Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50576.t1 | XP_013468582.1 | 97.9 | 609 | 9 | 1 | 1 | 605 | 1 | 609 | 6.30E-296 | 1026.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50576.t1 | Q8W104 | 54.3 | 606 | 227 | 8 | 18 | 603 | 17 | 592 | 9.6e-168 | 591.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50576.t1 | A0A072VKR1 | 97.9 | 609 | 9 | 1 | 1 | 605 | 1 | 609 | 4.6e-296 | 1026.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049250 | MS.gene50576 | 0.800602 | 1.33E-48 | -1.69E-46 |
| MS.gene049251 | MS.gene50576 | 0.845025 | 5.25E-59 | -1.69E-46 |
| MS.gene049298 | MS.gene50576 | 0.820526 | 6.55E-53 | -1.69E-46 |
| MS.gene049596 | MS.gene50576 | 0.802378 | 5.77E-49 | -1.69E-46 |
| MS.gene049844 | MS.gene50576 | 0.801821 | 7.52E-49 | -1.69E-46 |
| MS.gene050874 | MS.gene50576 | 0.829451 | 5.11E-55 | -1.69E-46 |
| MS.gene050875 | MS.gene50576 | 0.866645 | 2.45E-65 | -1.69E-46 |
| MS.gene051025 | MS.gene50576 | 0.806471 | 8.09E-50 | -1.69E-46 |
| MS.gene05124 | MS.gene50576 | 0.822825 | 1.93E-53 | -1.69E-46 |
| MS.gene051439 | MS.gene50576 | 0.803735 | 3.03E-49 | -1.69E-46 |
| MS.gene051914 | MS.gene50576 | 0.898604 | 4.51E-77 | -1.69E-46 |
| MS.gene052143 | MS.gene50576 | 0.823711 | 1.20E-53 | -1.69E-46 |
| MS.gene052169 | MS.gene50576 | 0.821654 | 3.60E-53 | -1.69E-46 |
| MS.gene052209 | MS.gene50576 | 0.80225 | 6.13E-49 | -1.69E-46 |
| MS.gene052308 | MS.gene50576 | 0.865515 | 5.58E-65 | -1.69E-46 |
| MS.gene052367 | MS.gene50576 | 0.831925 | 1.27E-55 | -1.69E-46 |
| MS.gene053108 | MS.gene50576 | 0.818444 | 1.95E-52 | -1.69E-46 |
| MS.gene053173 | MS.gene50576 | 0.888909 | 3.89E-73 | -1.69E-46 |
| MS.gene053348 | MS.gene50576 | 0.830632 | 2.63E-55 | -1.69E-46 |
| MS.gene054018 | MS.gene50576 | 0.852538 | 4.32E-61 | -1.69E-46 |
| MS.gene054459 | MS.gene50576 | 0.834539 | 2.83E-56 | -1.69E-46 |
| MS.gene054551 | MS.gene50576 | 0.880668 | 4.54E-70 | -1.69E-46 |
| MS.gene054593 | MS.gene50576 | 0.868952 | 4.45E-66 | -1.69E-46 |
| MS.gene054633 | MS.gene50576 | 0.890613 | 8.41E-74 | -1.69E-46 |
| MS.gene054662 | MS.gene50576 | 0.897128 | 1.90E-76 | -1.69E-46 |
| MS.gene054851 | MS.gene50576 | 0.809959 | 1.46E-50 | -1.69E-46 |
| MS.gene054941 | MS.gene50576 | 0.82848 | 8.78E-55 | -1.69E-46 |
| MS.gene055308 | MS.gene50576 | 0.847689 | 9.87E-60 | -1.69E-46 |
| MS.gene055578 | MS.gene50576 | 0.841723 | 4.00E-58 | -1.69E-46 |
| MS.gene055616 | MS.gene50576 | 0.833658 | 4.70E-56 | -1.69E-46 |
| MS.gene055617 | MS.gene50576 | 0.806258 | 8.98E-50 | -1.69E-46 |
| MS.gene056041 | MS.gene50576 | 0.833612 | 4.82E-56 | -1.69E-46 |
| MS.gene05640 | MS.gene50576 | 0.893502 | 5.92E-75 | -1.69E-46 |
| MS.gene056526 | MS.gene50576 | 0.812567 | 3.97E-51 | -1.69E-46 |
| MS.gene056528 | MS.gene50576 | 0.819171 | 1.34E-52 | -1.69E-46 |
| MS.gene05652 | MS.gene50576 | 0.876164 | 1.74E-68 | -1.69E-46 |
| MS.gene056618 | MS.gene50576 | 0.811099 | 8.29E-51 | -1.69E-46 |
| MS.gene057101 | MS.gene50576 | 0.820787 | 5.70E-53 | -1.69E-46 |
| MS.gene05732 | MS.gene50576 | 0.838695 | 2.47E-57 | -1.69E-46 |
| MS.gene057367 | MS.gene50576 | 0.888726 | 4.57E-73 | -1.69E-46 |
| MS.gene057458 | MS.gene50576 | 0.83343 | 5.36E-56 | -1.69E-46 |
| MS.gene057669 | MS.gene50576 | 0.840689 | 7.47E-58 | -1.69E-46 |
| MS.gene058128 | MS.gene50576 | 0.869607 | 2.73E-66 | -1.69E-46 |
| MS.gene058853 | MS.gene50576 | 0.872851 | 2.31E-67 | -1.69E-46 |
| MS.gene05926 | MS.gene50576 | 0.83521 | 1.92E-56 | -1.69E-46 |
| MS.gene059304 | MS.gene50576 | 0.811954 | 5.41E-51 | -1.69E-46 |
| MS.gene059553 | MS.gene50576 | 0.83475 | 2.50E-56 | -1.69E-46 |
| MS.gene05960 | MS.gene50576 | 0.825898 | 3.65E-54 | -1.69E-46 |
| MS.gene059616 | MS.gene50576 | 0.842978 | 1.86E-58 | -1.69E-46 |
| MS.gene060275 | MS.gene50576 | 0.834375 | 3.11E-56 | -1.69E-46 |
| MS.gene060291 | MS.gene50576 | 0.856636 | 2.81E-62 | -1.69E-46 |
| MS.gene060473 | MS.gene50576 | 0.81051 | 1.11E-50 | -1.69E-46 |
| MS.gene06080 | MS.gene50576 | 0.838272 | 3.17E-57 | -1.69E-46 |
| MS.gene06093 | MS.gene50576 | 0.915755 | 4.04E-85 | -1.69E-46 |
| MS.gene061044 | MS.gene50576 | 0.806145 | 9.48E-50 | -1.69E-46 |
| MS.gene061099 | MS.gene50576 | 0.809415 | 1.91E-50 | -1.69E-46 |
| MS.gene061260 | MS.gene50576 | 0.843924 | 1.04E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50576.t1 | MTR_1g070515 | 97.701 | 609 | 10 | 1 | 1 | 605 | 1 | 609 | 0.0 | 1202 |
| MS.gene50576.t1 | MTR_1g070515 | 96.970 | 561 | 13 | 1 | 1 | 557 | 1 | 561 | 0.0 | 1093 |
| MS.gene50576.t1 | MTR_2g066740 | 80.870 | 115 | 20 | 2 | 117 | 230 | 34 | 147 | 8.94e-54 | 183 |
| MS.gene50576.t1 | MTR_0878s0020 | 89.535 | 86 | 9 | 0 | 130 | 215 | 1 | 86 | 7.97e-46 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50576.t1 | AT3G54650 | 58.725 | 596 | 196 | 9 | 28 | 603 | 27 | 592 | 0.0 | 639 |
Find 150 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATGCTTTCTCTTGTTCT+TGG | 0.137595 | 1.2:+54158312 | MS.gene50576:CDS |
| ATTGCCACTTCTTGAACTTA+TGG | 0.229544 | 1.2:+54158828 | MS.gene50576:CDS |
| AGATTACTTGAGGTCACATT+AGG | 0.296935 | 1.2:-54158696 | None:intergenic |
| ATGCCCTAATCTGGAATCTA+TGG | 0.302684 | 1.2:+54156716 | MS.gene50576:CDS |
| TCTTGTAGAAATCTGCATTC+AGG | 0.308829 | 1.2:+54159157 | MS.gene50576:CDS |
| ATAAGGAACCCGAACCCTTT+TGG | 0.310964 | 1.2:-54159665 | None:intergenic |
| TATGCTTGATGATTAGCTTT+TGG | 0.316735 | 1.2:-54158954 | None:intergenic |
| ACCTCGCCACTAAGTAAATA+AGG | 0.317400 | 1.2:-54159682 | None:intergenic |
| GGAGTTGAAGCTTAGGGTTC+CGG | 0.327873 | 1.2:+54156195 | MS.gene50576:CDS |
| CGGCGAGCGCTTTCGTTTGA+CGG | 0.335154 | 1.2:+54155908 | MS.gene50576:CDS |
