AlfalfaGEDB | MS.gene44439

M. sativa cultivar XinJiangDaYe / MS.gene44439

KEGG: -
GO: GO:0008150 GO:0008152 GO:0055114
PFAM: PF13911.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44439.t1	XP_003608562.1	96.4	250	9	0	1	250	1	250	1.10E-137	499.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44439.t1	Q58CY6	31.1	167	102	6	78	241	20	176	4.6e-07	56.6

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44439.t1	G7JF90	96.4	250	9	0	1	250	1	250	8.0e-138	499.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene44439	0.835247	1.88E-56	-1.69E-46
MS.gene049171	MS.gene44439	0.923783	1.68E-89	-1.69E-46
MS.gene049217	MS.gene44439	0.829715	4.41E-55	-1.69E-46
MS.gene049222	MS.gene44439	0.883636	3.79E-71	-1.69E-46
MS.gene049232	MS.gene44439	0.80605	9.93E-50	-1.69E-46
MS.gene049251	MS.gene44439	-0.80529	1.43E-49	-1.69E-46
MS.gene049257	MS.gene44439	0.86351	2.36E-64	-1.69E-46
MS.gene049285	MS.gene44439	0.871362	7.24E-67	-1.69E-46
MS.gene049320	MS.gene44439	0.843743	1.16E-58	-1.69E-46
MS.gene049373	MS.gene44439	0.824981	6.01E-54	-1.69E-46

Showing 1 to 10 of 240 entries

Previous1 2 3 4 5…24Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44439.t1	MTR_4g097500	96.400	250	9	0	1	250	1	250	0.0	507
MS.gene44439.t1	MTR_7g100540	29.020	255	163	9	2	246	4	250	2.43e-22	92.8

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene44439.t1	AT5G65840	71.359	206	56	1	49	251	70	275	9.26e-109	315
MS.gene44439.t1	AT2G37240	30.653	199	130	6	51	246	54	247	5.72e-25	99.8

Showing 1 to 2 of 2 entries

Previous1Next

Find 57 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCACTTCTATCATC+TGG	0.525139	8.1:+25048886	None:intergenic
AAATCAAGGTTTGATGCAGC+TGG	0.524810	8.1:-25051287	MS.gene44439:CDS
AAGAATACGAGCTTTATTGG+GGG	0.731789	8.1:+25051235	None:intergenic
AAGATCATTAGTTACCAGCA+TGG	0.626138	8.1:+25051423	None:intergenic
AAGCTAATTGCAGTGGGCGT+TGG	0.548964	8.1:-25051260	MS.gene44439:CDS
AAGGTAAAGCTTACACTGGC+TGG	0.424360	8.1:+25049099	None:intergenic
ACCACTTCTATCATCTGGAG+TGG	0.632768	8.1:+25048891	None:intergenic
ACCTTCAAATCTTCATTCAT+CGG	0.522192	8.1:-25052276	MS.gene44439:CDS
AGAAAGAAGTCGTTTGTTTC+GGG	0.362238	8.1:+25052251	None:intergenic
AGATCATTAGTTACCAGCAT+GGG	0.566257	8.1:+25051424	None:intergenic

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGTATGCCTGAAAGA+AGG	+	chr8.1:25051883-25051902	None:intergenic	30.0%
AACATCAAAAACATCGTCTA+AGG	+	chr8.1:25052363-25052382	None:intergenic	30.0%
ACATCAAAAACATCGTCTAA+GGG	+	chr8.1:25052362-25052381	None:intergenic	30.0%
ACCTTCAAATCTTCATTCAT+CGG	-	chr8.1:25048765-25048784	MS.gene44439:intron	30.0%
ATTTGATGCTTTGCAAAAAG+CGG	-	chr8.1:25052106-25052125	MS.gene44439:intron	30.0%
CATTGAAAGAATCCAAATCA+AGG	-	chr8.1:25049740-25049759	MS.gene44439:intron	30.0%
GAAATCCATTTCAATGACTT+TGG	-	chr8.1:25050549-25050568	MS.gene44439:intron	30.0%
TAAAGACAATCCATTGGAAA+TGG	+	chr8.1:25051767-25051786	None:intergenic	30.0%
TCAACACAACATTAACAAAC+AGG	+	chr8.1:25049065-25049084	None:intergenic	30.0%
TGAGTGAGACCAAAAAATAA+AGG	-	chr8.1:25050804-25050823	MS.gene44439:intron	30.0%

