Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24288.t1 | XP_013466090.1 | 81.8 | 225 | 15 | 1 | 1 | 199 | 88 | 312 | 5.20E-98 | 367.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24288.t1 | Q8GUH2 | 32.1 | 243 | 119 | 8 | 2 | 199 | 86 | 327 | 6.0e-18 | 92.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24288.t1 | A0A072VEU8 | 81.8 | 225 | 15 | 1 | 1 | 199 | 118 | 342 | 3.8e-98 | 367.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene24288 | 0.804102 | 2.54E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene24288 | 0.817602 | 3.03E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene24288 | 0.803759 | 2.99E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene24288 | 0.844702 | 6.42E-59 | -1.69E-46 |
| MS.gene050680 | MS.gene24288 | 0.810423 | 1.16E-50 | -1.69E-46 |
| MS.gene050787 | MS.gene24288 | 0.819507 | 1.12E-52 | -1.69E-46 |
| MS.gene050820 | MS.gene24288 | 0.802927 | 4.45E-49 | -1.69E-46 |
| MS.gene051568 | MS.gene24288 | 0.828103 | 1.08E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene24288 | 0.812352 | 4.43E-51 | -1.69E-46 |
| MS.gene052042 | MS.gene24288 | 0.80777 | 4.30E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene24288 | 0.813822 | 2.11E-51 | -1.69E-46 |
| MS.gene052677 | MS.gene24288 | 0.800314 | 1.53E-48 | -1.69E-46 |
| MS.gene053301 | MS.gene24288 | 0.892123 | 2.12E-74 | -1.69E-46 |
| MS.gene053584 | MS.gene24288 | 0.813473 | 2.51E-51 | -1.69E-46 |
| MS.gene05417 | MS.gene24288 | 0.82936 | 5.38E-55 | -1.69E-46 |
| MS.gene054467 | MS.gene24288 | 0.835664 | 1.47E-56 | -1.69E-46 |
| MS.gene054468 | MS.gene24288 | 0.830072 | 3.61E-55 | -1.69E-46 |
| MS.gene054559 | MS.gene24288 | 0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene24288 | 0.814548 | 1.46E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene24288 | 0.824606 | 7.37E-54 | -1.69E-46 |
| MS.gene055356 | MS.gene24288 | 0.816776 | 4.64E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene24288 | 0.802207 | 6.26E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene24288 | 0.850087 | 2.13E-60 | -1.69E-46 |
| MS.gene055926 | MS.gene24288 | 0.831652 | 1.48E-55 | -1.69E-46 |
| MS.gene057194 | MS.gene24288 | 0.814782 | 1.29E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene24288 | 0.820136 | 8.05E-53 | -1.69E-46 |
| MS.gene05761 | MS.gene24288 | 0.832812 | 7.63E-56 | -1.69E-46 |
| MS.gene059128 | MS.gene24288 | 0.822667 | 2.10E-53 | -1.69E-46 |
| MS.gene059161 | MS.gene24288 | 0.809068 | 2.27E-50 | -1.69E-46 |
| MS.gene059609 | MS.gene24288 | 0.825109 | 5.61E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene24288 | 0.821599 | 3.71E-53 | -1.69E-46 |
| MS.gene060137 | MS.gene24288 | -0.810778 | 9.73E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene24288 | 0.813698 | 2.24E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene24288 | 0.834575 | 2.77E-56 | -1.69E-46 |
| MS.gene060683 | MS.gene24288 | 0.816726 | 4.77E-52 | -1.69E-46 |
| MS.gene060685 | MS.gene24288 | 0.810757 | 9.84E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene24288 | 0.83709 | 6.38E-57 | -1.69E-46 |
