Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90950.t1 | XP_004505752.1 | 91.7 | 156 | 9 | 1 | 1 | 156 | 68 | 219 | 3.90E-72 | 280.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90950.t1 | A0A1S2YK43 | 91.7 | 156 | 9 | 1 | 1 | 156 | 68 | 219 | 2.8e-72 | 280.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049134 | MS.gene90950 | -0.81441 | 1.56E-51 | -1.69E-46 |
| MS.gene049149 | MS.gene90950 | 0.813545 | 2.43E-51 | -1.69E-46 |
| MS.gene049150 | MS.gene90950 | 0.808464 | 3.06E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene90950 | 0.803486 | 3.41E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene90950 | 0.890584 | 8.64E-74 | -1.69E-46 |
| MS.gene049369 | MS.gene90950 | 0.840919 | 6.51E-58 | -1.69E-46 |
| MS.gene049396 | MS.gene90950 | 0.837572 | 4.80E-57 | -1.69E-46 |
| MS.gene050122 | MS.gene90950 | 0.809611 | 1.74E-50 | -1.69E-46 |
| MS.gene050128 | MS.gene90950 | 0.802036 | 6.79E-49 | -1.69E-46 |
| MS.gene050215 | MS.gene90950 | 0.806125 | 9.58E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene90950 | 0.830475 | 2.88E-55 | -1.69E-46 |
| MS.gene050397 | MS.gene90950 | 0.800102 | 1.69E-48 | -1.69E-46 |
| MS.gene050426 | MS.gene90950 | -0.828062 | 1.11E-54 | -1.69E-46 |
| MS.gene050464 | MS.gene90950 | 0.805638 | 1.21E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene90950 | 0.82088 | 5.43E-53 | -1.69E-46 |
| MS.gene050593 | MS.gene90950 | 0.834727 | 2.54E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene90950 | 0.82103 | 5.01E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene90950 | 0.908172 | 2.29E-81 | -1.69E-46 |
| MS.gene050971 | MS.gene90950 | 0.829718 | 4.40E-55 | -1.69E-46 |
| MS.gene05105 | MS.gene90950 | 0.864828 | 9.18E-65 | -1.69E-46 |
| MS.gene051360 | MS.gene90950 | 0.86674 | 2.29E-65 | -1.69E-46 |
| MS.gene051387 | MS.gene90950 | 0.832098 | 1.15E-55 | -1.69E-46 |
| MS.gene051521 | MS.gene90950 | 0.826025 | 3.40E-54 | -1.69E-46 |
| MS.gene051525 | MS.gene90950 | 0.865497 | 5.66E-65 | -1.69E-46 |
| MS.gene051582 | MS.gene90950 | 0.82042 | 6.92E-53 | -1.69E-46 |
| MS.gene051588 | MS.gene90950 | 0.824043 | 1.00E-53 | -1.69E-46 |
| MS.gene051605 | MS.gene90950 | 0.816291 | 5.96E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene90950 | 0.801008 | 1.10E-48 | -1.69E-46 |
| MS.gene051860 | MS.gene90950 | 0.831642 | 1.49E-55 | -1.69E-46 |
| MS.gene052011 | MS.gene90950 | -0.843991 | 9.97E-59 | -1.69E-46 |
| MS.gene052077 | MS.gene90950 | 0.833636 | 4.76E-56 | -1.69E-46 |
| MS.gene052134 | MS.gene90950 | 0.828444 | 8.96E-55 | -1.69E-46 |
| MS.gene052135 | MS.gene90950 | 0.840307 | 9.41E-58 | -1.69E-46 |
| MS.gene052136 | MS.gene90950 | 0.833551 | 5.00E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene90950 | 0.874886 | 4.76E-68 | -1.69E-46 |
| MS.gene052253 | MS.gene90950 | 0.866369 | 3.00E-65 | -1.69E-46 |
| MS.gene052310 | MS.gene90950 | 0.817688 | 2.90E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene90950 | 0.864541 | 1.13E-64 | -1.69E-46 |
| MS.gene052346 | MS.gene90950 | 0.829527 | 4.90E-55 | -1.69E-46 |
| MS.gene052414 | MS.gene90950 | 0.880713 | 4.37E-70 | -1.69E-46 |
| MS.gene052421 | MS.gene90950 | 0.813248 | 2.82E-51 | -1.69E-46 |
