Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99802.t1 | XP_003596575.2 | 96.3 | 188 | 7 | 0 | 1 | 188 | 68 | 255 | 5.80E-107 | 396.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99802.t1 | Q9FIT9 | 59.6 | 178 | 67 | 3 | 7 | 179 | 9 | 186 | 7.3e-58 | 224.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99802.t1 | G7IHD0 | 96.3 | 188 | 7 | 0 | 1 | 188 | 1 | 188 | 4.2e-107 | 396.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene99802 | 0.830078 | 3.59E-55 | -1.69E-46 |
| MS.gene049153 | MS.gene99802 | 0.820687 | 6.01E-53 | -1.69E-46 |
| MS.gene049233 | MS.gene99802 | 0.818348 | 2.05E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene99802 | 0.82915 | 6.04E-55 | -1.69E-46 |
| MS.gene049435 | MS.gene99802 | 0.808501 | 3.00E-50 | -1.69E-46 |
| MS.gene049647 | MS.gene99802 | 0.808766 | 2.64E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene99802 | 0.822239 | 2.64E-53 | -1.69E-46 |
| MS.gene050227 | MS.gene99802 | 0.8297 | 4.44E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene99802 | 0.82712 | 1.86E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene99802 | 0.839987 | 1.14E-57 | -1.69E-46 |
| MS.gene050558 | MS.gene99802 | 0.813788 | 2.14E-51 | -1.69E-46 |
| MS.gene050560 | MS.gene99802 | 0.804286 | 2.32E-49 | -1.69E-46 |
| MS.gene050680 | MS.gene99802 | 0.841975 | 3.43E-58 | -1.69E-46 |
| MS.gene050719 | MS.gene99802 | 0.803117 | 4.06E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene99802 | 0.813281 | 2.77E-51 | -1.69E-46 |
| MS.gene050750 | MS.gene99802 | 0.812531 | 4.05E-51 | -1.69E-46 |
| MS.gene050787 | MS.gene99802 | 0.836463 | 9.22E-57 | -1.69E-46 |
| MS.gene050820 | MS.gene99802 | 0.829238 | 5.76E-55 | -1.69E-46 |
| MS.gene050826 | MS.gene99802 | 0.812368 | 4.39E-51 | -1.69E-46 |
| MS.gene050844 | MS.gene99802 | 0.800757 | 1.24E-48 | -1.69E-46 |
| MS.gene050953 | MS.gene99802 | 0.811482 | 6.85E-51 | -1.69E-46 |
| MS.gene051265 | MS.gene99802 | 0.822575 | 2.20E-53 | -1.69E-46 |
| MS.gene051568 | MS.gene99802 | 0.832857 | 7.44E-56 | -1.69E-46 |
| MS.gene051800 | MS.gene99802 | 0.801234 | 9.92E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene99802 | 0.832605 | 8.59E-56 | -1.69E-46 |
| MS.gene051983 | MS.gene99802 | 0.801438 | 9.00E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene99802 | 0.817215 | 3.70E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene99802 | 0.83977 | 1.30E-57 | -1.69E-46 |
| MS.gene052389 | MS.gene99802 | 0.802956 | 4.39E-49 | -1.69E-46 |
| MS.gene052426 | MS.gene99802 | 0.800893 | 1.16E-48 | -1.69E-46 |
| MS.gene053147 | MS.gene99802 | 0.809816 | 1.57E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene99802 | 0.846706 | 1.84E-59 | -1.69E-46 |
| MS.gene053184 | MS.gene99802 | 0.818899 | 1.54E-52 | -1.69E-46 |
| MS.gene053201 | MS.gene99802 | 0.81154 | 6.65E-51 | -1.69E-46 |
| MS.gene053301 | MS.gene99802 | 0.811433 | 7.02E-51 | -1.69E-46 |
| MS.gene053494 | MS.gene99802 | 0.824526 | 7.69E-54 | -1.69E-46 |
| MS.gene053577 | MS.gene99802 | 0.809742 | 1.63E-50 | -1.69E-46 |
| MS.gene053584 | MS.gene99802 | 0.823413 | 1.40E-53 | -1.69E-46 |
| MS.gene053811 | MS.gene99802 | 0.813651 | 2.30E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene99802 | 0.822218 | 2.66E-53 | -1.69E-46 |