| MS.gene060803 | MS.gene24288 | 0.807617 | 4.63E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene24288 | 0.821266 | 4.42E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24288.t1 | MTR_1g022190 | 83.111 | 225 | 12 | 1 | 1 | 199 | 88 | 312 | 1.83e-133 | 377 |
| MS.gene24288.t1 | MTR_1g022190 | 83.111 | 225 | 12 | 1 | 1 | 199 | 113 | 337 | 2.11e-133 | 377 |
| MS.gene24288.t1 | MTR_1g022190 | 83.111 | 225 | 12 | 1 | 1 | 199 | 118 | 342 | 2.32e-133 | 377 |
| MS.gene24288.t1 | MTR_1g022190 | 93.960 | 149 | 9 | 0 | 1 | 149 | 113 | 261 | 1.01e-100 | 292 |
| MS.gene24288.t1 | MTR_4g070020 | 37.553 | 237 | 104 | 7 | 1 | 199 | 81 | 311 | 2.64e-43 | 147 |
| MS.gene24288.t1 | MTR_4g070020 | 46.853 | 143 | 63 | 3 | 3 | 133 | 83 | 224 | 7.22e-38 | 131 |
| MS.gene24288.t1 | MTR_8g028630 | 35.874 | 223 | 106 | 8 | 11 | 197 | 80 | 301 | 2.52e-30 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24288.t1 | AT1G75180 | 46.862 | 239 | 82 | 7 | 1 | 199 | 82 | 315 | 3.37e-58 | 186 |
| MS.gene24288.t1 | AT1G75180 | 46.862 | 239 | 82 | 7 | 1 | 199 | 82 | 315 | 3.37e-58 | 186 |
| MS.gene24288.t1 | AT1G19400 | 42.918 | 233 | 92 | 8 | 1 | 199 | 78 | 303 | 1.75e-52 | 171 |
| MS.gene24288.t1 | AT1G19400 | 42.918 | 233 | 92 | 8 | 1 | 199 | 78 | 303 | 1.75e-52 | 171 |
| MS.gene24288.t1 | AT1G19400 | 42.918 | 233 | 92 | 8 | 1 | 199 | 78 | 303 | 1.75e-52 | 171 |
| MS.gene24288.t1 | AT1G75180 | 54.000 | 150 | 54 | 4 | 1 | 136 | 82 | 230 | 1.53e-45 | 151 |
| MS.gene24288.t1 | AT1G19400 | 51.333 | 150 | 61 | 3 | 1 | 139 | 78 | 226 | 1.54e-45 | 151 |
| MS.gene24288.t1 | AT1G75180 | 53.333 | 150 | 55 | 3 | 1 | 136 | 82 | 230 | 1.67e-44 | 149 |
| MS.gene24288.t1 | AT1G01500 | 32.766 | 235 | 112 | 8 | 10 | 199 | 94 | 327 | 2.16e-27 | 106 |
Find 30 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCAGATGTTTCATATTC+TGG | 0.154223 | 1.1:-2109953 | None:intergenic |
| TTGTAATGCTCTTCTTCTTC+TGG | 0.227081 | 1.1:-2111948 | None:intergenic |
| GCAACATAAACTTCAATTTC+AGG | 0.260900 | 1.1:-2109833 | None:intergenic |
| AGTGTCCTAGTTAAGATTAT+AGG | 0.277513 | 1.1:-2109875 | None:intergenic |
| ACAGATAGTATAAGAATAAA+TGG | 0.288585 | 1.1:+2109653 | MS.gene24288:CDS |
| ATGATAATGAGAAGAGATAT+TGG | 0.323687 | 1.1:+2109744 | MS.gene24288:CDS |
| TGAAACTACGAGTAGTTCTT+TGG | 0.346111 | 1.1:-2112118 | None:intergenic |
| ATTGCAGGAAGAAACATAAT+AGG | 0.362814 | 1.1:+2109906 | MS.gene24288:CDS |
| GAAATTGAAGTTTATGTTGC+TGG | 0.381875 | 1.1:+2109836 | MS.gene24288:CDS |
| TATGAATTGTGAAACAGAAA+TGG | 0.385595 | 1.1:+2109769 | MS.gene24288:CDS |
| AAGATTCTTCAATTCTAAGA+AGG | 0.437779 | 1.1:+2109588 | MS.gene24288:CDS |
| GGACACTGCAGATCAATTGC+AGG | 0.447539 | 1.1:+2109891 | MS.gene24288:CDS |
| TATCTATATATCCTTCCCTT+TGG | 0.458465 | 1.1:-2111983 | None:intergenic |
| AAGGGAAGGATATATAGATA+TGG | 0.466582 | 1.1:+2111986 | MS.gene24288:CDS |
| TGGTATAGGGGTCAGCCTCT+TGG | 0.472718 | 1.1:+2112085 | MS.gene24288:intron |
| ATGAATTGTGAAACAGAAAT+GGG | 0.487805 | 1.1:+2109770 | MS.gene24288:CDS |
| GATGTTTGTGATCATGATCA+TGG | 0.514929 | 1.1:+2109983 | MS.gene24288:CDS |
| ACAGAAATGGGACCTAATAG+TGG | 0.538208 | 1.1:+2109782 | MS.gene24288:CDS |