| ACCGCCGGCGGGATTGTTAT+CGG | 0.335562 | 1.2:+54156114 | MS.gene50576:CDS |
| GTGGTGGTTGTGGTGGAAAC+TGG | 0.336712 | 1.2:-54155803 | None:intergenic |
| ATGGAAGGTTGTTCTAATCT+AGG | 0.345750 | 1.2:+54157363 | MS.gene50576:CDS |
| TTCTGTACCGTCTGCGGTCT+CGG | 0.351169 | 1.2:+54155859 | MS.gene50576:CDS |
| CTGACTTTGTTACCTGACTT+TGG | 0.352864 | 1.2:-54159365 | None:intergenic |
| CGGGTTCCTTATTTACTTAG+TGG | 0.355932 | 1.2:+54159676 | MS.gene50576:CDS |
| TTGGAAAATGTTCATGCAAC+AGG | 0.363021 | 1.2:+54159315 | MS.gene50576:CDS |
| CATAACTATGATTGAAGGAT+TGG | 0.367458 | 1.2:+54157640 | MS.gene50576:CDS |
| CTCTGGGCAGTTTAAGTATA+GGG | 0.378634 | 1.2:-54159113 | None:intergenic |
| CGGCGTGGTGGTGGTGGTTG+TGG | 0.382786 | 1.2:-54155813 | None:intergenic |
| TCTCCATAGATTCCAGATTA+GGG | 0.385939 | 1.2:-54156719 | None:intergenic |
| ACAAACTGAGTTTCTTTAAA+CGG | 0.387577 | 1.2:-54158978 | None:intergenic |
| AGGTCAAGCAACTCTAGATT+TGG | 0.388297 | 1.2:-54158381 | None:intergenic |
| TGTTCATGCAACAGGTTGTC+AGG | 0.400235 | 1.2:+54159323 | MS.gene50576:CDS |
| CGACGGAGGAGTTGAAGCTT+AGG | 0.401872 | 1.2:+54156188 | MS.gene50576:CDS |
| CTGATGGCTCCAAAAGGGTT+CGG | 0.402880 | 1.2:+54159656 | MS.gene50576:CDS |
| CTCTTAGTGCTGCTCAATTG+AGG | 0.407117 | 1.2:+54157732 | MS.gene50576:CDS |
| AGATTCAGATCATTCAGCTC+TGG | 0.409333 | 1.2:-54159130 | None:intergenic |
| GCGGTTGGATCTGGGAAATT+AGG | 0.409772 | 1.2:-54158874 | None:intergenic |
| CTCAGTTTGTGGGGTTGCAC+CGG | 0.411998 | 1.2:+54158991 | MS.gene50576:CDS |
| GCTCTGGGCAGTTTAAGTAT+AGG | 0.415214 | 1.2:-54159114 | None:intergenic |
| AGATGGAGATGGAGATTTGT+TGG | 0.417613 | 1.2:+54156000 | MS.gene50576:CDS |
| AGATGGAGATTTGTTGGATC+TGG | 0.419722 | 1.2:+54156006 | MS.gene50576:CDS |
| GATTACTTGAGGTCACATTA+GGG | 0.425752 | 1.2:-54158695 | None:intergenic |
| AAAGCCGCATTGAAGCTATA+TGG | 0.425901 | 1.2:-54157691 | None:intergenic |
| TGATGGCTCCAAAAGGGTTC+GGG | 0.430597 | 1.2:+54159657 | MS.gene50576:CDS |
| TTTGAGGCTTTCGCTTAGAA+TGG | 0.430849 | 1.2:+54156270 | MS.gene50576:CDS |
| AGGCTTGACGATAAAGCGTT+TGG | 0.431841 | 1.2:+54155965 | MS.gene50576:CDS |
| ATCTCCATAGATTCCAGATT+AGG | 0.431846 | 1.2:-54156720 | None:intergenic |
| ACCGCAACCAATCGGATCAA+TGG | 0.439840 | 1.2:+54156756 | MS.gene50576:CDS |
| CCATCAGGTAGACGTTTAGA+AGG | 0.443237 | 1.2:-54159640 | None:intergenic |
| ATCGGCGGCGAAGGTGTGTA+AGG | 0.445828 | 1.2:+54156132 | MS.gene50576:CDS |
| GGCATAAGTGACAGTGGCAT+TGG | 0.453603 | 1.2:+54158618 | MS.gene50576:CDS |
| CCCATTGATCCGATTGGTTG+CGG | 0.458118 | 1.2:-54156757 | None:intergenic |
| ATTGATTCGAGCGGTTTGCC+TGG | 0.459369 | 1.2:+54156061 | MS.gene50576:CDS |
| CATCTAGTTTGTCTACACTT+TGG | 0.463348 | 1.2:+54157403 | MS.gene50576:CDS |
| GTCAACCACCGTCGAATCTC+CGG | 0.463535 | 1.2:+54155888 | MS.gene50576:CDS |
| GTTGCTTCAGTGCCCCACTT+TGG | 0.468923 | 1.2:+54159296 | MS.gene50576:CDS |
| TTTAAAGAAACTCAGTTTGT+GGG | 0.470137 | 1.2:+54158981 | MS.gene50576:CDS |
| TGGAAGGTTGTTCTAATCTA+GGG | 0.472778 | 1.2:+54157364 | MS.gene50576:CDS |
| GACCTCATAACTATGATTGA+AGG | 0.473186 | 1.2:+54157635 | MS.gene50576:CDS |
| ATAACTATGATTGAAGGATT+GGG | 0.473642 | 1.2:+54157641 | MS.gene50576:CDS |
| GTCTACCTGATGGCTCCAAA+AGG | 0.478330 | 1.2:+54159650 | MS.gene50576:CDS |
| CCGCAACCAATCGGATCAAT+GGG | 0.483382 | 1.2:+54156757 | MS.gene50576:CDS |
| GATTCAGATCATTCAGCTCT+GGG | 0.484073 | 1.2:-54159129 | None:intergenic |
| TCAATCTCCACATCTAGATC+TGG | 0.486325 | 1.2:-54156043 | None:intergenic |
| GAAGCTTAGGGTTCCGGTGA+AGG | 0.494599 | 1.2:+54156201 | MS.gene50576:CDS |
| TTTCGTCAGCGGTTGGATCT+GGG | 0.495746 | 1.2:-54158882 | None:intergenic |
| TTTGTGGGGTTGCACCGGCT+TGG | 0.495778 | 1.2:+54158996 | MS.gene50576:CDS |
| CGTGGTGGTGGTGGTTGTGG+TGG | 0.497371 | 1.2:-54155810 | None:intergenic |
| CGAAGGTGTGTAAGGGATGG+AGG | 0.497940 | 1.2:+54156140 | MS.gene50576:CDS |
| GGCGAATGGTTATCTATAGC+AGG | 0.505677 | 1.2:-54159619 | None:intergenic |
| GCCTGGGAATTTACGATGGG+AGG | 0.506430 | 1.2:+54156078 | MS.gene50576:CDS |
| ATCTACCGGCGTGGTGGTGG+TGG | 0.506650 | 1.2:-54155819 | None:intergenic |
| GGGATTGTTATCGGCGGCGA+AGG | 0.511793 | 1.2:+54156123 | MS.gene50576:CDS |
| GGTCTTGACGATCGAGGCAC+TGG | 0.513418 | 1.2:+54155929 | MS.gene50576:CDS |
| TGAATCTACCGGCGTGGTGG+TGG | 0.515249 | 1.2:-54155822 | None:intergenic |
| CATAGTTATGAGGTCAGTGC+TGG | 0.516035 | 1.2:-54157627 | None:intergenic |
| TCGATGCTGCAGAAATGTCC+TGG | 0.517320 | 1.2:+54156244 | MS.gene50576:CDS |
| GACGGAGGAGTTGAAGCTTA+GGG | 0.522111 | 1.2:+54156189 | MS.gene50576:CDS |
| TTGATTCGAGCGGTTTGCCT+GGG | 0.522215 | 1.2:+54156062 | MS.gene50576:CDS |
| TATATGCTGTAGATTTGCAC+TGG | 0.525532 | 1.2:-54158929 | None:intergenic |
| GTTTAAAGAAACTCAGTTTG+TGG | 0.528026 | 1.2:+54158980 | MS.gene50576:CDS |
| AGTCGAGGCTATCCAAAGTC+AGG | 0.528185 | 1.2:+54159353 | MS.gene50576:CDS |
| TTGAGGAGGTTACCGCCGGC+GGG | 0.528416 | 1.2:+54156103 | MS.gene50576:CDS |
| ACCTCCCATCGTAAATTCCC+AGG | 0.528720 | 1.2:-54156079 | None:intergenic |
| TTTGGTGATGGTGATGGAGA+TGG | 0.530866 | 1.2:+54155983 | MS.gene50576:CDS |
| TCTTTGACACCGCAACCAAT+CGG | 0.534722 | 1.2:+54156748 | MS.gene50576:CDS |
| TGGGAAATTAGGATCACATA+TGG | 0.540618 | 1.2:-54158863 | None:intergenic |
| CACAACCACCACCACCACGC+CGG | 0.541400 | 1.2:+54155814 | MS.gene50576:CDS |
| ATCCTTCAATCATAGTTATG+AGG | 0.542576 | 1.2:-54157637 | None:intergenic |
| AAACCTCAAAAGCCTCAAGA+TGG | 0.542982 | 1.2:+54157344 | MS.gene50576:CDS |
| TGATAATGCAGGGATGAACT+AGG | 0.544759 | 1.2:+54157300 | MS.gene50576:intron |
| GGGAGACGGCGAGGAAGCTG+TGG | 0.544858 | 1.2:+54156161 | MS.gene50576:CDS |
| AATCCAACATGAACCTTCAC+CGG | 0.547681 | 1.2:-54156214 | None:intergenic |
