Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39911.t1 | XP_013468582.1 | 98.4 | 609 | 8 | 1 | 1 | 607 | 1 | 609 | 2.80E-296 | 1027.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39911.t1 | Q8W104 | 54.3 | 608 | 226 | 8 | 18 | 605 | 17 | 592 | 5.6e-168 | 592.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39911.t1 | A0A072VKR1 | 98.4 | 609 | 8 | 1 | 1 | 607 | 1 | 609 | 2.0e-296 | 1027.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049250 | MS.gene39911 | 0.802303 | 5.98E-49 | -1.69E-46 |
MS.gene049251 | MS.gene39911 | 0.842414 | 2.62E-58 | -1.69E-46 |
MS.gene049298 | MS.gene39911 | 0.833323 | 5.70E-56 | -1.69E-46 |
MS.gene049844 | MS.gene39911 | 0.822652 | 2.11E-53 | -1.69E-46 |
MS.gene050577 | MS.gene39911 | -0.80503 | 1.62E-49 | -1.69E-46 |
MS.gene050874 | MS.gene39911 | 0.83994 | 1.17E-57 | -1.69E-46 |
MS.gene050875 | MS.gene39911 | 0.865747 | 4.72E-65 | -1.69E-46 |
MS.gene051025 | MS.gene39911 | 0.814873 | 1.23E-51 | -1.69E-46 |
MS.gene05124 | MS.gene39911 | 0.811556 | 6.60E-51 | -1.69E-46 |
MS.gene051439 | MS.gene39911 | 0.808741 | 2.67E-50 | -1.69E-46 |
MS.gene051838 | MS.gene39911 | -0.820176 | 7.88E-53 | -1.69E-46 |
MS.gene051914 | MS.gene39911 | 0.89239 | 1.66E-74 | -1.69E-46 |
MS.gene052143 | MS.gene39911 | 0.820123 | 8.10E-53 | -1.69E-46 |
MS.gene052169 | MS.gene39911 | 0.814353 | 1.61E-51 | -1.69E-46 |
MS.gene052209 | MS.gene39911 | 0.800362 | 1.49E-48 | -1.69E-46 |
MS.gene052308 | MS.gene39911 | 0.857194 | 1.93E-62 | -1.69E-46 |
MS.gene052367 | MS.gene39911 | 0.809781 | 1.60E-50 | -1.69E-46 |
MS.gene052825 | MS.gene39911 | -0.804119 | 2.52E-49 | -1.69E-46 |
MS.gene053108 | MS.gene39911 | 0.818386 | 2.01E-52 | -1.69E-46 |
MS.gene053173 | MS.gene39911 | 0.862144 | 6.24E-64 | -1.69E-46 |
MS.gene053348 | MS.gene39911 | 0.822334 | 2.50E-53 | -1.69E-46 |
MS.gene054018 | MS.gene39911 | 0.848079 | 7.70E-60 | -1.69E-46 |
MS.gene054459 | MS.gene39911 | 0.811053 | 8.49E-51 | -1.69E-46 |
MS.gene054551 | MS.gene39911 | 0.857973 | 1.13E-62 | -1.69E-46 |
MS.gene054593 | MS.gene39911 | 0.849212 | 3.74E-60 | -1.69E-46 |
MS.gene054633 | MS.gene39911 | 0.883209 | 5.45E-71 | -1.69E-46 |
MS.gene054662 | MS.gene39911 | 0.897014 | 2.12E-76 | -1.69E-46 |
MS.gene054851 | MS.gene39911 | 0.801475 | 8.85E-49 | -1.69E-46 |
MS.gene054941 | MS.gene39911 | 0.832305 | 1.02E-55 | -1.69E-46 |
MS.gene055308 | MS.gene39911 | 0.834191 | 3.46E-56 | -1.69E-46 |
MS.gene055578 | MS.gene39911 | 0.844985 | 5.38E-59 | -1.69E-46 |
MS.gene055616 | MS.gene39911 | 0.830154 | 3.45E-55 | -1.69E-46 |
MS.gene055617 | MS.gene39911 | 0.813504 | 2.48E-51 | -1.69E-46 |
MS.gene055731 | MS.gene39911 | 0.801219 | 9.98E-49 | -1.69E-46 |
MS.gene056041 | MS.gene39911 | 0.816653 | 4.95E-52 | -1.69E-46 |
MS.gene056387 | MS.gene39911 | -0.808354 | 3.23E-50 | -1.69E-46 |
MS.gene05640 | MS.gene39911 | 0.882658 | 8.66E-71 | -1.69E-46 |
MS.gene056528 | MS.gene39911 | 0.802309 | 5.97E-49 | -1.69E-46 |
MS.gene05652 | MS.gene39911 | 0.849415 | 3.28E-60 | -1.69E-46 |
MS.gene056618 | MS.gene39911 | 0.812804 | 3.53E-51 | -1.69E-46 |
MS.gene057101 | MS.gene39911 | 0.808051 | 3.74E-50 | -1.69E-46 |
MS.gene05732 | MS.gene39911 | 0.803518 | 3.36E-49 | -1.69E-46 |
MS.gene057367 | MS.gene39911 | 0.873489 | 1.41E-67 | -1.69E-46 |
MS.gene057458 | MS.gene39911 | 0.825384 | 4.83E-54 | -1.69E-46 |
MS.gene057669 | MS.gene39911 | 0.831596 | 1.53E-55 | -1.69E-46 |
MS.gene057717 | MS.gene39911 | 0.801606 | 8.32E-49 | -1.69E-46 |
MS.gene058128 | MS.gene39911 | 0.863077 | 3.22E-64 | -1.69E-46 |
MS.gene058418 | MS.gene39911 | 0.815856 | 7.46E-52 | -1.69E-46 |
MS.gene058853 | MS.gene39911 | 0.87203 | 4.35E-67 | -1.69E-46 |
MS.gene05926 | MS.gene39911 | 0.843835 | 1.10E-58 | -1.69E-46 |
MS.gene059553 | MS.gene39911 | 0.816269 | 6.03E-52 | -1.69E-46 |
MS.gene05960 | MS.gene39911 | 0.841895 | 3.60E-58 | -1.69E-46 |
MS.gene059616 | MS.gene39911 | 0.842111 | 3.16E-58 | -1.69E-46 |
MS.gene060275 | MS.gene39911 | 0.808565 | 2.91E-50 | -1.69E-46 |
MS.gene060291 | MS.gene39911 | 0.85989 | 3.02E-63 | -1.69E-46 |
MS.gene06080 | MS.gene39911 | 0.839695 | 1.36E-57 | -1.69E-46 |
MS.gene06093 | MS.gene39911 | 0.896925 | 2.31E-76 | -1.69E-46 |