| MS.gene052481 | MS.gene90950 | 0.813035 | 3.14E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene90950 | 0.850457 | 1.68E-60 | -1.69E-46 |
| MS.gene052505 | MS.gene90950 | 0.801787 | 7.63E-49 | -1.69E-46 |
| MS.gene052762 | MS.gene90950 | 0.816006 | 6.91E-52 | -1.69E-46 |
| MS.gene052784 | MS.gene90950 | 0.801686 | 8.01E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene90950 | 0.823101 | 1.66E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene90950 | 0.81175 | 5.99E-51 | -1.69E-46 |
| MS.gene053104 | MS.gene90950 | 0.807102 | 5.96E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene90950 | 0.84899 | 4.31E-60 | -1.69E-46 |
| MS.gene05316 | MS.gene90950 | 0.829979 | 3.80E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene90950 | 0.827645 | 1.40E-54 | -1.69E-46 |
| MS.gene053301 | MS.gene90950 | 0.813681 | 2.26E-51 | -1.69E-46 |
| MS.gene05335 | MS.gene90950 | 0.809158 | 2.17E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene90950 | 0.84387 | 1.07E-58 | -1.69E-46 |
| MS.gene053494 | MS.gene90950 | 0.800295 | 1.54E-48 | -1.69E-46 |
| MS.gene053554 | MS.gene90950 | 0.80325 | 3.81E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene90950 | 0.820606 | 6.28E-53 | -1.69E-46 |
| MS.gene053574 | MS.gene90950 | 0.804205 | 2.42E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene90950 | 0.818327 | 2.08E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene90950 | 0.805675 | 1.19E-49 | -1.69E-46 |
| MS.gene053912 | MS.gene90950 | 0.834649 | 2.65E-56 | -1.69E-46 |
| MS.gene054183 | MS.gene90950 | 0.844287 | 8.30E-59 | -1.69E-46 |
| MS.gene054349 | MS.gene90950 | 0.830357 | 3.07E-55 | -1.69E-46 |
| MS.gene054556 | MS.gene90950 | 0.860338 | 2.21E-63 | -1.69E-46 |
| MS.gene054719 | MS.gene90950 | 0.809628 | 1.72E-50 | -1.69E-46 |
| MS.gene054920 | MS.gene90950 | 0.808275 | 3.36E-50 | -1.69E-46 |
| MS.gene05505 | MS.gene90950 | 0.807445 | 5.04E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene90950 | 0.891429 | 4.00E-74 | -1.69E-46 |
| MS.gene055369 | MS.gene90950 | 0.858443 | 8.21E-63 | -1.69E-46 |
| MS.gene055539 | MS.gene90950 | 0.832731 | 8.00E-56 | -1.69E-46 |
| MS.gene05553 | MS.gene90950 | 0.842145 | 3.09E-58 | -1.69E-46 |
| MS.gene055666 | MS.gene90950 | 0.834951 | 2.23E-56 | -1.69E-46 |
| MS.gene055741 | MS.gene90950 | 0.84388 | 1.07E-58 | -1.69E-46 |
| MS.gene055744 | MS.gene90950 | 0.854022 | 1.62E-61 | -1.69E-46 |
| MS.gene055859 | MS.gene90950 | 0.824696 | 7.02E-54 | -1.69E-46 |
| MS.gene055909 | MS.gene90950 | 0.859058 | 5.38E-63 | -1.69E-46 |
| MS.gene055911 | MS.gene90950 | 0.861392 | 1.06E-63 | -1.69E-46 |
| MS.gene056166 | MS.gene90950 | 0.819676 | 1.02E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene90950 | 0.859519 | 3.91E-63 | -1.69E-46 |
| MS.gene056422 | MS.gene90950 | 0.868207 | 7.75E-66 | -1.69E-46 |
| MS.gene056511 | MS.gene90950 | 0.896453 | 3.64E-76 | -1.69E-46 |
| MS.gene056514 | MS.gene90950 | 0.817621 | 3.00E-52 | -1.69E-46 |
| MS.gene05664 | MS.gene90950 | 0.810451 | 1.15E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene90950 | 0.832477 | 9.24E-56 | -1.69E-46 |
| MS.gene05666 | MS.gene90950 | 0.803491 | 3.40E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene90950 | 0.84296 | 1.88E-58 | -1.69E-46 |