| CAACAACATGTATTGCCAAA+GGG | 0.547747 | 1.1:+2111968 | MS.gene24288:CDS |
| TGATCATGGACTTGTTTCAC+AGG | 0.556098 | 1.1:+2109997 | MS.gene24288:CDS |
| GGATATATAGATATGGAAGA+TGG | 0.561870 | 1.1:+2111993 | MS.gene24288:CDS |
| ACTACGAGTAGTTCTTTGGT+AGG | 0.574661 | 1.1:-2112114 | None:intergenic |
| AGATTCTTCAATTCTAAGAA+GGG | 0.575943 | 1.1:+2109589 | MS.gene24288:CDS |
| GAAAACCTATAATCTTAACT+AGG | 0.581947 | 1.1:+2109870 | MS.gene24288:CDS |
| AACATGTATTGCCAAAGGGA+AGG | 0.589506 | 1.1:+2111972 | MS.gene24288:CDS |
| ACAACAACATGTATTGCCAA+AGG | 0.592557 | 1.1:+2111967 | MS.gene24288:CDS |
| CTACTCGTAGTTTCAAGAGG+AGG | 0.625683 | 1.1:+2112126 | MS.gene24288:CDS |
| GAACTACTCGTAGTTTCAAG+AGG | 0.629061 | 1.1:+2112123 | MS.gene24288:CDS |
| TAATAGGAAAGTGTGCATGT+TGG | 0.650786 | 1.1:+2109922 | MS.gene24288:CDS |
| TTTGGTAGGAACGTGCCAAG+AGG | 0.697390 | 1.1:-2112100 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTTTATTTATATTT+AGG | + | chr1.1:2111140-2111159 | MS.gene24288:intron | 0.0% |
| !!! | AAAAAATTATTTTTTGTTGT+GGG | + | chr1.1:2110255-2110274 | MS.gene24288:intron | 10.0% |
| !!! | ATAATTTTTAAAAATAAGTG+GGG | + | chr1.1:2110163-2110182 | MS.gene24288:intron | 10.0% |
| !!! | TAAAAAATTATTTTTTGTTG+TGG | + | chr1.1:2110254-2110273 | MS.gene24288:intron | 10.0% |
| !! | AATTATATTATTATCTGTGT+CGG | - | chr1.1:2110995-2111014 | None:intergenic | 15.0% |
| !! | ACTATCTATTAGATTAAATT+TGG | + | chr1.1:2111105-2111124 | MS.gene24288:intron | 15.0% |
| !! | ATTGTAACTATATACATATA+TGG | + | chr1.1:2111440-2111459 | MS.gene24288:intron | 15.0% |
| !!! | AAAAATTATTTTTTGTTGTG+GGG | + | chr1.1:2110256-2110275 | MS.gene24288:intron | 15.0% |
| !!! | ACATATCTTTTATTAACTAT+TGG | + | chr1.1:2110724-2110743 | MS.gene24288:intron | 15.0% |
| !!! | ATCATAATTTTCATATTCAT+GGG | + | chr1.1:2110394-2110413 | MS.gene24288:intron | 15.0% |
| !!! | ATTTTTAAAAATTATTAGGC+CGG | - | chr1.1:2110158-2110177 | None:intergenic | 15.0% |
| !!! | CATATCTTTTATTAACTATT+GGG | + | chr1.1:2110725-2110744 | MS.gene24288:intron | 15.0% |
| !!! | GTTTTTTTAATTAGAATATG+AGG | + | chr1.1:2110210-2110229 | MS.gene24288:intron | 15.0% |
| !!! | TATCATAATTTTCATATTCA+TGG | + | chr1.1:2110393-2110412 | MS.gene24288:intron | 15.0% |
| !!! | TATTAATGTTATCTATGTTT+TGG | + | chr1.1:2110609-2110628 | MS.gene24288:intron | 15.0% |
| !! | AACCAAACAAGTTATATAAT+AGG | - | chr1.1:2111892-2111911 | None:intergenic | 20.0% |
| !! | AATAAAAGATATGTGTATTG+TGG | - | chr1.1:2110718-2110737 | None:intergenic | 20.0% |
| !! | ACAAAAAATCAGTATTATCA+AGG | - | chr1.1:2110531-2110550 | None:intergenic | 20.0% |
| !! | ACAGATAGTATAAGAATAAA+TGG | + | chr1.1:2109653-2109672 | MS.gene24288:CDS | 20.0% |
| !! | ATATAATTCAGTGTAATCAT+AGG | + | chr1.1:2111007-2111026 | MS.gene24288:intron | 20.0% |
| !! | CAAAAAATCAGTATTATCAA+GGG | - | chr1.1:2110530-2110549 | None:intergenic | 20.0% |
| !! | CAAATTTGTATCATAATAGA+AGG | - | chr1.1:2111225-2111244 | None:intergenic | 20.0% |
| !! | GCTTAACATAAAAGTTATTA+CGG | - | chr1.1:2111868-2111887 | None:intergenic | 20.0% |
| !! | TAAAACAAGCTTAAATACAT+GGG | + | chr1.1:2110188-2110207 | MS.gene24288:intron | 20.0% |
