AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70143


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70143.t1 MTR_8g095320 98.292 527 9 0 1 527 1 527 0.0 1064
MS.gene70143.t1 MTR_3g097290 84.369 499 78 0 25 523 25 523 0.0 848
MS.gene70143.t1 MTR_3g097290 82.584 356 62 0 25 380 25 380 0.0 610
MS.gene70143.t1 MTR_3g104260 73.054 334 90 0 111 444 92 425 6.93e-177 506
MS.gene70143.t1 MTR_4g019850 72.455 334 92 0 111 444 95 428 6.72e-176 504
MS.gene70143.t1 MTR_4g019850 72.455 334 92 0 111 444 106 439 1.06e-175 504
MS.gene70143.t1 MTR_3g104260 70.833 192 56 0 111 302 92 283 1.68e-88 276
MS.gene70143.t1 MTR_4g087690 95.588 68 3 0 407 474 5 72 1.59e-36 131
MS.gene70143.t1 MTR_7g056307 63.043 46 17 0 393 438 88 133 2.75e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70143.t1 AT2G30390 84.176 455 60 2 82 524 56 510 0.0 756
MS.gene70143.t1 AT2G30390 82.366 465 60 3 82 524 56 520 0.0 746
MS.gene70143.t1 AT5G26030 71.176 340 98 0 109 448 84 423 0.0 525
MS.gene70143.t1 AT5G26030 71.176 340 98 0 109 448 84 423 0.0 525

Find 138 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAATCATGTAGATTAAA+AGG 0.157500 4.1:+7452446 MS.gene70143:intron
TAGAATCTGGAATAGAAAAT+TGG 0.187973 4.1:+7454544 MS.gene70143:CDS
AATAATTGAACTTGGGAAAA+AGG 0.214551 4.1:+7454328 MS.gene70143:CDS
GGGGAATATTGCCCTTATTT+AGG 0.242136 4.1:+7455181 MS.gene70143:CDS
TATTCAAGTTCACCTAAATA+AGG 0.244445 4.1:-7455193 None:intergenic
GCATAGCCTTCTTTGCTCTT+TGG 0.251316 4.1:-7451404 None:intergenic
TTAATTGAAAATGAGCTAAA+AGG 0.267528 4.1:+7452738 MS.gene70143:CDS
TGCATACACACTTGCTTATC+AGG 0.269635 4.1:+7453804 MS.gene70143:CDS
CAAGGCTGATGTTACCTAAT+TGG 0.271395 4.1:-7454374 None:intergenic
GTATCTGATACGCCTCTTAT+TGG 0.284907 4.1:+7451111 MS.gene70143:CDS
AATTATTGTCTCATCTGTAT+AGG 0.287087 4.1:-7454312 None:intergenic
AAAGAATTGGCTTTAGAATC+TGG 0.287435 4.1:+7454531 MS.gene70143:CDS
ATTATTGTCTCATCTGTATA+GGG 0.299242 4.1:-7454311 None:intergenic
TTGACAGTCTTTGGTTCCCC+TGG 0.302419 4.1:+7454975 MS.gene70143:intron
CCCCATTCCCACACCAATAT+TGG 0.313869 4.1:-7455054 None:intergenic
CCATTGAAAACTTGCATTGT+TGG 0.321899 4.1:+7450982 MS.gene70143:CDS
TGTATGTTGGCATGCGTTAC+TGG 0.324474 4.1:+7451869 MS.gene70143:CDS
ACCAATATTGGTGTGGGAAT+GGG 0.331640 4.1:+7455053 MS.gene70143:CDS
GTTTGCTGGCCGTACCAATT+AGG 0.332495 4.1:+7454360 MS.gene70143:CDS
CTAAAGCTCCCACAGGTAAA+AGG 0.335562 4.1:-7451068 None:intergenic
GGGCAGTGTAGAAGAGTTAT+TGG 0.341489 4.1:+7454996 MS.gene70143:CDS
AGAATCTGGAATAGAAAATT+GGG 0.348352 4.1:+7454545 MS.gene70143:CDS
TGGGGCCGTGTTCCTGCTCT+TGG 0.355451 4.1:+7454564 MS.gene70143:CDS
TGATGTTGAGTACAAAGAAT+TGG 0.371964 4.1:+7454518 MS.gene70143:CDS
TGGTTCAAGTTTGCGTCTCT+TGG 0.386465 4.1:+7452528 MS.gene70143:CDS
GAAGTTGAAGGGGCACGAAT+TGG 0.396096 4.1:-7450617 None:intergenic
ATTCAAGTTCACCTAAATAA+GGG 0.403742 4.1:-7455192 None:intergenic
TCCTCCATCTCTGCTTTGTA+TGG 0.410650 4.1:-7453733 None:intergenic
CACCAATATTGGTGTGGGAA+TGG 0.422437 4.1:+7455052 MS.gene70143:CDS
ACGGCCATCGCACCAACATA+TGG 0.424661 4.1:-7454639 None:intergenic
GTCTCTTGGAGAGCATATTC+CGG 0.431661 4.1:+7452542 MS.gene70143:CDS
GCCTCTTCGACATACGCAAC+TGG 0.434176 4.1:-7453703 None:intergenic
AGCGTACCTGTCGAGCTTCA+AGG 0.441814 4.1:-7454668 None:intergenic
ATTGAAAATTGTGGATAAAG+TGG 0.445577 4.1:-7452496 None:intergenic
TACCAGCTCAATAGCCTCTT+CGG 0.451215 4.1:-7451902 None:intergenic
TTTCCAAGCAATCACTCAAC+AGG 0.455055 4.1:+7451043 MS.gene70143:CDS
GTATTACTGGATCGGCAAAA+AGG 0.455393 4.1:-7451212 None:intergenic
TGAAATCATGTAGATTAAAA+GGG 0.457587 4.1:+7452447 MS.gene70143:intron
GGAGTTGCCACCACCAATAT+TGG 0.459023 4.1:+7455041 MS.gene70143:CDS
GGACAAAGAGTGCTGAAACT+TGG 0.466826 4.1:+7455079 MS.gene70143:CDS
CAAAAGGTGTATCGATGCTC+TGG 0.467208 4.1:+7450928 MS.gene70143:CDS
AAATGAAGTAGTACCTTCTC+TGG 0.467324 4.1:-7452771 None:intergenic
GTGTTATTGTTGAACCTTGG+AGG 0.476838 4.1:+7451150 MS.gene70143:CDS
TGCACATCATCTAGAGTCTC+TGG 0.484642 4.1:-7451174 None:intergenic
ATGATATTCTTCAGCGCACA+TGG 0.489098 4.1:+7453676 MS.gene70143:CDS
ATGGTCTGAAGCACAACCCT+TGG 0.489226 4.1:+7451020 MS.gene70143:CDS
TGAAGAAAACTAAATAACCT+TGG 0.490599 4.1:-7451344 None:intergenic
TGACAGTCTTTGGTTCCCCT+GGG 0.491554 4.1:+7454976 MS.gene70143:intron
CCAACGTGAAGGATACATAA+AGG 0.495643 4.1:+7452704 MS.gene70143:CDS
CCAATATTGGTGTGGGAATG+GGG 0.495656 4.1:+7455054 MS.gene70143:CDS
GATGAGACAATAATTGAACT+TGG 0.502371 4.1:+7454320 MS.gene70143:CDS
GAAGGCTATGCTTCCATTGG+TGG 0.502519 4.1:+7451416 MS.gene70143:CDS
GCATCAGTCATGCGTCTAAG+AGG 0.503158 4.1:-7451446 None:intergenic
AGAGCACCAAAGAGCAAAGA+AGG 0.504484 4.1:+7451398 MS.gene70143:CDS
ACCCACTTTCATTTCAGACT+TGG 0.509928 4.1:+7454593 MS.gene70143:CDS
GGCTATGCTTCCATTGGTGG+TGG 0.511065 4.1:+7451419 MS.gene70143:CDS
ATCTTATCATCACCAATAAG+AGG 0.511634 4.1:-7451123 None:intergenic
TCAATAGCCTCTTCGGTGAA+TGG 0.511788 4.1:-7451895 None:intergenic
GGCAATCTGTACCACTCAAA+AGG 0.512114 4.1:+7450912 MS.gene70143:CDS
GTGCCTGTTGAGTGATTGCT+TGG 0.517670 4.1:-7451046 None:intergenic
TCGAGCTTCAAGGTTTGAAA+CGG 0.518947 4.1:-7454658 None:intergenic
TTCAAACCTTGAAGCTCGAC+AGG 0.520547 4.1:+7454662 MS.gene70143:CDS