| MS.gene056876 | MS.gene90950 | 0.803643 | 3.16E-49 | -1.69E-46 |
| MS.gene056902 | MS.gene90950 | 0.811813 | 5.80E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene90950 | 0.835583 | 1.54E-56 | -1.69E-46 |
| MS.gene057146 | MS.gene90950 | 0.805311 | 1.42E-49 | -1.69E-46 |
| MS.gene057330 | MS.gene90950 | 0.814279 | 1.67E-51 | -1.69E-46 |
| MS.gene057396 | MS.gene90950 | 0.862883 | 3.69E-64 | -1.69E-46 |
| MS.gene057448 | MS.gene90950 | 0.859805 | 3.21E-63 | -1.69E-46 |
| MS.gene057449 | MS.gene90950 | 0.853759 | 1.93E-61 | -1.69E-46 |
| MS.gene057450 | MS.gene90950 | 0.853988 | 1.66E-61 | -1.69E-46 |
| MS.gene057469 | MS.gene90950 | 0.803653 | 3.15E-49 | -1.69E-46 |
| MS.gene057476 | MS.gene90950 | 0.817161 | 3.81E-52 | -1.69E-46 |
| MS.gene057537 | MS.gene90950 | 0.821303 | 4.34E-53 | -1.69E-46 |
| MS.gene057734 | MS.gene90950 | 0.875186 | 3.76E-68 | -1.69E-46 |
| MS.gene057749 | MS.gene90950 | 0.838685 | 2.48E-57 | -1.69E-46 |
| MS.gene057823 | MS.gene90950 | 0.842552 | 2.41E-58 | -1.69E-46 |
| MS.gene057927 | MS.gene90950 | 0.811404 | 7.12E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene90950 | 0.812443 | 4.23E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene90950 | 0.869001 | 4.29E-66 | -1.69E-46 |
| MS.gene058075 | MS.gene90950 | 0.825455 | 4.64E-54 | -1.69E-46 |
| MS.gene05811 | MS.gene90950 | 0.814266 | 1.68E-51 | -1.69E-46 |
| MS.gene058120 | MS.gene90950 | 0.847284 | 1.27E-59 | -1.69E-46 |
| MS.gene058376 | MS.gene90950 | 0.828319 | 9.60E-55 | -1.69E-46 |
| MS.gene05842 | MS.gene90950 | 0.801344 | 9.41E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene90950 | 0.830315 | 3.15E-55 | -1.69E-46 |
| MS.gene058700 | MS.gene90950 | 0.893373 | 6.68E-75 | -1.69E-46 |
| MS.gene058928 | MS.gene90950 | 0.847797 | 9.21E-60 | -1.69E-46 |
| MS.gene058948 | MS.gene90950 | 0.846255 | 2.44E-59 | -1.69E-46 |
| MS.gene058949 | MS.gene90950 | 0.813294 | 2.75E-51 | -1.69E-46 |
| MS.gene058995 | MS.gene90950 | 0.815624 | 8.41E-52 | -1.69E-46 |
| MS.gene059011 | MS.gene90950 | 0.813692 | 2.25E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene90950 | 0.840282 | 9.55E-58 | -1.69E-46 |
| MS.gene059080 | MS.gene90950 | 0.804942 | 1.70E-49 | -1.69E-46 |
| MS.gene059082 | MS.gene90950 | 0.839695 | 1.36E-57 | -1.69E-46 |
| MS.gene059141 | MS.gene90950 | 0.80132 | 9.52E-49 | -1.69E-46 |
| MS.gene059285 | MS.gene90950 | 0.813092 | 3.05E-51 | -1.69E-46 |
| MS.gene059294 | MS.gene90950 | 0.825798 | 3.85E-54 | -1.69E-46 |
| MS.gene059366 | MS.gene90950 | 0.868645 | 5.60E-66 | -1.69E-46 |
| MS.gene059368 | MS.gene90950 | 0.815524 | 8.85E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene90950 | 0.883713 | 3.56E-71 | -1.69E-46 |
| MS.gene059462 | MS.gene90950 | 0.845054 | 5.16E-59 | -1.69E-46 |
| MS.gene059597 | MS.gene90950 | 0.814759 | 1.31E-51 | -1.69E-46 |
| MS.gene059674 | MS.gene90950 | 0.831192 | 1.92E-55 | -1.69E-46 |
| MS.gene059676 | MS.gene90950 | 0.824677 | 7.09E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene90950 | 0.882479 | 1.01E-70 | -1.69E-46 |
| MS.gene059692 | MS.gene90950 | 0.862351 | 5.39E-64 | -1.69E-46 |
| MS.gene059695 | MS.gene90950 | 0.861643 | 8.88E-64 | -1.69E-46 |
| MS.gene059711 | MS.gene90950 | 0.832244 | 1.06E-55 | -1.69E-46 |