MS.gene061260 | MS.gene39911 | 0.820277 | 7.47E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39911.t1 | MTR_1g070515 | 98.194 | 609 | 9 | 1 | 1 | 607 | 1 | 609 | 0.0 | 1208 |
MS.gene39911.t1 | MTR_1g070515 | 97.326 | 561 | 13 | 1 | 1 | 559 | 1 | 561 | 0.0 | 1098 |
MS.gene39911.t1 | MTR_2g066740 | 80.870 | 115 | 20 | 2 | 119 | 232 | 34 | 147 | 1.14e-53 | 183 |
MS.gene39911.t1 | MTR_0878s0020 | 89.535 | 86 | 9 | 0 | 132 | 217 | 1 | 86 | 9.43e-46 | 157 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39911.t1 | AT3G54650 | 58.696 | 598 | 195 | 9 | 28 | 605 | 27 | 592 | 0.0 | 641 |
Find 151 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGAATGCTTTCTCTTGTTCT+TGG | 0.137595 | 1.4:+57933727 | MS.gene39911:CDS |
ATTGCCACTTCTTGAACTTA+TGG | 0.229544 | 1.4:+57934243 | MS.gene39911:CDS |
AGATTACTTGAGGTCACATT+AGG | 0.296935 | 1.4:-57934111 | None:intergenic |
ATGCCCTAATCTGGAATCTA+TGG | 0.302684 | 1.4:+57932132 | MS.gene39911:CDS |
TCTTGTAGAAATCTGCATTC+AGG | 0.308829 | 1.4:+57934572 | MS.gene39911:CDS |
ATAAGGAACCCGAACCCTTT+TGG | 0.310964 | 1.4:-57935080 | None:intergenic |
TATGCTTGATGATTAGCTTT+TGG | 0.316735 | 1.4:-57934369 | None:intergenic |
ACCTCGCCACTAAGTAAATA+AGG | 0.317400 | 1.4:-57935097 | None:intergenic |
GGAGTTGAAGCTTAGGGTTC+CGG | 0.327873 | 1.4:+57931611 | MS.gene39911:CDS |
CGGCGAGCGCTTTCGTTTGA+CGG | 0.335154 | 1.4:+57931318 | MS.gene39911:CDS |
ACCGCCGGCGGGATTGTTAT+CGG | 0.335562 | 1.4:+57931530 | MS.gene39911:CDS |
GTGGTGGTTGTGGTGGAAAC+TGG | 0.336712 | 1.4:-57931213 | None:intergenic |
ATGGAAGGTTGTTCTAATCT+AGG | 0.345750 | 1.4:+57932778 | MS.gene39911:CDS |
TTCTGTACCGTCTGCGGTCT+CGG | 0.351169 | 1.4:+57931269 | MS.gene39911:CDS |
CTGACTTTGTTACCTGACTT+TGG | 0.352864 | 1.4:-57934780 | None:intergenic |
CGGGTTCCTTATTTACTTAG+TGG | 0.355932 | 1.4:+57935091 | MS.gene39911:CDS |
TTGGAAAATGTTCATGCAAC+AGG | 0.363021 | 1.4:+57934730 | MS.gene39911:CDS |
CATAACTATGATTGAAGGAT+TGG | 0.367458 | 1.4:+57933055 | MS.gene39911:CDS |
CTCTGGGCAGTTTAAGTATA+GGG | 0.378634 | 1.4:-57934528 | None:intergenic |
CGGCGTGGTGGTGGTGGTTG+TGG | 0.382786 | 1.4:-57931223 | None:intergenic |
TCTCCATAGATTCCAGATTA+GGG | 0.385939 | 1.4:-57932135 | None:intergenic |
AGGTCAAGCAACTCTAGATT+TGG | 0.388297 | 1.4:-57933796 | None:intergenic |
TGTTCATGCAACAGGTTGTC+AGG | 0.400235 | 1.4:+57934738 | MS.gene39911:CDS |
CGACGGAGGAGTTGAAGCTT+AGG | 0.401872 | 1.4:+57931604 | MS.gene39911:CDS |
CTGATGGCTCCAAAAGGGTT+CGG | 0.402880 | 1.4:+57935071 | MS.gene39911:CDS |
CTCTTAGTGCTGCTCAATTG+AGG | 0.407117 | 1.4:+57933147 | MS.gene39911:CDS |
AGATTCAGATCATTCAGCTC+TGG | 0.409333 | 1.4:-57934545 | None:intergenic |
GCGGTTGGATCTGGGAAATT+AGG | 0.409772 | 1.4:-57934289 | None:intergenic |
CTCAGTTTGTGGGGTTGCAC+CGG | 0.411998 | 1.4:+57934406 | MS.gene39911:CDS |
GCTCTGGGCAGTTTAAGTAT+AGG | 0.415214 | 1.4:-57934529 | None:intergenic |
AGATGGAGATGGAGATTTGT+TGG | 0.417613 | 1.4:+57931416 | MS.gene39911:CDS |
AGATGGAGATTTGTTGGATC+TGG | 0.419722 | 1.4:+57931422 | MS.gene39911:CDS |
GATTACTTGAGGTCACATTA+GGG | 0.425752 | 1.4:-57934110 | None:intergenic |
AAAGCCGCATTGAAGCTATA+TGG | 0.425901 | 1.4:-57933106 | None:intergenic |
TGATGGCTCCAAAAGGGTTC+GGG | 0.430597 | 1.4:+57935072 | MS.gene39911:CDS |
TTTGAGGCTTTCGCTTAGAA+TGG | 0.430849 | 1.4:+57931686 | MS.gene39911:CDS |
AGGCTTGACGATAAAGCGTT+TGG | 0.431841 | 1.4:+57931375 | MS.gene39911:CDS |
ATCTCCATAGATTCCAGATT+AGG | 0.431846 | 1.4:-57932136 | None:intergenic |
ACCGCAACCAATCGGATCAA+TGG | 0.439840 | 1.4:+57932172 | MS.gene39911:CDS |
CCATCAGGTAGACGTTTAGA+AGG | 0.443237 | 1.4:-57935055 | None:intergenic |
ATCGGCGGCGAAGGTGTGTA+AGG | 0.445828 | 1.4:+57931548 | MS.gene39911:CDS |
GGCATAAGTGACAGTGGCAT+TGG | 0.453603 | 1.4:+57934033 | MS.gene39911:CDS |
CCCATTGATCCGATTGGTTG+CGG | 0.458118 | 1.4:-57932173 | None:intergenic |
ATTGATTCGAGCGGTTTGCC+TGG | 0.459369 | 1.4:+57931477 | MS.gene39911:CDS |
CATCTAGTTTGTCTACACTT+TGG | 0.463348 | 1.4:+57932818 | MS.gene39911:CDS |
GTCAACCACCGTCGAATCTC+CGG | 0.463535 | 1.4:+57931298 | MS.gene39911:CDS |
GTTGCTTCAGTGCCCCACTT+TGG | 0.468923 | 1.4:+57934711 | MS.gene39911:CDS |