ATCATGTAGATTAAAAGGGA+TGG 0.526806 4.1:+7452451 MS.gene70143:intron
TATGAGCAAGAAGAAGTTGA+AGG 0.530273 4.1:-7450629 None:intergenic
TATTGGTGTGGGAATGGGGA+TGG 0.531632 4.1:+7455058 MS.gene70143:CDS
CGGCCATCGCACCAACATAT+GGG 0.532880 4.1:-7454638 None:intergenic
CATCAGTCATGCGTCTAAGA+GGG 0.534210 4.1:-7451445 None:intergenic
TGCCAAGTCTGAAATGAAAG+TGG 0.536826 4.1:-7454595 None:intergenic
GGAGTGTTATTGTTGAACCT+TGG 0.536999 4.1:+7451147 MS.gene70143:CDS
ATAACTCTTCTACACTGCCC+AGG 0.537496 4.1:-7454993 None:intergenic
ATGCTTATACAGAGTAGAGT+TGG 0.538598 4.1:+7454269 MS.gene70143:intron
ATTGTTGGCAAATTTACTCC+AGG 0.538933 4.1:+7450997 MS.gene70143:CDS
GTTGCGTATGTCGAAGAGGC+TGG 0.539982 4.1:+7453706 MS.gene70143:CDS
CACCGAAGAGGCTATTGAGC+TGG 0.540788 4.1:+7451900 MS.gene70143:CDS
TTAGAAGTCACCACTGGAGA+GGG 0.541942 4.1:+7455144 MS.gene70143:CDS
AAGAGGGGATCCACCACCAA+TGG 0.548779 4.1:-7451429 None:intergenic
GGAGTGTGTGGATTTAATCA+TGG 0.549813 4.1:+7453753 MS.gene70143:CDS
AAAGAAGGCTATGCTTCCAT+TGG 0.556763 4.1:+7451413 MS.gene70143:CDS
GTGGGTTCACATCCAAGAGC+AGG 0.558709 4.1:-7454576 None:intergenic
GCACAAGTGCGGCAAGAATG+AGG 0.559654 4.1:-7450659 None:intergenic
AGCAGAGATGGAGGAGTGTG+TGG 0.560959 4.1:+7453741 MS.gene70143:CDS
GGTTGTGCTTCAGACCATCC+TGG 0.561646 4.1:-7451015 None:intergenic
ATGAGCAAGAAGAAGTTGAA+GGG 0.565066 4.1:-7450628 None:intergenic
GAGACGCAAACTTGAACCAC+TGG 0.565410 4.1:-7452524 None:intergenic
TGATCCATACAAAGCAGAGA+TGG 0.567879 4.1:+7453729 MS.gene70143:CDS
CATTCCCACACCAATATTGG+TGG 0.572403 4.1:-7455051 None:intergenic
CTTATTGGTGATGATAAGAT+CGG 0.572457 4.1:+7451126 MS.gene70143:CDS
TAGACGCATGACTGATGCAC+AGG 0.574150 4.1:+7451451 MS.gene70143:CDS
AGCATATGACTCACAACGTA+GGG 0.577719 4.1:+7455020 MS.gene70143:CDS
AAGCGAGAGTATTACTGGAT+CGG 0.581846 4.1:-7451220 None:intergenic
TAACTCTTCTACACTGCCCA+GGG 0.581883 4.1:-7454992 None:intergenic
TTGGCAAATTTACTCCAGGA+TGG 0.585479 4.1:+7451001 MS.gene70143:CDS
TCCCACACCAATATTGGTGG+TGG 0.587248 4.1:-7455048 None:intergenic
AAGAGTGCTGAAACTTGGAA+TGG 0.588223 4.1:+7455084 MS.gene70143:CDS
CCTTTATGTATCCTTCACGT+TGG 0.589262 4.1:-7452704 None:intergenic
TCTCCCATATGTTGGTGCGA+TGG 0.590320 4.1:+7454635 MS.gene70143:CDS
TGCCACCACCAATATTGGTG+TGG 0.592628 4.1:+7455046 MS.gene70143:CDS
ATGAGACAATAATTGAACTT+GGG 0.593413 4.1:+7454321 MS.gene70143:CDS
GTCCCAGCAAAAGTGTATGT+TGG 0.593607 4.1:+7451856 MS.gene70143:CDS
TTTAGAAGTCACCACTGGAG+AGG 0.595864 4.1:+7455143 MS.gene70143:CDS
GCCACCACCAATATTGGTGT+GGG 0.603981 4.1:+7455047 MS.gene70143:CDS
CACATCCAAGAGCAGGAACA+CGG 0.605645 4.1:-7454569 None:intergenic
CTAGAGTCTCTGGACCTCCA+AGG 0.606445 4.1:-7451164 None:intergenic
GCCAAGTCTGAAATGAAAGT+GGG 0.608379 4.1:-7454594 None:intergenic
GAAGTTACTAAAGCTCCCAC+AGG 0.611643 4.1:-7451075 None:intergenic
TGATATTCTTCAGCGCACAT+GGG 0.611904 4.1:+7453677 MS.gene70143:CDS
GTAGAGTTGGACCTGTGGAA+TGG 0.613496 4.1:+7454282 MS.gene70143:CDS
ACAGATACAAATTGAGCCAG+TGG 0.614604 4.1:-7451371 None:intergenic
TCCAGTTGCGTATGTCGAAG+AGG 0.617127 4.1:+7453702 MS.gene70143:CDS
TCGATGCTCTGGAGGCCACA+CGG 0.624069 4.1:+7450939 MS.gene70143:CDS
ATAAGGGCAATATTCCCCAC+TGG 0.625224 4.1:-7455176 None:intergenic
CTGGTCGAAATTGAAAATTG+TGG 0.628745 4.1:-7452505 None:intergenic
CTGATGTTACCTAATTGGTA+CGG 0.629091 4.1:-7454369 None:intergenic
GAATCTGGAATAGAAAATTG+GGG 0.630181 4.1:+7454546 MS.gene70143:CDS
AGTGATTGCTTGGAAACCAA+GGG 0.631296 4.1:-7451036 None:intergenic
TCCATACAAAGCAGAGATGG+AGG 0.634295 4.1:+7453732 MS.gene70143:CDS
TGAAGGATACATAAAGGCAA+TGG 0.635320 4.1:+7452710 MS.gene70143:CDS
ATTGAGAGTCTCCCATATGT+TGG 0.638627 4.1:+7454627 MS.gene70143:CDS
TAGAAGTCACCACTGGAGAG+GGG 0.642877 4.1:+7455145 MS.gene70143:CDS
AGCACACGGTAATACCTTCG+TGG 0.647603 4.1:+7452679 MS.gene70143:CDS
TGAGCAAGAAGAAGTTGAAG+GGG 0.653348 4.1:-7450627 None:intergenic
CTGGCATCCATTCACCGAAG+AGG 0.654462 4.1:+7451888 MS.gene70143:CDS
GATATTCTTCAGCGCACATG+GGG 0.656107 4.1:+7453678 MS.gene70143:CDS
ATAAGCAAGTGTGTATGCAT+TGG 0.657766 4.1:-7453800 None:intergenic
ATCAGTCATGCGTCTAAGAG+GGG 0.658159 4.1:-7451444 None:intergenic
AAGGTGTATCGATGCTCTGG+AGG 0.658242 4.1:+7450931 MS.gene70143:CDS
AGGATATCATACGATTGCCA+AGG 0.659302 4.1:+7451327 MS.gene70143:intron
CAGCATATGACTCACAACGT+AGG 0.661889 4.1:+7455019 MS.gene70143:CDS
GAGTGATTGCTTGGAAACCA+AGG 0.662624 4.1:-7451037 None:intergenic
ACAGAGTAGAGTTGGACCTG+TGG 0.666508 4.1:+7454277 MS.gene70143:intron
CCTTCGTGGTACCAACGTGA+AGG 0.674862 4.1:+7452693 MS.gene70143:CDS
TCTAGTCAACATGCAGCACA+CGG 0.678864 4.1:+7452665 MS.gene70143:CDS
TGAGTGGTACAGATTGCCTG+TGG 0.695911 4.1:-7450907 None:intergenic
AATTACGAGAAGCACAAGTG+CGG 0.707850 4.1:-7450670 None:intergenic
AACTCTTCTACACTGCCCAG+GGG 0.707896 4.1:-7454991 None:intergenic
ATGCTCTGGAGGCCACACGG+AGG 0.717399 4.1:+7450942 MS.gene70143:CDS
CGTTACTAGAAGCCTCCGTG+TGG 0.725437 4.1:-7450954 None:intergenic
CCTTCACGTTGGTACCACGA+AGG 0.743481 4.1:-7452693 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAAATTGACATATT+TGG - chr4.1:7452111-7452130 None:intergenic 10.0%
!! CTATAAAAATAAAGAATATT+AGG - chr4.1:7450880-7450899 None:intergenic 10.0%
!! TAAAAATTAGAAAAAGTAAT+TGG + chr4.1:7452085-7452104 MS.gene70143:intron 10.0%
