |
| GAATTTGAAGAACTTAACTT+GGG | 0.579840 | 1.3:+788345 | MS.gene64029:CDS |
| CAAGGAAAACTAGGAACCAA+AGG | 0.582613 | 1.3:-788771 | None:intergenic |
| GTCACGTGGAGAGCTTATTG+TGG | 0.600730 | 1.3:+790159 | MS.gene64029:CDS |
| ACCACACAAATCCGTTTGCG+CGG | 0.615343 | 1.3:+790320 | MS.gene64029:CDS |
| ACATAAATATTGGCGAAACA+AGG | 0.620390 | 1.3:-788789 | None:intergenic |
| TTTAATCCAAAATCAACATG+CGG | 0.621366 | 1.3:-788918 | None:intergenic |
| GACACCGAAAAGGCTCCGGA+AGG | 0.626245 | 1.3:+790232 | MS.gene64029:CDS |
| CCGGAAGGAACACCTGCTAG+TGG | 0.626646 | 1.3:+790247 | MS.gene64029:CDS |
| GCGGCTTATATTTAAAGGCG+AGG | 0.630495 | 1.3:+790339 | MS.gene64029:CDS |
| AGAAAGAAAGATATAATGGG+AGG | 0.645260 | 1.3:+789514 | MS.gene64029:CDS |
| TATGTGGCCTTATTTGAACA+AGG | 0.651291 | 1.3:+788147 | MS.gene64029:CDS |
| CCTGAGAATGAGAAGTCACG+TGG | 0.651349 | 1.3:+790145 | MS.gene64029:CDS |
| GAAGGAACACCTGCTAGTGG+TGG | 0.656477 | 1.3:+790250 | MS.gene64029:CDS |
| ATGGAATGAAGAGTTTAATG+TGG | 0.658297 | 1.3:+789624 | MS.gene64029:CDS |
| TGGACAATCCTGTAAAGACC+AGG | 0.661769 | 1.3:-788969 | None:intergenic |
| GCCGCGCAAACGGATTTGTG+TGG | 0.677878 | 1.3:-790321 | None:intergenic |
| AAAGGCTTCAACATTATGCG+CGG | 0.685990 | 1.3:-788753 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAACATACA+CGG | - | chr1.3:788030-788049 | None:intergenic | 10.0% |
| !! | TATAACATAACATTATAATT+AGG | + | chr1.3:789392-789411 | MS.gene64029:intron | 10.0% |
| !!! | AAAATTTTTAAAAAAGTTGA+GGG | + | chr1.3:789847-789866 | MS.gene64029:intron | 10.0% |
| !!! | ATTGATTTTCAAAATTTTAT+TGG | + | chr1.3:788189-788208 | MS.gene64029:intron | 10.0% |
| !! | TCAAATATAAACAAAAAAAG+CGG | + | chr1.3:788621-788640 | MS.gene64029:intron | 15.0% |
| !! | TTATGTTATAAACTCATAAA+GGG | - | chr1.3:789382-789401 | None:intergenic | 15.0% |
| !!! | AAATTTTTAAAAAAGTTGAG+GGG | + | chr1.3:789848-789867 | MS.gene64029:intron | 15.0% |
| !!! | CAAAATTTTTAAAAAAGTTG+AGG | + | chr1.3:789846-789865 | MS.gene64029:intron | 15.0% |
| !! | AATGCTTAATGTTTATGATT+GGG | + | chr1.3:789675-789694 | MS.gene64029:CDS | 20.0% |
| !! | CAAGAATAATATTAATGACA+TGG | - | chr1.3:789017-789036 | None:intergenic | 20.0% |
| !! | CTTAGAAAGAAAGATATAAT+GGG | + | chr1.3:789511-789530 | MS.gene64029:CDS | 20.0% |
| !! | GTTATGTTATAAACTCATAA+AGG | - | chr1.3:789383-789402 | None:intergenic | 20.0% |
| !! | GTTGATCCAAATATATAATA+TGG | + | chr1.3:788459-788478 | MS.gene64029:intron | 20.0% |
| !! | TAATGCTTAATGTTTATGAT+TGG | + | chr1.3:789674-789693 | MS.gene64029:CDS | 20.0% |
| !! | TAATTAGGTGTTAATTAGAT+TGG | + | chr1.3:789407-789426 | MS.gene64029:intron | 20.0% |
| !! | TACAAAAAAGATTTAGTGAT+CGG | + | chr1.3:789043-789062 | MS.gene64029:intron | 20.0% |