TGGAAGGTTGTTCTAATCTA+GGG | 0.472778 | 1.4:+57932779 | MS.gene39911:CDS |
GACCTCATAACTATGATTGA+AGG | 0.473186 | 1.4:+57933050 | MS.gene39911:CDS |
ATAACTATGATTGAAGGATT+GGG | 0.473642 | 1.4:+57933056 | MS.gene39911:CDS |
GTCTACCTGATGGCTCCAAA+AGG | 0.478330 | 1.4:+57935065 | MS.gene39911:CDS |
CCGCAACCAATCGGATCAAT+GGG | 0.483382 | 1.4:+57932173 | MS.gene39911:CDS |
GATTCAGATCATTCAGCTCT+GGG | 0.484073 | 1.4:-57934544 | None:intergenic |
TCAATCTCCACATCTAGATC+TGG | 0.486325 | 1.4:-57931459 | None:intergenic |
TCTAAAGAAACTCAGTTTGT+GGG | 0.488471 | 1.4:+57934396 | MS.gene39911:CDS |
GAAGCTTAGGGTTCCGGTGA+AGG | 0.494599 | 1.4:+57931617 | MS.gene39911:CDS |
TTTCGTCAGCGGTTGGATCT+GGG | 0.495746 | 1.4:-57934297 | None:intergenic |
TTTGTGGGGTTGCACCGGCT+TGG | 0.495778 | 1.4:+57934411 | MS.gene39911:CDS |
CGTGGTGGTGGTGGTTGTGG+TGG | 0.497371 | 1.4:-57931220 | None:intergenic |
CGAAGGTGTGTAAGGGATGG+AGG | 0.497940 | 1.4:+57931556 | MS.gene39911:CDS |
GGCGAATGGTTATCTATAGC+AGG | 0.505677 | 1.4:-57935034 | None:intergenic |
GCCTGGGAATTTACGATGGG+AGG | 0.506430 | 1.4:+57931494 | MS.gene39911:CDS |
ATCTACCGGCGTGGTGGTGG+TGG | 0.506650 | 1.4:-57931229 | None:intergenic |
GGGATTGTTATCGGCGGCGA+AGG | 0.511793 | 1.4:+57931539 | MS.gene39911:CDS |
GGTCTTGACGATCGAGGCAC+TGG | 0.513418 | 1.4:+57931339 | MS.gene39911:CDS |
TGAATCTACCGGCGTGGTGG+TGG | 0.515249 | 1.4:-57931232 | None:intergenic |
CATAGTTATGAGGTCAGTGC+TGG | 0.516035 | 1.4:-57933042 | None:intergenic |
TCGATGCTGCAGAAATGTCC+TGG | 0.517320 | 1.4:+57931660 | MS.gene39911:CDS |
GACGGAGGAGTTGAAGCTTA+GGG | 0.522111 | 1.4:+57931605 | MS.gene39911:CDS |
TTGATTCGAGCGGTTTGCCT+GGG | 0.522215 | 1.4:+57931478 | MS.gene39911:CDS |
TATATGCTGTAGATTTGCAC+TGG | 0.525532 | 1.4:-57934344 | None:intergenic |
AGTCGAGGCTATCCAAAGTC+AGG | 0.528185 | 1.4:+57934768 | MS.gene39911:CDS |
TTGAGGAGGTTACCGCCGGC+GGG | 0.528416 | 1.4:+57931519 | MS.gene39911:CDS |
ACCTCCCATCGTAAATTCCC+AGG | 0.528720 | 1.4:-57931495 | None:intergenic |
ACAAACTGAGTTTCTTTAGA+CGG | 0.530553 | 1.4:-57934393 | None:intergenic |
GTCTAAAGAAACTCAGTTTG+TGG | 0.530730 | 1.4:+57934395 | MS.gene39911:CDS |
TTTGGTGATGGTGATGGAGA+TGG | 0.530866 | 1.4:+57931393 | MS.gene39911:CDS |
TCTTTGACACCGCAACCAAT+CGG | 0.534722 | 1.4:+57932164 | MS.gene39911:CDS |
TGGGAAATTAGGATCACATA+TGG | 0.540618 | 1.4:-57934278 | None:intergenic |
CACAACCACCACCACCACGC+CGG | 0.541400 | 1.4:+57931224 | MS.gene39911:CDS |
ATCCTTCAATCATAGTTATG+AGG | 0.542576 | 1.4:-57933052 | None:intergenic |
AAATCTCAAAAGCCTCAAGA+TGG | 0.542982 | 1.4:+57932759 | MS.gene39911:CDS |
TGATAATGCAGGGATGAACT+AGG | 0.544759 | 1.4:+57932715 | MS.gene39911:intron |
GGGAGACGGCGAGGAAGCTG+TGG | 0.544858 | 1.4:+57931577 | MS.gene39911:CDS |
AATCCAACATGAACCTTCAC+CGG | 0.547681 | 1.4:-57931630 | None:intergenic |
GTGTAAGGGATGGAGGGAGA+CGG | 0.554978 | 1.4:+57931563 | MS.gene39911:CDS |
TTTGAGGAGGTTACCGCCGG+CGG | 0.555516 | 1.4:+57931518 | MS.gene39911:CDS |
AGCGCTCGCCGGAGATTCGA+CGG | 0.559630 | 1.4:-57931306 | None:intergenic |
AGCGAAAGCCTCAAAATCCC+AGG | 0.560281 | 1.4:-57931678 | None:intergenic |
TAGAACAACCTTCCATCTTG+AGG | 0.561903 | 1.4:-57932771 | None:intergenic |
GGCTTTCGCTTAGAATGGAA+AGG | 0.562043 | 1.4:+57931691 | MS.gene39911:CDS |
TTTGCCTGGGAATTTACGAT+GGG | 0.562437 | 1.4:+57931491 | MS.gene39911:CDS |
GATGGAGATGGAGATGGAGA+TGG | 0.562789 | 1.4:+57931405 | MS.gene39911:CDS |
GCACTGGACTTGATCTGTTG+AGG | 0.563835 | 1.4:+57931355 | MS.gene39911:CDS |
GACGATAAAGCGTTTGGTGA+TGG | 0.566160 | 1.4:+57931381 | MS.gene39911:CDS |
TCTACCTGATGGCTCCAAAA+GGG | 0.566567 | 1.4:+57935066 | MS.gene39911:CDS |
CTCTAGATTTGGATAGCTTG+AGG | 0.571915 | 1.4:-57933785 | None:intergenic |
CTCAAAAGCCTCAAGATGGA+AGG | 0.571984 | 1.4:+57932763 | MS.gene39911:CDS |
CGATGCTGCAGAAATGTCCT+GGG | 0.572129 | 1.4:+57931661 | MS.gene39911:CDS |
CGTCAAACGAAAGCGCTCGC+CGG | 0.573225 | 1.4:-57931317 | None:intergenic |
TTGTCAGGATTTGTTAGTCG+AGG | 0.573290 | 1.4:+57934753 | MS.gene39911:CDS |
TAGAGTTGCTTGACCTCAGT+GGG | 0.573574 | 1.4:+57933803 | MS.gene39911:CDS |
CCTTCTAAACGTCTACCTGA+TGG | 0.573862 | 1.4:+57935055 | MS.gene39911:CDS |
TCCTTATTTACTTAGTGGCG+AGG | 0.573887 | 1.4:+57935096 | MS.gene39911:CDS |