| MS.gene05417 | MS.gene99802 | 0.819445 | 1.16E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene99802 | 0.810314 | 1.23E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene99802 | 0.806725 | 7.16E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene99802 | 0.815999 | 6.93E-52 | -1.69E-46 |
| MS.gene054405 | MS.gene99802 | 0.806624 | 7.52E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene99802 | 0.851124 | 1.09E-60 | -1.69E-46 |
| MS.gene054468 | MS.gene99802 | 0.873444 | 1.46E-67 | -1.69E-46 |
| MS.gene054473 | MS.gene99802 | 0.824566 | 7.53E-54 | -1.69E-46 |
| MS.gene054542 | MS.gene99802 | 0.805244 | 1.47E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene99802 | 0.839513 | 1.52E-57 | -1.69E-46 |
| MS.gene054581 | MS.gene99802 | 0.803884 | 2.82E-49 | -1.69E-46 |
| MS.gene054610 | MS.gene99802 | 0.809582 | 1.76E-50 | -1.69E-46 |
| MS.gene054930 | MS.gene99802 | 0.842798 | 2.07E-58 | -1.69E-46 |
| MS.gene05510 | MS.gene99802 | 0.827383 | 1.61E-54 | -1.69E-46 |
| MS.gene055356 | MS.gene99802 | 0.862157 | 6.18E-64 | -1.69E-46 |
| MS.gene055357 | MS.gene99802 | 0.806439 | 8.22E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene99802 | 0.85037 | 1.77E-60 | -1.69E-46 |
| MS.gene055367 | MS.gene99802 | 0.807897 | 4.04E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene99802 | 0.859067 | 5.34E-63 | -1.69E-46 |
| MS.gene055818 | MS.gene99802 | 0.806228 | 9.11E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene99802 | 0.823637 | 1.24E-53 | -1.69E-46 |
| MS.gene05595 | MS.gene99802 | 0.82293 | 1.82E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene99802 | 0.816194 | 6.27E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene99802 | 0.808307 | 3.30E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene99802 | 0.811958 | 5.40E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene99802 | 0.815195 | 1.05E-51 | -1.69E-46 |
| MS.gene057194 | MS.gene99802 | 0.815899 | 7.30E-52 | -1.69E-46 |
| MS.gene057394 | MS.gene99802 | 0.837132 | 6.23E-57 | -1.69E-46 |
| MS.gene057469 | MS.gene99802 | 0.857994 | 1.12E-62 | -1.69E-46 |
| MS.gene05761 | MS.gene99802 | 0.830904 | 2.26E-55 | -1.69E-46 |
| MS.gene057750 | MS.gene99802 | 0.819553 | 1.09E-52 | -1.69E-46 |
| MS.gene057869 | MS.gene99802 | 0.810268 | 1.25E-50 | -1.69E-46 |
| MS.gene057929 | MS.gene99802 | 0.808299 | 3.32E-50 | -1.69E-46 |
| MS.gene058139 | MS.gene99802 | 0.801717 | 7.89E-49 | -1.69E-46 |
| MS.gene058146 | MS.gene99802 | 0.820173 | 7.89E-53 | -1.69E-46 |
| MS.gene058736 | MS.gene99802 | 0.810526 | 1.10E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene99802 | 0.863454 | 2.46E-64 | -1.69E-46 |
| MS.gene059161 | MS.gene99802 | 0.810293 | 1.24E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene99802 | 0.835939 | 1.25E-56 | -1.69E-46 |
| MS.gene05973 | MS.gene99802 | 0.80549 | 1.30E-49 | -1.69E-46 |
| MS.gene059789 | MS.gene99802 | 0.80707 | 6.05E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene99802 | 0.802079 | 6.65E-49 | -1.69E-46 |
| MS.gene060137 | MS.gene99802 | -0.807767 | 4.30E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene99802 | 0.823571 | 1.29E-53 | -1.69E-46 |
| MS.gene06052 | MS.gene99802 | 0.829037 | 6.44E-55 | -1.69E-46 |