| !! | TTAAAACAAGCTTAAATACA+TGG | + | chr1.1:2110187-2110206 | MS.gene24288:intron | 20.0% |
| !! | TTTATGCATTAATCTATACA+TGG | + | chr1.1:2111699-2111718 | MS.gene24288:intron | 20.0% |
| !!! | AAATTTTACAGATGCTTAAA+AGG | - | chr1.1:2111764-2111783 | None:intergenic | 20.0% |
| !!! | TATATAACTTGTTTGGTTTT+TGG | + | chr1.1:2111894-2111913 | MS.gene24288:intron | 20.0% |
| !!! | TATTTTGTCAAAAAACCTTA+TGG | - | chr1.1:2111341-2111360 | None:intergenic | 20.0% |
| !!! | TGACTAATTGACTATATTTT+CGG | + | chr1.1:2110480-2110499 | MS.gene24288:intron | 20.0% |
| !!! | TTTTGTTTATATTTGAGACA+GGG | - | chr1.1:2110913-2110932 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTATATTTGAGAC+AGG | - | chr1.1:2110914-2110933 | None:intergenic | 20.0% |
| ! | AATTTATCTACCATGTTACT+TGG | + | chr1.1:2111779-2111798 | MS.gene24288:intron | 25.0% |
| ! | AGTAATACGTTTATTTCCTT+AGG | - | chr1.1:2111270-2111289 | None:intergenic | 25.0% |
| ! | ATGAATTGTGAAACAGAAAT+GGG | + | chr1.1:2109770-2109789 | MS.gene24288:CDS | 25.0% |
| ! | ATTTATAAAAATAGCCGATC+GGG | - | chr1.1:2111511-2111530 | None:intergenic | 25.0% |
| ! | ATTTCAGATGTTTCATATTC+TGG | - | chr1.1:2109956-2109975 | None:intergenic | 25.0% |
| ! | CATTTATAAAAATAGCCGAT+CGG | - | chr1.1:2111512-2111531 | None:intergenic | 25.0% |
| ! | GAAAACCTATAATCTTAACT+AGG | + | chr1.1:2109870-2109889 | MS.gene24288:CDS | 25.0% |
| ! | TACATATATGGTTACTCAAT+AGG | + | chr1.1:2111452-2111471 | MS.gene24288:intron | 25.0% |
| ! | TATGAATTGTGAAACAGAAA+TGG | + | chr1.1:2109769-2109788 | MS.gene24288:CDS | 25.0% |
| ! | TATTATCCACAAAAATTGCA+TGG | - | chr1.1:2110438-2110457 | None:intergenic | 25.0% |
| ! | TTAGTACCTTTAGATGATAT+TGG | + | chr1.1:2110642-2110661 | MS.gene24288:intron | 25.0% |
| !! | AAGATTCTTCAATTCTAAGA+AGG | + | chr1.1:2109588-2109607 | MS.gene24288:CDS | 25.0% |
| !! | ACTTATAGGATAGGATTTTT+GGG | - | chr1.1:2110669-2110688 | None:intergenic | 25.0% |
| !! | AGATTCTTCAATTCTAAGAA+GGG | + | chr1.1:2109589-2109608 | MS.gene24288:CDS | 25.0% |
| !! | ATAAATGTGAGCAATTTTGA+GGG | + | chr1.1:2111525-2111544 | MS.gene24288:intron | 25.0% |
| !! | ATCTATACATGGATTTTCTT+AGG | + | chr1.1:2111710-2111729 | MS.gene24288:intron | 25.0% |
| !! | ATGATAATGAGAAGAGATAT+TGG | + | chr1.1:2109744-2109763 | MS.gene24288:CDS | 25.0% |
| !! | ATTGACTATATTTTCGGATT+TGG | + | chr1.1:2110486-2110505 | MS.gene24288:intron | 25.0% |
| !! | TATAAATGTGAGCAATTTTG+AGG | + | chr1.1:2111524-2111543 | MS.gene24288:intron | 25.0% |
| !!! | ACAACTTTTAAGTGCATTTA+TGG | + | chr1.1:2110029-2110048 | MS.gene24288:intron | 25.0% |
| !!! | ATCTAAAGGTACTAAATTAG+AGG | - | chr1.1:2110637-2110656 | None:intergenic | 25.0% |
| !!! | CACCTATTATATAACTTGTT+TGG | + | chr1.1:2111887-2111906 | MS.gene24288:intron | 25.0% |
| !!! | TCTAAAGGTACTAAATTAGA+GGG | - | chr1.1:2110636-2110655 | None:intergenic | 25.0% |
| !!! | TGCTTAAAAGGTTTGTTAAA+TGG | - | chr1.1:2111752-2111771 | None:intergenic | 25.0% |
| AAGGGAAGGATATATAGATA+TGG | + | chr1.1:2111986-2112005 | MS.gene24288:CDS | 30.0% | |
| AAGGTCAGAATCTATTAACA+AGG | - | chr1.1:2110798-2110817 | None:intergenic | 30.0% | |
| AATCTATTAACAAGGGACAT+TGG | - | chr1.1:2110790-2110809 | None:intergenic | 30.0% | |