TCTGCACTCTCTGTCTAAGA+TGG | 0.574052 | 1.4:+57932849 | MS.gene39911:CDS |
TCACATTAGGGCAAAGAGCA+AGG | 0.574084 | 1.4:-57934098 | None:intergenic |
GATGGTGATGGAGATGGAGA+TGG | 0.574313 | 1.4:+57931399 | MS.gene39911:CDS |
GTAATACCCATTGATCCGAT+TGG | 0.575015 | 1.4:-57932179 | None:intergenic |
CGGCGAAGGTGTGTAAGGGA+TGG | 0.576084 | 1.4:+57931553 | MS.gene39911:CDS |
AAAGCGTTTGGTGATGGTGA+TGG | 0.580418 | 1.4:+57931387 | MS.gene39911:CDS |
GAAGGTGTGTAAGGGATGGA+GGG | 0.586174 | 1.4:+57931557 | MS.gene39911:CDS |
CGATGAATCTACCGGCGTGG+TGG | 0.586581 | 1.4:-57931235 | None:intergenic |
GTTCCGGTGAAGGTTCATGT+TGG | 0.588296 | 1.4:+57931627 | MS.gene39911:CDS |
GTTTGCCTGGGAATTTACGA+TGG | 0.594948 | 1.4:+57931490 | MS.gene39911:CDS |
TATCGTTTCTGTACCGTCTG+CGG | 0.597284 | 1.4:+57931263 | MS.gene39911:CDS |
CAGTCCATAAGTTCAAGAAG+TGG | 0.599028 | 1.4:-57934247 | None:intergenic |
ACTTCCGTGTAATGTGCTTG+TGG | 0.602265 | 1.4:+57935476 | MS.gene39911:CDS |
CCAACCGCTGACGAAAATAA+CGG | 0.604163 | 1.4:+57934304 | MS.gene39911:CDS |
AAACGTGGTAGTTACAATTG+TGG | 0.606563 | 1.4:+57931144 | MS.gene39911:CDS |
AGGGATGGAGGGAGACGGCG+AGG | 0.611493 | 1.4:+57931568 | MS.gene39911:CDS |
GCCGCGTCGCAATCTTCACG+CGG | 0.616141 | 1.4:+57931081 | MS.gene39911:CDS |
CGAATCACCGAGACCGCAGA+CGG | 0.619376 | 1.4:-57931276 | None:intergenic |
ATTGAAACTCACATCCAAGC+CGG | 0.620954 | 1.4:-57934425 | None:intergenic |
CAGTCCACAAGCACATTACA+CGG | 0.620998 | 1.4:-57935480 | None:intergenic |
GCCGATAACAATCCCGCCGG+CGG | 0.621466 | 1.4:-57931531 | None:intergenic |
TCGGCGGCGAAGGTGTGTAA+GGG | 0.627171 | 1.4:+57931549 | MS.gene39911:CDS |
GAGGAAGCTGTGGAAAGCGA+CGG | 0.628768 | 1.4:+57931587 | MS.gene39911:CDS |
CTAAAGAAACTCAGTTTGTG+GGG | 0.628993 | 1.4:+57934397 | MS.gene39911:CDS |
GCCGCCGATAACAATCCCGC+CGG | 0.629360 | 1.4:-57931534 | None:intergenic |
GCGTGAAGATTGCGACGCGG+CGG | 0.630010 | 1.4:-57931079 | None:intergenic |
GGAAGGTTGTTCTAATCTAG+GGG | 0.635613 | 1.4:+57932780 | MS.gene39911:CDS |
AGTTACAATTGTGGACGTTG+TGG | 0.636586 | 1.4:+57931153 | MS.gene39911:CDS |
TAGACAAACTAGATGAAGAG+AGG | 0.636819 | 1.4:-57932810 | None:intergenic |
GTAGACGTTTAGAAGGCGAA+TGG | 0.637230 | 1.4:-57935048 | None:intergenic |
TCTAGAACCAGATCTAGATG+TGG | 0.637574 | 1.4:+57931452 | MS.gene39911:CDS |
CTTCTTGAACTTATGGACTG+TGG | 0.641932 | 1.4:+57934250 | MS.gene39911:CDS |
ATAGATAACGATGAATCTAC+CGG | 0.642583 | 1.4:-57931243 | None:intergenic |
AGTGAAATCTCTCTCAGCTG+CGG | 0.645007 | 1.4:-57932996 | None:intergenic |
CTAGAGTTGCTTGACCTCAG+TGG | 0.647313 | 1.4:+57933802 | MS.gene39911:CDS |
GAAGCTGTGGAAAGCGACGG+AGG | 0.650091 | 1.4:+57931590 | MS.gene39911:CDS |
GAAGGTTGTTCTAATCTAGG+GGG | 0.651856 | 1.4:+57932781 | MS.gene39911:CDS |
TTTGACGGTCTTGACGATCG+AGG | 0.668066 | 1.4:+57931333 | MS.gene39911:CDS |
GCCGGCGGGATTGTTATCGG+CGG | 0.681604 | 1.4:+57931533 | MS.gene39911:CDS |
AGATCTGGCATAAGTGACAG+TGG | 0.684251 | 1.4:+57934027 | MS.gene39911:intron |
GCCGCGTGAAGATTGCGACG+CGG | 0.689777 | 1.4:-57931082 | None:intergenic |
GCGTCGCAATCTTCACGCGG+CGG | 0.696177 | 1.4:+57931084 | MS.gene39911:CDS |
TAACGATGAATCTACCGGCG+TGG | 0.708007 | 1.4:-57931238 | None:intergenic |
GCTCGCCGGAGATTCGACGG+TGG | 0.736622 | 1.4:-57931303 | None:intergenic |
GATGTGGAGATTGATTCGAG+CGG | 0.746668 | 1.4:+57931468 | MS.gene39911:CDS |
ACATCCATATAGCTTCAATG+CGG | 0.786151 | 1.4:+57933102 | MS.gene39911:CDS |
GTACAGATTCATACCCACTG+AGG | 0.831236 | 1.4:-57933816 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTATTAATTAATTGGTT+TGG | + | chr1.4:57931895-57931914 | MS.gene39911:intron | 10.0% |
!! | ATCTCAATTTATTAATTAAT+TGG | + | chr1.4:57931890-57931909 | MS.gene39911:intron | 10.0% |
!!! | GATTATTTTCATTTATTAAT+TGG | + | chr1.4:57934676-57934695 | MS.gene39911:intron | 10.0% |
!! | AATACACACTAATAAAAATT+AGG | + | chr1.4:57933466-57933485 | MS.gene39911:intron | 15.0% |
!! | AATCAATCATACAATTTAAA+AGG | - | chr1.4:57934660-57934679 | None:intergenic | 15.0% |
!! | CTAATTTAATCATGAATTAA+TGG | + | chr1.4:57931774-57931793 | MS.gene39911:intron | 15.0% |
!! | CTTTGATTATAATTTATCTA+TGG | - | chr1.4:57933915-57933934 | None:intergenic | 15.0% |
!! | TAAAAAAGAATATGCATTAA+TGG | - | chr1.4:57934467-57934486 | None:intergenic | 15.0% |