| MS.gene060683 | MS.gene99802 | 0.83193 | 1.26E-55 | -1.69E-46 |
| MS.gene060685 | MS.gene99802 | 0.826163 | 3.15E-54 | -1.69E-46 |
| MS.gene060802 | MS.gene99802 | 0.817327 | 3.49E-52 | -1.69E-46 |
| MS.gene060942 | MS.gene99802 | 0.804174 | 2.45E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene99802 | 0.837575 | 4.79E-57 | -1.69E-46 |
| MS.gene061114 | MS.gene99802 | -0.820344 | 7.21E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99802.t1 | MTR_2g082180 | 96.277 | 188 | 7 | 0 | 1 | 188 | 1 | 188 | 1.01e-136 | 379 |
| MS.gene99802.t1 | MTR_0769s0020 | 96.512 | 86 | 3 | 0 | 103 | 188 | 5 | 90 | 2.07e-58 | 178 |
| MS.gene99802.t1 | MTR_4g091590 | 28.431 | 102 | 67 | 1 | 85 | 180 | 52 | 153 | 1.13e-13 | 65.9 |
| MS.gene99802.t1 | MTR_6g061940 | 28.244 | 131 | 82 | 3 | 60 | 180 | 25 | 153 | 1.37e-13 | 65.5 |
| MS.gene99802.t1 | MTR_4g088490 | 28.431 | 102 | 67 | 1 | 85 | 180 | 54 | 155 | 3.04e-13 | 64.7 |
| MS.gene99802.t1 | MTR_6g061850 | 27.481 | 131 | 83 | 3 | 60 | 180 | 25 | 153 | 6.00e-13 | 63.9 |
| MS.gene99802.t1 | MTR_4g088475 | 27.632 | 152 | 94 | 5 | 52 | 188 | 5 | 155 | 3.71e-12 | 63.2 |
| MS.gene99802.t1 | MTR_5g081530 | 26.271 | 118 | 79 | 2 | 60 | 177 | 25 | 134 | 6.68e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99802.t1 | AT5G54660 | 59.551 | 178 | 67 | 3 | 7 | 179 | 9 | 186 | 1.34e-73 | 220 |
| MS.gene99802.t1 | AT1G53540 | 27.273 | 121 | 87 | 1 | 59 | 179 | 24 | 143 | 1.26e-14 | 68.6 |
| MS.gene99802.t1 | AT1G07400 | 25.850 | 147 | 96 | 4 | 52 | 187 | 5 | 149 | 2.38e-12 | 62.4 |
| MS.gene99802.t1 | AT1G59860 | 27.723 | 101 | 72 | 1 | 87 | 187 | 48 | 147 | 2.49e-12 | 62.4 |
| MS.gene99802.t1 | AT4G10250 | 30.000 | 140 | 81 | 6 | 47 | 179 | 35 | 164 | 5.32e-12 | 62.0 |
Find 41 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAAACACACCATTTATT+TGG | 0.108653 | 2.3:+14879628 | None:intergenic |
| CTTCTGATGCATTTCCTCTA+TGG | 0.258229 | 2.3:-14879495 | MS.gene99802:CDS |
| TGTGGTCATTGGTGGGAAAA+TGG | 0.259017 | 2.3:-14877891 | MS.gene99802:CDS |
| ATTCAAGTCCATGTTGATAA+AGG | 0.284747 | 2.3:-14877978 | MS.gene99802:CDS |
| TAAAATGCCAAAGATCAAAA+AGG | 0.291755 | 2.3:-14877784 | MS.gene99802:CDS |
| ATGATCAAACTCCAAATAAA+TGG | 0.295652 | 2.3:-14879639 | MS.gene99802:CDS |
| AATAAATGGTGTGTTTCATT+AGG | 0.320504 | 2.3:-14879625 | MS.gene99802:CDS |
| TTCTGATGCATTTCCTCTAT+GGG | 0.421633 | 2.3:-14879494 | MS.gene99802:CDS |
| TTCAAGTCCATGTTGATAAA+GGG | 0.436330 | 2.3:-14877977 | MS.gene99802:CDS |
| TTCTTCCAATCTGCATCCTC+TGG | 0.460108 | 2.3:+14877846 | None:intergenic |
| GATGCCAATCCACAGTGGTT+TGG | 0.466039 | 2.3:+14879428 | None:intergenic |
| GAGACTCAAAGACAAATGAT+TGG | 0.472039 | 2.3:-14877917 | MS.gene99802:CDS |
| AAGAATTTCCCAAACAACAT+TGG | 0.483083 | 2.3:+14879523 | None:intergenic |
| AGATGCCAGAGGATGCAGAT+TGG | 0.502624 | 2.3:-14877851 | MS.gene99802:CDS |
| GGGAAAATGGATATGTAAGA+AGG | 0.521141 | 2.3:-14877878 | MS.gene99802:CDS |
| ATTGGAGGTGTGGTCATTGG+TGG | 0.523846 | 2.3:-14877899 | MS.gene99802:CDS |
| GTGGAGAAGAAATTAATGGC+TGG | 0.527944 | 2.3:-14879691 | None:intergenic |
| AATGGCTGGTTCTAACAAGA+AGG | 0.530014 | 2.3:-14879677 | MS.gene99802:CDS |
| CCAATCCACAGTGGTTTGGT+TGG | 0.532581 | 2.3:+14879432 | None:intergenic |