| AATGTTCCATTTGGTCTATA+AGG | + | chr1.1:2110366-2110385 | MS.gene24288:intron | 30.0% | |
| AATTTGCGAAATGTTCCATT+TGG | + | chr1.1:2110357-2110376 | MS.gene24288:intron | 30.0% | |
| ACTTGGAAATATGTTGTTGA+AGG | - | chr1.1:2111828-2111847 | None:intergenic | 30.0% | |
| AGCAACCATCAAATACATAT+TGG | + | chr1.1:2111556-2111575 | MS.gene24288:intron | 30.0% | |
| AGGTCAGAATCTATTAACAA+GGG | - | chr1.1:2110797-2110816 | None:intergenic | 30.0% | |
| AGTGTCCTAGTTAAGATTAT+AGG | - | chr1.1:2109878-2109897 | None:intergenic | 30.0% | |
| ATGAGTTTGATGAAATCACA+GGG | + | chr1.1:2110059-2110078 | MS.gene24288:intron | 30.0% | |
| ATGTTCCATTTGGTCTATAA+GGG | + | chr1.1:2110367-2110386 | MS.gene24288:intron | 30.0% | |
| ATTGCAGGAAGAAACATAAT+AGG | + | chr1.1:2109906-2109925 | MS.gene24288:CDS | 30.0% | |
| CAAATTAAGTCCAAGTAACA+TGG | - | chr1.1:2111792-2111811 | None:intergenic | 30.0% | |
| CTAAAAGCAGATACTATGTT+AGG | - | chr1.1:2111628-2111647 | None:intergenic | 30.0% | |
| GAAATTGAAGTTTATGTTGC+TGG | + | chr1.1:2109836-2109855 | MS.gene24288:CDS | 30.0% | |
| GACACAACATACAGAAAATA+AGG | - | chr1.1:2110855-2110874 | None:intergenic | 30.0% | |
| GAGAAAAGGTAGTTATAAGA+AGG | - | chr1.1:2111396-2111415 | None:intergenic | 30.0% | |
| GCAACATAAACTTCAATTTC+AGG | - | chr1.1:2109836-2109855 | None:intergenic | 30.0% | |
| GGAAATAAACGTATTACTGA+AGG | + | chr1.1:2111272-2111291 | MS.gene24288:intron | 30.0% | |
| GGATATATAGATATGGAAGA+TGG | + | chr1.1:2111993-2112012 | MS.gene24288:CDS | 30.0% | |
| TATAGTTACAATTGCTGATG+TGG | - | chr1.1:2111432-2111451 | None:intergenic | 30.0% | |
| TATATCCCTTATAGACCAAA+TGG | - | chr1.1:2110375-2110394 | None:intergenic | 30.0% | |
| TATCTATATATCCTTCCCTT+TGG | - | chr1.1:2111986-2112005 | None:intergenic | 30.0% | |
| TATGAGTTTGATGAAATCAC+AGG | + | chr1.1:2110058-2110077 | MS.gene24288:intron | 30.0% | |
| TGGACCTTAGACAAATAAAT+GGG | - | chr1.1:2111596-2111615 | None:intergenic | 30.0% | |
| TTGGACCTTAGACAAATAAA+TGG | - | chr1.1:2111597-2111616 | None:intergenic | 30.0% | |
| ! | AAGGAGTAGATTGAAAGTTT+TGG | - | chr1.1:2111206-2111225 | None:intergenic | 30.0% |
| ! | CACTTATAGGATAGGATTTT+TGG | - | chr1.1:2110670-2110689 | None:intergenic | 30.0% |
| ! | CCTTTGAAAAAACCACTATT+AGG | - | chr1.1:2109797-2109816 | None:intergenic | 30.0% |
| ! | CTTTTACCATGCAATTTTTG+TGG | + | chr1.1:2110429-2110448 | MS.gene24288:intron | 30.0% |
| ! | TAAATGTGAGCAATTTTGAG+GGG | + | chr1.1:2111526-2111545 | MS.gene24288:intron | 30.0% |
| !! | ACTATGTTAGGTATTGGATT+TGG | - | chr1.1:2111616-2111635 | None:intergenic | 30.0% |
| !!! | CCTAATAGTGGTTTTTTCAA+AGG | + | chr1.1:2109794-2109813 | MS.gene24288:CDS | 30.0% |
| !!! | TTGTTTGGTTTTTGGTTCAT+AGG | + | chr1.1:2111902-2111921 | MS.gene24288:intron | 30.0% |
| AACAGTCACACTTATAGGAT+AGG | - | chr1.1:2110678-2110697 | None:intergenic | 35.0% | |
| ACAACAACATGTATTGCCAA+AGG | + | chr1.1:2111967-2111986 | MS.gene24288:CDS | 35.0% | |
| ACCAGTACTTGTCCTTTAAT+GGG | - | chr1.1:2110822-2110841 | None:intergenic | 35.0% | |
| AGTGCATGTTTGGATTAACA+GGG | - | chr1.1:2110337-2110356 | None:intergenic | 35.0% | |