!! | TTTCACATTCAAAATAAAAT+CGG | - | chr1.4:57935379-57935398 | None:intergenic | 15.0% |
!!! | ATTAATGCATATTCTTTTTT+AGG | + | chr1.4:57934466-57934485 | MS.gene39911:intron | 15.0% |
!! | AAAACATATTGTGTTTATCT+AGG | + | chr1.4:57935153-57935172 | MS.gene39911:intron | 20.0% |
!! | AAAAGGATGATGAAAAAAAT+TGG | + | chr1.4:57931922-57931941 | MS.gene39911:intron | 20.0% |
!! | AATTAATCTTATTCTTAACG+TGG | - | chr1.4:57931734-57931753 | None:intergenic | 20.0% |
!! | ACAATAAATTGCCAAATAAA+AGG | - | chr1.4:57933177-57933196 | None:intergenic | 20.0% |
!! | AGCATTGTAGTTAAAATAAT+TGG | - | chr1.4:57933439-57933458 | None:intergenic | 20.0% |
!! | TCCAAATATACAATTAATCA+GGG | + | chr1.4:57933699-57933718 | MS.gene39911:intron | 20.0% |
!! | TTTAAGAAATCAAGTTTGAT+GGG | + | chr1.4:57933991-57934010 | MS.gene39911:intron | 20.0% |
!!! | AAGAAAAATTGGATTTTCTA+GGG | + | chr1.4:57935307-57935326 | MS.gene39911:intron | 20.0% |
!!! | TTAATTGGTTTGGTTATAAA+AGG | + | chr1.4:57931905-57931924 | MS.gene39911:intron | 20.0% |
!!! | TTATTTGATAGTTACAAAAC+AGG | - | chr1.4:57934614-57934633 | None:intergenic | 20.0% |
!!! | TTCTTTTCAAAATTATTTGC+AGG | + | chr1.4:57934505-57934524 | MS.gene39911:intron | 20.0% |
!!! | TTTCTTTCCTTTTTTTGTAT+CGG | - | chr1.4:57931127-57931146 | None:intergenic | 20.0% |
!!! | TTTTTAAAATGTATTTGCCT+TGG | + | chr1.4:57933860-57933879 | MS.gene39911:intron | 20.0% |
! | AAAGTAAGTTTGTGTATCAA+TGG | + | chr1.4:57935229-57935248 | MS.gene39911:intron | 25.0% |
! | ACATTATTAGCATATATGCA+TGG | + | chr1.4:57932640-57932659 | MS.gene39911:intron | 25.0% |
! | ATAACTATGATTGAAGGATT+GGG | + | chr1.4:57933056-57933075 | MS.gene39911:CDS | 25.0% |
! | ATATATTTATCCGAAACTCA+TGG | + | chr1.4:57933567-57933586 | MS.gene39911:intron | 25.0% |
! | ATTAATATCTTCAACTGAGT+GGG | - | chr1.4:57933670-57933689 | None:intergenic | 25.0% |
! | CAAAGTTACAATCTATAACA+TGG | - | chr1.4:57932489-57932508 | None:intergenic | 25.0% |
! | CAAATATACAATTAATCAGG+GGG | + | chr1.4:57933701-57933720 | MS.gene39911:intron | 25.0% |
! | CCAAATATACAATTAATCAG+GGG | + | chr1.4:57933700-57933719 | MS.gene39911:intron | 25.0% |
! | GTCCAAATATACAATTAATC+AGG | + | chr1.4:57933698-57933717 | MS.gene39911:intron | 25.0% |
! | GTTTAAGAAATCAAGTTTGA+TGG | + | chr1.4:57933990-57934009 | MS.gene39911:intron | 25.0% |
! | GTTTGTTTGATATTTATTCC+AGG | + | chr1.4:57934951-57934970 | MS.gene39911:intron | 25.0% |
! | TCTAAGTATGCAATTAATGT+TGG | + | chr1.4:57932279-57932298 | MS.gene39911:intron | 25.0% |
! | TGATTTCTTAAACAAAGACA+TGG | - | chr1.4:57933983-57934002 | None:intergenic | 25.0% |
!! | AAAATCCAATTTTTCTTCTG+TGG | - | chr1.4:57935304-57935323 | None:intergenic | 25.0% |
!! | AACCAATGCTTTTAAATTGT+AGG | + | chr1.4:57932962-57932981 | MS.gene39911:intron | 25.0% |
!! | ATATTGTGTTTATCTAGGAT+GGG | + | chr1.4:57935158-57935177 | MS.gene39911:intron | 25.0% |
!! | ATTTATTAATTGGTTCAGAG+AGG | + | chr1.4:57934686-57934705 | MS.gene39911:intron | 25.0% |
!! | CTACAAACTTTTATAACAGA+TGG | - | chr1.4:57933244-57933263 | None:intergenic | 25.0% |
!! | GAAGAAAAATTGGATTTTCT+AGG | + | chr1.4:57935306-57935325 | MS.gene39911:intron | 25.0% |
!! | TACCTACAATTTAAAAGCAT+TGG | - | chr1.4:57932967-57932986 | None:intergenic | 25.0% |
!! | TTCTATGTGTAATGAGTTTT+CGG | + | chr1.4:57932246-57932265 | MS.gene39911:intron | 25.0% |
!! | TTTTATACAATGTGAAAGTG+AGG | + | chr1.4:57932313-57932332 | MS.gene39911:intron | 25.0% |
!!! | ATCCTTTATGATTTGTTTGT+AGG | + | chr1.4:57934997-57935016 | MS.gene39911:intron | 25.0% |
!!! | ATTACAGTTATGTCCTTTTT+TGG | - | chr1.4:57931184-57931203 | None:intergenic | 25.0% |
!!! | GGATATTTTAAATTAGAACC+AGG | - | chr1.4:57934981-57935000 | None:intergenic | 25.0% |
!!! | TGAGTTTTGTGAAATAATTG+AGG | - | chr1.4:57934147-57934166 | None:intergenic | 25.0% |
!!! | TTACAGTTATGTCCTTTTTT+GGG | - | chr1.4:57931183-57931202 | None:intergenic | 25.0% |
ACAAAAAAAGGAAAGAAACG+TGG | + | chr1.4:57931129-57931148 | MS.gene39911:CDS | 30.0% | |
ACAAACTGAGTTTCTTTAGA+CGG | - | chr1.4:57934396-57934415 | None:intergenic | 30.0% | |
ACATAGAAGCAGCAAAAAAA+AGG | - | chr1.4:57932234-57932253 | None:intergenic | 30.0% | |