| CCAACCAAACCACTGTGGAT+TGG | 0.534059 | 2.3:-14879432 | MS.gene99802:CDS |
| ATGATTGGAGGTGTGGTCAT+TGG | 0.535519 | 2.3:-14877902 | MS.gene99802:CDS |
| CCACCTTCCCTTTATCAACA+TGG | 0.538491 | 2.3:+14877970 | None:intergenic |
| AAGGGTTCTGATCATGCTCA+AGG | 0.575715 | 2.3:-14877765 | MS.gene99802:CDS |
| TGGTTCTAACAAGAAGGTTG+AGG | 0.580733 | 2.3:-14879671 | MS.gene99802:CDS |
| CATAGAGGAAATGCATCAGA+AGG | 0.582851 | 2.3:+14879496 | None:intergenic |
| TCTGACTCAAACTCCCATAG+AGG | 0.584106 | 2.3:+14879481 | None:intergenic |
| AAGACAAATGATTGGAGGTG+TGG | 0.588863 | 2.3:-14877909 | MS.gene99802:CDS |
| TTGGAGGTGTGGTCATTGGT+GGG | 0.595589 | 2.3:-14877898 | MS.gene99802:CDS |
| ATGTTAAAAGCTGAAATACC+AGG | 0.596563 | 2.3:-14879388 | MS.gene99802:intron |
| GACTAATCCAACAGTTCACA+AGG | 0.599483 | 2.3:-14879572 | MS.gene99802:CDS |
| ACTCAAAGACAAATGATTGG+AGG | 0.607196 | 2.3:-14877914 | MS.gene99802:CDS |
| GATTGGCATCACACAGATGA+GGG | 0.616017 | 2.3:-14879415 | MS.gene99802:CDS |
| GGGAAGGTGGTGGAAATCAG+TGG | 0.621675 | 2.3:-14877957 | MS.gene99802:CDS |
| TGTTGATAAAGGGAAGGTGG+TGG | 0.624580 | 2.3:-14877967 | MS.gene99802:CDS |
| CCATGTTGATAAAGGGAAGG+TGG | 0.624798 | 2.3:-14877970 | MS.gene99802:CDS |
| GGATTGGCATCACACAGATG+AGG | 0.649591 | 2.3:-14879416 | MS.gene99802:CDS |
| TGGTGGAAATCAGTGGACAA+TGG | 0.653289 | 2.3:-14877950 | MS.gene99802:CDS |
| AGTCCATGTTGATAAAGGGA+AGG | 0.656983 | 2.3:-14877973 | MS.gene99802:CDS |
| AAGAAGGCTTGAGATGCCAG+AGG | 0.727204 | 2.3:-14877862 | MS.gene99802:CDS |
| AAGTTCCAACCAAACCACTG+TGG | 0.744020 | 2.3:-14879437 | MS.gene99802:CDS |
| TGTGTGATGCCAATCCACAG+TGG | 0.796798 | 2.3:+14879423 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAATAAAAGTTTTTTTTT+AGG | - | chr2.3:14878142-14878161 | MS.gene99802:intron | 10.0% |
| !!! | ATAATTCATATGTTTTAATA+TGG | - | chr2.3:14878625-14878644 | MS.gene99802:intron | 10.0% |
| !!! | GAAATAAAAGTTTTTTTTTA+GGG | - | chr2.3:14878143-14878162 | MS.gene99802:intron | 10.0% |
| !!! | TTTATTTCTCTTATTTTATT+AGG | + | chr2.3:14878131-14878150 | None:intergenic | 10.0% |
| !! | AGTAAAATATATCTCAAAAT+TGG | - | chr2.3:14878395-14878414 | MS.gene99802:intron | 15.0% |
| !! | AGTCCTTATATATATTTAAA+GGG | - | chr2.3:14879213-14879232 | MS.gene99802:intron | 15.0% |
| !! | TAGTCCTTATATATATTTAA+AGG | - | chr2.3:14879212-14879231 | MS.gene99802:intron | 15.0% |
| !! | TGTTATTATTACATATAAAC+AGG | - | chr2.3:14878493-14878512 | MS.gene99802:intron | 15.0% |
| !!! | CTTTGTTTTGATAATAAATT+TGG | - | chr2.3:14878655-14878674 | MS.gene99802:intron | 15.0% |
| !! | AAAATATATCTCAAAATTGG+AGG | - | chr2.3:14878398-14878417 | MS.gene99802:intron | 20.0% |
| !! | AAATTGACAATGTAAAGTTA+AGG | + | chr2.3:14878277-14878296 | None:intergenic | 20.0% |
| !! | AATTGACAATGTAAAGTTAA+GGG | + | chr2.3:14878276-14878295 | None:intergenic | 20.0% |
| !! | AGAATTCTAAGCAAAATTAT+AGG | + | chr2.3:14879340-14879359 | None:intergenic | 20.0% |
| !! | GAACTATTTATTAAATTTGC+AGG | - | chr2.3:14878420-14878439 | MS.gene99802:intron | 20.0% |
| !! | GAATTCTAAGCAAAATTATA+GGG | + | chr2.3:14879339-14879358 | None:intergenic | 20.0% |
| !! | TGACCCTTTAAATATATATA+AGG | + | chr2.3:14879219-14879238 | None:intergenic | 20.0% |
| !! | TTTAAAAACTAGCTATTAAG+GGG | + | chr2.3:14878859-14878878 | None:intergenic | 20.0% |