| !! | TATGGAATTATCAATGAAAT+GGG | + | chr1.3:788525-788544 | MS.gene64029:CDS | 20.0% |
| !! | TTATGGAATTATCAATGAAA+TGG | + | chr1.3:788524-788543 | MS.gene64029:CDS | 20.0% |
| !!! | AAAACATTTAAAATCTCTTC+TGG | - | chr1.3:789816-789835 | None:intergenic | 20.0% |
| !!! | AACTATACTACTTTTTTAGA+GGG | - | chr1.3:788071-788090 | None:intergenic | 20.0% |
| !!! | AATTTAAGAGTAAGTAGTTT+TGG | - | chr1.3:790100-790119 | None:intergenic | 20.0% |
| !!! | GAAGAGATTTTAAATGTTTT+TGG | + | chr1.3:789816-789835 | MS.gene64029:intron | 20.0% |
| !!! | TTCATTTTCTGTTGTTAAAA+AGG | - | chr1.3:788675-788694 | None:intergenic | 20.0% |
| !!! | TTTAGCGATATTTTTCAAAT+CGG | + | chr1.3:789115-789134 | MS.gene64029:intron | 20.0% |
| !!! | TTTTTGTTTATATTTGAGTC+CGG | - | chr1.3:788618-788637 | None:intergenic | 20.0% |
| ! | AAAAGTCTTTAAATGATTGC+AGG | + | chr1.3:788704-788723 | MS.gene64029:intron | 25.0% |
| ! | ATAGACCAAAATTGACAAAT+TGG | + | chr1.3:789069-789088 | MS.gene64029:intron | 25.0% |
| ! | ATGCAAATTTAGACTAAAGT+TGG | + | chr1.3:789720-789739 | MS.gene64029:intron | 25.0% |
| ! | ATTGCTTGATTAACATTCTA+AGG | - | chr1.3:789939-789958 | None:intergenic | 25.0% |
| ! | CAAATATATAATATGGTTGC+AGG | + | chr1.3:788466-788485 | MS.gene64029:intron | 25.0% |
| ! | CATGCTTGAAAATATGTTAT+AGG | - | chr1.3:789986-790005 | None:intergenic | 25.0% |
| ! | CTATATATACCTTGAAAAGT+TGG | - | chr1.3:788381-788400 | None:intergenic | 25.0% |
| ! | CTGCAACCATATTATATATT+TGG | - | chr1.3:788468-788487 | None:intergenic | 25.0% |
| ! | GAATTTGAAGAACTTAACTT+GGG | + | chr1.3:788345-788364 | MS.gene64029:CDS | 25.0% |
| ! | GATCTGATAAAATAATACCT+TGG | - | chr1.3:790374-790393 | None:intergenic | 25.0% |
| ! | GCTTAGAAAGAAAGATATAA+TGG | + | chr1.3:789510-789529 | MS.gene64029:CDS | 25.0% |
| ! | TCAGGAAATTATAAAAGATC+AGG | + | chr1.3:789279-789298 | MS.gene64029:intron | 25.0% |
| ! | TGAATTTGAAGAACTTAACT+TGG | + | chr1.3:788344-788363 | MS.gene64029:CDS | 25.0% |
| ! | TGATGAAAAGGAATTGATTA+TGG | + | chr1.3:788507-788526 | MS.gene64029:CDS | 25.0% |
| ! | TTAACTGCAACTATAATGTT+AGG | - | chr1.3:788559-788578 | None:intergenic | 25.0% |
| ! | TTGCTTGATTAACATTCTAA+GGG | - | chr1.3:789938-789957 | None:intergenic | 25.0% |
| ! | TTTAATCCAAAATCAACATG+CGG | - | chr1.3:788921-788940 | None:intergenic | 25.0% |
| !! | AAGTTTTCAAAATTGCAAAC+TGG | - | chr1.3:789874-789893 | None:intergenic | 25.0% |
| !! | ACTGAATCAATTTTGTACTT+TGG | - | chr1.3:788324-788343 | None:intergenic | 25.0% |
| !! | AGTTATGTACAAACCTTTTA+AGG | + | chr1.3:790183-790202 | MS.gene64029:CDS | 25.0% |
| !! | AGTTGATATAGAAACTGATT+CGG | + | chr1.3:789155-789174 | MS.gene64029:intron | 25.0% |
| !! | GAAATTTAAAATTTGCAGAC+TGG | - | chr1.3:789904-789923 | None:intergenic | 25.0% |