ACTTCAACGTCAATAAGAAT+CGG | - | chr1.4:57933841-57933860 | None:intergenic | 30.0% | |
AGATCGATGCACAAAAAAAT+AGG | + | chr1.4:57931857-57931876 | MS.gene39911:intron | 30.0% | |
ATAGATAACGATGAATCTAC+CGG | - | chr1.4:57931246-57931265 | None:intergenic | 30.0% | |
ATCCTTCAATCATAGTTATG+AGG | - | chr1.4:57933055-57933074 | None:intergenic | 30.0% | |
ATGCAGAGAAAATTAGTTCA+AGG | - | chr1.4:57934907-57934926 | None:intergenic | 30.0% | |
ATGTGACAAAAGATTACTTG+AGG | - | chr1.4:57934124-57934143 | None:intergenic | 30.0% | |
ATTTCGGATACTCATAACTT+TGG | - | chr1.4:57933517-57933536 | None:intergenic | 30.0% | |
CAGTTAAAAGATCGGAATTT+CGG | - | chr1.4:57933533-57933552 | None:intergenic | 30.0% | |
CATAACTATGATTGAAGGAT+TGG | + | chr1.4:57933055-57933074 | MS.gene39911:CDS | 30.0% | |
CATAGAAGCAGCAAAAAAAA+GGG | - | chr1.4:57932233-57932252 | None:intergenic | 30.0% | |
CATATTGTGTTTATCTAGGA+TGG | + | chr1.4:57935157-57935176 | MS.gene39911:intron | 30.0% | |
CATTAATATCTTCAACTGAG+TGG | - | chr1.4:57933671-57933690 | None:intergenic | 30.0% | |
CATTGTAAAAGACCAAACAT+AGG | + | chr1.4:57933357-57933376 | MS.gene39911:intron | 30.0% | |
CCAATTAATAATGCCAAACA+CGG | - | chr1.4:57932404-57932423 | None:intergenic | 30.0% | |
CCCCTGATTAATTGTATATT+TGG | - | chr1.4:57933703-57933722 | None:intergenic | 30.0% | |
CTGAAATTTAAATCTTCCGT+GGG | - | chr1.4:57932545-57932564 | None:intergenic | 30.0% | |
GACCTACAAACAAATCATAA+AGG | - | chr1.4:57935002-57935021 | None:intergenic | 30.0% | |
GATTTCATCCATTTACATCA+TGG | - | chr1.4:57932452-57932471 | None:intergenic | 30.0% | |
TACAATTTAAAAGGAAGTCC+TGG | - | chr1.4:57934651-57934670 | None:intergenic | 30.0% | |
TAGTCCAACAGTTAAAAGAT+CGG | - | chr1.4:57933541-57933560 | None:intergenic | 30.0% | |
TCAATATGAATGCAATCTCA+TGG | - | chr1.4:57932930-57932949 | None:intergenic | 30.0% | |
TCTAAAGAAACTCAGTTTGT+GGG | + | chr1.4:57934396-57934415 | MS.gene39911:CDS | 30.0% | |
TGCAGAGAAAATTAGTTCAA+GGG | - | chr1.4:57934906-57934925 | None:intergenic | 30.0% | |
TTACAAAACAGGAACATGAA+GGG | - | chr1.4:57934603-57934622 | None:intergenic | 30.0% | |
TTCAAATGCCATGATGTAAA+TGG | + | chr1.4:57932441-57932460 | MS.gene39911:intron | 30.0% | |
TTTCGGATACTCATAACTTT+GGG | - | chr1.4:57933516-57933535 | None:intergenic | 30.0% | |
! | ATAGATTTTAGATCCGTGTT+TGG | + | chr1.4:57932388-57932407 | MS.gene39911:intron | 30.0% |
! | ATGTTCAACTATGATAATGC+AGG | + | chr1.4:57932704-57932723 | MS.gene39911:intron | 30.0% |
! | ATTGAGGTTTGCCTTTTATT+TGG | + | chr1.4:57933163-57933182 | MS.gene39911:intron | 30.0% |
! | GTCTGTTTTCATGTTGTTAT+TGG | + | chr1.4:57933195-57933214 | MS.gene39911:intron | 30.0% |
! | TCTGAAATTTAAATCTTCCG+TGG | - | chr1.4:57932546-57932565 | None:intergenic | 30.0% |
! | TGTTCAACTATGATAATGCA+GGG | + | chr1.4:57932705-57932724 | MS.gene39911:intron | 30.0% |
! | TTCTTTTGTCAGCAACAAAT+CGG | - | chr1.4:57932741-57932760 | None:intergenic | 30.0% |
!! | AATTCCGATCTTTTAACTGT+TGG | + | chr1.4:57933534-57933553 | MS.gene39911:intron | 30.0% |
!! | AGAAGTCTTTTAAGTGTTTC+AGG | - | chr1.4:57934078-57934097 | None:intergenic | 30.0% |
!! | ATAATTTGTTGCAACTTACC+AGG | + | chr1.4:57934630-57934649 | MS.gene39911:intron | 30.0% |
!! | CTATGTTTGGTCTTTTACAA+TGG | - | chr1.4:57933359-57933378 | None:intergenic | 30.0% |
!! | GAAGTCTTTTAAGTGTTTCA+GGG | - | chr1.4:57934077-57934096 | None:intergenic | 30.0% |
!! | TCTTTTAACTGTTGGACTAA+AGG | + | chr1.4:57933542-57933561 | MS.gene39911:intron | 30.0% |
!!! | TATGCTTGATGATTAGCTTT+TGG | - | chr1.4:57934372-57934391 | None:intergenic | 30.0% |
!!! | TTTTTTTGTATCGGAGCTTT+CGG | - | chr1.4:57931118-57931137 | None:intergenic | 30.0% |
AAACGTGGTAGTTACAATTG+TGG | + | chr1.4:57931144-57931163 | MS.gene39911:CDS | 35.0% | |
AAATCTCAAAAGCCTCAAGA+TGG | + | chr1.4:57932759-57932778 | MS.gene39911:CDS | 35.0% | |
ACATCCATATAGCTTCAATG+CGG | + | chr1.4:57933102-57933121 | MS.gene39911:CDS | 35.0% | |
AGATTACTTGAGGTCACATT+AGG | - | chr1.4:57934114-57934133 | None:intergenic | 35.0% | |
ATATTTATTCCAGGCTTTCC+TGG | + | chr1.4:57934960-57934979 | MS.gene39911:intron | 35.0% | |
ATCTCCATAGATTCCAGATT+AGG | - | chr1.4:57932139-57932158 | None:intergenic | 35.0% | |