| GTGTAAGGGATGGAGGGAGA+CGG | 0.554978 | 1.2:+54156147 | MS.gene50576:CDS |
| TTTGAGGAGGTTACCGCCGG+CGG | 0.555516 | 1.2:+54156102 | MS.gene50576:CDS |
| AGCGCTCGCCGGAGATTCGA+CGG | 0.559630 | 1.2:-54155896 | None:intergenic |
| AGCGAAAGCCTCAAAATCCC+AGG | 0.560281 | 1.2:-54156262 | None:intergenic |
| TAGAACAACCTTCCATCTTG+AGG | 0.561903 | 1.2:-54157356 | None:intergenic |
| GGCTTTCGCTTAGAATGGAA+AGG | 0.562043 | 1.2:+54156275 | MS.gene50576:CDS |
| TTTGCCTGGGAATTTACGAT+GGG | 0.562437 | 1.2:+54156075 | MS.gene50576:CDS |
| GCACTGGACTTGATCTGTTG+AGG | 0.563835 | 1.2:+54155945 | MS.gene50576:CDS |
| GACGATAAAGCGTTTGGTGA+TGG | 0.566160 | 1.2:+54155971 | MS.gene50576:CDS |
| TCTACCTGATGGCTCCAAAA+GGG | 0.566567 | 1.2:+54159651 | MS.gene50576:CDS |
| CTCTAGATTTGGATAGCTTG+AGG | 0.571915 | 1.2:-54158370 | None:intergenic |
| CGATGCTGCAGAAATGTCCT+GGG | 0.572129 | 1.2:+54156245 | MS.gene50576:CDS |
| CGTCAAACGAAAGCGCTCGC+CGG | 0.573225 | 1.2:-54155907 | None:intergenic |
| TTGTCAGGATTTGTTAGTCG+AGG | 0.573290 | 1.2:+54159338 | MS.gene50576:CDS |
| TAGAGTTGCTTGACCTCAGT+GGG | 0.573574 | 1.2:+54158388 | MS.gene50576:CDS |
| CCTTCTAAACGTCTACCTGA+TGG | 0.573862 | 1.2:+54159640 | MS.gene50576:CDS |
| TCCTTATTTACTTAGTGGCG+AGG | 0.573887 | 1.2:+54159681 | MS.gene50576:CDS |
| TCTGCACTCTCTGTCTAAGA+TGG | 0.574052 | 1.2:+54157434 | MS.gene50576:CDS |
| TCACATTAGGGCAAAGAGCA+AGG | 0.574084 | 1.2:-54158683 | None:intergenic |
| GATGGTGATGGAGATGGAGA+TGG | 0.574313 | 1.2:+54155989 | MS.gene50576:CDS |
| GTAATACCCATTGATCCGAT+TGG | 0.575015 | 1.2:-54156763 | None:intergenic |
| CGGCGAAGGTGTGTAAGGGA+TGG | 0.576084 | 1.2:+54156137 | MS.gene50576:CDS |
| AAAGCGTTTGGTGATGGTGA+TGG | 0.580418 | 1.2:+54155977 | MS.gene50576:CDS |
| GAAGGTGTGTAAGGGATGGA+GGG | 0.586174 | 1.2:+54156141 | MS.gene50576:CDS |
| CGATGAATCTACCGGCGTGG+TGG | 0.586581 | 1.2:-54155825 | None:intergenic |
| GTTCCGGTGAAGGTTCATGT+TGG | 0.588296 | 1.2:+54156211 | MS.gene50576:CDS |
| CTCAAAAGCCTCAAGATGGA+AGG | 0.589378 | 1.2:+54157348 | MS.gene50576:CDS |
| GTTTGCCTGGGAATTTACGA+TGG | 0.594948 | 1.2:+54156074 | MS.gene50576:CDS |
| TATCGTTTCTGTACCGTCTG+CGG | 0.597284 | 1.2:+54155853 | MS.gene50576:CDS |
| CAGTCCATAAGTTCAAGAAG+TGG | 0.599028 | 1.2:-54158832 | None:intergenic |
| ACTTCCGTGTAATGTGCTTG+TGG | 0.602265 | 1.2:+54160061 | MS.gene50576:CDS |
| CCAACCGCTGACGAAAATAA+CGG | 0.604163 | 1.2:+54158889 | MS.gene50576:CDS |
| AAACGTGGTAGTTACAATTG+TGG | 0.606563 | 1.2:+54155734 | MS.gene50576:CDS |
| AGGGATGGAGGGAGACGGCG+AGG | 0.611493 | 1.2:+54156152 | MS.gene50576:CDS |
| GCCGCGTCGCAATCTTCACG+CGG | 0.616141 | 1.2:+54155671 | MS.gene50576:CDS |
| CGAATCACCGAGACCGCAGA+CGG | 0.619376 | 1.2:-54155866 | None:intergenic |
| ATTGAAACTCACATCCAAGC+CGG | 0.620954 | 1.2:-54159010 | None:intergenic |
| CAGTCCACAAGCACATTACA+CGG | 0.620998 | 1.2:-54160065 | None:intergenic |
| GCCGATAACAATCCCGCCGG+CGG | 0.621466 | 1.2:-54156115 | None:intergenic |
| TTAAAGAAACTCAGTTTGTG+GGG | 0.625994 | 1.2:+54158982 | MS.gene50576:CDS |
| TCGGCGGCGAAGGTGTGTAA+GGG | 0.627171 | 1.2:+54156133 | MS.gene50576:CDS |
| GAGGAAGCTGTGGAAAGCGA+CGG | 0.628768 | 1.2:+54156171 | MS.gene50576:CDS |
| GCCGCCGATAACAATCCCGC+CGG | 0.629360 | 1.2:-54156118 | None:intergenic |
| GCGTGAAGATTGCGACGCGG+CGG | 0.630010 | 1.2:-54155669 | None:intergenic |
| GGAAGGTTGTTCTAATCTAG+GGG | 0.635613 | 1.2:+54157365 | MS.gene50576:CDS |
| AGTTACAATTGTGGACGTTG+TGG | 0.636586 | 1.2:+54155743 | MS.gene50576:CDS |
| TAGACAAACTAGATGAAGAG+AGG | 0.636819 | 1.2:-54157395 | None:intergenic |
| GTAGACGTTTAGAAGGCGAA+TGG | 0.637230 | 1.2:-54159633 | None:intergenic |
| TCTAGAACCAGATCTAGATG+TGG | 0.637574 | 1.2:+54156036 | MS.gene50576:CDS |
| CTTCTTGAACTTATGGACTG+TGG | 0.641932 | 1.2:+54158835 | MS.gene50576:CDS |
| ATAGATAACGATGAATCTAC+CGG | 0.642583 | 1.2:-54155833 | None:intergenic |
| AGTGAAATCTCTCTCAGCTG+CGG | 0.645007 | 1.2:-54157581 | None:intergenic |
| CTAGAGTTGCTTGACCTCAG+TGG | 0.647313 | 1.2:+54158387 | MS.gene50576:CDS |
| GAAGCTGTGGAAAGCGACGG+AGG | 0.650091 | 1.2:+54156174 | MS.gene50576:CDS |
| GAAGGTTGTTCTAATCTAGG+GGG | 0.651856 | 1.2:+54157366 | MS.gene50576:CDS |
| TTTGACGGTCTTGACGATCG+AGG | 0.668066 | 1.2:+54155923 | MS.gene50576:CDS |
| GCCGGCGGGATTGTTATCGG+CGG | 0.681604 | 1.2:+54156117 | MS.gene50576:CDS |
| AGATCTGGCATAAGTGACAG+TGG | 0.684251 | 1.2:+54158612 | MS.gene50576:intron |
| GCCGCGTGAAGATTGCGACG+CGG | 0.689777 | 1.2:-54155672 | None:intergenic |
| GCGTCGCAATCTTCACGCGG+CGG | 0.696177 | 1.2:+54155674 | MS.gene50576:CDS |
| TAACGATGAATCTACCGGCG+TGG | 0.708007 | 1.2:-54155828 | None:intergenic |
| GCTCGCCGGAGATTCGACGG+TGG | 0.736622 | 1.2:-54155893 | None:intergenic |
| GATGTGGAGATTGATTCGAG+CGG | 0.746668 | 1.2:+54156052 | MS.gene50576:CDS |
| ACATCCATATAGCTTCAATG+CGG | 0.786151 | 1.2:+54157687 | MS.gene50576:CDS |
| GTACAGATTCATACCCACTG+AGG | 0.831236 | 1.2:-54158401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTAATTAATTGGTT+TGG | + | chr1.2:54156479-54156498 | MS.gene50576:intron | 10.0% |
| !! | ATCTCAATTTATTAATTAAT+TGG | + | chr1.2:54156474-54156493 | MS.gene50576:intron | 10.0% |
| !!! | GATTATTTTCATTTATTAAT+TGG | + | chr1.2:54159261-54159280 | MS.gene50576:intron | 10.0% |
| !! | AATACACACTAATAAAAATT+AGG | + | chr1.2:54158051-54158070 | MS.gene50576:intron | 15.0% |
| !! | AATCAATCATACAATTTAAA+AGG | - | chr1.2:54159245-54159264 | None:intergenic | 15.0% |
| !! | CTAATTTAATCATGAATTAA+TGG | + | chr1.2:54156358-54156377 | MS.gene50576:intron | 15.0% |
| !! | CTTTGATTATAATTTATCTA+TGG | - | chr1.2:54158500-54158519 | None:intergenic | 15.0% |
| !! | TAAAAAAGAATATGCATTAA+TGG | - | chr1.2:54159052-54159071 | None:intergenic | 15.0% |