| MS.gene059807 | MS.gene90950 | 0.905895 | 2.65E-80 | -1.69E-46 |
| MS.gene05984 | MS.gene90950 | 0.817433 | 3.31E-52 | -1.69E-46 |
| MS.gene059876 | MS.gene90950 | 0.846176 | 2.56E-59 | -1.69E-46 |
| MS.gene059933 | MS.gene90950 | 0.874141 | 8.52E-68 | -1.69E-46 |
| MS.gene059958 | MS.gene90950 | 0.824018 | 1.01E-53 | -1.69E-46 |
| MS.gene060247 | MS.gene90950 | 0.80706 | 6.08E-50 | -1.69E-46 |
| MS.gene060372 | MS.gene90950 | 0.827644 | 1.40E-54 | -1.69E-46 |
| MS.gene060403 | MS.gene90950 | 0.869554 | 2.84E-66 | -1.69E-46 |
| MS.gene060495 | MS.gene90950 | 0.821483 | 3.94E-53 | -1.69E-46 |
| MS.gene060804 | MS.gene90950 | 0.824227 | 9.05E-54 | -1.69E-46 |
| MS.gene060835 | MS.gene90950 | 0.812262 | 4.63E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene90950 | 0.884709 | 1.52E-71 | -1.69E-46 |
| MS.gene06097 | MS.gene90950 | 0.819599 | 1.07E-52 | -1.69E-46 |
| MS.gene060986 | MS.gene90950 | 0.817299 | 3.54E-52 | -1.69E-46 |
| MS.gene061041 | MS.gene90950 | 0.810503 | 1.12E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene90950 | 0.825009 | 5.92E-54 | -1.69E-46 |
| MS.gene061051 | MS.gene90950 | -0.846329 | 2.33E-59 | -1.69E-46 |
| MS.gene061154 | MS.gene90950 | 0.900081 | 1.05E-77 | -1.69E-46 |
| MS.gene061159 | MS.gene90950 | 0.82945 | 5.11E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90950.t1 | MTR_4g074210 | 99.359 | 156 | 1 | 0 | 1 | 156 | 68 | 223 | 5.03e-113 | 320 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90950.t1 | AT3G19900 | 76.190 | 147 | 31 | 1 | 10 | 156 | 80 | 222 | 6.65e-78 | 231 |
| MS.gene90950.t1 | AT3G19900 | 62.963 | 81 | 26 | 1 | 10 | 90 | 80 | 156 | 3.70e-28 | 102 |
Find 34 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTTATCAGGAACAAATA+TGG | 0.244535 | 4.2:-34513012 | MS.gene90950:CDS |
| TTGACCTTGCTACTCTTATC+AGG | 0.271521 | 4.2:-34513023 | MS.gene90950:CDS |
| GGGGAGCTGTTTCACATATT+CGG | 0.324568 | 4.2:-34512119 | MS.gene90950:CDS |
| GTCACTATCATCTGAATCAT+AGG | 0.333924 | 4.2:+34514111 | None:intergenic |
| TGCAAACTCGTTAAAATGTT+GGG | 0.348396 | 4.2:-34512139 | MS.gene90950:CDS |
| AACTAACCTTCTTAATCAAC+TGG | 0.361082 | 4.2:+34512974 | None:intergenic |
| TAATTTATGCTAGGAATTCA+TGG | 0.383065 | 4.2:-34512784 | MS.gene90950:intron |
| CTCTTATCAGGAACAAATAT+GGG | 0.420619 | 4.2:-34513011 | MS.gene90950:CDS |
| TTGCAAACTCGTTAAAATGT+TGG | 0.438360 | 4.2:-34512140 | MS.gene90950:CDS |
| TGATGTCCAGTTGATTAAGA+AGG | 0.453415 | 4.2:-34512980 | MS.gene90950:intron |
| GCAGATGATTCAAGGTTTAG+TGG | 0.457315 | 4.2:-34513048 | MS.gene90950:CDS |
| CGAAAGAACGACCTCGGATA+GGG | 0.464263 | 4.2:-34512080 | MS.gene90950:CDS |
| TAGTCGGTGCAGATGATTCA+AGG | 0.469746 | 4.2:-34513056 | MS.gene90950:CDS |
| TTTATAGATATGGACGAGTC+CGG | 0.477851 | 4.2:-34511870 | MS.gene90950:CDS |
| GTCGTTCTTTCGACTTTGCT+AGG | 0.484164 | 4.2:+34512091 | None:intergenic |
| TCGAAAGAACGACCTCGGAT+AGG | 0.487536 | 4.2:-34512081 | MS.gene90950:CDS |
| AATATATTCTTCTTCAGTCA+AGG | 0.492732 | 4.2:+34512179 | None:intergenic |
| ATATATTCTTCTTCAGTCAA+GGG | 0.512865 | 4.2:+34512180 | None:intergenic |
| ATGATCAGGTAAATAGTGAC+AGG | 0.533504 | 4.2:-34513101 | MS.gene90950:CDS |
| TCACTATCATCTGAATCATA+GGG | 0.536151 | 4.2:+34514112 | None:intergenic |