| !! | GATTTTGGATTAAAACTACT+TGG | + | chr1.3:788927-788946 | MS.gene64029:CDS | 25.0% |
| !! | TATGGTTAGTACAACTATTT+TGG | + | chr1.3:788228-788247 | MS.gene64029:intron | 25.0% |
| !! | TGAGTTTAAGTTTCACATAA+GGG | - | chr1.3:789546-789565 | None:intergenic | 25.0% |
| !! | TTGAGTTTAAGTTTCACATA+AGG | - | chr1.3:789547-789566 | None:intergenic | 25.0% |
| !!! | ATAAATTTGTTGAGTGTATG+TGG | + | chr1.3:788131-788150 | MS.gene64029:CDS | 25.0% |
| !!! | CAACTATACTACTTTTTTAG+AGG | - | chr1.3:788072-788091 | None:intergenic | 25.0% |
| !!! | GTGAATGTTTTGGTTAAAAA+TGG | + | chr1.3:789788-789807 | MS.gene64029:intron | 25.0% |
| !!! | TCTGGATTTTTTATCCATAA+GGG | - | chr1.3:788001-788020 | None:intergenic | 25.0% |
| !!! | TTAGATTGGCTAATTTTACT+TGG | + | chr1.3:789421-789440 | MS.gene64029:intron | 25.0% |
| !!! | TTTACTTGGTTAATTTGTCA+GGG | + | chr1.3:789435-789454 | MS.gene64029:intron | 25.0% |
| !!! | TTTTACTTGGTTAATTTGTC+AGG | + | chr1.3:789434-789453 | MS.gene64029:intron | 25.0% |
| !!! | TTTTGGTTGAATGTTGTTAT+AGG | + | chr1.3:788245-788264 | MS.gene64029:intron | 25.0% |
| AAAAATGTATTTGTGGCCTA+AGG | + | chr1.3:789306-789325 | MS.gene64029:CDS | 30.0% | |
| AACAATGATACATACTGTGA+TGG | - | chr1.3:789355-789374 | None:intergenic | 30.0% | |
| ACATAAATATTGGCGAAACA+AGG | - | chr1.3:788792-788811 | None:intergenic | 30.0% | |
| AGGTTGCAAAAATGTATTTG+TGG | + | chr1.3:789299-789318 | MS.gene64029:CDS | 30.0% | |
| ATGGAATGAAGAGTTTAATG+TGG | + | chr1.3:789624-789643 | MS.gene64029:CDS | 30.0% | |
| CAATATTTATGTGTCTCTCA+TGG | + | chr1.3:788800-788819 | MS.gene64029:CDS | 30.0% | |
| CATGAGAGACACATAAATAT+TGG | - | chr1.3:788802-788821 | None:intergenic | 30.0% | |
| CATTTGTTCATCACAATGTT+AGG | - | chr1.3:788857-788876 | None:intergenic | 30.0% | |
| GATAACTCATCATCCTTAAA+AGG | - | chr1.3:790199-790218 | None:intergenic | 30.0% | |
| TAATGTTTATGATTGGGAAC+AGG | + | chr1.3:789681-789700 | MS.gene64029:CDS | 30.0% | |
| TACCATACCTTGTTCAAATA+AGG | - | chr1.3:788157-788176 | None:intergenic | 30.0% | |
| TATATACCTTGAAAAGTTGG+TGG | - | chr1.3:788378-788397 | None:intergenic | 30.0% | |
| TTAAACTCTTCATTCCATTC+TGG | - | chr1.3:789622-789641 | None:intergenic | 30.0% | |
| ! | AATTATCAATGAAATGGGCT+GGG | + | chr1.3:788530-788549 | MS.gene64029:CDS | 30.0% |
| ! | AGAAAGAAAGATATAATGGG+AGG | + | chr1.3:789514-789533 | MS.gene64029:CDS | 30.0% |
| ! | AGCATGTTACTTATTTCCTA+TGG | + | chr1.3:790000-790019 | MS.gene64029:intron | 30.0% |
| ! | AGTGACCAATTTGTCAATTT+TGG | - | chr1.3:789077-789096 | None:intergenic | 30.0% |
| ! | ATAGTTGCAGTTAAAGCATT+TGG | + | chr1.3:788565-788584 | MS.gene64029:CDS | 30.0% |
| ! | ATGTTACTTATTTCCTATGG+TGG | + | chr1.3:790003-790022 | MS.gene64029:intron | 30.0% |