!!! AAGAACTTTTTAAAAAAAAA+TGG + chr4.1:7452174-7452193 MS.gene70143:intron 10.0%
!!! CTAATATTCTTTATTTTTAT+AGG + chr4.1:7450878-7450897 MS.gene70143:intron 10.0%
!! AAATTTCAGCAAAAAATTAT+TGG - chr4.1:7453089-7453108 None:intergenic 15.0%
!! AATAACCTTAGTAAAATATT+TGG - chr4.1:7450758-7450777 None:intergenic 15.0%
!! TAGTGAGAATTTAAAAAAAA+TGG - chr4.1:7451636-7451655 None:intergenic 15.0%
!! TTTAAAAAAAATGGCTTAAA+CGG - chr4.1:7451627-7451646 None:intergenic 15.0%
!!! TACTTTTTTGTTAGAAATTT+GGG + chr4.1:7453827-7453846 MS.gene70143:intron 15.0%
!!! TCATTTATATTTTTGTATTG+TGG + chr4.1:7454700-7454719 MS.gene70143:intron 15.0%
!!! TTGATAATATACAAATGTTT+AGG - chr4.1:7452824-7452843 None:intergenic 15.0%
!! AACACAATAACAATTGAAAA+AGG - chr4.1:7450718-7450737 None:intergenic 20.0%
!! AACATCAATAATATTTGAGA+AGG + chr4.1:7453530-7453549 MS.gene70143:intron 20.0%
!! AGTTTATTCAAGAAGATAAT+TGG - chr4.1:7452316-7452335 None:intergenic 20.0%
!! ATAAATAACACTATCACATT+AGG + chr4.1:7453452-7453471 MS.gene70143:intron 20.0%
!! ATAATGCATTGTTAGAAATT+TGG - chr4.1:7454248-7454267 None:intergenic 20.0%
!! ATTGTTAGAAATTTGGAAAA+AGG - chr4.1:7454241-7454260 None:intergenic 20.0%
!! ATTTATGCAAACAACATTAA+AGG + chr4.1:7452148-7452167 MS.gene70143:intron 20.0%
!! CAAAATTTACACATTCAAAA+TGG - chr4.1:7452242-7452261 None:intergenic 20.0%
!! CCAATTTATTATCTAACTTT+CGG + chr4.1:7452604-7452623 MS.gene70143:intron 20.0%
!! TAAAAATACATCACTAAAAG+TGG - chr4.1:7451986-7452005 None:intergenic 20.0%
!! TATACAGAAAATGTAACTAA+CGG - chr4.1:7451300-7451319 None:intergenic 20.0%
!! TCGTAATAATAGTATTAGAT+TGG + chr4.1:7452204-7452223 MS.gene70143:intron 20.0%
!! TCTAAAAAAATATGCTGATA+TGG - chr4.1:7454870-7454889 None:intergenic 20.0%
!! TGAAATCATGTAGATTAAAA+GGG + chr4.1:7452447-7452466 MS.gene70143:intron 20.0%
!! TTAATTGAAAATGAGCTAAA+AGG + chr4.1:7452738-7452757 MS.gene70143:CDS 20.0%
!! TTGAAATCATGTAGATTAAA+AGG + chr4.1:7452446-7452465 MS.gene70143:intron 20.0%
!! TTTAATCTACATGATTTCAA+AGG - chr4.1:7452446-7452465 None:intergenic 20.0%
!!! AGTAACCAAATATTTTACTA+AGG + chr4.1:7450750-7450769 MS.gene70143:intron 20.0%
!!! GAATATTTTATAGTAATCAC+CGG - chr4.1:7452564-7452583 None:intergenic 20.0%
!!! GATGTATTTTTACAAGTTTT+AGG + chr4.1:7451994-7452013 MS.gene70143:intron 20.0%
!!! GTACTTTTTTGTTAGAAATT+TGG + chr4.1:7453826-7453845 MS.gene70143:intron 20.0%
!!! GTGTAAATTTTGTATTTCTT+GGG + chr4.1:7452250-7452269 MS.gene70143:intron 20.0%
!!! TGTGTAAATTTTGTATTTCT+TGG + chr4.1:7452249-7452268 MS.gene70143:intron 20.0%
!!! TTATATTTTTGTATTGTGGA+AGG + chr4.1:7454704-7454723 MS.gene70143:intron 20.0%
!!! TTTTGAAAAGAATCTATGTT+TGG + chr4.1:7453379-7453398 MS.gene70143:intron 20.0%
! AAAAACAGCAATTATATGAG+AGG - chr4.1:7451600-7451619 None:intergenic 25.0%
! AATAAACTTTAACCTTGGAA+CGG + chr4.1:7452328-7452347 MS.gene70143:intron 25.0%
! AATAATTGAACTTGGGAAAA+AGG + chr4.1:7454328-7454347 MS.gene70143:CDS 25.0%
! AATTATTGTCTCATCTGTAT+AGG - chr4.1:7454315-7454334 None:intergenic 25.0%
! ACAAACTGTTCAGAATATTA+TGG - chr4.1:7453989-7454008 None:intergenic 25.0%
! ATAATTGAACTTGGGAAAAA+GGG + chr4.1:7454329-7454348 MS.gene70143:CDS 25.0%
! ATATTAGGAATAGAAAATGG+TGG - chr4.1:7453183-7453202 None:intergenic 25.0%
! ATGAGACAATAATTGAACTT+GGG + chr4.1:7454321-7454340 MS.gene70143:CDS 25.0%
! ATTATTGTCTCATCTGTATA+GGG - chr4.1:7454314-7454333 None:intergenic 25.0%
! ATTGAAAATTGTGGATAAAG+TGG - chr4.1:7452499-7452518 None:intergenic 25.0%
! CATGATTTCAAAGGAAAAAT+TGG - chr4.1:7452437-7452456 None:intergenic 25.0%
! CCGAAAGTTAGATAATAAAT+TGG - chr4.1:7452607-7452626 None:intergenic 25.0%
! CGAATATTAGGAATAGAAAA+TGG - chr4.1:7453186-7453205 None:intergenic 25.0%
! GCAAAAAGGTTAAACAAAAA+AGG - chr4.1:7451201-7451220 None:intergenic 25.0%
! GTAGCAATTGAAAAAATCAA+GGG - chr4.1:7453115-7453134 None:intergenic 25.0%
! GTTTGATTACAATGTCAAAT+TGG + chr4.1:7451939-7451958 MS.gene70143:intron 25.0%
! TAAACATTATACCATAAGCT+TGG - chr4.1:7453905-7453924 None:intergenic 25.0%
! TCTTGAATAAACTTTAACCT+TGG + chr4.1:7452323-7452342 MS.gene70143:intron 25.0%
! TGAAGAAAACTAAATAACCT+TGG - chr4.1:7451347-7451366 None:intergenic 25.0%
! TGTAGCAATTGAAAAAATCA+AGG - chr4.1:7453116-7453135 None:intergenic 25.0%
! TTACTCTGTTTGATTAACTT+AGG + chr4.1:7452940-7452959 MS.gene70143:intron 25.0%
! TTCGGTTGTGAATTATTTAT+TGG + chr4.1:7452622-7452641 MS.gene70143:intron 25.0%
! TTGTTTGTAGTTTAGTTGAT+AGG + chr4.1:7450780-7450799 MS.gene70143:intron 25.0%
! TTTCAGCAAAAAATTATTGG+CGG - chr4.1:7453086-7453105 None:intergenic 25.0%
! TTTGATTAACTTAGGCAATT+GGG + chr4.1:7452948-7452967 MS.gene70143:intron 25.0%
!! AGAATCTGGAATAGAAAATT+GGG + chr4.1:7454545-7454564 MS.gene70143:CDS 25.0%
!! CAACTTCGTTTATCTTTTAT+AGG + chr4.1:7453013-7453032 MS.gene70143:intron 25.0%
!! CATTTTCTGTATAATTATGC+AGG + chr4.1:7451307-7451326 MS.gene70143:intron 25.0%
!! CTTTTTCTAATACTATGATG+CGG + chr4.1:7451711-7451730 MS.gene70143:intron 25.0%
!! TAGAATCTGGAATAGAAAAT+TGG + chr4.1:7454544-7454563 MS.gene70143:CDS 25.0%
!! TATAGGTTTCGTTGTATTTT+TGG + chr4.1:7453030-7453049 MS.gene70143:intron 25.0%
!! TGTGATCTAACAAAAAGTTT+TGG + chr4.1:7454948-7454967 MS.gene70143:intron 25.0%