| CCACTCGTTCGCACGTGCAC+CGG | 0.543129 | 4.2:+34511851 | None:intergenic |
| AATTTATGCTAGGAATTCAT+GGG | 0.548556 | 4.2:-34512783 | MS.gene90950:intron |
| CCGGTGCACGTGCGAACGAG+TGG | 0.551813 | 4.2:-34511851 | MS.gene90950:CDS |
| CAGAATAATGATGAAATCAA+AGG | 0.553196 | 4.2:-34514076 | MS.gene90950:CDS |
| GAATGTCATGTGGAAGTACA+TGG | 0.561058 | 4.2:-34512742 | MS.gene90950:CDS |
| GCAAACTCGTTAAAATGTTG+GGG | 0.580293 | 4.2:-34512138 | MS.gene90950:CDS |
| CATGTGGAAGTACATGGAGC+AGG | 0.580471 | 4.2:-34512736 | MS.gene90950:intron |
| TATATTCTTCTTCAGTCAAG+GGG | 0.582965 | 4.2:+34512181 | None:intergenic |
| TCCACATGACATTCATAGCA+AGG | 0.612755 | 4.2:+34512751 | None:intergenic |
| GAAAGTCTCGAGAAAATAGT+CGG | 0.631155 | 4.2:-34513072 | MS.gene90950:CDS |
| TGTTCCTGATAAGAGTAGCA+AGG | 0.634017 | 4.2:+34513019 | None:intergenic |
| AGAACGACCTCGGATAGGGA+AGG | 0.655521 | 4.2:-34512076 | MS.gene90950:intron |
| CAAAGTCGAAAGAACGACCT+CGG | 0.659433 | 4.2:-34512086 | MS.gene90950:CDS |
| TCCTTGCTATGAATGTCATG+TGG | 0.672616 | 4.2:-34512752 | MS.gene90950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATCATATGTAAATAGATT+GGG | - | chr4.2:34513927-34513946 | MS.gene90950:intron | 15.0% |
| !!! | TTCTACTTTTAATTGTTTAT+GGG | - | chr4.2:34512123-34512142 | MS.gene90950:CDS | 15.0% |
| !!! | TTTTTTTTAGAAAAATGATC+AGG | - | chr4.2:34512842-34512861 | MS.gene90950:intron | 15.0% |
| !! | AATCAAGAGAATATATGTAA+AGG | + | chr4.2:34512509-34512528 | None:intergenic | 20.0% |
| !! | AATTATGTAACAGCAAAATA+AGG | + | chr4.2:34513158-34513177 | None:intergenic | 20.0% |
| !! | AGAGAAAAAAGCAATAAAAA+AGG | + | chr4.2:34513093-34513112 | None:intergenic | 20.0% |
| !! | CATATCATATGTAAATAGAT+TGG | - | chr4.2:34513926-34513945 | MS.gene90950:intron | 20.0% |
| !! | GAGAAAAAAGCAATAAAAAA+GGG | + | chr4.2:34513092-34513111 | None:intergenic | 20.0% |
| !! | TAGAAATTCTTTGTAAGAAA+TGG | - | chr4.2:34512095-34512114 | MS.gene90950:CDS | 20.0% |
| !! | TATGTTAATAGATCTTAAGA+TGG | - | chr4.2:34512412-34512431 | MS.gene90950:intron | 20.0% |
| !!! | GTTCTACTTTTAATTGTTTA+TGG | - | chr4.2:34512122-34512141 | MS.gene90950:CDS | 20.0% |
| !!! | TATATTGATTTTTGTTACGA+AGG | - | chr4.2:34511991-34512010 | MS.gene90950:intron | 20.0% |
| !!! | TCTAAGATACAACATAAAAA+AGG | - | chr4.2:34512317-34512336 | MS.gene90950:intron | 20.0% |
| ! | AACTAAAAACAAGAAGATAG+AGG | + | chr4.2:34512632-34512651 | None:intergenic | 25.0% |
| ! | AAGGTAAATATAAGAAATGC+AGG | + | chr4.2:34513054-34513073 | None:intergenic | 25.0% |
| ! | AATATATATTATTGCTTCGC+CGG | - | chr4.2:34512384-34512403 | MS.gene90950:intron | 25.0% |
| ! | AATATATTCTTCTTCAGTCA+AGG | + | chr4.2:34513781-34513800 | None:intergenic | 25.0% |
| ! | AATTTATGCTAGGAATTCAT+GGG | - | chr4.2:34513174-34513193 | MS.gene90950:intron | 25.0% |
| ! | ACATAATCATTAGAAGCTTA+TGG | - | chr4.2:34513685-34513704 | MS.gene90950:intron | 25.0% |
| ! | AGAAATGCTAGAATAATATG+CGG | - | chr4.2:34512023-34512042 | MS.gene90950:intron | 25.0% |
| ! | AGAACAGAAGAAAAAACAAA+AGG | - | chr4.2:34513574-34513593 | MS.gene90950:intron | 25.0% |
| ! | AGACATCAAGATAAAAACAA+AGG | - | chr4.2:34513332-34513351 | MS.gene90950:intron | 25.0% |
| ! | ATATATTCTTCTTCAGTCAA+GGG | + | chr4.2:34513780-34513799 | None:intergenic | 25.0% |