| ATAACCAATATCTCCCCTAA+TGG | + | chr1.1:2111361-2111380 | MS.gene24288:intron | 35.0% | |
| ATGAAGCACAAACATAGACA+CGG | + | chr1.1:2110947-2110966 | MS.gene24288:intron | 35.0% | |
| CAACAACATGTATTGCCAAA+GGG | + | chr1.1:2111968-2111987 | MS.gene24288:CDS | 35.0% | |
| CTCTTTCTGTCTAAACCATA+AGG | + | chr1.1:2111323-2111342 | MS.gene24288:intron | 35.0% | |
| GATGTTTGTGATCATGATCA+TGG | + | chr1.1:2109983-2110002 | MS.gene24288:CDS | 35.0% | |
| GCAGATACTATGTTAGGTAT+TGG | - | chr1.1:2111622-2111641 | None:intergenic | 35.0% | |
| GTCAATATGCTTGAGAGAAA+AGG | - | chr1.1:2111410-2111429 | None:intergenic | 35.0% | |
| GTTGTTGAAGGACTAATACT+AGG | - | chr1.1:2111816-2111835 | None:intergenic | 35.0% | |
| TAGTGCATGTTTGGATTAAC+AGG | - | chr1.1:2110338-2110357 | None:intergenic | 35.0% | |
| TATAAGTGTGACTGTTGCAT+GGG | + | chr1.1:2110682-2110701 | MS.gene24288:intron | 35.0% | |
| TGAAACTACGAGTAGTTCTT+TGG | - | chr1.1:2112121-2112140 | None:intergenic | 35.0% | |
| TTCGCAAATTAGTGCATGTT+TGG | - | chr1.1:2110347-2110366 | None:intergenic | 35.0% | |
| TTGAGTGTGATAGTAACCTA+AGG | + | chr1.1:2111251-2111270 | MS.gene24288:intron | 35.0% | |
| TTGGGACCAATATCATCTAA+AGG | - | chr1.1:2110651-2110670 | None:intergenic | 35.0% | |
| TTGTAATGCTCTTCTTCTTC+TGG | - | chr1.1:2111951-2111970 | None:intergenic | 35.0% | |
| ! | AGCTTTTGGCAAAATCATGA+CGG | + | chr1.1:2110107-2110126 | MS.gene24288:intron | 35.0% |
| ! | GTATTTGATGGTTGCTCAAT+AGG | - | chr1.1:2111552-2111571 | None:intergenic | 35.0% |
| ! | TAATAGGAAAGTGTGCATGT+TGG | + | chr1.1:2109922-2109941 | MS.gene24288:CDS | 35.0% |
| ! | TGTAATCATAGGTATCGTGT+TGG | + | chr1.1:2111018-2111037 | MS.gene24288:intron | 35.0% |
| ! | TTCGGATTTGGAATAAGATG+TGG | + | chr1.1:2110498-2110517 | MS.gene24288:intron | 35.0% |
| ! | TTGTTGAAGCATGTAGCTTT+TGG | + | chr1.1:2110093-2110112 | MS.gene24288:intron | 35.0% |
| !! | ATCTTTGTAGGAGTTGGTAT+AGG | + | chr1.1:2112071-2112090 | MS.gene24288:intron | 35.0% |
| !! | TCTTTGTAGGAGTTGGTATA+GGG | + | chr1.1:2112072-2112091 | MS.gene24288:intron | 35.0% |
| AAATAAATGGGCCGGATAGA+GGG | - | chr1.1:2111584-2111603 | None:intergenic | 40.0% | |
| AACATGTATTGCCAAAGGGA+AGG | + | chr1.1:2111972-2111991 | MS.gene24288:CDS | 40.0% | |
| AAGGAGACACTTACCATTAG+GGG | - | chr1.1:2111377-2111396 | None:intergenic | 40.0% | |
| ACAGAAATGGGACCTAATAG+TGG | + | chr1.1:2109782-2109801 | MS.gene24288:CDS | 40.0% | |
| ACTACGAGTAGTTCTTTGGT+AGG | - | chr1.1:2112117-2112136 | None:intergenic | 40.0% | |
| AGAAGGAGACACTTACCATT+AGG | - | chr1.1:2111379-2111398 | None:intergenic | 40.0% | |
| ATTCTGACCTTCCCCATTAA+AGG | + | chr1.1:2110807-2110826 | MS.gene24288:intron | 40.0% | |
| ATTGGACTTGGCATCTTTGT+AGG | + | chr1.1:2112059-2112078 | MS.gene24288:intron | 40.0% | |
| CACCAGTACTTGTCCTTTAA+TGG | - | chr1.1:2110823-2110842 | None:intergenic | 40.0% | |
| CAGATGAATGTGCAACTAGA+AGG | + | chr1.1:2111165-2111184 | MS.gene24288:intron | 40.0% | |
| CATGCAACAGTCACACTTAT+AGG | - | chr1.1:2110683-2110702 | None:intergenic | 40.0% | |
| CCAGTACTTGTCCTTTAATG+GGG | - | chr1.1:2110821-2110840 | None:intergenic | 40.0% | |
| CCTTAGACAAATAAATGGGC+CGG | - | chr1.1:2111592-2111611 | None:intergenic | 40.0% | |