| !! | TTTCACATTCAAAATAAAAT+CGG | - | chr1.2:54159964-54159983 | None:intergenic | 15.0% |
| !!! | ATTAATGCATATTCTTTTTT+AGG | + | chr1.2:54159051-54159070 | MS.gene50576:intron | 15.0% |
| !! | AAAACATATTGTGTTTATCT+AGG | + | chr1.2:54159738-54159757 | MS.gene50576:intron | 20.0% |
| !! | AAAAGGATGATGAAAAAAAT+TGG | + | chr1.2:54156506-54156525 | MS.gene50576:intron | 20.0% |
| !! | AATTAATCTTATTCTTAACG+TGG | - | chr1.2:54156318-54156337 | None:intergenic | 20.0% |
| !! | ACAATAAATTGCCAAATAAA+AGG | - | chr1.2:54157762-54157781 | None:intergenic | 20.0% |
| !! | AGCATTGTAGTTAAAATAAT+TGG | - | chr1.2:54158024-54158043 | None:intergenic | 20.0% |
| !! | TCCAAATATACAATTAATCA+GGG | + | chr1.2:54158284-54158303 | MS.gene50576:intron | 20.0% |
| !! | TTTAAGAAATCAAGTTTGAT+GGG | + | chr1.2:54158576-54158595 | MS.gene50576:intron | 20.0% |
| !!! | AAGAAAAATTGGATTTTCTA+GGG | + | chr1.2:54159892-54159911 | MS.gene50576:intron | 20.0% |
| !!! | TTAATTGGTTTGGTTATAAA+AGG | + | chr1.2:54156489-54156508 | MS.gene50576:intron | 20.0% |
| !!! | TTATTTGATAGTTACAAAAC+AGG | - | chr1.2:54159199-54159218 | None:intergenic | 20.0% |
| !!! | TTCTTTTCAAAATTATTTGC+AGG | + | chr1.2:54159090-54159109 | MS.gene50576:intron | 20.0% |
| !!! | TTTCTTTCCTTTTTTTGTAT+CGG | - | chr1.2:54155717-54155736 | None:intergenic | 20.0% |
| !!! | TTTTTAAAATGTATTTGCCT+TGG | + | chr1.2:54158445-54158464 | MS.gene50576:intron | 20.0% |
| ! | AAAGTAAGTTTGTGTATCAA+TGG | + | chr1.2:54159814-54159833 | MS.gene50576:intron | 25.0% |
| ! | ACAAACTGAGTTTCTTTAAA+CGG | - | chr1.2:54158981-54159000 | None:intergenic | 25.0% |
| ! | ACATTATTAGCATATATGCA+TGG | + | chr1.2:54157225-54157244 | MS.gene50576:intron | 25.0% |
| ! | ATAACTATGATTGAAGGATT+GGG | + | chr1.2:54157641-54157660 | MS.gene50576:CDS | 25.0% |
| ! | ATATATTTATCCGAAACTCA+TGG | + | chr1.2:54158152-54158171 | MS.gene50576:intron | 25.0% |
| ! | ATTAATATCTTCAACTGAGT+GGG | - | chr1.2:54158255-54158274 | None:intergenic | 25.0% |
| ! | CAAAGTTACAATCTATAACA+TGG | - | chr1.2:54157073-54157092 | None:intergenic | 25.0% |
| ! | CAAATATACAATTAATCAGG+GGG | + | chr1.2:54158286-54158305 | MS.gene50576:intron | 25.0% |
| ! | CCAAATATACAATTAATCAG+GGG | + | chr1.2:54158285-54158304 | MS.gene50576:intron | 25.0% |
| ! | GTCCAAATATACAATTAATC+AGG | + | chr1.2:54158283-54158302 | MS.gene50576:intron | 25.0% |
| ! | GTTTAAGAAATCAAGTTTGA+TGG | + | chr1.2:54158575-54158594 | MS.gene50576:intron | 25.0% |
| ! | GTTTGTTTGATATTTATTCC+AGG | + | chr1.2:54159536-54159555 | MS.gene50576:intron | 25.0% |
| ! | TCTAAGTATGCAATTAATGT+TGG | + | chr1.2:54156863-54156882 | MS.gene50576:intron | 25.0% |
| ! | TGATTTCTTAAACAAAGACA+TGG | - | chr1.2:54158568-54158587 | None:intergenic | 25.0% |
| ! | TTTAAAGAAACTCAGTTTGT+GGG | + | chr1.2:54158981-54159000 | MS.gene50576:CDS | 25.0% |
| !! | AAAATCCAATTTTTCTTCTG+TGG | - | chr1.2:54159889-54159908 | None:intergenic | 25.0% |
| !! | AACCAATGCTTTTAAATTGT+AGG | + | chr1.2:54157547-54157566 | MS.gene50576:intron | 25.0% |
| !! | ATATTGTGTTTATCTAGGAT+GGG | + | chr1.2:54159743-54159762 | MS.gene50576:intron | 25.0% |
| !! | ATTTATTAATTGGTTCAGAG+AGG | + | chr1.2:54159271-54159290 | MS.gene50576:intron | 25.0% |
| !! | CTACAAACTTTTATAACAGA+TGG | - | chr1.2:54157829-54157848 | None:intergenic | 25.0% |
| !! | GAAGAAAAATTGGATTTTCT+AGG | + | chr1.2:54159891-54159910 | MS.gene50576:intron | 25.0% |
| !! | TACCTACAATTTAAAAGCAT+TGG | - | chr1.2:54157552-54157571 | None:intergenic | 25.0% |
| !! | TTCTATGTGTAATGAGTTTT+CGG | + | chr1.2:54156830-54156849 | MS.gene50576:intron | 25.0% |
| !! | TTTTATACAATGTGAAAGTG+AGG | + | chr1.2:54156897-54156916 | MS.gene50576:intron | 25.0% |
| !!! | ATCCTTTATGATTTGTTTGT+AGG | + | chr1.2:54159582-54159601 | MS.gene50576:intron | 25.0% |
| !!! | ATTACAGTTATGTCCTTTTT+TGG | - | chr1.2:54155774-54155793 | None:intergenic | 25.0% |
| !!! | GGATATTTTAAATTAGAACC+AGG | - | chr1.2:54159566-54159585 | None:intergenic | 25.0% |
| !!! | TGAGTTTTGTGAAATAATTG+AGG | - | chr1.2:54158732-54158751 | None:intergenic | 25.0% |
| !!! | TTACAGTTATGTCCTTTTTT+GGG | - | chr1.2:54155773-54155792 | None:intergenic | 25.0% |
| ACAAAAAAAGGAAAGAAACG+TGG | + | chr1.2:54155719-54155738 | MS.gene50576:CDS | 30.0% | |
| ACATAGAAGCAGCAAAAAAA+AGG | - | chr1.2:54156818-54156837 | None:intergenic | 30.0% | |
| ACTTCAACGTCAATAAGAAT+CGG | - | chr1.2:54158426-54158445 | None:intergenic | 30.0% | |
| AGATCGATGCACAAAAAAAT+AGG | + | chr1.2:54156441-54156460 | MS.gene50576:intron | 30.0% | |
| ATAGATAACGATGAATCTAC+CGG | - | chr1.2:54155836-54155855 | None:intergenic | 30.0% | |
| ATCCTTCAATCATAGTTATG+AGG | - | chr1.2:54157640-54157659 | None:intergenic | 30.0% | |
| ATGCAGAGAAAATTAGTTCA+AGG | - | chr1.2:54159492-54159511 | None:intergenic | 30.0% | |
| ATGTGACAAAAGATTACTTG+AGG | - | chr1.2:54158709-54158728 | None:intergenic | 30.0% | |
| ATTTCGGATACTCATAACTT+TGG | - | chr1.2:54158102-54158121 | None:intergenic | 30.0% | |
| CAGTTAAAAGATCGGAATTT+CGG | - | chr1.2:54158118-54158137 | None:intergenic | 30.0% | |
| CATAACTATGATTGAAGGAT+TGG | + | chr1.2:54157640-54157659 | MS.gene50576:CDS | 30.0% | |
| CATAGAAGCAGCAAAAAAAA+GGG | - | chr1.2:54156817-54156836 | None:intergenic | 30.0% | |
| CATATTGTGTTTATCTAGGA+TGG | + | chr1.2:54159742-54159761 | MS.gene50576:intron | 30.0% | |
| CATTAATATCTTCAACTGAG+TGG | - | chr1.2:54158256-54158275 | None:intergenic | 30.0% | |
| CATTGTAAAAGACCAAACAT+AGG | + | chr1.2:54157942-54157961 | MS.gene50576:intron | 30.0% | |
| CCAATTAATAATGCCAAACA+CGG | - | chr1.2:54156988-54157007 | None:intergenic | 30.0% | |