!!! GTATTTTTACAAGTTTTAGG+AGG + chr4.1:7451997-7452016 MS.gene70143:intron 25.0%
!!! TGGTTTAATTTGCGAATATT+AGG - chr4.1:7453198-7453217 None:intergenic 25.0%
AAAAAAATGGCTTAAACGGT+TGG - chr4.1:7451623-7451642 None:intergenic 30.0%
AAAAAGCTAATGAAAGGAGT+TGG - chr4.1:7453140-7453159 None:intergenic 30.0%
AAGGAAAAATTGGTCATGAT+TGG - chr4.1:7452427-7452446 None:intergenic 30.0%
AGTCCATTGTAAAATCTCAA+TGG - chr4.1:7451661-7451680 None:intergenic 30.0%
ATCATGTAGATTAAAAGGGA+TGG + chr4.1:7452451-7452470 MS.gene70143:intron 30.0%
ATCTTATCATCACCAATAAG+AGG - chr4.1:7451126-7451145 None:intergenic 30.0%
GAAAAACACAATTTCATACG+AGG - chr4.1:7450826-7450845 None:intergenic 30.0%
GACTTTCGAATTGTTAGATA+GGG + chr4.1:7451519-7451538 MS.gene70143:intron 30.0%
GATGAGACAATAATTGAACT+TGG + chr4.1:7454320-7454339 MS.gene70143:CDS 30.0%
GATGGAAAAAAGCTAATGAA+AGG - chr4.1:7453146-7453165 None:intergenic 30.0%
GGTTGAGTGATACTAATATT+TGG + chr4.1:7454435-7454454 MS.gene70143:intron 30.0%
GTGGATTTGAATATTTCAGA+TGG - chr4.1:7453164-7453183 None:intergenic 30.0%
GTGTACAGAAAAAAGTTATC+AGG - chr4.1:7451487-7451506 None:intergenic 30.0%
GTTTGATTAACTTAGGCAAT+TGG + chr4.1:7452947-7452966 MS.gene70143:intron 30.0%
TACGAACTAAATTCAGTATC+TGG - chr4.1:7451568-7451587 None:intergenic 30.0%
TAGTCAGTATCAGATATTTC+TGG + chr4.1:7452884-7452903 MS.gene70143:intron 30.0%
TATTGAGAATTTGTGCAATG+CGG + chr4.1:7453348-7453367 MS.gene70143:intron 30.0%
TGACTTTCGAATTGTTAGAT+AGG + chr4.1:7451518-7451537 MS.gene70143:intron 30.0%
TGATGTTGAGTACAAAGAAT+TGG + chr4.1:7454518-7454537 MS.gene70143:CDS 30.0%
TGCAACAAAAATTAGTCACT+AGG - chr4.1:7453652-7453671 None:intergenic 30.0%
TTCAGCAAAAAATTATTGGC+GGG - chr4.1:7453085-7453104 None:intergenic 30.0%
! AGTCCATTGAGATTTTACAA+TGG + chr4.1:7451655-7451674 MS.gene70143:intron 30.0%
! ATTAATACTTCTAGAAACCG+AGG - chr4.1:7453855-7453874 None:intergenic 30.0%
! CTGATAATGATTCTCTATAC+AGG + chr4.1:7451798-7451817 MS.gene70143:intron 30.0%
! GAATCTGGAATAGAAAATTG+GGG + chr4.1:7454546-7454565 MS.gene70143:CDS 30.0%
! GTGAGGTTAAATTTTCAAAG+AGG - chr4.1:7453303-7453322 None:intergenic 30.0%
! TAGTGACTAATTTTTGTTGC+AGG + chr4.1:7453651-7453670 MS.gene70143:intron 30.0%
! TTAATACTTCTAGAAACCGA+GGG - chr4.1:7453854-7453873 None:intergenic 30.0%
!! AAAGAATTGGCTTTAGAATC+TGG + chr4.1:7454531-7454550 MS.gene70143:CDS 30.0%
!! AATATTATGGCCTTGTTGAT+AGG - chr4.1:7453976-7453995 None:intergenic 30.0%
!! AGTATCAGATATTTCTGGTT+AGG + chr4.1:7452889-7452908 MS.gene70143:intron 30.0%
!! ATATTATGGCCTTGTTGATA+GGG - chr4.1:7453975-7453994 None:intergenic 30.0%
!! CTTATTGGTGATGATAAGAT+CGG + chr4.1:7451126-7451145 MS.gene70143:CDS 30.0%
!!! TATTTTTGGTCCTGCTATTA+TGG + chr4.1:7453044-7453063 MS.gene70143:intron 30.0%
AAAGGGAGTAAAAAGTTTGC+TGG + chr4.1:7454346-7454365 MS.gene70143:CDS 35.0%
AAATGAAGTAGTACCTTCTC+TGG - chr4.1:7452774-7452793 None:intergenic 35.0%
AACTTTCACCCAAAATTGTG+GGG + chr4.1:7453261-7453280 MS.gene70143:intron 35.0%
AATTGTGGGGAATCTTGAAA+AGG + chr4.1:7453274-7453293 MS.gene70143:intron 35.0%
ACTAATTTAGCGACACTTGA+AGG - chr4.1:7453329-7453348 None:intergenic 35.0%
ATAAGCAAGTGTGTATGCAT+TGG - chr4.1:7453803-7453822 None:intergenic 35.0%
ATGAGCAAGAAGAAGTTGAA+GGG - chr4.1:7450631-7450650 None:intergenic 35.0%
ATGCTTATACAGAGTAGAGT+TGG + chr4.1:7454269-7454288 MS.gene70143:intron 35.0%
ATTGAGAATTTGTGCAATGC+GGG + chr4.1:7453349-7453368 MS.gene70143:intron 35.0%
ATTGTTGGCAAATTTACTCC+AGG + chr4.1:7450997-7451016 MS.gene70143:CDS 35.0%
CAACTTTCACCCAAAATTGT+GGG + chr4.1:7453260-7453279 MS.gene70143:intron 35.0%
CAATTCGAAAGTCAAATGTG+TGG - chr4.1:7451512-7451531 None:intergenic 35.0%
CCATTGAAAACTTGCATTGT+TGG + chr4.1:7450982-7451001 MS.gene70143:CDS 35.0%
CGAGTTTCGGAAAAACTTTA+TGG - chr4.1:7453566-7453585 None:intergenic 35.0%
CGTTTAGTCATCAAGTCAAT+AGG + chr4.1:7454126-7454145 MS.gene70143:intron 35.0%
CTAGATACTCATCTTCTCTA+AGG - chr4.1:7452650-7452669 None:intergenic 35.0%
CTGATGTTACCTAATTGGTA+CGG - chr4.1:7454372-7454391 None:intergenic 35.0%
CTGGTCGAAATTGAAAATTG+TGG - chr4.1:7452508-7452527 None:intergenic 35.0%
GTATTCACCAAAGTAGCAAT+TGG + chr4.1:7453944-7453963 MS.gene70143:intron 35.0%
TACTTTGGTGAATACCATAC+TGG - chr4.1:7453939-7453958 None:intergenic 35.0%
TATGAGCAAGAAGAAGTTGA+AGG - chr4.1:7450632-7450651 None:intergenic 35.0%
TCAGATATGACCATAATAGC+AGG - chr4.1:7453057-7453076 None:intergenic 35.0%
TGAAAAAGGAACACTGACAT+AGG - chr4.1:7450704-7450723 None:intergenic 35.0%
TGAAGGATACATAAAGGCAA+TGG + chr4.1:7452710-7452729 MS.gene70143:CDS 35.0%
TTAGTCATCAAGTCAATAGG+TGG + chr4.1:7454129-7454148 MS.gene70143:intron 35.0%
TTGGTATTTCCCTATCAACA+AGG + chr4.1:7453963-7453982 MS.gene70143:intron 35.0%
! ACATGTGTGTATCCTTTTTC+CGG - chr4.1:7454838-7454857 None:intergenic 35.0%
! CAATTTTCAATTTCGACCAG+TGG + chr4.1:7452508-7452527 MS.gene70143:CDS 35.0%
! CAGGGTTAAAAAGGTACATT+TGG - chr4.1:7453218-7453237 None:intergenic 35.0%
! CCAACAATGCAAGTTTTCAA+TGG - chr4.1:7450985-7451004 None:intergenic 35.0%
! GAATTGTTAGATAGGGCATT+TGG + chr4.1:7451526-7451545 MS.gene70143:intron 35.0%
! GGAAATACCAATTGCTACTT+TGG - chr4.1:7453954-7453973 None:intergenic 35.0%
! TAAAAGCAGTTGCCACATTT+TGG - chr4.1:7454211-7454230 None:intergenic 35.0%