ATGGAAGGTTGTTCTAATCT+AGG | + | chr1.4:57932778-57932797 | MS.gene39911:CDS | 35.0% | |
ATTATGCACACCATGAGTTT+CGG | - | chr1.4:57933580-57933599 | None:intergenic | 35.0% | |
ATTCGACATGATCCTATGTT+TGG | - | chr1.4:57933372-57933391 | None:intergenic | 35.0% | |
CACTGCAACATGAAACAAAT+CGG | - | chr1.4:57932075-57932094 | None:intergenic | 35.0% | |
CCGTGTTTGGCATTATTAAT+TGG | + | chr1.4:57932401-57932420 | MS.gene39911:intron | 35.0% | |
CTAAAGAAACTCAGTTTGTG+GGG | + | chr1.4:57934397-57934416 | MS.gene39911:CDS | 35.0% | |
CTATAGCAGGAAAAACATTG+CGG | - | chr1.4:57935024-57935043 | None:intergenic | 35.0% | |
GAAAGCTCCGATACAAAAAA+AGG | + | chr1.4:57931117-57931136 | MS.gene39911:CDS | 35.0% | |
GAACACTACTGAAACAAGAA+AGG | - | chr1.4:57934811-57934830 | None:intergenic | 35.0% | |
GACCTCATAACTATGATTGA+AGG | + | chr1.4:57933050-57933069 | MS.gene39911:CDS | 35.0% | |
GATTACTTGAGGTCACATTA+GGG | - | chr1.4:57934113-57934132 | None:intergenic | 35.0% | |
GTAAATGGATGAAATCCTGA+TGG | + | chr1.4:57932456-57932475 | MS.gene39911:intron | 35.0% | |
GTCTAAAGAAACTCAGTTTG+TGG | + | chr1.4:57934395-57934414 | MS.gene39911:CDS | 35.0% | |
GTTACAAAACAGGAACATGA+AGG | - | chr1.4:57934604-57934623 | None:intergenic | 35.0% | |
TACAAAACAGGAACATGAAG+GGG | - | chr1.4:57934602-57934621 | None:intergenic | 35.0% | |
TAGACAAACTAGATGAAGAG+AGG | - | chr1.4:57932813-57932832 | None:intergenic | 35.0% | |
TATATGCTGTAGATTTGCAC+TGG | - | chr1.4:57934347-57934366 | None:intergenic | 35.0% | |
TCTCCATAGATTCCAGATTA+GGG | - | chr1.4:57932138-57932157 | None:intergenic | 35.0% | |
TCTTATTCTTAACGTGGATC+TGG | - | chr1.4:57931728-57931747 | None:intergenic | 35.0% | |
TCTTGTAGAAATCTGCATTC+AGG | + | chr1.4:57934572-57934591 | MS.gene39911:CDS | 35.0% | |
TGGAAGGTTGTTCTAATCTA+GGG | + | chr1.4:57932779-57932798 | MS.gene39911:CDS | 35.0% | |
TGGGAAATTAGGATCACATA+TGG | - | chr1.4:57934281-57934300 | None:intergenic | 35.0% | |
TTGGAAAATGTTCATGCAAC+AGG | + | chr1.4:57934730-57934749 | MS.gene39911:CDS | 35.0% | |
! | ATCCAATTTTTCTTCTGTGG+AGG | - | chr1.4:57935301-57935320 | None:intergenic | 35.0% |
! | ATTGCCACTTCTTGAACTTA+TGG | + | chr1.4:57934243-57934262 | MS.gene39911:CDS | 35.0% |
! | CATCTAGTTTGTCTACACTT+TGG | + | chr1.4:57932818-57932837 | MS.gene39911:CDS | 35.0% |
! | CATGAACATTTTCCAAAGTG+GGG | - | chr1.4:57934726-57934745 | None:intergenic | 35.0% |
! | GCATGAACATTTTCCAAAGT+GGG | - | chr1.4:57934727-57934746 | None:intergenic | 35.0% |
! | TGCATGAACATTTTCCAAAG+TGG | - | chr1.4:57934728-57934747 | None:intergenic | 35.0% |
!! | AAAAGCATTGGTTAGCAACT+AGG | - | chr1.4:57932955-57932974 | None:intergenic | 35.0% |
!! | GTTTGGTCTTTTACAATGGT+TGG | - | chr1.4:57933355-57933374 | None:intergenic | 35.0% |
!! | TTTTCCGTTATTTTCGTCAG+CGG | - | chr1.4:57934311-57934330 | None:intergenic | 35.0% |
!!! | AGTTATGTCCTTTTTTGGGA+AGG | - | chr1.4:57931179-57931198 | None:intergenic | 35.0% |
!!! | TGATTTTGATTCAACGATGC+TGG | + | chr1.4:57932093-57932112 | MS.gene39911:CDS | 35.0% |
!!! | TTCGCTTTTTTTCAGGTTCA+GGG | - | chr1.4:57935443-57935462 | None:intergenic | 35.0% |
AAAGCCGCATTGAAGCTATA+TGG | - | chr1.4:57933109-57933128 | None:intergenic | 40.0% | |
AAATTAGAACCAGGAAAGCC+TGG | - | chr1.4:57934972-57934991 | None:intergenic | 40.0% | |
AACCTGAAAAAAAGCGAAGG+AGG | + | chr1.4:57935445-57935464 | MS.gene39911:CDS | 40.0% | |
AATCCAACATGAACCTTCAC+CGG | - | chr1.4:57931633-57931652 | None:intergenic | 40.0% | |
AATCTGCTCTCACATGTTTC+AGG | + | chr1.4:57934196-57934215 | MS.gene39911:intron | 40.0% | |
ACCTCGCCACTAAGTAAATA+AGG | - | chr1.4:57935100-57935119 | None:intergenic | 40.0% | |
AGATGGAATTGCAACACATG+TGG | - | chr1.4:57933227-57933246 | None:intergenic | 40.0% | |
AGATGGAGATGGAGATTTGT+TGG | + | chr1.4:57931416-57931435 | MS.gene39911:CDS | 40.0% | |
AGATTCAGATCATTCAGCTC+TGG | - | chr1.4:57934548-57934567 | None:intergenic | 40.0% | |
AGCCTCCACAGAAGAAAAAT+TGG | + | chr1.4:57935296-57935315 | MS.gene39911:intron | 40.0% | |
AGGTCAAGCAACTCTAGATT+TGG | - | chr1.4:57933799-57933818 | None:intergenic | 40.0% | |
AGTTACAATTGTGGACGTTG+TGG | + | chr1.4:57931153-57931172 | MS.gene39911:CDS | 40.0% | |