| !!! | AATTCAAATTCTTAGGTTTT+AGG | + | chr2.3:14878749-14878768 | None:intergenic | 20.0% |
| !!! | CAAAATAAAGAGATTTTATG+AGG | - | chr2.3:14878686-14878705 | MS.gene99802:intron | 20.0% |
| !!! | CAAGTTTTTAAATATGGAAA+GGG | + | chr2.3:14879271-14879290 | None:intergenic | 20.0% |
| !!! | CACAAAATTATTTGAAACAA+GGG | - | chr2.3:14878443-14878462 | MS.gene99802:intron | 20.0% |
| !!! | CATTCACATTTTATATGATA+CGG | + | chr2.3:14879146-14879165 | None:intergenic | 20.0% |
| !!! | CTTTAAAAACTAGCTATTAA+GGG | + | chr2.3:14878860-14878879 | None:intergenic | 20.0% |
| ! | AAAATGCCAAAGATCAAAAA+GGG | - | chr2.3:14879654-14879673 | MS.gene99802:CDS | 25.0% |
| ! | AATAAATGGTGTGTTTCATT+AGG | - | chr2.3:14877812-14877831 | MS.gene99802:CDS | 25.0% |
| ! | AATGAAACACACCATTTATT+TGG | + | chr2.3:14877812-14877831 | None:intergenic | 25.0% |
| ! | AATTTGAATTTCCTTACCAT+AGG | - | chr2.3:14878759-14878778 | MS.gene99802:intron | 25.0% |
| ! | ATATCTTATACTATTCCATG+TGG | + | chr2.3:14878812-14878831 | None:intergenic | 25.0% |
| ! | ATGATCAAACTCCAAATAAA+TGG | - | chr2.3:14877798-14877817 | MS.gene99802:CDS | 25.0% |
| ! | ATTTGAATTTCCTTACCATA+GGG | - | chr2.3:14878760-14878779 | MS.gene99802:intron | 25.0% |
| ! | GAAAGATTCACTATATAACA+AGG | + | chr2.3:14878521-14878540 | None:intergenic | 25.0% |
| ! | GAATAGTATAAGATATTTGC+TGG | - | chr2.3:14878816-14878835 | MS.gene99802:intron | 25.0% |
| ! | GTAAGGAAATTCAAATTCTT+AGG | + | chr2.3:14878756-14878775 | None:intergenic | 25.0% |
| ! | TAAAATGCCAAAGATCAAAA+AGG | - | chr2.3:14879653-14879672 | MS.gene99802:CDS | 25.0% |
| ! | TATCTTATACTATTCCATGT+GGG | + | chr2.3:14878811-14878830 | None:intergenic | 25.0% |
| ! | TGATAAGTATCTAAGAACTT+GGG | + | chr2.3:14879119-14879138 | None:intergenic | 25.0% |
| ! | TTAAAAACTAGCTATTAAGG+GGG | + | chr2.3:14878858-14878877 | None:intergenic | 25.0% |
| ! | TTTAACATCATACAGATGAA+TGG | + | chr2.3:14878190-14878209 | None:intergenic | 25.0% |
| !! | CCTTTAAAAACTAGCTATTA+AGG | + | chr2.3:14878861-14878880 | None:intergenic | 25.0% |
| !! | GCAAGTTTTTAAATATGGAA+AGG | + | chr2.3:14879272-14879291 | None:intergenic | 25.0% |
| !! | GCACAAAATTATTTGAAACA+AGG | - | chr2.3:14878442-14878461 | MS.gene99802:intron | 25.0% |
| !! | TGTGTGCAAGTTTTTAAATA+TGG | + | chr2.3:14879277-14879296 | None:intergenic | 25.0% |
| !! | TTGGATAAGGAAATTTTATG+AGG | - | chr2.3:14878585-14878604 | MS.gene99802:intron | 25.0% |
| !!! | CCTTAATAGCTAGTTTTTAA+AGG | - | chr2.3:14878858-14878877 | MS.gene99802:intron | 25.0% |
| !!! | TACTTACTCTTTTTTTTTCC+AGG | + | chr2.3:14878379-14878398 | None:intergenic | 25.0% |
| !!! | TATTTTTCAAAACAGGAACT+GGG | - | chr2.3:14879427-14879446 | MS.gene99802:CDS | 25.0% |
| !!! | TTATTTTTCAAAACAGGAAC+TGG | - | chr2.3:14879426-14879445 | MS.gene99802:CDS | 25.0% |
| !!! | TTCCTGTTTTGAAAAATAAC+TGG | + | chr2.3:14879425-14879444 | None:intergenic | 25.0% |
| !!! | TTTTTAGTCCAATGTTGTTT+GGG | - | chr2.3:14877906-14877925 | MS.gene99802:CDS | 25.0% |
| AAGAATTTCCCAAACAACAT+TGG | + | chr2.3:14877917-14877936 | None:intergenic | 30.0% | |
| ATGAGGCAATTGAAAATACT+AGG | + | chr2.3:14879369-14879388 | None:intergenic | 30.0% | |
| ATGAGGTAATGTAATTTCAG+AGG | - | chr2.3:14878602-14878621 | MS.gene99802:intron | 30.0% | |