! TAGTTTTCTTCAAAAGCCAC+TGG + chr4.1:7451355-7451374 MS.gene70143:CDS 35.0%
! TCAAGATTCCCCACAATTTT+GGG - chr4.1:7453272-7453291 None:intergenic 35.0%
! TTCAAGATTCCCCACAATTT+TGG - chr4.1:7453273-7453292 None:intergenic 35.0%
! TTTTTATAGGCTATTGCCAC+AGG + chr4.1:7450891-7450910 MS.gene70143:intron 35.0%
!! TTTGGTTTGTTGACAGTCTT+TGG + chr4.1:7454966-7454985 MS.gene70143:intron 35.0%
!!! TTGTTTTTAGAAGTCACCAC+TGG + chr4.1:7455138-7455157 MS.gene70143:CDS 35.0%
AAAGAAGGCTATGCTTCCAT+TGG + chr4.1:7451413-7451432 MS.gene70143:CDS 40.0%
AAAGCTGTGAGTGCATAAAG+AGG - chr4.1:7454466-7454485 None:intergenic 40.0%
ACAGATACAAATTGAGCCAG+TGG - chr4.1:7451374-7451393 None:intergenic 40.0%
ACCAATATTGGTGTGGGAAT+GGG + chr4.1:7455053-7455072 MS.gene70143:CDS 40.0%
AGCATATGACTCACAACGTA+GGG + chr4.1:7455020-7455039 MS.gene70143:CDS 40.0%
AGGATATCATACGATTGCCA+AGG + chr4.1:7451327-7451346 MS.gene70143:intron 40.0%
AGTGATTGCTTGGAAACCAA+GGG - chr4.1:7451039-7451058 None:intergenic 40.0%
ATACCATACTGGCAGAACTA+AGG - chr4.1:7453928-7453947 None:intergenic 40.0%
ATCAGCACTAGAGCAATACA+AGG - chr4.1:7451783-7451802 None:intergenic 40.0%
ATGATATTCTTCAGCGCACA+TGG + chr4.1:7453676-7453695 MS.gene70143:CDS 40.0%
ATTGAGAGTCTCCCATATGT+TGG + chr4.1:7454627-7454646 MS.gene70143:CDS 40.0%
CAAGGCTGATGTTACCTAAT+TGG - chr4.1:7454377-7454396 None:intergenic 40.0%
CCAACGTGAAGGATACATAA+AGG + chr4.1:7452704-7452723 MS.gene70143:CDS 40.0%
CCAACTTTCACCCAAAATTG+TGG + chr4.1:7453259-7453278 MS.gene70143:intron 40.0%
CCACCAACCTTAAGCTTATA+AGG - chr4.1:7453593-7453612 None:intergenic 40.0%
CCTTATAAGCTTAAGGTTGG+TGG + chr4.1:7453590-7453609 MS.gene70143:intron 40.0%
CCTTTATGTATCCTTCACGT+TGG - chr4.1:7452707-7452726 None:intergenic 40.0%
CTTATAAGGAGCTCGAGTTT+CGG - chr4.1:7453579-7453598 None:intergenic 40.0%
GACAATGACATTTGACAACG+TGG - chr4.1:7454756-7454775 None:intergenic 40.0%
GCTCCTTATAAGCTTAAGGT+TGG + chr4.1:7453587-7453606 MS.gene70143:intron 40.0%
GGAGTGTGTGGATTTAATCA+TGG + chr4.1:7453753-7453772 MS.gene70143:CDS 40.0%
GTAGTCTTTGCATGGTTCTT+CGG - chr4.1:7454081-7454100 None:intergenic 40.0%
GTATCTGATACGCCTCTTAT+TGG + chr4.1:7451111-7451130 MS.gene70143:CDS 40.0%
GTATTACTGGATCGGCAAAA+AGG - chr4.1:7451215-7451234 None:intergenic 40.0%
TAGTCTTTGCATGGTTCTTC+GGG - chr4.1:7454080-7454099 None:intergenic 40.0%
TCAGCACTAGAGCAATACAA+GGG - chr4.1:7451782-7451801 None:intergenic 40.0%
TCGAGCTCCTTATAAGCTTA+AGG + chr4.1:7453583-7453602 MS.gene70143:intron 40.0%
TCGAGCTTCAAGGTTTGAAA+CGG - chr4.1:7454661-7454680 None:intergenic 40.0%
TGAGCAAGAAGAAGTTGAAG+GGG - chr4.1:7450630-7450649 None:intergenic 40.0%
TGATATTCTTCAGCGCACAT+GGG + chr4.1:7453677-7453696 MS.gene70143:CDS 40.0%
TGATCCATACAAAGCAGAGA+TGG + chr4.1:7453729-7453748 MS.gene70143:CDS 40.0%
TGATGACTAAACGTAGTCCT+CGG - chr4.1:7454119-7454138 None:intergenic 40.0%
TGCATACACACTTGCTTATC+AGG + chr4.1:7453804-7453823 MS.gene70143:CDS 40.0%
TTGAGAATTTGTGCAATGCG+GGG + chr4.1:7453350-7453369 MS.gene70143:intron 40.0%
TTGGCAAATTTACTCCAGGA+TGG + chr4.1:7451001-7451020 MS.gene70143:CDS 40.0%
TTTAAATGCCGAGTGGAACA+GGG - chr4.1:7453236-7453255 None:intergenic 40.0%
TTTCCAAGCAATCACTCAAC+AGG + chr4.1:7451043-7451062 MS.gene70143:CDS 40.0%
! AATTACGAGAAGCACAAGTG+CGG - chr4.1:7450673-7450692 None:intergenic 40.0%
! ATGCCAACATACACTTTTGC+TGG - chr4.1:7451862-7451881 None:intergenic 40.0%
! CTTTTTAACCCTGTTCCACT+CGG + chr4.1:7453225-7453244 MS.gene70143:intron 40.0%
! GGAGTGTTATTGTTGAACCT+TGG + chr4.1:7451147-7451166 MS.gene70143:CDS 40.0%
! GGGGAATATTGCCCTTATTT+AGG + chr4.1:7455181-7455200 MS.gene70143:CDS 40.0%
! GTGTTATTGTTGAACCTTGG+AGG + chr4.1:7451150-7451169 MS.gene70143:CDS 40.0%
! TGCCAACATACACTTTTGCT+GGG - chr4.1:7451861-7451880 None:intergenic 40.0%
! TGTTAGAAATTTGGGACCCT+CGG + chr4.1:7453835-7453854 MS.gene70143:intron 40.0%
! TTTTAAATGCCGAGTGGAAC+AGG - chr4.1:7453237-7453256 None:intergenic 40.0%
!! AAGAGTGCTGAAACTTGGAA+TGG + chr4.1:7455084-7455103 MS.gene70143:CDS 40.0%
!! AAGCGAGAGTATTACTGGAT+CGG - chr4.1:7451223-7451242 None:intergenic 40.0%
!! ATAAGCTTAAGGTTGGTGGT+TGG + chr4.1:7453594-7453613 MS.gene70143:intron 40.0%
!! CCACAATTTTGGGTGAAAGT+TGG - chr4.1:7453262-7453281 None:intergenic 40.0%
!! TAAGCTTAAGGTTGGTGGTT+GGG + chr4.1:7453595-7453614 MS.gene70143:intron 40.0%
!! TAGGGTTTTAACCATTCCAC+AGG - chr4.1:7454296-7454315 None:intergenic 40.0%
!! TTACCTTAGTTCTGCCAGTA+TGG + chr4.1:7453922-7453941 MS.gene70143:intron 40.0%
!!! AGGTTTTGACTTACCAGAGA+AGG + chr4.1:7452758-7452777 MS.gene70143:CDS 40.0%
AGCACTAGAGCAATACAAGG+GGG - chr4.1:7451780-7451799 None:intergenic 45.0%
AGTATCACTCAACCTAGTGC+AGG - chr4.1:7454429-7454448 None:intergenic 45.0%
AGTGCGCAAATCCAAGCTTA+TGG + chr4.1:7453891-7453910 MS.gene70143:intron 45.0%
ATAACTCTTCTACACTGCCC+AGG - chr4.1:7454996-7455015 None:intergenic 45.0%
ATAAGGGCAATATTCCCCAC+TGG - chr4.1:7455179-7455198 None:intergenic 45.0%
ATCAGTCATGCGTCTAAGAG+GGG - chr4.1:7451447-7451466 None:intergenic 45.0%
ATCTCCCTATGGCCAAAATG+TGG + chr4.1:7454196-7454215 MS.gene70143:intron 45.0%
CACCAATATTGGTGTGGGAA+TGG + chr4.1:7455052-7455071 MS.gene70143:CDS 45.0%