| CTATAAGTGTGACTGTTGCA+TGG | + | chr1.1:2110681-2110700 | MS.gene24288:intron | 40.0% | |
| CTGATCAGGAGCAAAATTGA+GGG | - | chr1.1:2111479-2111498 | None:intergenic | 40.0% | |
| CTTACCATTAGGGGAGATAT+TGG | - | chr1.1:2111368-2111387 | None:intergenic | 40.0% | |
| GAACTACTCGTAGTTTCAAG+AGG | + | chr1.1:2112123-2112142 | MS.gene24288:CDS | 40.0% | |
| GAAGGAGACACTTACCATTA+GGG | - | chr1.1:2111378-2111397 | None:intergenic | 40.0% | |
| GGGCACCAATATGTATTTGA+TGG | - | chr1.1:2111564-2111583 | None:intergenic | 40.0% | |
| TACTTGTCCTTTAATGGGGA+AGG | - | chr1.1:2110817-2110836 | None:intergenic | 40.0% | |
| TGATCAGGAGCAAAATTGAG+GGG | - | chr1.1:2111478-2111497 | None:intergenic | 40.0% | |
| TTCAATGCTGGAGTAAGAGT+TGG | + | chr1.1:2112029-2112048 | MS.gene24288:intron | 40.0% | |
| TTGTGACACTCATAAGCACT+TGG | - | chr1.1:2111845-2111864 | None:intergenic | 40.0% | |
| ! | CTTCTAGTTGCACATTCATC+TGG | - | chr1.1:2111167-2111186 | None:intergenic | 40.0% |
| ! | TGATCATGGACTTGTTTCAC+AGG | + | chr1.1:2109997-2110016 | MS.gene24288:CDS | 40.0% |
| !! | AAAGGACAAGTACTGGTGTT+GGG | + | chr1.1:2110825-2110844 | MS.gene24288:intron | 40.0% |
| !! | CTTTGTAGGAGTTGGTATAG+GGG | + | chr1.1:2112073-2112092 | MS.gene24288:intron | 40.0% |
| !! | GTAAGAGTTGGTGTTGGAAT+TGG | + | chr1.1:2112041-2112060 | MS.gene24288:intron | 40.0% |
| !! | TAAAGGACAAGTACTGGTGT+TGG | + | chr1.1:2110824-2110843 | MS.gene24288:intron | 40.0% |
| !! | TATGAAGCACTGATACTCCT+CGG | - | chr1.1:2111086-2111105 | None:intergenic | 40.0% |
| ACATAGACACGGACACAACA+CGG | + | chr1.1:2110958-2110977 | MS.gene24288:intron | 45.0% | |
| CAAATAAATGGGCCGGATAG+AGG | - | chr1.1:2111585-2111604 | None:intergenic | 45.0% | |
| CCCCATTAAAGGACAAGTAC+TGG | + | chr1.1:2110818-2110837 | MS.gene24288:intron | 45.0% | |
| CCGGCCCATTTATTTGTCTA+AGG | + | chr1.1:2111589-2111608 | MS.gene24288:intron | 45.0% | |
| CCTGATCAGGAGCAAAATTG+AGG | - | chr1.1:2111480-2111499 | None:intergenic | 45.0% | |
| CTACTCGTAGTTTCAAGAGG+AGG | + | chr1.1:2112126-2112145 | MS.gene24288:CDS | 45.0% | |
| CTTGGCATCTTTGTAGGAGT+TGG | + | chr1.1:2112065-2112084 | MS.gene24288:intron | 45.0% | |
| GAGCTATCATGGTTCAATGC+TGG | + | chr1.1:2112017-2112036 | MS.gene24288:intron | 45.0% | |
| GATTAGGCGTGTCCTAGTAT+CGG | - | chr1.1:2111064-2111083 | None:intergenic | 45.0% | |
| GCATGTTTGGATTAACAGGG+AGG | - | chr1.1:2110334-2110353 | None:intergenic | 45.0% | |
| TGGAAGATGGTGAGCTATCA+TGG | + | chr1.1:2112006-2112025 | MS.gene24288:intron | 45.0% | |
| ! | ACATATTGGTGCCCTCTATC+CGG | + | chr1.1:2111570-2111589 | MS.gene24288:intron | 45.0% |
| ! | ATCAGGTTGTAACTCCCGAT+CGG | + | chr1.1:2111494-2111513 | MS.gene24288:intron | 45.0% |
| ! | CCTCAATTTTGCTCCTGATC+AGG | + | chr1.1:2111477-2111496 | MS.gene24288:intron | 45.0% |
| !! | AAGGACAAGTACTGGTGTTG+GGG | + | chr1.1:2110826-2110845 | MS.gene24288:intron | 45.0% |
| !! | GTTGGTGTTGGAATTGGACT+TGG | + | chr1.1:2112047-2112066 | MS.gene24288:intron | 45.0% |
| !!! | AATAATTTTTAAAAATAAGT+GGG | + | chr1.1:2110162-2110181 | MS.gene24288:intron | 5.0% |
| !!! | ACTTATTTTTAAAAATTATT+AGG | - | chr1.1:2110162-2110181 | None:intergenic | 5.0% |