| ! | GGAATTTGTTCAGCAATAAT+AGG | - | chr1.3:788303-788322 | None:intergenic | 30.0% |
| !! | TTAAAAAGGTGCATCGATTA+CGG | - | chr1.3:788661-788680 | None:intergenic | 30.0% |
| !! | TTTATCCATAAGGGTATTTC+TGG | - | chr1.3:787992-788011 | None:intergenic | 30.0% |
| !!! | AATTCCAACTGGTTTTTTCA+TGG | - | chr1.3:789461-789480 | None:intergenic | 30.0% |
| !!! | AGCATTAAGTTTTGAGATTC+TGG | - | chr1.3:789661-789680 | None:intergenic | 30.0% |
| !!! | GTAAGTAGTTTTGGTTCATT+TGG | - | chr1.3:790091-790110 | None:intergenic | 30.0% |
| !!! | GTCTGGATTTTTTATCCATA+AGG | - | chr1.3:788002-788021 | None:intergenic | 30.0% |
| AAAAAAGCGGCCATATTTAG+CGG | + | chr1.3:788634-788653 | MS.gene64029:intron | 35.0% | |
| ACAAGAACTTGAATCCAGAA+TGG | + | chr1.3:789605-789624 | MS.gene64029:CDS | 35.0% | |
| ATCCATTATTTGCACCTGTA+AGG | - | chr1.3:789332-789351 | None:intergenic | 35.0% | |
| ATTTCCTGAAAACAAGTGAG+AGG | - | chr1.3:789268-789287 | None:intergenic | 35.0% | |
| GAATTATCAATGAAATGGGC+TGG | + | chr1.3:788529-788548 | MS.gene64029:CDS | 35.0% | |
| TCAACCAAAGGAGTAAATGT+AGG | - | chr1.3:787938-787957 | None:intergenic | 35.0% | |
| TTAAATATAAGCCGCGCAAA+CGG | - | chr1.3:790334-790353 | None:intergenic | 35.0% | |
| TTATGTGTCTCTCATGGAAA+AGG | + | chr1.3:788806-788825 | MS.gene64029:CDS | 35.0% | |
| TTCACATGAAGAATTCCAAC+TGG | - | chr1.3:789472-789491 | None:intergenic | 35.0% | |
| TTCTCATTCTCAGGATCATT+AGG | - | chr1.3:790139-790158 | None:intergenic | 35.0% | |
| TTGGATGTAAGATTATCAGC+AGG | + | chr1.3:789739-789758 | MS.gene64029:intron | 35.0% | |
| TTTGCGCGGCTTATATTTAA+AGG | + | chr1.3:790334-790353 | MS.gene64029:CDS | 35.0% | |
| ! | GGCATCTATGAGATTTTGTA+TGG | + | chr1.3:788210-788229 | MS.gene64029:intron | 35.0% |
| ! | TAACATTCTAAGGGTGTGTT+TGG | - | chr1.3:789929-789948 | None:intergenic | 35.0% |
| ! | TTTCTTGTTTGCAGCTTGAT+TGG | + | chr1.3:788104-788123 | MS.gene64029:intron | 35.0% |
| ! | TTTGGTGTAAGCTCTTTCAA+TGG | - | chr1.3:790073-790092 | None:intergenic | 35.0% |
| !! | AGTGTATAGCACTGATGAAA+AGG | + | chr1.3:788495-788514 | MS.gene64029:CDS | 35.0% |
| !! | ATATCCTCTCACTTGTTTTC+AGG | + | chr1.3:789261-789280 | MS.gene64029:intron | 35.0% |
| !! | TATGTGGCCTTATTTGAACA+AGG | + | chr1.3:788147-788166 | MS.gene64029:CDS | 35.0% |
| !!! | ACTTTTAGAGTGTGTTTGGA+TGG | + | chr1.3:789764-789783 | MS.gene64029:intron | 35.0% |
| !!! | GGAAACTTTTAGAGTGTGTT+TGG | + | chr1.3:789760-789779 | MS.gene64029:intron | 35.0% |
| AAAGGCTTCAACATTATGCG+CGG | - | chr1.3:788756-788775 | None:intergenic | 40.0% | |
| CAACAGTTCAGGTATTTCTC+CGG | + | chr1.3:788596-788615 | MS.gene64029:intron | 40.0% | |
| CAAGGAAAACTAGGAACCAA+AGG | - | chr1.3:788774-788793 | None:intergenic | 40.0% | |
| CATGAAGCTGAAGATGTTGA+AGG | + | chr1.3:790292-790311 | MS.gene64029:CDS | 40.0% | |