CAGCACTAGAGCAATACAAG+GGG - chr4.1:7451781-7451800 None:intergenic 45.0%
CAGCATATGACTCACAACGT+AGG + chr4.1:7455019-7455038 MS.gene70143:CDS 45.0%
CATCAGTCATGCGTCTAAGA+GGG - chr4.1:7451448-7451467 None:intergenic 45.0%
CATTCCCACACCAATATTGG+TGG - chr4.1:7455054-7455073 None:intergenic 45.0%
CCAATATTGGTGTGGGAATG+GGG + chr4.1:7455054-7455073 MS.gene70143:CDS 45.0%
CGAGTGGAACAGGGTTAAAA+AGG - chr4.1:7453227-7453246 None:intergenic 45.0%
CTAAAGCTCCCACAGGTAAA+AGG - chr4.1:7451071-7451090 None:intergenic 45.0%
GAAGTTACTAAAGCTCCCAC+AGG - chr4.1:7451078-7451097 None:intergenic 45.0%
GAGTGATTGCTTGGAAACCA+AGG - chr4.1:7451040-7451059 None:intergenic 45.0%
GATATTCTTCAGCGCACATG+GGG + chr4.1:7453678-7453697 MS.gene70143:CDS 45.0%
GCATAGCCTTCTTTGCTCTT+TGG - chr4.1:7451407-7451426 None:intergenic 45.0%
GCTGTTGAGTAGTCTTTGCA+TGG - chr4.1:7454089-7454108 None:intergenic 45.0%
GGCAATCTGTACCACTCAAA+AGG + chr4.1:7450912-7450931 MS.gene70143:CDS 45.0%
GGGCAGTGTAGAAGAGTTAT+TGG + chr4.1:7454996-7455015 MS.gene70143:CDS 45.0%
TAACTCTTCTACACTGCCCA+GGG - chr4.1:7454995-7455014 None:intergenic 45.0%
TACCAGCTCAATAGCCTCTT+CGG - chr4.1:7451905-7451924 None:intergenic 45.0%
TCAATAGCCTCTTCGGTGAA+TGG - chr4.1:7451898-7451917 None:intergenic 45.0%
TCCATACAAAGCAGAGATGG+AGG + chr4.1:7453732-7453751 MS.gene70143:CDS 45.0%
TCCTCCATCTCTGCTTTGTA+TGG - chr4.1:7453736-7453755 None:intergenic 45.0%
TCTAGTCAACATGCAGCACA+CGG + chr4.1:7452665-7452684 MS.gene70143:CDS 45.0%
TGTATGTTGGCATGCGTTAC+TGG + chr4.1:7451869-7451888 MS.gene70143:CDS 45.0%
TTAGAAGTCACCACTGGAGA+GGG + chr4.1:7455144-7455163 MS.gene70143:CDS 45.0%
TTCAAACCTTGAAGCTCGAC+AGG + chr4.1:7454662-7454681 MS.gene70143:CDS 45.0%
TTGTACCACCAATCTCCCTA+TGG + chr4.1:7454185-7454204 MS.gene70143:intron 45.0%
TTTAGAAGTCACCACTGGAG+AGG + chr4.1:7455143-7455162 MS.gene70143:CDS 45.0%
! AACAGGCACCTTTTACCTGT+GGG + chr4.1:7451060-7451079 MS.gene70143:CDS 45.0%
! AGAGCACCAAAGAGCAAAGA+AGG + chr4.1:7451398-7451417 MS.gene70143:CDS 45.0%
! CAAAAGGTGTATCGATGCTC+TGG + chr4.1:7450928-7450947 MS.gene70143:CDS 45.0%
! GTCCCAGCAAAAGTGTATGT+TGG + chr4.1:7451856-7451875 MS.gene70143:CDS 45.0%
! GTCTCTTGGAGAGCATATTC+CGG + chr4.1:7452542-7452561 MS.gene70143:CDS 45.0%
! TAACCTTGGAACGGACTCAT+GGG + chr4.1:7452337-7452356 MS.gene70143:intron 45.0%
! TGCACATCATCTAGAGTCTC+TGG - chr4.1:7451177-7451196 None:intergenic 45.0%
! TGGTTCAAGTTTGCGTCTCT+TGG + chr4.1:7452528-7452547 MS.gene70143:CDS 45.0%
! TTAACCTTGGAACGGACTCA+TGG + chr4.1:7452336-7452355 MS.gene70143:intron 45.0%
!! AGTTGCCACATTTTGGCCAT+AGG - chr4.1:7454204-7454223 None:intergenic 45.0%
!! CATTTTGGCCATAGGGAGAT+TGG - chr4.1:7454196-7454215 None:intergenic 45.0%
!! GCATCGATACACCTTTTGAG+TGG - chr4.1:7450926-7450945 None:intergenic 45.0%
!! GGACAAAGAGTGCTGAAACT+TGG + chr4.1:7455079-7455098 MS.gene70143:CDS 45.0%
!! GTTGCCACATTTTGGCCATA+GGG - chr4.1:7454203-7454222 None:intergenic 45.0%
!! TGCTCAAGCGAGAGTATTAC+TGG - chr4.1:7451228-7451247 None:intergenic 45.0%
!! TTGGCGTTTTAAATGCCGAG+TGG - chr4.1:7453243-7453262 None:intergenic 45.0%
!! TAAATAATAAATAAAAAACA+AGG - chr4.1:7454395-7454414 None:intergenic 5.0%
AACTCTTCTACACTGCCCAG+GGG - chr4.1:7454994-7455013 None:intergenic 50.0%
AAGGATAACCCTGAGCTCAC+CGG + chr4.1:7454816-7454835 MS.gene70143:intron 50.0%
ACAGAGTAGAGTTGGACCTG+TGG + chr4.1:7454277-7454296 MS.gene70143:intron 50.0%
AGCACACGGTAATACCTTCG+TGG + chr4.1:7452679-7452698 MS.gene70143:CDS 50.0%
ATTCCTCTCTGACCTGCACT+AGG + chr4.1:7454414-7454433 MS.gene70143:intron 50.0%
CACATCCAAGAGCAGGAACA+CGG - chr4.1:7454572-7454591 None:intergenic 50.0%
CCCCATTCCCACACCAATAT+TGG - chr4.1:7455057-7455076 None:intergenic 50.0%
CTCAGGGTTATCCTTATCCC+CGG - chr4.1:7454811-7454830 None:intergenic 50.0%
GAAGGCTATGCTTCCATTGG+TGG + chr4.1:7451416-7451435 MS.gene70143:CDS 50.0%
GAGACGCAAACTTGAACCAC+TGG - chr4.1:7452527-7452546 None:intergenic 50.0%
GCATCAGTCATGCGTCTAAG+AGG - chr4.1:7451449-7451468 None:intergenic 50.0%
GCCACCACCAATATTGGTGT+GGG + chr4.1:7455047-7455066 MS.gene70143:CDS 50.0%
GGAGTTGCCACCACCAATAT+TGG + chr4.1:7455041-7455060 MS.gene70143:CDS 50.0%
GTAGAGTTGGACCTGTGGAA+TGG + chr4.1:7454282-7454301 MS.gene70143:CDS 50.0%
GTGCCTGTTGAGTGATTGCT+TGG - chr4.1:7451049-7451068 None:intergenic 50.0%
TAACCCATGAGTCCGTTCCA+AGG - chr4.1:7452343-7452362 None:intergenic 50.0%
TAGAAGTCACCACTGGAGAG+GGG + chr4.1:7455145-7455164 MS.gene70143:CDS 50.0%
TAGACGCATGACTGATGCAC+AGG + chr4.1:7451451-7451470 MS.gene70143:CDS 50.0%
TATTGGTGTGGGAATGGGGA+TGG + chr4.1:7455058-7455077 MS.gene70143:CDS 50.0%
TCCAGTTGCGTATGTCGAAG+AGG + chr4.1:7453702-7453721 MS.gene70143:CDS 50.0%
TCCCACACCAATATTGGTGG+TGG - chr4.1:7455051-7455070 None:intergenic 50.0%
TCTCCCATATGTTGGTGCGA+TGG + chr4.1:7454635-7454654 MS.gene70143:CDS 50.0%
TGAGTGGTACAGATTGCCTG+TGG - chr4.1:7450910-7450929 None:intergenic 50.0%
TGCCACCACCAATATTGGTG+TGG + chr4.1:7455046-7455065 MS.gene70143:CDS 50.0%
TTTGGCCATAGGGAGATTGG+TGG - chr4.1:7454193-7454212 None:intergenic 50.0%
! AAGGTGTATCGATGCTCTGG+AGG + chr4.1:7450931-7450950 MS.gene70143:CDS 50.0%
! AGAGGGGTTTTTGCACCAGT+GGG + chr4.1:7455161-7455180 MS.gene70143:CDS 50.0%