| CCCCTGATTAATTGTATATT+TGG | - | chr1.2:54158288-54158307 | None:intergenic | 30.0% | |
| CTGAAATTTAAATCTTCCGT+GGG | - | chr1.2:54157129-54157148 | None:intergenic | 30.0% | |
| GAAAGTTCCGATACAAAAAA+AGG | + | chr1.2:54155707-54155726 | MS.gene50576:CDS | 30.0% | |
| GACCTACAAACAAATCATAA+AGG | - | chr1.2:54159587-54159606 | None:intergenic | 30.0% | |
| GATTTCATCCATTTACATCA+TGG | - | chr1.2:54157036-54157055 | None:intergenic | 30.0% | |
| GTTTAAAGAAACTCAGTTTG+TGG | + | chr1.2:54158980-54158999 | MS.gene50576:CDS | 30.0% | |
| TACAATTTAAAAGGAAGTCC+TGG | - | chr1.2:54159236-54159255 | None:intergenic | 30.0% | |
| TAGTCCAACAGTTAAAAGAT+CGG | - | chr1.2:54158126-54158145 | None:intergenic | 30.0% | |
| TCAATATGAATGCAATCTCA+TGG | - | chr1.2:54157515-54157534 | None:intergenic | 30.0% | |
| TGCAGAGAAAATTAGTTCAA+GGG | - | chr1.2:54159491-54159510 | None:intergenic | 30.0% | |
| TTAAAGAAACTCAGTTTGTG+GGG | + | chr1.2:54158982-54159001 | MS.gene50576:CDS | 30.0% | |
| TTACAAAACAGGAACATGAA+GGG | - | chr1.2:54159188-54159207 | None:intergenic | 30.0% | |
| TTCAAATGCCATGATGTAAA+TGG | + | chr1.2:54157025-54157044 | MS.gene50576:intron | 30.0% | |
| TTTCGGATACTCATAACTTT+GGG | - | chr1.2:54158101-54158120 | None:intergenic | 30.0% | |
| ! | ATAGATTTTAGATCCGTGTT+TGG | + | chr1.2:54156972-54156991 | MS.gene50576:intron | 30.0% |
| ! | ATTGAGGTTTGCCTTTTATT+TGG | + | chr1.2:54157748-54157767 | MS.gene50576:intron | 30.0% |
| ! | GTCTGTTTTCATGTTGTTAT+TGG | + | chr1.2:54157780-54157799 | MS.gene50576:intron | 30.0% |
| ! | TCTGAAATTTAAATCTTCCG+TGG | - | chr1.2:54157130-54157149 | None:intergenic | 30.0% |
| ! | TGTTCAACTATGATAATGCA+GGG | + | chr1.2:54157290-54157309 | MS.gene50576:intron | 30.0% |
| ! | TTCTTTTGTCAGCAACAAAT+CGG | - | chr1.2:54157326-54157345 | None:intergenic | 30.0% |
| ! | TTGTTCAACTATGATAATGC+AGG | + | chr1.2:54157289-54157308 | MS.gene50576:intron | 30.0% |
| !! | AATTCCGATCTTTTAACTGT+TGG | + | chr1.2:54158119-54158138 | MS.gene50576:intron | 30.0% |
| !! | AGAAGTCTTTTAAGTGTTTC+AGG | - | chr1.2:54158663-54158682 | None:intergenic | 30.0% |
| !! | ATAATTTGTTGCAACTTACC+AGG | + | chr1.2:54159215-54159234 | MS.gene50576:intron | 30.0% |
| !! | CTATGTTTGGTCTTTTACAA+TGG | - | chr1.2:54157944-54157963 | None:intergenic | 30.0% |
| !! | GAAGTCTTTTAAGTGTTTCA+GGG | - | chr1.2:54158662-54158681 | None:intergenic | 30.0% |
| !! | TCTTTTAACTGTTGGACTAA+AGG | + | chr1.2:54158127-54158146 | MS.gene50576:intron | 30.0% |
| !!! | TATGCTTGATGATTAGCTTT+TGG | - | chr1.2:54158957-54158976 | None:intergenic | 30.0% |
| !!! | TTTGCTTTTTTTCAGGTTCA+GGG | - | chr1.2:54160028-54160047 | None:intergenic | 30.0% |
| AAACGTGGTAGTTACAATTG+TGG | + | chr1.2:54155734-54155753 | MS.gene50576:CDS | 35.0% | |
| AACCTGAAAAAAAGCAAAGG+AGG | + | chr1.2:54160030-54160049 | MS.gene50576:CDS | 35.0% | |
| ACATCCATATAGCTTCAATG+CGG | + | chr1.2:54157687-54157706 | MS.gene50576:CDS | 35.0% | |
| AGATTACTTGAGGTCACATT+AGG | - | chr1.2:54158699-54158718 | None:intergenic | 35.0% | |
| ATATTTATTCCAGGCTTTCC+TGG | + | chr1.2:54159545-54159564 | MS.gene50576:intron | 35.0% | |
| ATCTCCATAGATTCCAGATT+AGG | - | chr1.2:54156723-54156742 | None:intergenic | 35.0% | |
| ATGGAAGGTTGTTCTAATCT+AGG | + | chr1.2:54157363-54157382 | MS.gene50576:CDS | 35.0% | |
| ATTATGCACACCATGAGTTT+CGG | - | chr1.2:54158165-54158184 | None:intergenic | 35.0% | |
| ATTCGACATGATCCTATGTT+TGG | - | chr1.2:54157957-54157976 | None:intergenic | 35.0% | |
| CACTGCAACATGAAACAAAT+CGG | - | chr1.2:54156659-54156678 | None:intergenic | 35.0% | |
| CCGTGTTTGGCATTATTAAT+TGG | + | chr1.2:54156985-54157004 | MS.gene50576:intron | 35.0% | |
| CTATAGCAGGAAAAACATTG+CGG | - | chr1.2:54159609-54159628 | None:intergenic | 35.0% | |
| CTGAACCTGAAAAAAAGCAA+AGG | + | chr1.2:54160027-54160046 | MS.gene50576:CDS | 35.0% | |
| GAACACTACTGAAACATGAA+AGG | - | chr1.2:54159396-54159415 | None:intergenic | 35.0% | |
| GACCTCATAACTATGATTGA+AGG | + | chr1.2:54157635-54157654 | MS.gene50576:CDS | 35.0% | |
| GATTACTTGAGGTCACATTA+GGG | - | chr1.2:54158698-54158717 | None:intergenic | 35.0% | |
| GTAAATGGATGAAATCCTGA+TGG | + | chr1.2:54157040-54157059 | MS.gene50576:intron | 35.0% | |
| GTTACAAAACAGGAACATGA+AGG | - | chr1.2:54159189-54159208 | None:intergenic | 35.0% | |
| TACAAAACAGGAACATGAAG+GGG | - | chr1.2:54159187-54159206 | None:intergenic | 35.0% | |
| TAGACAAACTAGATGAAGAG+AGG | - | chr1.2:54157398-54157417 | None:intergenic | 35.0% | |
| TATATGCTGTAGATTTGCAC+TGG | - | chr1.2:54158932-54158951 | None:intergenic | 35.0% | |
| TCTCCATAGATTCCAGATTA+GGG | - | chr1.2:54156722-54156741 | None:intergenic | 35.0% | |
| TCTTATTCTTAACGTGGATC+TGG | - | chr1.2:54156312-54156331 | None:intergenic | 35.0% | |
| TCTTGTAGAAATCTGCATTC+AGG | + | chr1.2:54159157-54159176 | MS.gene50576:CDS | 35.0% | |
| TGGAAGGTTGTTCTAATCTA+GGG | + | chr1.2:54157364-54157383 | MS.gene50576:CDS | 35.0% | |
| TGGGAAATTAGGATCACATA+TGG | - | chr1.2:54158866-54158885 | None:intergenic | 35.0% | |
| TTGGAAAATGTTCATGCAAC+AGG | + | chr1.2:54159315-54159334 | MS.gene50576:CDS | 35.0% | |
| ! | ATCCAATTTTTCTTCTGTGG+AGG | - | chr1.2:54159886-54159905 | None:intergenic | 35.0% |
| ! | ATTGCCACTTCTTGAACTTA+TGG | + | chr1.2:54158828-54158847 | MS.gene50576:CDS | 35.0% |
| ! | CATCTAGTTTGTCTACACTT+TGG | + | chr1.2:54157403-54157422 | MS.gene50576:CDS | 35.0% |
| ! | CATGAACATTTTCCAAAGTG+GGG | - | chr1.2:54159311-54159330 | None:intergenic | 35.0% |
| ! | GCATGAACATTTTCCAAAGT+GGG | - | chr1.2:54159312-54159331 | None:intergenic | 35.0% |
| ! | TGCATGAACATTTTCCAAAG+TGG | - | chr1.2:54159313-54159332 | None:intergenic | 35.0% |
| ! | TTTTGTATCGGAACTTTCAG+CGG | - | chr1.2:54155705-54155724 | None:intergenic | 35.0% |