Showing 1 to 10 of 263 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	25048657	25052406	25048657	ID=MS.gene44439
chr8.1	mRNA	25048657	25052406	25048657	ID=MS.gene44439.t1;Parent=MS.gene44439
chr8.1	exon	25052134	25052406	25052134	ID=MS.gene44439.t1.exon1;Parent=MS.gene44439.t1
chr8.1	CDS	25052134	25052406	25052134	ID=cds.MS.gene44439.t1;Parent=MS.gene44439.t1
chr8.1	exon	25051438	25051484	25051438	ID=MS.gene44439.t1.exon2;Parent=MS.gene44439.t1
chr8.1	CDS	25051438	25051484	25051438	ID=cds.MS.gene44439.t1;Parent=MS.gene44439.t1
chr8.1	exon	25051226	25051340	25051226	ID=MS.gene44439.t1.exon3;Parent=MS.gene44439.t1
chr8.1	CDS	25051226	25051340	25051226	ID=cds.MS.gene44439.t1;Parent=MS.gene44439.t1
chr8.1	exon	25049258	25049302	25049258	ID=MS.gene44439.t1.exon4;Parent=MS.gene44439.t1
chr8.1	CDS	25049258	25049302	25049258	ID=cds.MS.gene44439.t1;Parent=MS.gene44439.t1
chr8.1	exon	25049113	25049172	25049113	ID=MS.gene44439.t1.exon5;Parent=MS.gene44439.t1
chr8.1	CDS	25049113	25049172	25049113	ID=cds.MS.gene44439.t1;Parent=MS.gene44439.t1
chr8.1	exon	25048879	25048974	25048879	ID=MS.gene44439.t1.exon6;Parent=MS.gene44439.t1
chr8.1	CDS	25048879	25048974	25048879	ID=cds.MS.gene44439.t1;Parent=MS.gene44439.t1
chr8.1	exon	25048657	25048776	25048657	ID=MS.gene44439.t1.exon7;Parent=MS.gene44439.t1
chr8.1	CDS	25048657	25048776	25048657	ID=cds.MS.gene44439.t1;Parent=MS.gene44439.t1