| ATGTTAAAAGCTGAAATACC+AGG | - | chr2.3:14878049-14878068 | MS.gene99802:intron | 30.0% | |
| GATAAGTATCTAAGAACTTG+GGG | + | chr2.3:14879118-14879137 | None:intergenic | 30.0% | |
| GTGATAAGTATCTAAGAACT+TGG | + | chr2.3:14879120-14879139 | None:intergenic | 30.0% | |
| ! | ATTCAAGTCCATGTTGATAA+AGG | - | chr2.3:14879459-14879478 | MS.gene99802:CDS | 30.0% |
| ! | CACATTTTATATGATACGGA+AGG | + | chr2.3:14879142-14879161 | None:intergenic | 30.0% |
| ! | GCATTGTAATATTTGTTACC+TGG | + | chr2.3:14878070-14878089 | None:intergenic | 30.0% |
| ! | TTCAAGTCCATGTTGATAAA+GGG | - | chr2.3:14879460-14879479 | MS.gene99802:CDS | 30.0% |
| !! | CTTTTTAGTCCAATGTTGTT+TGG | - | chr2.3:14877905-14877924 | MS.gene99802:CDS | 30.0% |
| !! | GCATCATCATTTTTAAATCC+TGG | - | chr2.3:14878358-14878377 | MS.gene99802:intron | 30.0% |
| !!! | CACCAGTTATTTTTCAAAAC+AGG | - | chr2.3:14879420-14879439 | MS.gene99802:CDS | 30.0% |
| AAAAATGGCAATACCTACGA+AGG | - | chr2.3:14878904-14878923 | MS.gene99802:intron | 35.0% | |
| AAAATGGCAATACCTACGAA+GGG | - | chr2.3:14878905-14878924 | MS.gene99802:intron | 35.0% | |
| ACTCAAAGACAAATGATTGG+AGG | - | chr2.3:14879523-14879542 | MS.gene99802:CDS | 35.0% | |
| ATACTATTCCATGTGGGATT+TGG | + | chr2.3:14878805-14878824 | None:intergenic | 35.0% | |
| ATAGGGACTTCAGTATTATG+GGG | - | chr2.3:14879004-14879023 | MS.gene99802:intron | 35.0% | |
| ATCAAGTAGTATGGGATGTT+CGG | - | chr2.3:14879041-14879060 | MS.gene99802:intron | 35.0% | |
| ATTTCCTTACCATAGGGATT+TGG | - | chr2.3:14878766-14878785 | MS.gene99802:intron | 35.0% | |
| CAAAATTTAGCTAGCGTGTT+TGG | - | chr2.3:14878566-14878585 | MS.gene99802:intron | 35.0% | |
| CCTTAGAAGCTAGTTATCAA+CGG | + | chr2.3:14879088-14879107 | None:intergenic | 35.0% | |
| CTTAGAAGCTAGTTATCAAC+GGG | + | chr2.3:14879087-14879106 | None:intergenic | 35.0% | |
| GAGACTCAAAGACAAATGAT+TGG | - | chr2.3:14879520-14879539 | MS.gene99802:CDS | 35.0% | |
| GATAGGGACTTCAGTATTAT+GGG | - | chr2.3:14879003-14879022 | MS.gene99802:intron | 35.0% | |
| GGGAAAATGGATATGTAAGA+AGG | - | chr2.3:14879559-14879578 | MS.gene99802:CDS | 35.0% | |
| GTTAATCATCACACAGATGA+AGG | - | chr2.3:14878211-14878230 | MS.gene99802:intron | 35.0% | |
| TACTATTCCATGTGGGATTT+GGG | + | chr2.3:14878804-14878823 | None:intergenic | 35.0% | |
| TTAGAAGCTAGTTATCAACG+GGG | + | chr2.3:14879086-14879105 | None:intergenic | 35.0% | |
| TTCTGATGCATTTCCTCTAT+GGG | - | chr2.3:14877943-14877962 | MS.gene99802:CDS | 35.0% | |
| ! | ATTTCCACTAAGAGTGTGTT+TGG | + | chr2.3:14879392-14879411 | None:intergenic | 35.0% |
| ! | TCAGAACCCTTTTTGATCTT+TGG | + | chr2.3:14879663-14879682 | None:intergenic | 35.0% |
| !! | CGTTGATAACTAGCTTCTAA+GGG | - | chr2.3:14879086-14879105 | MS.gene99802:intron | 35.0% |
| !!! | ATTTTTGAGTCATCGACATG+GGG | + | chr2.3:14878890-14878909 | None:intergenic | 35.0% |
| !!! | CATTTTTGAGTCATCGACAT+GGG | + | chr2.3:14878891-14878910 | None:intergenic | 35.0% |
| AAATGGCAATACCTACGAAG+GGG | - | chr2.3:14878906-14878925 | MS.gene99802:intron | 40.0% | |
| AAGACAAATGATTGGAGGTG+TGG | - | chr2.3:14879528-14879547 | MS.gene99802:CDS | 40.0% | |
| AAGTCCCACATCAAGTAGTA+TGG | - | chr2.3:14879032-14879051 | MS.gene99802:intron | 40.0% | |
| ACATCCCATACTACTTGATG+TGG | + | chr2.3:14879040-14879059 | None:intergenic | 40.0% | |