| !! | AAAAGCATTGGTTAGCAACT+AGG | - | chr1.2:54157540-54157559 | None:intergenic | 35.0% |
| !! | GTTTGGTCTTTTACAATGGT+TGG | - | chr1.2:54157940-54157959 | None:intergenic | 35.0% |
| !! | TTTTCCGTTATTTTCGTCAG+CGG | - | chr1.2:54158896-54158915 | None:intergenic | 35.0% |
| !!! | AGTTATGTCCTTTTTTGGGA+AGG | - | chr1.2:54155769-54155788 | None:intergenic | 35.0% |
| !!! | ATCCTCCTTTGCTTTTTTTC+AGG | - | chr1.2:54160035-54160054 | None:intergenic | 35.0% |
| !!! | CTTTGCTTTTTTTCAGGTTC+AGG | - | chr1.2:54160029-54160048 | None:intergenic | 35.0% |
| !!! | TGATTTTGATTCAACGATGC+TGG | + | chr1.2:54156677-54156696 | MS.gene50576:CDS | 35.0% |
| !!! | TTGCTTTTTTTCAGGTTCAG+GGG | - | chr1.2:54160027-54160046 | None:intergenic | 35.0% |
| AAACCTCAAAAGCCTCAAGA+TGG | + | chr1.2:54157344-54157363 | MS.gene50576:CDS | 40.0% | |
| AAAGCCGCATTGAAGCTATA+TGG | - | chr1.2:54157694-54157713 | None:intergenic | 40.0% | |
| AAATTAGAACCAGGAAAGCC+TGG | - | chr1.2:54159557-54159576 | None:intergenic | 40.0% | |
| AATCCAACATGAACCTTCAC+CGG | - | chr1.2:54156217-54156236 | None:intergenic | 40.0% | |
| AATCTGCTCTCACATGTTTC+AGG | + | chr1.2:54158781-54158800 | MS.gene50576:intron | 40.0% | |
| ACCTCGCCACTAAGTAAATA+AGG | - | chr1.2:54159685-54159704 | None:intergenic | 40.0% | |
| AGATGGAATTGCAACACATG+TGG | - | chr1.2:54157812-54157831 | None:intergenic | 40.0% | |
| AGATGGAGATGGAGATTTGT+TGG | + | chr1.2:54156000-54156019 | MS.gene50576:CDS | 40.0% | |
| AGATTCAGATCATTCAGCTC+TGG | - | chr1.2:54159133-54159152 | None:intergenic | 40.0% | |
| AGCCTCCACAGAAGAAAAAT+TGG | + | chr1.2:54159881-54159900 | MS.gene50576:intron | 40.0% | |
| AGGTCAAGCAACTCTAGATT+TGG | - | chr1.2:54158384-54158403 | None:intergenic | 40.0% | |
| AGTTACAATTGTGGACGTTG+TGG | + | chr1.2:54155743-54155762 | MS.gene50576:CDS | 40.0% | |
| ATTGAAACTCACATCCAAGC+CGG | - | chr1.2:54159013-54159032 | None:intergenic | 40.0% | |
| CAAAGTCAGGTAACAAAGTC+AGG | + | chr1.2:54159366-54159385 | MS.gene50576:intron | 40.0% | |
| CAGTCCATAAGTTCAAGAAG+TGG | - | chr1.2:54158835-54158854 | None:intergenic | 40.0% | |
| CGAATGCTTTCTCTTGTTCT+TGG | + | chr1.2:54158312-54158331 | MS.gene50576:CDS | 40.0% | |
| CTCTAGATTTGGATAGCTTG+AGG | - | chr1.2:54158373-54158392 | None:intergenic | 40.0% | |
| CTCTGGGCAGTTTAAGTATA+GGG | - | chr1.2:54159116-54159135 | None:intergenic | 40.0% | |
| CTGACTTTGTTACCTGACTT+TGG | - | chr1.2:54159368-54159387 | None:intergenic | 40.0% | |
| GAAGGTTGTTCTAATCTAGG+GGG | + | chr1.2:54157366-54157385 | MS.gene50576:CDS | 40.0% | |
| GATTCAGATCATTCAGCTCT+GGG | - | chr1.2:54159132-54159151 | None:intergenic | 40.0% | |
| GGAAGGTTGTTCTAATCTAG+GGG | + | chr1.2:54157365-54157384 | MS.gene50576:CDS | 40.0% | |
| GTAATACCCATTGATCCGAT+TGG | - | chr1.2:54156766-54156785 | None:intergenic | 40.0% | |
| TAACATGGCAATACACCATC+AGG | - | chr1.2:54157058-54157077 | None:intergenic | 40.0% | |
| TAGAACAACCTTCCATCTTG+AGG | - | chr1.2:54157359-54157378 | None:intergenic | 40.0% | |
| TATTTCACAGACACCGCATT+TGG | - | chr1.2:54157993-54158012 | None:intergenic | 40.0% | |
| TCAATCTCCACATCTAGATC+TGG | - | chr1.2:54156046-54156065 | None:intergenic | 40.0% | |
| TGTGTCTTTACTGTGTGAAC+TGG | + | chr1.2:54159848-54159867 | MS.gene50576:intron | 40.0% | |
| TTTATACTGCCTGCCAAATG+CGG | + | chr1.2:54157977-54157996 | MS.gene50576:intron | 40.0% | |
| TTTGCCTGGGAATTTACGAT+GGG | + | chr1.2:54156075-54156094 | MS.gene50576:CDS | 40.0% | |
| ! | AGAAATGTCCTGGGATTTTG+AGG | + | chr1.2:54156254-54156273 | MS.gene50576:CDS | 40.0% |
| ! | ATGCCCTAATCTGGAATCTA+TGG | + | chr1.2:54156716-54156735 | MS.gene50576:CDS | 40.0% |
| ! | ATTTACGATGGGAGGTTTTG+AGG | + | chr1.2:54156086-54156105 | MS.gene50576:CDS | 40.0% |
| ! | CGGGTTCCTTATTTACTTAG+TGG | + | chr1.2:54159676-54159695 | MS.gene50576:CDS | 40.0% |
| ! | CTTCTTGAACTTATGGACTG+TGG | + | chr1.2:54158835-54158854 | MS.gene50576:CDS | 40.0% |
| ! | TCCTTATTTACTTAGTGGCG+AGG | + | chr1.2:54159681-54159700 | MS.gene50576:CDS | 40.0% |
| ! | TCTAGAACCAGATCTAGATG+TGG | + | chr1.2:54156036-54156055 | MS.gene50576:CDS | 40.0% |
| ! | TGATAATGCAGGGATGAACT+AGG | + | chr1.2:54157300-54157319 | MS.gene50576:intron | 40.0% |
| ! | TTTGAGGCTTTCGCTTAGAA+TGG | + | chr1.2:54156270-54156289 | MS.gene50576:CDS | 40.0% |
| !! | AGATGGAGATTTGTTGGATC+TGG | + | chr1.2:54156006-54156025 | MS.gene50576:CDS | 40.0% |
| !! | TTGTCAGGATTTGTTAGTCG+AGG | + | chr1.2:54159338-54159357 | MS.gene50576:CDS | 40.0% |
| !!! | GCAACTTTTGTTTTGTCCCA+CGG | + | chr1.2:54157110-54157129 | MS.gene50576:intron | 40.0% |
| !!! | TGCTTTTTCATGCCCTAATC+TGG | + | chr1.2:54156707-54156726 | MS.gene50576:CDS | 40.0% |
| AACTTTGCCTTCATCAGCAG+AGG | + | chr1.2:54157086-54157105 | MS.gene50576:intron | 45.0% | |
| ACTTCCGTGTAATGTGCTTG+TGG | + | chr1.2:54160061-54160080 | MS.gene50576:CDS | 45.0% | |
| AGATCTGGCATAAGTGACAG+TGG | + | chr1.2:54158612-54158631 | MS.gene50576:intron | 45.0% | |
| AGTGAAATCTCTCTCAGCTG+CGG | - | chr1.2:54157584-54157603 | None:intergenic | 45.0% | |
| CAGTCCACAAGCACATTACA+CGG | - | chr1.2:54160068-54160087 | None:intergenic | 45.0% | |
| CATAGTTATGAGGTCAGTGC+TGG | - | chr1.2:54157630-54157649 | None:intergenic | 45.0% | |
| CCAACCGCTGACGAAAATAA+CGG | + | chr1.2:54158889-54158908 | MS.gene50576:CDS | 45.0% | |
| CTCAAAAGCCTCAAGATGGA+AGG | + | chr1.2:54157348-54157367 | MS.gene50576:CDS | 45.0% | |
| GGCGAATGGTTATCTATAGC+AGG | - | chr1.2:54159622-54159641 | None:intergenic | 45.0% | |
| GGCTTTCGCTTAGAATGGAA+AGG | + | chr1.2:54156275-54156294 | MS.gene50576:CDS | 45.0% | |
| GGTTGCTGTCATAACAGATC+TGG | + | chr1.2:54158597-54158616 | MS.gene50576:intron | 45.0% | |