Gene Sequence

>MS.gene44439

ATGGCAACAACTCTACAATCTCTTCGATTTCCTTTTCATCCATCTATCACACCCCCGAATTCACACACTTACCCCTCCTCTACCATTCACTACACCCCAAAATCTAATACCTTCAAATCTTCATTCATCGGCACCCGAAACAAACGACTTCTTTCTGCTAGAGCTTCGAGTTCACAGTATAGTCCCACTGTTGCAGAGAATCTAGGCGATGTTAGTATTTTCACTGCTGCTGGGGAATCTGTCATGTTCAAAGATCTTTGGGATCAGGAACAGGTCAGAATGGTTATGTTCGTATAAAAAAGTTTTGATTTTTACTCTTTAAATGTTTTGGGCACATCACAATTTTTTTTTTTTTTGACCTAAATTGTGGTTTTTGCTTTATGGAATACTAGATTAATCACCCCTCCTGTTTGTTAATGTTGTGTTGAAGTAGTATGAGTTAATTAGTTGAAATTGATTTGAGGTTGATATATTAGTTGGAATTAATTCATTTTGGTCGTAAGTAAAGTCTGACTTAGAATTAGTTGAATTGAAATTAATTTATTCTGGTGTTAACCTAGTGTTTGGCCTGTAGGTAAGTAAAGTATGACTTAGAATTAGTTTAAATTAATTTGAAGTTGTATCAGATCAAGGCCTTACTTGGATAAATAATAAATTACTTATTTGCAGCTTATCACGATATGTGCGTATATATAAGCTATAAGCTATAGCAAAAGATAAAATAAAGTTAAATTGGAGAACTTGTGAAAATAAGTTGAAACCAGCTTATGGACAATGTCTGTTTTCATAAGTTATCCCAAATAGCCTCACAAAACTTATGTCAGTAGATAAACTCAAATTAGCCAATCAAAATAGATACTAACTAGTTGAATTAATAGGTTGATGTTAATATGTGGTTGGTGATTAGAGTTAATTCTTACAGGGAATAGCTGTGGTGGCACTTTTAAGGCACTTTGGATGCCCATGCTGGTAACTAATGATCTTTGCCTTTGTGCTTTTGGTTATTAATCGGGATTTGTTTGACTGATAGTTGTTCTTACTGTGGATTGTCTTCTGTTCTTCTTAGTTGGGAACTGGCTTCAACATTGAAAGAATCCAAATCAAGGTTTGATGCAGCTGGTGTCAAGCTAATTGCAGTGGGCGTTGGTGCCCCCAATAAAGCTCGTATTCTTGCTGAACGAGTAATGTTTCCTTGTCCTCCTTTGTCATTTCAGTGTTTGACTGTTTCCCTAGGGAATTATGAGGCTTTAAAAGAGTAACTTCATTTAACAAGTCTGTCTTTGAGTATTTTAGGGTTTTTTACCTCTTTAGAGTAGTTTCGGACGGAAATTACCAATCTAGTATCATCAAATTAAGTTCAACGTAGCATTCGACACATATCTAACAAACATCACATAATAGTGAACCTTCACCGCTGTAGCATAAAAGTATATTCTCATGAAAGATTTGATACATTGAGAAATATTATTGTAAGAAAAGACATGGAGAGAATCTAGATGAACATTTGACTCACGAGCCTTGGCAAGAGCTTTTGCAAGAAATCCACAGCTGATGAGCCAAAGTTGTTAAAAGGCTCTTCAGCAAGATAATTGAATGTAACCACACTGCATTTTAAAATATATTAATAGAAAAAGACTGAATTGGCAATATCAAGCAATACAATGCACATACCAGACACTTGTGTAATCATAACAAATTTCACACTGATTCTCTTTGATATATTTGTTCTTTTGGTTCATAGATCTTTACAGTATCTTCGGTATAACCTTAATAAAGAAAAGTAGAAAACAATTACATGAGTATGTGTAATAGTTCTATGTTGTGTCAGTGATATCAATGTTGTGCCAAACTGCCAATATACAAATTAAGCACACAGGGAAGGAATAAAGGATGAAATCCATTTCAATGACTTTGGGTAAATAACACTTCTGCATAAACAAAATATAAGTATGCCAATAGTGGTTCAAAGGATAAGAAATAGACCTACCATGACAGTGATTTGAAAATATTTGTGAAAGATGGAATGATTCTGACTTAGGTTCAACTTGTCAGCTTCAGCAGCCTGTAACCATCATCAGGCTCTTTAGTGTTATAGAAAACTTTATAAATTTAAGAAAATATTAATAGATCTATCTCATGATAAAACTTGAGTGAGACCAAAAAATAAAGGAATGAAAAGTGGAAGACCTTATTGTTACTAGTATAGTTTGTGATGGATCTGCTAAGTGTTCAACCAAGTGAGGTATCGTGGGTTCAGGAAGTGGGGATGTAGGTTGGACAGGGAAAGACTGTGGAAAATTGTATTCACAAGACTGCTGGAAGGATTCATTGCGGGTGAGATCAGTGTGCCATCGATGAACAGATCCTCACTGGCAAAGAAAGAAGAATGTGGCTGGTATTTATGAAGTTTCAGCGTGATCCTCATCAGCAAGGGAGATGACATGGGAATGATTTCAAAAGAAAAAAAAATCAATTTTGAAATGTATACCTTATGAAAAATATGCACAAATGACAGATCCATATGGTGGGTGGAGTGTGTCGAGGAAGGGTTTGCCTTTGTGAGGGAGGTGGCCAAAAGGAAGTTTCTGTGAGTTGAAGAGATGCAGGGTAGGTTTTACCAATTTGGAACAATCAGTGGCTTGACACCTGTTTGTTTTTGCCATTCATGAGTTTTAATTATAGATTTCAGAATAGAATTAGAAAAAAGATAGAGTTAGAGATACATTTATACCATGTACGACTTACCTCTTTTTGGTGAAGGTAGGAATCCATGGCCAATAATTTTAAGTTTTTTAGATCAATTGTTATGTTTTTGTTTCAAGTTATCTTGGGTTACTAGGCTCAAGGATATTCTGCCTCAACGGTTTGTGGTTTAATTTTAAATTCACTTCATTGAAGGGTCACTATCTGTGTTGCAAATTTGCCAAGGATAGCAGTATGCCAGTATGGATGATCATTTTAATGGATATGGTTCTCTATACTTTAGCATATCTGAATTTTGAAGAATATTCATCTAATTTACGCAATTATTATATGGTATGAACATGTACTTGACGTCAAGACTCAACTGATATTTTCTTTTTCTACTGGTATTGTATGTTCAGTTACCATTTCCAATGGATTGTCTTTATGCAGACCCTGACCGTAAGGTAATGCACGGATATCATGTTGAACATTTACCTACTAGAACTCATTTTGTAAATGTCTATTTTAACCAATTTCGCCTTCTTTCAGGCATACAATTTTTTTGACCTCTACTATGGATTTGGCCGAACCTTTTTCAACCCAGCCAGTGTAAGCTTTACCTTGCACTTTTCTGAAATACAAATATGTGCGCGCGCACACGCATACATACATATATATACATTGTTAGACAATTTCCATTTTGCATGCTGGTAAAAATGTGGTTTGACTTCAAAATGATATTAACAGGCAAAGGTGTTATCGAGATTTGATGCTTTGCAAAAAGCGGTCAAGAACTATACAATAGAAGCCACTCCAGATGATAGAAGTGGTGTTTTGCAGCAGGTTTGATACATTAATCTGGTGGCAAAAGAATGAAAACAAACTTAATATTTTACTTTACAACTTGGGTTTCCTAAATTGATAAAATTCTTTACATTTTGTCAGGGAGGGATGTTTGTGTTTAGAGGGAAAGAGCTATTATATGCAAGGAAAGACGAAGGCACAGGTGATCATGCCCCCTTAGACGATGTTTTTGATGTTTGCTGCAAAGTGCCTGTTGCTTAA

Protein sequence

>MS.gene44439.t1

MATTLQSLRFPFHPSITPPNSHTYPSSTIHYTPKSNTFKSSFIGTRNKRLLSARASSSQYSPTVAENLGDVSIFTAAGESVMFKDLWDQEQGIAVVALLRHFGCPCCWELASTLKESKSRFDAAGVKLIAVGVGAPNKARILAERLPFPMDCLYADPDRKAYNFFDLYYGFGRTFFNPASAKVLSRFDALQKAVKNYTIEATPDDRSGVLQQGGMFVFRGKELLYARKDEGTGDHAPLDDVFDVCCKVPVA