| ACTACCAAATCCCTATGGTA+AGG | + | chr2.3:14878773-14878792 | None:intergenic | 40.0% | |
| AGTCCCACATCAAGTAGTAT+GGG | - | chr2.3:14879033-14879052 | MS.gene99802:intron | 40.0% | |
| CATAGAGGAAATGCATCAGA+AGG | + | chr2.3:14877944-14877963 | None:intergenic | 40.0% | |
| CATCCCATACTACTTGATGT+GGG | + | chr2.3:14879039-14879058 | None:intergenic | 40.0% | |
| CCAAAAACCTTGTGAACTGT+TGG | + | chr2.3:14877875-14877894 | None:intergenic | 40.0% | |
| CCATGTCGATGACTCAAAAA+TGG | - | chr2.3:14878889-14878908 | MS.gene99802:intron | 40.0% | |
| CTTCTGATGCATTTCCTCTA+TGG | - | chr2.3:14877942-14877961 | MS.gene99802:CDS | 40.0% | |
| GACTAATCCAACAGTTCACA+AGG | - | chr2.3:14877865-14877884 | MS.gene99802:CDS | 40.0% | |
| GGATAGGGACTTCAGTATTA+TGG | - | chr2.3:14879002-14879021 | MS.gene99802:intron | 40.0% | |
| TCATCCAAACACACTCTTAG+TGG | - | chr2.3:14879385-14879404 | MS.gene99802:intron | 40.0% | |
| TTAGCTAGCGTGTTTGGATA+AGG | - | chr2.3:14878572-14878591 | MS.gene99802:intron | 40.0% | |
| ! | ACCATAGGGATTTGGTAGTA+TGG | - | chr2.3:14878774-14878793 | MS.gene99802:intron | 40.0% |
| ! | ACTAAGAGTGTGTTTGGATG+AGG | + | chr2.3:14879386-14879405 | None:intergenic | 40.0% |
| ! | AGTCCATGTTGATAAAGGGA+AGG | - | chr2.3:14879464-14879483 | MS.gene99802:CDS | 40.0% |
| ! | CATAGGGATTTGGTAGTATG+GGG | - | chr2.3:14878776-14878795 | MS.gene99802:intron | 40.0% |
| ! | CCAACAGTTCACAAGGTTTT+TGG | - | chr2.3:14877872-14877891 | MS.gene99802:CDS | 40.0% |
| ! | CCATAGGGATTTGGTAGTAT+GGG | - | chr2.3:14878775-14878794 | MS.gene99802:intron | 40.0% |
| ! | GATAACTAGCTTCTAAGGGA+GGG | - | chr2.3:14879090-14879109 | MS.gene99802:intron | 40.0% |
| ! | GATATTTGCTGGAAGTAGCT+TGG | - | chr2.3:14878827-14878846 | MS.gene99802:intron | 40.0% |
| ! | TAGAACCATAGAAGTGCATG+AGG | - | chr2.3:14878543-14878562 | MS.gene99802:intron | 40.0% |
| ! | TGATAACTAGCTTCTAAGGG+AGG | - | chr2.3:14879089-14879108 | MS.gene99802:intron | 40.0% |
| ! | TTTTGCCTCATGCACTTCTA+TGG | + | chr2.3:14878551-14878570 | None:intergenic | 40.0% |
| !! | ATACTCTACGGTGCTATACT+TGG | + | chr2.3:14878946-14878965 | None:intergenic | 40.0% |
| !! | CCGTTGATAACTAGCTTCTA+AGG | - | chr2.3:14879085-14879104 | MS.gene99802:intron | 40.0% |
| !! | TACTCTACGGTGCTATACTT+GGG | + | chr2.3:14878945-14878964 | None:intergenic | 40.0% |
| !! | TATGGAAAGGGCACTTGTTA+AGG | + | chr2.3:14879259-14879278 | None:intergenic | 40.0% |
| !! | TGGTTCTAACAAGAAGGTTG+AGG | - | chr2.3:14877766-14877785 | MS.gene99802:CDS | 40.0% |
| !!! | CCATTTTTGAGTCATCGACA+TGG | + | chr2.3:14878892-14878911 | None:intergenic | 40.0% |
| !!! | GTTCACAAGGTTTTTGGTGA+TGG | - | chr2.3:14877878-14877897 | MS.gene99802:CDS | 40.0% |
| AAGTTCCAACCAAACCACTG+TGG | - | chr2.3:14878000-14878019 | MS.gene99802:intron | 45.0% | |
| CCACCTTCCCTTTATCAACA+TGG | + | chr2.3:14879470-14879489 | None:intergenic | 45.0% | |
| CCCATACTACCAAATCCCTA+TGG | + | chr2.3:14878778-14878797 | None:intergenic | 45.0% | |
| GATTGGCATCACACAGATGA+GGG | - | chr2.3:14878022-14878041 | MS.gene99802:intron | 45.0% | |
| TCAGAGACGTTGCTAGGATA+GGG | - | chr2.3:14878987-14879006 | MS.gene99802:intron | 45.0% | |
| TCTGACTCAAACTCCCATAG+AGG | + | chr2.3:14877959-14877978 | None:intergenic | 45.0% | |