| ! | ATATTTGAGCAAAATCTATC+TGG | - | chr4.2:34512673-34512692 | MS.gene90950:intron | 25.0% |
| ! | ATCAAAATGAAAACAGCTTA+TGG | - | chr4.2:34513519-34513538 | MS.gene90950:intron | 25.0% |
| ! | CAAATAACAAGAAGTTAGAA+GGG | + | chr4.2:34514049-34514068 | None:intergenic | 25.0% |
| ! | CAGAATAATGATGAAATCAA+AGG | - | chr4.2:34511881-34511900 | MS.gene90950:CDS | 25.0% |
| ! | CCAAAATTACATCTAATGTA+GGG | + | chr4.2:34512233-34512252 | None:intergenic | 25.0% |
| ! | CTTTGTATAAAGTAGTATCT+CGG | - | chr4.2:34513628-34513647 | MS.gene90950:intron | 25.0% |
| ! | GACATCAAGATAAAAACAAA+GGG | - | chr4.2:34513333-34513352 | MS.gene90950:intron | 25.0% |
| ! | GATCTATTAACATACATTTC+CGG | + | chr4.2:34512406-34512425 | None:intergenic | 25.0% |
| ! | GTGAGATGATAAAATATGTT+TGG | + | chr4.2:34512355-34512374 | None:intergenic | 25.0% |
| ! | TAATTTATGCTAGGAATTCA+TGG | - | chr4.2:34513173-34513192 | MS.gene90950:intron | 25.0% |
| ! | TGTTTGTCAATTTGTGAAAT+GGG | + | chr4.2:34513606-34513625 | None:intergenic | 25.0% |
| ! | TTGTTTGTCAATTTGTGAAA+TGG | + | chr4.2:34513607-34513626 | None:intergenic | 25.0% |
| ! | TTTGCCAAAACATATGATTA+AGG | + | chr4.2:34512702-34512721 | None:intergenic | 25.0% |
| !! | CTGAAGAAGAATATATTTTG+AGG | - | chr4.2:34513784-34513803 | MS.gene90950:intron | 25.0% |
| !! | TGTGAGCATTTTTATAGATA+TGG | - | chr4.2:34514077-34514096 | MS.gene90950:CDS | 25.0% |
| AACTAACCTTCTTAATCAAC+TGG | + | chr4.2:34512986-34513005 | None:intergenic | 30.0% | |
| AATTGGTCAAGAATGGTTAT+TGG | + | chr4.2:34513457-34513476 | None:intergenic | 30.0% | |
| ACTCTTATCAGGAACAAATA+TGG | - | chr4.2:34512945-34512964 | MS.gene90950:intron | 30.0% | |
| ATGTGAAATCTTAGTTTCGA+TGG | - | chr4.2:34512561-34512580 | MS.gene90950:intron | 30.0% | |
| ATTCTGCCAATATTGTATGA+AGG | + | chr4.2:34513956-34513975 | None:intergenic | 30.0% | |
| CCAAATAACAAGAAGTTAGA+AGG | + | chr4.2:34514050-34514069 | None:intergenic | 30.0% | |
| CTCTTATCAGGAACAAATAT+GGG | - | chr4.2:34512946-34512965 | MS.gene90950:intron | 30.0% | |
| CTGACTCTTAGTTAGAATAA+TGG | - | chr4.2:34513411-34513430 | MS.gene90950:intron | 30.0% | |
| GAAGAAAAAACAAAAGGCAA+AGG | - | chr4.2:34513580-34513599 | MS.gene90950:intron | 30.0% | |
| GCCAAAATTACATCTAATGT+AGG | + | chr4.2:34512234-34512253 | None:intergenic | 30.0% | |
| GCTGTTACATAATTTATGCT+AGG | - | chr4.2:34513164-34513183 | MS.gene90950:intron | 30.0% | |
| TAATAGTACAACTAAGTGTC+TGG | + | chr4.2:34513662-34513681 | None:intergenic | 30.0% | |
| TATATTCTTCTTCAGTCAAG+GGG | + | chr4.2:34513779-34513798 | None:intergenic | 30.0% | |
| TCACTATCATCTGAATCATA+GGG | + | chr4.2:34511848-34511867 | None:intergenic | 30.0% | |
| TGACAGAATTCCATTAGAAT+TGG | + | chr4.2:34513474-34513493 | None:intergenic | 30.0% | |
| TGCAAACTCGTTAAAATGTT+GGG | - | chr4.2:34513818-34513837 | MS.gene90950:intron | 30.0% | |
| TTATACAAGCATTTCCATAG+TGG | + | chr4.2:34513713-34513732 | None:intergenic | 30.0% | |
| TTGCAAACTCGTTAAAATGT+TGG | - | chr4.2:34513817-34513836 | MS.gene90950:intron | 30.0% | |
| ! | ATGTTGAAGCTCTTTTCAAA+TGG | - | chr4.2:34512731-34512750 | MS.gene90950:intron | 30.0% |
| ! | CAGCTTATGGATTTTTAATC+TGG | - | chr4.2:34513532-34513551 | MS.gene90950:intron | 30.0% |
| ! | CCCTACATTAGATGTAATTT+TGG | - | chr4.2:34512230-34512249 | MS.gene90950:intron | 30.0% |