! ATCCTTTTTCCGGTGAGCTC+AGG - chr4.1:7454828-7454847 None:intergenic 50.0%
! ATGGTCTGAAGCACAACCCT+TGG + chr4.1:7451020-7451039 MS.gene70143:CDS 50.0%
! ATTAGTCTCCGACTCTTGGC+CGG + chr4.1:7454789-7454808 MS.gene70143:intron 50.0%
! CAACAGGCACCTTTTACCTG+TGG + chr4.1:7451059-7451078 MS.gene70143:CDS 50.0%
! GAAGTTGAAGGGGCACGAAT+TGG - chr4.1:7450620-7450639 None:intergenic 50.0%
! GTTTGCTGGCCGTACCAATT+AGG + chr4.1:7454360-7454379 MS.gene70143:CDS 50.0%
! TCCTTTTTCCGGTGAGCTCA+GGG - chr4.1:7454827-7454846 None:intergenic 50.0%
! TGACAGTCTTTGGTTCCCCT+GGG + chr4.1:7454976-7454995 MS.gene70143:intron 50.0%
! TTGACAGTCTTTGGTTCCCC+TGG + chr4.1:7454975-7454994 MS.gene70143:intron 50.0%
!! AGCGATTAGTCTCCGACTCT+TGG + chr4.1:7454785-7454804 MS.gene70143:intron 50.0%
AAGAGGGGATCCACCACCAA+TGG - chr4.1:7451432-7451451 None:intergenic 55.0%
ACCCTGAGCTCACCGGAAAA+AGG + chr4.1:7454823-7454842 MS.gene70143:intron 55.0%
ACGGCCATCGCACCAACATA+TGG - chr4.1:7454642-7454661 None:intergenic 55.0%
AGCGTACCTGTCGAGCTTCA+AGG - chr4.1:7454671-7454690 None:intergenic 55.0%
AGTCGGAGACTAATCGCTCG+AGG - chr4.1:7454783-7454802 None:intergenic 55.0%
CAACCTAGTGCAGGTCAGAG+AGG - chr4.1:7454420-7454439 None:intergenic 55.0%
CACCGAAGAGGCTATTGAGC+TGG + chr4.1:7451900-7451919 MS.gene70143:CDS 55.0%
CCTTCACGTTGGTACCACGA+AGG - chr4.1:7452696-7452715 None:intergenic 55.0%
CCTTCGTGGTACCAACGTGA+AGG + chr4.1:7452693-7452712 MS.gene70143:CDS 55.0%
CGGCCATCGCACCAACATAT+GGG - chr4.1:7454641-7454660 None:intergenic 55.0%
CGTTACTAGAAGCCTCCGTG+TGG - chr4.1:7450957-7450976 None:intergenic 55.0%
CTAGAGTCTCTGGACCTCCA+AGG - chr4.1:7451167-7451186 None:intergenic 55.0%
CTGGCATCCATTCACCGAAG+AGG + chr4.1:7451888-7451907 MS.gene70143:CDS 55.0%
GCACAAGTGCGGCAAGAATG+AGG - chr4.1:7450662-7450681 None:intergenic 55.0%
GCCTCTTCGACATACGCAAC+TGG - chr4.1:7453706-7453725 None:intergenic 55.0%
GCGACACTTGAAGGCTTGTG+AGG - chr4.1:7453320-7453339 None:intergenic 55.0%
GGCTATGCTTCCATTGGTGG+TGG + chr4.1:7451419-7451438 MS.gene70143:CDS 55.0%
GGTTGTGCTTCAGACCATCC+TGG - chr4.1:7451018-7451037 None:intergenic 55.0%
GTGCAAAAACCCCTCTCCAG+TGG - chr4.1:7455157-7455176 None:intergenic 55.0%
GTGGGTTCACATCCAAGAGC+AGG - chr4.1:7454579-7454598 None:intergenic 55.0%
GTTGCGTATGTCGAAGAGGC+TGG + chr4.1:7453706-7453725 MS.gene70143:CDS 55.0%
TTAGTCTCCGACTCTTGGCC+GGG + chr4.1:7454790-7454809 MS.gene70143:intron 55.0%
! AGCAGAGATGGAGGAGTGTG+TGG + chr4.1:7453741-7453760 MS.gene70143:CDS 55.0%
! GAGAGGGGTTTTTGCACCAG+TGG + chr4.1:7455160-7455179 MS.gene70143:CDS 55.0%
! GAGGGGTTTTTGCACCAGTG+GGG + chr4.1:7455162-7455181 MS.gene70143:CDS 55.0%
ACTCAACAGCGTTCTCGCCG+AGG + chr4.1:7454099-7454118 MS.gene70143:intron 60.0%
CCTTATCCCCGGCCAAGAGT+CGG - chr4.1:7454800-7454819 None:intergenic 60.0%
TAGTCTCCGACTCTTGGCCG+GGG + chr4.1:7454791-7454810 MS.gene70143:intron 60.0%
!! TCGATGCTCTGGAGGCCACA+CGG + chr4.1:7450939-7450958 MS.gene70143:CDS 60.0%
CCGACTCTTGGCCGGGGATA+AGG + chr4.1:7454797-7454816 MS.gene70143:intron 65.0%
TGGGGCCGTGTTCCTGCTCT+TGG + chr4.1:7454564-7454583 MS.gene70143:CDS 65.0%
!! ATGCTCTGGAGGCCACACGG+AGG + chr4.1:7450942-7450961 MS.gene70143:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 7450608 7455206 7450608 ID=MS.gene70143
chr4.1 mRNA 7450608 7455206 7450608 ID=MS.gene70143.t1;Parent=MS.gene70143
chr4.1 exon 7450608 7450705 7450608 ID=MS.gene70143.t1.exon1;Parent=MS.gene70143.t1
chr4.1 CDS 7450608 7450705 7450608 ID=cds.MS.gene70143.t1;Parent=MS.gene70143.t1
chr4.1 exon 7450900 7451227 7450900 ID=MS.gene70143.t1.exon2;Parent=MS.gene70143.t1
chr4.1 CDS 7450900 7451227 7450900 ID=cds.MS.gene70143.t1;Parent=MS.gene70143.t1
chr4.1 exon 7451329 7451472 7451329 ID=MS.gene70143.t1.exon3;Parent=MS.gene70143.t1
chr4.1 CDS 7451329 7451472 7451329 ID=cds.MS.gene70143.t1;Parent=MS.gene70143.t1
chr4.1 exon 7451820 7451921 7451820 ID=MS.gene70143.t1.exon4;Parent=MS.gene70143.t1
chr4.1 CDS 7451820 7451921 7451820 ID=cds.MS.gene70143.t1;Parent=MS.gene70143.t1
chr4.1 exon 7452460 7452563 7452460 ID=MS.gene70143.t1.exon5;Parent=MS.gene70143.t1
chr4.1 CDS 7452460 7452563 7452460 ID=cds.MS.gene70143.t1;Parent=MS.gene70143.t1
chr4.1 exon 7452653 7452779 7452653 ID=MS.gene70143.t1.exon6;Parent=MS.gene70143.t1
chr4.1 CDS 7452653 7452779 7452653 ID=cds.MS.gene70143.t1;Parent=MS.gene70143.t1
chr4.1 exon 7453673 7453825 7453673 ID=MS.gene70143.t1.exon7;Parent=MS.gene70143.t1
chr4.1 CDS 7453673 7453825 7453673 ID=cds.MS.gene70143.t1;Parent=MS.gene70143.t1
chr4.1 exon 7454281 7454381 7454281 ID=MS.gene70143.t1.exon8;Parent=MS.gene70143.t1
chr4.1 CDS 7454281 7454381 7454281 ID=cds.MS.gene70143.t1;Parent=MS.gene70143.t1
chr4.1 exon 7454482 7454683 7454482 ID=MS.gene70143.t1.exon9;Parent=MS.gene70143.t1
chr4.1 CDS 7454482 7454683 7454482 ID=cds.MS.gene70143.t1;Parent=MS.gene70143.t1
chr4.1 exon 7454982 7455206 7454982 ID=MS.gene70143.t1.exon10;Parent=MS.gene70143.t1
chr4.1 CDS 7454982 7455206 7454982 ID=cds.MS.gene70143.t1;Parent=MS.gene70143.t1
Gene Sequence

>MS.gene70143