| TGGTGGAAATCAGTGGACAA+TGG | - | chr2.3:14879487-14879506 | MS.gene99802:CDS | 45.0% | |
| TGTGGTCATTGGTGGGAAAA+TGG | - | chr2.3:14879546-14879565 | MS.gene99802:CDS | 45.0% | |
| TTCTTCCAATCTGCATCCTC+TGG | + | chr2.3:14879594-14879613 | None:intergenic | 45.0% | |
| ! | AAGGGTTCTGATCATGCTCA+AGG | - | chr2.3:14879672-14879691 | MS.gene99802:CDS | 45.0% |
| ! | ATGATTGGAGGTGTGGTCAT+TGG | - | chr2.3:14879535-14879554 | MS.gene99802:CDS | 45.0% |
| ! | CCATGTTGATAAAGGGAAGG+TGG | - | chr2.3:14879467-14879486 | MS.gene99802:CDS | 45.0% |
| ! | GATGTTCGGTGAAAGTAGCT+TGG | - | chr2.3:14879055-14879074 | MS.gene99802:intron | 45.0% |
| ! | TGTTGATAAAGGGAAGGTGG+TGG | - | chr2.3:14879470-14879489 | MS.gene99802:CDS | 45.0% |
| !! | TTTTTAGTCAGCCCCTTCGT+AGG | + | chr2.3:14878920-14878939 | None:intergenic | 45.0% |
| !! | AAAATTTGAAAAATTAAATA+GGG | + | chr2.3:14879303-14879322 | None:intergenic | 5.0% |
| !! | TAAAATTTGAAAAATTAAAT+AGG | + | chr2.3:14879304-14879323 | None:intergenic | 5.0% |
| AAGAAGGCTTGAGATGCCAG+AGG | - | chr2.3:14879575-14879594 | MS.gene99802:CDS | 50.0% | |
| AGATGCCAGAGGATGCAGAT+TGG | - | chr2.3:14879586-14879605 | MS.gene99802:CDS | 50.0% | |
| ATCCTAGCAACGTCTCTGAG+AGG | + | chr2.3:14878986-14879005 | None:intergenic | 50.0% | |
| CCAACCAAACCACTGTGGAT+TGG | - | chr2.3:14878005-14878024 | MS.gene99802:intron | 50.0% | |
| CTCAGAGACGTTGCTAGGAT+AGG | - | chr2.3:14878986-14879005 | MS.gene99802:intron | 50.0% | |
| GATGCCAATCCACAGTGGTT+TGG | + | chr2.3:14878012-14878031 | None:intergenic | 50.0% | |
| TGTGTGATGCCAATCCACAG+TGG | + | chr2.3:14878017-14878036 | None:intergenic | 50.0% | |
| ! | ATTGGAGGTGTGGTCATTGG+TGG | - | chr2.3:14879538-14879557 | MS.gene99802:CDS | 50.0% |
| ! | GGATTGGCATCACACAGATG+AGG | - | chr2.3:14878021-14878040 | MS.gene99802:intron | 50.0% |
| ! | TTGGAGGTGTGGTCATTGGT+GGG | - | chr2.3:14879539-14879558 | MS.gene99802:CDS | 50.0% |
| !! | CCAATCCACAGTGGTTTGGT+TGG | + | chr2.3:14878008-14878027 | None:intergenic | 50.0% |
| TCCCGACGGCTGATACTCTA+CGG | + | chr2.3:14878958-14878977 | None:intergenic | 55.0% | |
| TCTGAGAGGCAACATCCCGA+CGG | + | chr2.3:14878972-14878991 | None:intergenic | 55.0% | |
| TGCCTCTCAGAGACGTTGCT+AGG | - | chr2.3:14878981-14879000 | MS.gene99802:intron | 55.0% | |
| ! | ACCGTAGAGTATCAGCCGTC+GGG | - | chr2.3:14878954-14878973 | MS.gene99802:intron | 55.0% |
| ! | CACCGTAGAGTATCAGCCGT+CGG | - | chr2.3:14878953-14878972 | MS.gene99802:intron | 55.0% |
| !! | GGGAAGGTGGTGGAAATCAG+TGG | - | chr2.3:14879480-14879499 | MS.gene99802:CDS | 55.0% |
| ! | TGGGGTGCCCAAATCCCACA+TGG | - | chr2.3:14878794-14878813 | MS.gene99802:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 14877761 | 14879698 | 14877761 | ID=MS.gene99802 |
| chr2.3 | mRNA | 14877761 | 14879698 | 14877761 | ID=MS.gene99802.t1;Parent=MS.gene99802 |
| chr2.3 | exon | 14879389 | 14879698 | 14879389 | ID=MS.gene99802.t1.exon1;Parent=MS.gene99802.t1 |
| chr2.3 | CDS | 14879389 | 14879698 | 14879389 | ID=cds.MS.gene99802.t1;Parent=MS.gene99802.t1 |
| chr2.3 | exon | 14877761 | 14878017 | 14877761 | ID=MS.gene99802.t1.exon2;Parent=MS.gene99802.t1 |
| chr2.3 | CDS | 14877761 | 14878017 | 14877761 | ID=cds.MS.gene99802.t1;Parent=MS.gene99802.t1 |
| Gene Sequence |
| Protein sequence |