| !!! | TAATAATTTTTAAAAATAAG+TGG | + | chr1.1:2110161-2110180 | MS.gene24288:intron | 5.0% |
| CACTGTGATTGCGTCAGACA+AGG | + | chr1.1:2110132-2110151 | MS.gene24288:intron | 50.0% | |
| GGACACTGCAGATCAATTGC+AGG | + | chr1.1:2109891-2109910 | MS.gene24288:CDS | 50.0% | |
| TCGGGAGTTACAACCTGATC+AGG | - | chr1.1:2111493-2111512 | None:intergenic | 50.0% | |
| TTTGGTAGGAACGTGCCAAG+AGG | - | chr1.1:2112103-2112122 | None:intergenic | 50.0% | |
| ! | GCACTGATACTCCTCGGATT+AGG | - | chr1.1:2111080-2111099 | None:intergenic | 50.0% |
| !! | GCTGGAGTAAGAGTTGGTGT+TGG | + | chr1.1:2112035-2112054 | MS.gene24288:intron | 50.0% |
| AACAGGGAGGTCTGACGTCA+GGG | - | chr1.1:2110321-2110340 | None:intergenic | 55.0% | |
| ACTAGGACACGCCTAATCCG+AGG | + | chr1.1:2111066-2111085 | MS.gene24288:intron | 55.0% | |
| AGTGTGACTGTTGCATGGGC+AGG | + | chr1.1:2110686-2110705 | MS.gene24288:intron | 55.0% | |
| GTGATTGCGTCAGACAAGGC+CGG | + | chr1.1:2110136-2110155 | MS.gene24288:intron | 55.0% | |
| TAACAGGGAGGTCTGACGTC+AGG | - | chr1.1:2110322-2110341 | None:intergenic | 55.0% | |
| TGGTATAGGGGTCAGCCTCT+TGG | + | chr1.1:2112085-2112104 | MS.gene24288:intron | 55.0% | |
| ! | TCCTAGTATCGGACACGCGT+CGG | - | chr1.1:2111053-2111072 | None:intergenic | 55.0% |
| !! | GACAAGTACTGGTGTTGGGG+AGG | + | chr1.1:2110829-2110848 | MS.gene24288:intron | 55.0% |
| !! | GTTTTGGCGGCCTTACCCTT+AGG | + | chr1.1:2110291-2110310 | MS.gene24288:intron | 55.0% |
| ACCGACGCGTGTCCGATACT+AGG | + | chr1.1:2111049-2111068 | MS.gene24288:intron | 60.0% | |
| TCAGGGTCGGCCTAAGGGTA+AGG | - | chr1.1:2110304-2110323 | None:intergenic | 60.0% | |
| TGACGTCAGGGTCGGCCTAA+GGG | - | chr1.1:2110309-2110328 | None:intergenic | 60.0% | |
| TGTTGTGGGGCCTAACGCGA+GGG | + | chr1.1:2110269-2110288 | MS.gene24288:intron | 60.0% | |
| TTGTTGTGGGGCCTAACGCG+AGG | + | chr1.1:2110268-2110287 | MS.gene24288:intron | 60.0% | |
| !! | GCCTAACGCGAGGGTTTTGG+CGG | + | chr1.1:2110278-2110297 | MS.gene24288:intron | 60.0% |
| CTGACGTCAGGGTCGGCCTA+AGG | - | chr1.1:2110310-2110329 | None:intergenic | 65.0% | |
| GCCGCCAAAACCCTCGCGTT+AGG | - | chr1.1:2110282-2110301 | None:intergenic | 65.0% | |
| GGGAGGTCTGACGTCAGGGT+CGG | - | chr1.1:2110317-2110336 | None:intergenic | 65.0% | |
| ! | GGGGCCTAACGCGAGGGTTT+TGG | + | chr1.1:2110275-2110294 | MS.gene24288:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 2109575 | 2112157 | 2109575 | ID=MS.gene24288 |
| chr1.1 | mRNA | 2109575 | 2112157 | 2109575 | ID=MS.gene24288.t1;Parent=MS.gene24288 |
| chr1.1 | exon | 2109575 | 2110018 | 2109575 | ID=MS.gene24288.t1.exon1;Parent=MS.gene24288.t1 |
| chr1.1 | CDS | 2109575 | 2110018 | 2109575 | ID=cds.MS.gene24288.t1;Parent=MS.gene24288.t1 |
| chr1.1 | exon | 2111924 | 2112014 | 2111924 | ID=MS.gene24288.t1.exon2;Parent=MS.gene24288.t1 |
| chr1.1 | CDS | 2111924 | 2112014 | 2111924 | ID=cds.MS.gene24288.t1;Parent=MS.gene24288.t1 |
| chr1.1 | exon | 2112093 | 2112157 | 2112093 | ID=MS.gene24288.t1.exon3;Parent=MS.gene24288.t1 |
| chr1.1 | CDS | 2112093 | 2112157 | 2112093 | ID=cds.MS.gene24288.t1;Parent=MS.gene24288.t1 |
| Gene Sequence |
| Protein sequence |