ATGAATTCTCCAATTCGTGCCCCTTCAACTTCTTCTTGCTCATATATTCGTCCTCATTCTTGCCGCACTTGTGCTTCTCGTAATTTCAAGCTTCCTATGTCAGTGTTCCTTTTTCAATTGTTATTGTGTTTTTAACATTTTTAGTAACCAAATATTTTACTAAGGTTATTTCTTGTTTGTAGTTTAGTTGATAGGATCTGTAGAATCATCATATTCCTCGTATGAAATTGTGTTTTTCTTGTATTTTGATTGCTTTGTATCATCATAATCCTAATATTCTTTATTTTTATAGGCTATTGCCACAGGCAATCTGTACCACTCAAAAGGTGTATCGATGCTCTGGAGGCCACACGGAGGCTTCTAGTAACGCTAATCCATTGAAAACTTGCATTGTTGGCAAATTTACTCCAGGATGGTCTGAAGCACAACCCTTGGTTTCCAAGCAATCACTCAACAGGCACCTTTTACCTGTGGGAGCTTTAGTAACTTCAACAACTCAAGATGTATCTGATACGCCTCTTATTGGTGATGATAAGATCGGAGTGTTATTGTTGAACCTTGGAGGTCCAGAGACTCTAGATGATGTGCAGCCTTTTTTGTTTAACCTTTTTGCCGATCCAGTAATACTCTCGCTTGAGCACACAATATTCATATGATATGATCAAATTGTTTTTTTTTTTTTATTATCACCGTTAGTTACATTTTCTGTATAATTATGCAGGATATCATACGATTGCCAAGGTTATTTAGTTTTCTTCAAAAGCCACTGGCTCAATTTGTATCTGTTTTAAGAGCACCAAAGAGCAAAGAAGGCTATGCTTCCATTGGTGGTGGATCCCCTCTTAGACGCATGACTGATGCACAGGCATGACACTTCCTGATAACTTTTTTCTGTACACTACCACACATTTGACTTTCGAATTGTTAGATAGGGCATTTGGAAACTTTTTCAATTTACCAGATACTGAATTTAGTTCGTAAAATGTTATCCTCTCATATAATTGCTGTTTTTCCAACCGTTTAAGCCATTTTTTTTAAATTCTCACTAGTCCATTGAGATTTTACAATGGACTTGCATTATAATTTTTCTATTGTGTTTGAAACTTTTTCTAATACTATGATGCGGTGACGTACACTACATTAAGTTCTTTCTTTTGTTATCTCTCTCTCCCCCTTGTATTGCTCTAGTGCTGATAATGATTCTCTATACAGGCTGAAGAGTTAAGAAAATCTCTATTTGAAAAGAATGTCCCAGCAAAAGTGTATGTTGGCATGCGTTACTGGCATCCATTCACCGAAGAGGCTATTGAGCTGGTATTGATCATCTTTATGTTTGATTACAATGTCAAATTGGATAGTAATAAATAAGATTGTGCCACTTTTAGTGATGTATTTTTACAAGTTTTAGGAGGATGACATCTGATGTTCTCTGTTAAGTTGTTTATAAATATAAGAAAATATGCATTTTTCATTGTTTTAAAAATTAGAAAAAGTAATTGGCCAAATATGTCAATTTATTTTATAGTATAGTTTTCAGCATATTTATGCAAACAACATTAAAGGAGTAAGAACTTTTTAAAAAAAAATGGTTTGCAATCGTAATAATAGTATTAGATTGGTCGAAATTATTGCCATTTTGAATGTGTAAATTTTGTATTTCTTGGGACAGTTAAGTTCTCTGTTATTTAGCAAATACGTGATTTAACCAATTATCTTCTTGAATAAACTTTAACCTTGGAACGGACTCATGGGTTAACTAATTTTTGTCAAAGTATTTTTACATGAATTTATCTGTCACATTTGTGATTTACTCAAGCCAATCATGACCAATTTTTCCTTTGAAATCATGTAGATTAAAAGGGATGGAATTACAAAGCTTGTTGTGCTTCCACTTTATCCACAATTTTCAATTTCGACCAGTGGTTCAAGTTTGCGTCTCTTGGAGAGCATATTCCGGTGATTACTATAAAATATTCTGTTATCACATCATCATACTCCAATTTATTATCTAACTTTCGGTTGTGAATTATTTATTGGTTCCTTAGAGAAGATGAGTATCTAGTCAACATGCAGCACACGGTAATACCTTCGTGGTACCAACGTGAAGGATACATAAAGGCAATGGCAAATTTAATTGAAAATGAGCTAAAAGGTTTTGACTTACCAGAGAAGGTACTACTTCATTTTTATATTTAAAAGACAAAAGCGTTGTTCCTAAACATTTGTATATTATCAATGTTATTCTTCTACTTTAAATATTGATAGCTTAATGTATATAGTCAGTATCAGATATTTCTGGTTAGGTTAATAGAATGATGACTGTATGAGTAACTTACTCTGTTTGATTAACTTAGGCAATTGGGAGATTGTGAAATGACTTTTTTTATAAAAATTAAAACAATCAACAACTTCGTTTATCTTTTATAGGTTTCGTTGTATTTTTGGTCCTGCTATTATGGTCATATCTGATTGAGCCCGCCAATAATTTTTTGCTGAAATTTAATCCCTTGATTTTTTCAATTGCTACAACCAACTCCTTTCATTAGCTTTTTTCCATCTGAAATATTCAAATCCACCATTTTCTATTCCTAATATTCGCAAATTAAACCAAATGTACCTTTTTAACCCTGTTCCACTCGGCATTTAAAACGCCAACTTTCACCCAAAATTGTGGGGAATCTTGAAAAGGTTTCCTCTTTGAAAATTTAACCTCACAAGCCTTCAAGTGTCGCTAAATTAGTATTGAGAATTTGTGCAATGCGGGGAGAATTTTTTGAAAAGAATCTATGTTTGGTGCGATTTACAATTTTGTGTTCAATTATTTAGCAGAAACAACGTTTGACAATAAATAACACTATCACATTAGGCATAGATTAATATTGTGTATCAAGTGTTAAGTATCACGTTCATAAAGCTAAGTATAACATCAATAATATTTGAGAAGGCAGTGTGAATCCATAAAGTTTTTCCGAAACTCGAGCTCCTTATAAGCTTAAGGTTGGTGGTTGGGTGTCACTTCGTTGTAAATATTTGTTGTTAGTCCTAGTGACTAATTTTTGTTGCAGGTCATGATATTCTTCAGCGCACATGGGGTTCCAGTTGCGTATGTCGAAGAGGCTGGTGATCCATACAAAGCAGAGATGGAGGAGTGTGTGGATTTAATCATGGAAGAGCTTGAGAAAAGAAAGATAACCAATGCATACACACTTGCTTATCAGGTACTTTTTTGTTAGAAATTTGGGACCCTCGGTTTCTAGAAGTATTAATGCATGTTGATTCATAAAGTGCGCAAATCCAAGCTTATGGTATAATGTTTACCTTAGTTCTGCCAGTATGGTATTCACCAAAGTAGCAATTGGTATTTCCCTATCAACAAGGCCATAATATTCTGAACAGTTTGTGTGATTCAGCTTATTACTTATTGCATAAAGAAAGCTCTTTGCAAAAAATAATACTCTCTGATATAGATCCCGAAGAACCATGCAAAGACTACTCAACAGCGTTCTCGCCGAGGACTACGTTTAGTCATCAAGTCAATAGGTGGTGAAGATGAGTTGTCTCTACAGTACAAAAAAAATTGTACCACCAATCTCCCTATGGCCAAAATGTGGCAACTGCTTTTAGATACAGCCTTTTTCCAAATTTCTAACAATGCATTATAATGCTTATACAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTATACAGATGAGACAATAATTGAACTTGGGAAAAAGGGAGTAAAAAGTTTGCTGGCCGTACCAATTAGGTAACATCAGCCTTGTTTTTTATTTATTATTTATTCCTCTCTGACCTGCACTAGGTTGAGTGATACTAATATTTGGTTTAACCTCTTTATGCACTCACAGCTTTGTCAGTGAACATATTGAAACACTAGAAGAAATTGATGTTGAGTACAAAGAATTGGCTTTAGAATCTGGAATAGAAAATTGGGGCCGTGTTCCTGCTCTTGGATGTGAACCCACTTTCATTTCAGACTTGGCAGATGCTGTAATTGAGAGTCTCCCATATGTTGGTGCGATGGCCGTTTCAAACCTTGAAGCTCGACAGGTACGCTAATCAACTCTCATTTATATTTTTGTATTGTGGAAGGAAAATATTTTATTCAAACATTATCTGCCACGTTGTCAAATGTCATTGTCAATACCTCGAGCGATTAGTCTCCGACTCTTGGCCGGGGATAAGGATAACCCTGAGCTCACCGGAAAAAGGATACACACATGTAGACATCTTCCATATCAGCATATTTTTTTAGATAAATCAAGTCATATAGATTCACATAGTAGTGTATTTTCTAATTGCATGCTTTCATTGTGTGATCTAACAAAAAGTTTTGGTTTGTTGACAGTCTTTGGTTCCCCTGGGCAGTGTAGAAGAGTTATTGGCAGCATATGACTCACAACGTAGGGAGTTGCCACCACCAATATTGGTGTGGGAATGGGGATGGACAAAGAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGATTGCTGTGTTGCTTCTGTTGTTTTTAGAAGTCACCACTGGAGAGGGGTTTTTGCACCAGTGGGGAATATTGCCCTTATTTAGGTGA

Protein sequence

>MS.gene70143.t1

MNSPIRAPSTSSCSYIRPHSCRTCASRNFKLPMLLPQAICTTQKVYRCSGGHTEASSNANPLKTCIVGKFTPGWSEAQPLVSKQSLNRHLLPVGALVTSTTQDVSDTPLIGDDKIGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPRLFSFLQKPLAQFVSVLRAPKSKEGYASIGGGSPLRRMTDAQAEELRKSLFEKNVPAKVYVGMRYWHPFTEEAIELIKRDGITKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYIKAMANLIENELKGFDLPEKVMIFFSAHGVPVAYVEEAGDPYKAEMEECVDLIMEELEKRKITNAYTLAYQSRVGPVEWLKPYTDETIIELGKKGVKSLLAVPISFVSEHIETLEEIDVEYKELALESGIENWGRVPALGCEPTFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAAYDSQRRELPPPILVWEWGWTKSAETWNGRAAMIAVLLLLFLEVTTGEGFLHQWGILPLFR