| CCAAACTAGTTAACCACCAT+AGG | - | chr1.3:790019-790038 | None:intergenic | 40.0% | |
| CCTATGGTGGTTAACTAGTT+TGG | + | chr1.3:790016-790035 | MS.gene64029:intron | 40.0% | |
| CTTCAACATCTTCAGCTTCA+TGG | - | chr1.3:790294-790313 | None:intergenic | 40.0% | |
| GAATTCAGAAGACACCGAAA+AGG | + | chr1.3:790222-790241 | MS.gene64029:CDS | 40.0% | |
| GTGCTATAGTATATGCTACC+TGG | - | chr1.3:788992-789011 | None:intergenic | 40.0% | |
| TAACATACACGGTCATAGTC+TGG | - | chr1.3:788019-788038 | None:intergenic | 40.0% | |
| TGCTTCCAGAAATACCCTTA+TGG | + | chr1.3:787984-788003 | MS.gene64029:CDS | 40.0% | |
| TTAGCTTCTTGCTCAACCAA+AGG | - | chr1.3:787950-787969 | None:intergenic | 40.0% | |
| TTGGCGAAACAAGGAAAACT+AGG | - | chr1.3:788783-788802 | None:intergenic | 40.0% | |
| TTTGGAAAGGCTGAGAAGAT+GGG | + | chr1.3:790034-790053 | MS.gene64029:CDS | 40.0% | |
| ! | GGTGGTTAACTAGTTTGGAA+AGG | + | chr1.3:790021-790040 | MS.gene64029:intron | 40.0% |
| ! | TGTCTATTCCTGGTCTTTAC+AGG | + | chr1.3:788961-788980 | MS.gene64029:CDS | 40.0% |
| ! | TTTGGATGGCGTGAATGTTT+TGG | + | chr1.3:789778-789797 | MS.gene64029:intron | 40.0% |
| !! | GGCCTTATTTGAACAAGGTA+TGG | + | chr1.3:788152-788171 | MS.gene64029:intron | 40.0% |
| AAAAGCAAACCACCACTAGC+AGG | - | chr1.3:790262-790281 | None:intergenic | 45.0% | |
| AGGCGAGGAAAGAAAAACCA+AGG | + | chr1.3:790354-790373 | MS.gene64029:CDS | 45.0% | |
| AGGGCCATGAAAAAACCAGT+TGG | + | chr1.3:789454-789473 | MS.gene64029:intron | 45.0% | |
| ATTTGCACCTGTAAGGCCTT+AGG | - | chr1.3:789325-789344 | None:intergenic | 45.0% | |
| CGATTACGGTCCGCTAAATA+TGG | - | chr1.3:788647-788666 | None:intergenic | 45.0% | |
| GCAGATGCAATGTCTATTCC+TGG | + | chr1.3:788951-788970 | MS.gene64029:CDS | 45.0% | |
| GCGCATAATGTTGAAGCCTT+TGG | + | chr1.3:788755-788774 | MS.gene64029:CDS | 45.0% | |
| GCGGCTTATATTTAAAGGCG+AGG | + | chr1.3:790339-790358 | MS.gene64029:CDS | 45.0% | |
| GGCCTTACAGGTGCAAATAA+TGG | + | chr1.3:789327-789346 | MS.gene64029:CDS | 45.0% | |
| GTTTGGAAAGGCTGAGAAGA+TGG | + | chr1.3:790033-790052 | MS.gene64029:intron | 45.0% | |
| TGGACAATCCTGTAAAGACC+AGG | - | chr1.3:788972-788991 | None:intergenic | 45.0% | |
| TGGTCTTTACAGGATTGTCC+AGG | + | chr1.3:788971-788990 | MS.gene64029:CDS | 45.0% | |
| ! | TCTCTGCCACCAACTTTTCA+AGG | + | chr1.3:788369-788388 | MS.gene64029:CDS | 45.0% |
| !!! | TTGCAGCCGCATGTTGATTT+TGG | + | chr1.3:788912-788931 | MS.gene64029:intron | 45.0% |
| ACCACACAAATCCGTTTGCG+CGG | + | chr1.3:790320-790339 | MS.gene64029:CDS | 50.0% | |
| AGAAGACACCGAAAAGGCTC+CGG | + | chr1.3:790228-790247 | MS.gene64029:CDS | 50.0% | |
| CCACGTGACTTCTCATTCTC+AGG | - | chr1.3:790148-790167 | None:intergenic | 50.0% | |