| GTACAGATTCATACCCACTG+AGG | - | chr1.2:54158404-54158423 | None:intergenic | 45.0% | |
| GTTTGCCTGGGAATTTACGA+TGG | + | chr1.2:54156074-54156093 | MS.gene50576:CDS | 45.0% | |
| TAGAGTTGCTTGACCTCAGT+GGG | + | chr1.2:54158388-54158407 | MS.gene50576:CDS | 45.0% | |
| TATCGTTTCTGTACCGTCTG+CGG | + | chr1.2:54155853-54155872 | MS.gene50576:CDS | 45.0% | |
| TCACATTAGGGCAAAGAGCA+AGG | - | chr1.2:54158686-54158705 | None:intergenic | 45.0% | |
| TCTACCTGATGGCTCCAAAA+GGG | + | chr1.2:54159651-54159670 | MS.gene50576:CDS | 45.0% | |
| TCTGCACTCTCTGTCTAAGA+TGG | + | chr1.2:54157434-54157453 | MS.gene50576:CDS | 45.0% | |
| TCTTTGACACCGCAACCAAT+CGG | + | chr1.2:54156748-54156767 | MS.gene50576:CDS | 45.0% | |
| TGTTCATGCAACAGGTTGTC+AGG | + | chr1.2:54159323-54159342 | MS.gene50576:CDS | 45.0% | |
| ! | AGGCTTGACGATAAAGCGTT+TGG | + | chr1.2:54155965-54155984 | MS.gene50576:CDS | 45.0% |
| ! | ATAAGGAACCCGAACCCTTT+TGG | - | chr1.2:54159668-54159687 | None:intergenic | 45.0% |
| ! | CTCTTAGTGCTGCTCAATTG+AGG | + | chr1.2:54157732-54157751 | MS.gene50576:CDS | 45.0% |
| ! | CTTCCATCTTGAGGCTTTTG+AGG | - | chr1.2:54157350-54157369 | None:intergenic | 45.0% |
| ! | GACGATAAAGCGTTTGGTGA+TGG | + | chr1.2:54155971-54155990 | MS.gene50576:CDS | 45.0% |
| ! | GCTCTGGGCAGTTTAAGTAT+AGG | - | chr1.2:54159117-54159136 | None:intergenic | 45.0% |
| ! | TCACGCTTCTTTTGTCTCCA+AGG | - | chr1.2:54158465-54158484 | None:intergenic | 45.0% |
| ! | TGGAGACAAAAGAAGCGTGA+TGG | + | chr1.2:54158465-54158484 | MS.gene50576:intron | 45.0% |
| !! | AAAGCGTTTGGTGATGGTGA+TGG | + | chr1.2:54155977-54155996 | MS.gene50576:CDS | 45.0% |
| !! | GATGTGGAGATTGATTCGAG+CGG | + | chr1.2:54156052-54156071 | MS.gene50576:CDS | 45.0% |
| !! | TTTGGTGATGGTGATGGAGA+TGG | + | chr1.2:54155983-54156002 | MS.gene50576:CDS | 45.0% |
| ACCGCAACCAATCGGATCAA+TGG | + | chr1.2:54156756-54156775 | MS.gene50576:CDS | 50.0% | |
| ACCTCCCATCGTAAATTCCC+AGG | - | chr1.2:54156082-54156101 | None:intergenic | 50.0% | |
| AGCGAAAGCCTCAAAATCCC+AGG | - | chr1.2:54156265-54156284 | None:intergenic | 50.0% | |
| AGTCGAGGCTATCCAAAGTC+AGG | + | chr1.2:54159353-54159372 | MS.gene50576:CDS | 50.0% | |
| AGTTGCACCTCTGCTGATGA+AGG | - | chr1.2:54157096-54157115 | None:intergenic | 50.0% | |
| CCGCAACCAATCGGATCAAT+GGG | + | chr1.2:54156757-54156776 | MS.gene50576:CDS | 50.0% | |
| CGATGCTGCAGAAATGTCCT+GGG | + | chr1.2:54156245-54156264 | MS.gene50576:CDS | 50.0% | |
| CGTTGTGGCCTTCCCAAAAA+AGG | + | chr1.2:54155758-54155777 | MS.gene50576:CDS | 50.0% | |
| CTAGAGTTGCTTGACCTCAG+TGG | + | chr1.2:54158387-54158406 | MS.gene50576:CDS | 50.0% | |
| CTGATGGCTCCAAAAGGGTT+CGG | + | chr1.2:54159656-54159675 | MS.gene50576:CDS | 50.0% | |
| CTGCTCTCACATGTTTCAGG+TGG | + | chr1.2:54158784-54158803 | MS.gene50576:intron | 50.0% | |
| GACGGAGGAGTTGAAGCTTA+GGG | + | chr1.2:54156189-54156208 | MS.gene50576:CDS | 50.0% | |
| GCACTGGACTTGATCTGTTG+AGG | + | chr1.2:54155945-54155964 | MS.gene50576:CDS | 50.0% | |
| GCGGTTGGATCTGGGAAATT+AGG | - | chr1.2:54158877-54158896 | None:intergenic | 50.0% | |
| GGAGTTGAAGCTTAGGGTTC+CGG | + | chr1.2:54156195-54156214 | MS.gene50576:CDS | 50.0% | |
| GGCATAAGTGACAGTGGCAT+TGG | + | chr1.2:54158618-54158637 | MS.gene50576:CDS | 50.0% | |
| GTCTACCTGATGGCTCCAAA+AGG | + | chr1.2:54159650-54159669 | MS.gene50576:CDS | 50.0% | |
| GTTCCGGTGAAGGTTCATGT+TGG | + | chr1.2:54156211-54156230 | MS.gene50576:CDS | 50.0% | |
| TAACGATGAATCTACCGGCG+TGG | - | chr1.2:54155831-54155850 | None:intergenic | 50.0% | |
| TCGATGCTGCAGAAATGTCC+TGG | + | chr1.2:54156244-54156263 | MS.gene50576:CDS | 50.0% | |
| TGATGGCTCCAAAAGGGTTC+GGG | + | chr1.2:54159657-54159676 | MS.gene50576:CDS | 50.0% | |
| TTTCGTCAGCGGTTGGATCT+GGG | - | chr1.2:54158885-54158904 | None:intergenic | 50.0% | |
| TTTGACGGTCTTGACGATCG+AGG | + | chr1.2:54155923-54155942 | MS.gene50576:CDS | 50.0% | |
| ! | ACACGAAGGCTTTAGCAGCT+AGG | - | chr1.2:54157192-54157211 | None:intergenic | 50.0% |
| ! | CCCATTGATCCGATTGGTTG+CGG | - | chr1.2:54156760-54156779 | None:intergenic | 50.0% |
| ! | GAAGGTGTGTAAGGGATGGA+GGG | + | chr1.2:54156141-54156160 | MS.gene50576:CDS | 50.0% |
| ! | TAAGCTCTAGCTGCACACGA+AGG | - | chr1.2:54157206-54157225 | None:intergenic | 50.0% |
| ! | TTGATTCGAGCGGTTTGCCT+GGG | + | chr1.2:54156062-54156081 | MS.gene50576:CDS | 50.0% |
| ! | TTTTCGTCAGCGGTTGGATC+TGG | - | chr1.2:54158886-54158905 | None:intergenic | 50.0% |
| !! | ATTGATTCGAGCGGTTTGCC+TGG | + | chr1.2:54156061-54156080 | MS.gene50576:CDS | 50.0% |
| !! | CCGTTATTTTCGTCAGCGGT+TGG | - | chr1.2:54158892-54158911 | None:intergenic | 50.0% |
| !! | GATGGTGATGGAGATGGAGA+TGG | + | chr1.2:54155989-54156008 | MS.gene50576:CDS | 50.0% |
| !!! | GGTCAGTGCTGGCATTTTCT+TGG | - | chr1.2:54157619-54157638 | None:intergenic | 50.0% |
| !!! | TACGATGGGAGGTTTTGAGG+AGG | + | chr1.2:54156089-54156108 | MS.gene50576:CDS | 50.0% |
| CGACGGAGGAGTTGAAGCTT+AGG | + | chr1.2:54156188-54156207 | MS.gene50576:CDS | 55.0% | |
| CTCAGTTTGTGGGGTTGCAC+CGG | + | chr1.2:54158991-54159010 | MS.gene50576:CDS | 55.0% | |
| GAAGCTTAGGGTTCCGGTGA+AGG | + | chr1.2:54156201-54156220 | MS.gene50576:CDS | 55.0% | |
| GAGGAAGCTGTGGAAAGCGA+CGG | + | chr1.2:54156171-54156190 | MS.gene50576:CDS | 55.0% | |
| GCCTGGGAATTTACGATGGG+AGG | + | chr1.2:54156078-54156097 | MS.gene50576:CDS | 55.0% | |
| GTCAACCACCGTCGAATCTC+CGG | + | chr1.2:54155888-54155907 | MS.gene50576:CDS | 55.0% | |
| GTGTAAGGGATGGAGGGAGA+CGG | + | chr1.2:54156147-54156166 | MS.gene50576:CDS | 55.0% | |
| GTTGCTTCAGTGCCCCACTT+TGG | + | chr1.2:54159296-54159315 | MS.gene50576:CDS | 55.0% | |