| ! | CTCTTTTCAAATGGAAATAC+AGG | - | chr4.2:34512740-34512759 | MS.gene90950:CDS | 30.0% |
| ! | GCTTCCTTAATCATATGTTT+TGG | - | chr4.2:34512695-34512714 | MS.gene90950:intron | 30.0% |
| ! | TTGTAAACTTTTGCTGATGT+TGG | + | chr4.2:34513981-34514000 | None:intergenic | 30.0% |
| !! | CCTTCTAACTTCTTGTTATT+TGG | - | chr4.2:34514047-34514066 | MS.gene90950:intron | 30.0% |
| !!! | GAAGGTTAGTTTTTTACAAG+TGG | - | chr4.2:34512995-34513014 | MS.gene90950:CDS | 30.0% |
| AGATCTTAAGATGGTGAACT+AGG | - | chr4.2:34512421-34512440 | MS.gene90950:intron | 35.0% | |
| ATGATCAGGTAAATAGTGAC+AGG | - | chr4.2:34512856-34512875 | MS.gene90950:intron | 35.0% | |
| ATGCTAGAATAATATGCGGT+AGG | - | chr4.2:34512027-34512046 | MS.gene90950:intron | 35.0% | |
| CACCACTTATAATCGTCTTT+CGG | + | chr4.2:34512256-34512275 | None:intergenic | 35.0% | |
| CCATTAGAATTGGTCAAGAA+TGG | + | chr4.2:34513464-34513483 | None:intergenic | 35.0% | |
| CCATTCTTGACCAATTCTAA+TGG | - | chr4.2:34513461-34513480 | MS.gene90950:intron | 35.0% | |
| GAAAGTCTCGAGAAAATAGT+CGG | - | chr4.2:34512885-34512904 | MS.gene90950:intron | 35.0% | |
| GCAAACTCGTTAAAATGTTG+GGG | - | chr4.2:34513819-34513838 | MS.gene90950:intron | 35.0% | |
| GGTTATTGGATAAGTCAAAG+TGG | + | chr4.2:34513443-34513462 | None:intergenic | 35.0% | |
| GTCACTATCATCTGAATCAT+AGG | + | chr4.2:34511849-34511868 | None:intergenic | 35.0% | |
| TACATGCAGTCATGCAAAAA+GGG | + | chr4.2:34511928-34511947 | None:intergenic | 35.0% | |
| TGATGTCCAGTTGATTAAGA+AGG | - | chr4.2:34512977-34512996 | MS.gene90950:intron | 35.0% | |
| TTACATGCAGTCATGCAAAA+AGG | + | chr4.2:34511929-34511948 | None:intergenic | 35.0% | |
| TTTATAGATATGGACGAGTC+CGG | - | chr4.2:34514087-34514106 | MS.gene90950:CDS | 35.0% | |
| !! | AACTTCTTGTTATTTGGTGC+AGG | - | chr4.2:34514053-34514072 | MS.gene90950:intron | 35.0% |
| !! | AATTGTTTATGGGAGTGTCT+CGG | - | chr4.2:34512133-34512152 | MS.gene90950:CDS | 35.0% |
| !! | TACAACTAAGTGTCTGGTTT+TGG | + | chr4.2:34513656-34513675 | None:intergenic | 35.0% |
| AACTTCCCACAAATCTGTCT+TGG | + | chr4.2:34512298-34512317 | None:intergenic | 40.0% | |
| ACGTTCCAAGACAGATTTGT+GGG | - | chr4.2:34512290-34512309 | MS.gene90950:intron | 40.0% | |
| AGAAGCTTATGGTACCACTA+TGG | - | chr4.2:34513696-34513715 | MS.gene90950:intron | 40.0% | |
| AGGGAGAGAAATTGAAGAGA+AGG | + | chr4.2:34513073-34513092 | None:intergenic | 40.0% | |
| CGAAAGACGATTATAAGTGG+TGG | - | chr4.2:34512254-34512273 | MS.gene90950:intron | 40.0% | |
| GCAGAACTTAACACATCGTT+TGG | + | chr4.2:34513130-34513149 | None:intergenic | 40.0% | |
| GCAGATGATTCAAGGTTTAG+TGG | - | chr4.2:34512909-34512928 | MS.gene90950:intron | 40.0% | |
| GGGACACCTTCATACAATAT+TGG | - | chr4.2:34513947-34513966 | MS.gene90950:intron | 40.0% | |
| TACGTTCCAAGACAGATTTG+TGG | - | chr4.2:34512289-34512308 | MS.gene90950:intron | 40.0% | |
| TCCACATGACATTCATAGCA+AGG | + | chr4.2:34513209-34513228 | None:intergenic | 40.0% | |
| TGTTCCTGATAAGAGTAGCA+AGG | + | chr4.2:34512941-34512960 | None:intergenic | 40.0% | |
| TTCTTCCTGCAATGATGAAC+TGG | - | chr4.2:34512534-34512553 | MS.gene90950:intron | 40.0% | |
| TTGACCTTGCTACTCTTATC+AGG | - | chr4.2:34512934-34512953 | MS.gene90950:intron | 40.0% | |