| CCTGAGAATGAGAAGTCACG+TGG | + | chr1.3:790145-790164 | MS.gene64029:CDS | 50.0% | |
| GTCACGTGGAGAGCTTATTG+TGG | + | chr1.3:790159-790178 | MS.gene64029:CDS | 50.0% | |
| TGGATTGCGAGCAACAGTTC+AGG | + | chr1.3:788585-788604 | MS.gene64029:CDS | 50.0% | |
| TTTGTGGCCTAAGGCCTTAC+AGG | + | chr1.3:789315-789334 | MS.gene64029:CDS | 50.0% | |
| ! | TGTTCCTTCCGGAGCCTTTT+CGG | - | chr1.3:790239-790258 | None:intergenic | 50.0% |
| CCACTAGCAGGTGTTCCTTC+CGG | - | chr1.3:790250-790269 | None:intergenic | 55.0% | |
| GAAGGAACACCTGCTAGTGG+TGG | + | chr1.3:790250-790269 | MS.gene64029:CDS | 55.0% | |
| CCGGAAGGAACACCTGCTAG+TGG | + | chr1.3:790247-790266 | MS.gene64029:CDS | 60.0% | |
| GACACCGAAAAGGCTCCGGA+AGG | + | chr1.3:790232-790251 | MS.gene64029:CDS | 60.0% | |
| ! | GCCGCGCAAACGGATTTGTG+TGG | - | chr1.3:790324-790343 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 787932 | 790414 | 787932 | ID=MS.gene64029 |
| chr1.3 | mRNA | 787932 | 790414 | 787932 | ID=MS.gene64029.t1;Parent=MS.gene64029 |
| chr1.3 | exon | 787932 | 788030 | 787932 | ID=MS.gene64029.t1.exon1;Parent=MS.gene64029.t1 |
| chr1.3 | CDS | 787932 | 788030 | 787932 | ID=cds.MS.gene64029.t1;Parent=MS.gene64029.t1 |
| chr1.3 | exon | 788118 | 788168 | 788118 | ID=MS.gene64029.t1.exon2;Parent=MS.gene64029.t1 |
| chr1.3 | CDS | 788118 | 788168 | 788118 | ID=cds.MS.gene64029.t1;Parent=MS.gene64029.t1 |
| chr1.3 | exon | 788267 | 788390 | 788267 | ID=MS.gene64029.t1.exon3;Parent=MS.gene64029.t1 |
| chr1.3 | CDS | 788267 | 788390 | 788267 | ID=cds.MS.gene64029.t1;Parent=MS.gene64029.t1 |
| chr1.3 | exon | 788488 | 788606 | 788488 | ID=MS.gene64029.t1.exon4;Parent=MS.gene64029.t1 |
| chr1.3 | CDS | 788488 | 788606 | 788488 | ID=cds.MS.gene64029.t1;Parent=MS.gene64029.t1 |
| chr1.3 | exon | 788726 | 788827 | 788726 | ID=MS.gene64029.t1.exon5;Parent=MS.gene64029.t1 |
| chr1.3 | CDS | 788726 | 788827 | 788726 | ID=cds.MS.gene64029.t1;Parent=MS.gene64029.t1 |
| chr1.3 | exon | 788918 | 788992 | 788918 | ID=MS.gene64029.t1.exon6;Parent=MS.gene64029.t1 |
| chr1.3 | CDS | 788918 | 788992 | 788918 | ID=cds.MS.gene64029.t1;Parent=MS.gene64029.t1 |
| chr1.3 | exon | 789283 | 789359 | 789283 | ID=MS.gene64029.t1.exon7;Parent=MS.gene64029.t1 |
| chr1.3 | CDS | 789283 | 789359 | 789283 | ID=cds.MS.gene64029.t1;Parent=MS.gene64029.t1 |
| chr1.3 | exon | 789456 | 789702 | 789456 | ID=MS.gene64029.t1.exon8;Parent=MS.gene64029.t1 |
| chr1.3 | CDS | 789456 | 789702 | 789456 | ID=cds.MS.gene64029.t1;Parent=MS.gene64029.t1 |
| chr1.3 | exon | 790034 | 790414 | 790034 | ID=MS.gene64029.t1.exon9;Parent=MS.gene64029.t1 |
| chr1.3 | CDS | 790034 | 790414 | 790034 | ID=cds.MS.gene64029.t1;Parent=MS.gene64029.t1 |
| Gene Sequence |
| Protein sequence |