| TCACAGACACCGCATTTGGC+AGG | - | chr1.2:54157989-54158008 | None:intergenic | 55.0% | |
| TTCTGTACCGTCTGCGGTCT+CGG | + | chr1.2:54155859-54155878 | MS.gene50576:CDS | 55.0% | |
| ! | CGAAGGTGTGTAAGGGATGG+AGG | + | chr1.2:54156140-54156159 | MS.gene50576:CDS | 55.0% |
| ! | GTGGTGGTTGTGGTGGAAAC+TGG | - | chr1.2:54155806-54155825 | None:intergenic | 55.0% |
| !!! | CGAACCCTTTTGGAGCCATC+AGG | - | chr1.2:54159658-54159677 | None:intergenic | 55.0% |
| !!! | GGTTTTGAGGAGGTTACCGC+CGG | + | chr1.2:54156099-54156118 | MS.gene50576:CDS | 55.0% |
| ACCGCCGGCGGGATTGTTAT+CGG | + | chr1.2:54156114-54156133 | MS.gene50576:CDS | 60.0% | |
| CGAATCACCGAGACCGCAGA+CGG | - | chr1.2:54155869-54155888 | None:intergenic | 60.0% | |
| CGATGAATCTACCGGCGTGG+TGG | - | chr1.2:54155828-54155847 | None:intergenic | 60.0% | |
| CGGCGAGCGCTTTCGTTTGA+CGG | + | chr1.2:54155908-54155927 | MS.gene50576:CDS | 60.0% | |
| GAAGCTGTGGAAAGCGACGG+AGG | + | chr1.2:54156174-54156193 | MS.gene50576:CDS | 60.0% | |
| GGGATTGTTATCGGCGGCGA+AGG | + | chr1.2:54156123-54156142 | MS.gene50576:CDS | 60.0% | |
| GGTCTTGACGATCGAGGCAC+TGG | + | chr1.2:54155929-54155948 | MS.gene50576:CDS | 60.0% | |
| TGAATCTACCGGCGTGGTGG+TGG | - | chr1.2:54155825-54155844 | None:intergenic | 60.0% | |
| TTTGAGGAGGTTACCGCCGG+CGG | + | chr1.2:54156102-54156121 | MS.gene50576:CDS | 60.0% | |
| ! | ATCGGCGGCGAAGGTGTGTA+AGG | + | chr1.2:54156132-54156151 | MS.gene50576:CDS | 60.0% |
| ! | CGGCGAAGGTGTGTAAGGGA+TGG | + | chr1.2:54156137-54156156 | MS.gene50576:CDS | 60.0% |
| ! | TCGGCGGCGAAGGTGTGTAA+GGG | + | chr1.2:54156133-54156152 | MS.gene50576:CDS | 60.0% |
| !! | CGTCAAACGAAAGCGCTCGC+CGG | - | chr1.2:54155910-54155929 | None:intergenic | 60.0% |
| !! | TTTGTGGGGTTGCACCGGCT+TGG | + | chr1.2:54158996-54159015 | MS.gene50576:CDS | 60.0% |
| AGCGCTCGCCGGAGATTCGA+CGG | - | chr1.2:54155899-54155918 | None:intergenic | 65.0% | |
| CACAACCACCACCACCACGC+CGG | + | chr1.2:54155814-54155833 | MS.gene50576:CDS | 65.0% | |
| GCCGATAACAATCCCGCCGG+CGG | - | chr1.2:54156118-54156137 | None:intergenic | 65.0% | |
| GCCGCCGATAACAATCCCGC+CGG | - | chr1.2:54156121-54156140 | None:intergenic | 65.0% | |
| GCCGCGTCGCAATCTTCACG+CGG | + | chr1.2:54155671-54155690 | MS.gene50576:CDS | 65.0% | |
| GCCGCGTGAAGATTGCGACG+CGG | - | chr1.2:54155675-54155694 | None:intergenic | 65.0% | |
| GCCGGCGGGATTGTTATCGG+CGG | + | chr1.2:54156117-54156136 | MS.gene50576:CDS | 65.0% | |
| GCGTCGCAATCTTCACGCGG+CGG | + | chr1.2:54155674-54155693 | MS.gene50576:CDS | 65.0% | |
| GCGTGAAGATTGCGACGCGG+CGG | - | chr1.2:54155672-54155691 | None:intergenic | 65.0% | |
| TTGAGGAGGTTACCGCCGGC+GGG | + | chr1.2:54156103-54156122 | MS.gene50576:CDS | 65.0% | |
| !! | ATCTACCGGCGTGGTGGTGG+TGG | - | chr1.2:54155822-54155841 | None:intergenic | 65.0% |
| !! | CGTGGTGGTGGTGGTTGTGG+TGG | - | chr1.2:54155813-54155832 | None:intergenic | 65.0% |
| AGGGATGGAGGGAGACGGCG+AGG | + | chr1.2:54156152-54156171 | MS.gene50576:CDS | 70.0% | |
| GCTCGCCGGAGATTCGACGG+TGG | - | chr1.2:54155896-54155915 | None:intergenic | 70.0% | |
| GGGAGACGGCGAGGAAGCTG+TGG | + | chr1.2:54156161-54156180 | MS.gene50576:CDS | 70.0% | |
| !! | CGGCGTGGTGGTGGTGGTTG+TGG | - | chr1.2:54155816-54155835 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 54155650 | 54160088 | 54155650 | ID=MS.gene50576 |
| chr1.2 | mRNA | 54155650 | 54160088 | 54155650 | ID=MS.gene50576.t1;Parent=MS.gene50576 |
| chr1.2 | exon | 54155650 | 54156296 | 54155650 | ID=MS.gene50576.t1.exon1;Parent=MS.gene50576.t1 |
| chr1.2 | CDS | 54155650 | 54156296 | 54155650 | ID=cds.MS.gene50576.t1;Parent=MS.gene50576.t1 |
| chr1.2 | exon | 54156677 | 54156778 | 54156677 | ID=MS.gene50576.t1.exon2;Parent=MS.gene50576.t1 |
| chr1.2 | CDS | 54156677 | 54156778 | 54156677 | ID=cds.MS.gene50576.t1;Parent=MS.gene50576.t1 |
| chr1.2 | exon | 54157311 | 54157455 | 54157311 | ID=MS.gene50576.t1.exon3;Parent=MS.gene50576.t1 |
| chr1.2 | CDS | 54157311 | 54157455 | 54157311 | ID=cds.MS.gene50576.t1;Parent=MS.gene50576.t1 |
| chr1.2 | exon | 54157569 | 54157753 | 54157569 | ID=MS.gene50576.t1.exon4;Parent=MS.gene50576.t1 |
| chr1.2 | CDS | 54157569 | 54157753 | 54157569 | ID=cds.MS.gene50576.t1;Parent=MS.gene50576.t1 |
| chr1.2 | exon | 54158305 | 54158409 | 54158305 | ID=MS.gene50576.t1.exon5;Parent=MS.gene50576.t1 |
| chr1.2 | CDS | 54158305 | 54158409 | 54158305 | ID=cds.MS.gene50576.t1;Parent=MS.gene50576.t1 |
| chr1.2 | exon | 54158614 | 54158711 | 54158614 | ID=MS.gene50576.t1.exon6;Parent=MS.gene50576.t1 |
| chr1.2 | CDS | 54158614 | 54158711 | 54158614 | ID=cds.MS.gene50576.t1;Parent=MS.gene50576.t1 |
| chr1.2 | exon | 54158803 | 54159020 | 54158803 | ID=MS.gene50576.t1.exon7;Parent=MS.gene50576.t1 |
| chr1.2 | CDS | 54158803 | 54159020 | 54158803 | ID=cds.MS.gene50576.t1;Parent=MS.gene50576.t1 |
| chr1.2 | exon | 54159112 | 54159178 | 54159112 | ID=MS.gene50576.t1.exon8;Parent=MS.gene50576.t1 |
| chr1.2 | CDS | 54159112 | 54159178 | 54159112 | ID=cds.MS.gene50576.t1;Parent=MS.gene50576.t1 |
| chr1.2 | exon | 54159289 | 54159374 | 54159289 | ID=MS.gene50576.t1.exon9;Parent=MS.gene50576.t1 |
| chr1.2 | CDS | 54159289 | 54159374 | 54159289 | ID=cds.MS.gene50576.t1;Parent=MS.gene50576.t1 |
| chr1.2 | exon | 54159604 | 54159702 | 54159604 | ID=MS.gene50576.t1.exon10;Parent=MS.gene50576.t1 |
| chr1.2 | CDS | 54159604 | 54159702 | 54159604 | ID=cds.MS.gene50576.t1;Parent=MS.gene50576.t1 |
| chr1.2 | exon | 54160023 | 54160088 | 54160023 | ID=MS.gene50576.t1.exon11;Parent=MS.gene50576.t1 |
| chr1.2 | CDS | 54160023 | 54160088 | 54160023 | ID=cds.MS.gene50576.t1;Parent=MS.gene50576.t1 |
| Gene Sequence |
| Protein sequence |