| TTGGATAAGTCAAAGTGGTG+AGG | + | chr4.2:34513438-34513457 | None:intergenic | 40.0% | |
| ! | AATTTTACCTTCCCTATCCG+AGG | + | chr4.2:34513891-34513910 | None:intergenic | 40.0% |
| ! | CAGATTGAGAGCACATCAAT+GGG | + | chr4.2:34512803-34512822 | None:intergenic | 40.0% |
| ! | GAATGTCATGTGGAAGTACA+TGG | - | chr4.2:34513215-34513234 | MS.gene90950:intron | 40.0% |
| ! | TCCTTGCTATGAATGTCATG+TGG | - | chr4.2:34513205-34513224 | MS.gene90950:intron | 40.0% |
| CAAAGTCGAAAGAACGACCT+CGG | - | chr4.2:34513871-34513890 | MS.gene90950:intron | 45.0% | |
| CCATTGATGTGCTCTCAATC+TGG | - | chr4.2:34512801-34512820 | MS.gene90950:intron | 45.0% | |
| CTGTCTTGGAACGTAAGATG+AGG | + | chr4.2:34512284-34512303 | None:intergenic | 45.0% | |
| GGCCGAAAGACGATTATAAG+TGG | - | chr4.2:34512251-34512270 | MS.gene90950:intron | 45.0% | |
| GTCGTTCTTTCGACTTTGCT+AGG | + | chr4.2:34513869-34513888 | None:intergenic | 45.0% | |
| TAGTCGGTGCAGATGATTCA+AGG | - | chr4.2:34512901-34512920 | MS.gene90950:intron | 45.0% | |
| TCCAACCAGTTCATCATTGC+AGG | + | chr4.2:34512542-34512561 | None:intergenic | 45.0% | |
| TCCTGCAATGATGAACTGGT+TGG | - | chr4.2:34512538-34512557 | MS.gene90950:intron | 45.0% | |
| ! | CCAGATTGAGAGCACATCAA+TGG | + | chr4.2:34512804-34512823 | None:intergenic | 45.0% |
| ! | GGGGAGCTGTTTCACATATT+CGG | - | chr4.2:34513838-34513857 | MS.gene90950:intron | 45.0% |
| CGAAAGAACGACCTCGGATA+GGG | - | chr4.2:34513877-34513896 | MS.gene90950:intron | 50.0% | |
| TCGAAAGAACGACCTCGGAT+AGG | - | chr4.2:34513876-34513895 | MS.gene90950:intron | 50.0% | |
| ! | CATGTGGAAGTACATGGAGC+AGG | - | chr4.2:34513221-34513240 | MS.gene90950:intron | 50.0% |
| !! | GTTTATGGGAGTGTCTCGGT+AGG | - | chr4.2:34512137-34512156 | MS.gene90950:CDS | 50.0% |
| AGAACGACCTCGGATAGGGA+AGG | - | chr4.2:34513881-34513900 | MS.gene90950:intron | 55.0% | |
| CCACTCGTTCGCACGTGCAC+CGG | + | chr4.2:34514109-34514128 | None:intergenic | 65.0% | |
| CCGGTGCACGTGCGAACGAG+TGG | - | chr4.2:34514106-34514125 | MS.gene90950:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 34511839 | 34514140 | 34511839 | ID=MS.gene90950 |
| chr4.2 | mRNA | 34511839 | 34514140 | 34511839 | ID=MS.gene90950.t1;Parent=MS.gene90950 |
| chr4.2 | exon | 34514075 | 34514140 | 34514075 | ID=MS.gene90950.t1.exon1;Parent=MS.gene90950.t1 |
| chr4.2 | CDS | 34514075 | 34514140 | 34514075 | ID=cds.MS.gene90950.t1;Parent=MS.gene90950.t1 |
| chr4.2 | exon | 34512981 | 34513127 | 34512981 | ID=MS.gene90950.t1.exon2;Parent=MS.gene90950.t1 |
| chr4.2 | CDS | 34512981 | 34513127 | 34512981 | ID=cds.MS.gene90950.t1;Parent=MS.gene90950.t1 |
| chr4.2 | exon | 34512737 | 34512793 | 34512737 | ID=MS.gene90950.t1.exon3;Parent=MS.gene90950.t1 |
| chr4.2 | CDS | 34512737 | 34512793 | 34512737 | ID=cds.MS.gene90950.t1;Parent=MS.gene90950.t1 |
| chr4.2 | exon | 34512077 | 34512211 | 34512077 | ID=MS.gene90950.t1.exon4;Parent=MS.gene90950.t1 |
| chr4.2 | CDS | 34512077 | 34512211 | 34512077 | ID=cds.MS.gene90950.t1;Parent=MS.gene90950.t1 |
| chr4.2 | exon | 34511839 | 34511904 | 34511839 | ID=MS.gene90950.t1.exon5;Parent=MS.gene90950.t1 |
| chr4.2 | CDS | 34511839 | 34511904 | 34511839 | ID=cds.MS.gene90950.t1;Parent=MS.gene90950.t1 |
| Gene Sequence |
| Protein sequence |