ATTGAAACTCACATCCAAGC+CGG | - | chr1.4:57934428-57934447 | None:intergenic | 40.0% | |
CAAAGTCAGGTAACAAAGTC+AGG | + | chr1.4:57934781-57934800 | MS.gene39911:intron | 40.0% | |
CAGTCCATAAGTTCAAGAAG+TGG | - | chr1.4:57934250-57934269 | None:intergenic | 40.0% | |
CGAATGCTTTCTCTTGTTCT+TGG | + | chr1.4:57933727-57933746 | MS.gene39911:CDS | 40.0% | |
CTCTAGATTTGGATAGCTTG+AGG | - | chr1.4:57933788-57933807 | None:intergenic | 40.0% | |
CTCTGGGCAGTTTAAGTATA+GGG | - | chr1.4:57934531-57934550 | None:intergenic | 40.0% | |
CTGAACCTGAAAAAAAGCGA+AGG | + | chr1.4:57935442-57935461 | MS.gene39911:CDS | 40.0% | |
CTGACTTTGTTACCTGACTT+TGG | - | chr1.4:57934783-57934802 | None:intergenic | 40.0% | |
GAAGGTTGTTCTAATCTAGG+GGG | + | chr1.4:57932781-57932800 | MS.gene39911:CDS | 40.0% | |
GATTCAGATCATTCAGCTCT+GGG | - | chr1.4:57934547-57934566 | None:intergenic | 40.0% | |
GGAAGGTTGTTCTAATCTAG+GGG | + | chr1.4:57932780-57932799 | MS.gene39911:CDS | 40.0% | |
GTAATACCCATTGATCCGAT+TGG | - | chr1.4:57932182-57932201 | None:intergenic | 40.0% | |
TAACATGGCAATACACCATC+AGG | - | chr1.4:57932474-57932493 | None:intergenic | 40.0% | |
TAGAACAACCTTCCATCTTG+AGG | - | chr1.4:57932774-57932793 | None:intergenic | 40.0% | |
TATTTCACAGACACCGCATT+TGG | - | chr1.4:57933408-57933427 | None:intergenic | 40.0% | |
TCAATCTCCACATCTAGATC+TGG | - | chr1.4:57931462-57931481 | None:intergenic | 40.0% | |
TGTGTCTTTACTGTGTGAAC+TGG | + | chr1.4:57935263-57935282 | MS.gene39911:intron | 40.0% | |
TTTATACTGCCTGCCAAATG+CGG | + | chr1.4:57933392-57933411 | MS.gene39911:intron | 40.0% | |
TTTGCCTGGGAATTTACGAT+GGG | + | chr1.4:57931491-57931510 | MS.gene39911:CDS | 40.0% | |
! | AGAAATGTCCTGGGATTTTG+AGG | + | chr1.4:57931670-57931689 | MS.gene39911:CDS | 40.0% |
! | ATGCCCTAATCTGGAATCTA+TGG | + | chr1.4:57932132-57932151 | MS.gene39911:CDS | 40.0% |
! | ATTTACGATGGGAGGTTTTG+AGG | + | chr1.4:57931502-57931521 | MS.gene39911:CDS | 40.0% |
! | CGGGTTCCTTATTTACTTAG+TGG | + | chr1.4:57935091-57935110 | MS.gene39911:CDS | 40.0% |
! | CTTCTTGAACTTATGGACTG+TGG | + | chr1.4:57934250-57934269 | MS.gene39911:CDS | 40.0% |
! | TCCTTATTTACTTAGTGGCG+AGG | + | chr1.4:57935096-57935115 | MS.gene39911:CDS | 40.0% |
! | TCTAGAACCAGATCTAGATG+TGG | + | chr1.4:57931452-57931471 | MS.gene39911:CDS | 40.0% |
! | TGATAATGCAGGGATGAACT+AGG | + | chr1.4:57932715-57932734 | MS.gene39911:intron | 40.0% |
! | TTTGAGGCTTTCGCTTAGAA+TGG | + | chr1.4:57931686-57931705 | MS.gene39911:CDS | 40.0% |
!! | AGATGGAGATTTGTTGGATC+TGG | + | chr1.4:57931422-57931441 | MS.gene39911:CDS | 40.0% |
!! | TTGTCAGGATTTGTTAGTCG+AGG | + | chr1.4:57934753-57934772 | MS.gene39911:CDS | 40.0% |
!!! | ATCCTCCTTCGCTTTTTTTC+AGG | - | chr1.4:57935450-57935469 | None:intergenic | 40.0% |
!!! | CTTCGCTTTTTTTCAGGTTC+AGG | - | chr1.4:57935444-57935463 | None:intergenic | 40.0% |
!!! | GCAACTTTTGTTTTGTCCCA+CGG | + | chr1.4:57932526-57932545 | MS.gene39911:intron | 40.0% |
!!! | TCGCTTTTTTTCAGGTTCAG+GGG | - | chr1.4:57935442-57935461 | None:intergenic | 40.0% |
!!! | TGCTTTTTCATGCCCTAATC+TGG | + | chr1.4:57932123-57932142 | MS.gene39911:CDS | 40.0% |
AACTTTGCCTTCATCAGCAG+AGG | + | chr1.4:57932502-57932521 | MS.gene39911:intron | 45.0% | |
ACTTCCGTGTAATGTGCTTG+TGG | + | chr1.4:57935476-57935495 | MS.gene39911:CDS | 45.0% | |
AGATCTGGCATAAGTGACAG+TGG | + | chr1.4:57934027-57934046 | MS.gene39911:intron | 45.0% | |
AGTGAAATCTCTCTCAGCTG+CGG | - | chr1.4:57932999-57933018 | None:intergenic | 45.0% | |
CAGTCCACAAGCACATTACA+CGG | - | chr1.4:57935483-57935502 | None:intergenic | 45.0% | |
CATAGTTATGAGGTCAGTGC+TGG | - | chr1.4:57933045-57933064 | None:intergenic | 45.0% | |
CCAACCGCTGACGAAAATAA+CGG | + | chr1.4:57934304-57934323 | MS.gene39911:CDS | 45.0% | |
CTCAAAAGCCTCAAGATGGA+AGG | + | chr1.4:57932763-57932782 | MS.gene39911:CDS | 45.0% | |
GGCGAATGGTTATCTATAGC+AGG | - | chr1.4:57935037-57935056 | None:intergenic | 45.0% | |
GGCTTTCGCTTAGAATGGAA+AGG | + | chr1.4:57931691-57931710 | MS.gene39911:CDS | 45.0% | |
GGTTGCTGTCATAACAGATC+TGG | + | chr1.4:57934012-57934031 | MS.gene39911:intron | 45.0% | |
GTACAGATTCATACCCACTG+AGG | - | chr1.4:57933819-57933838 | None:intergenic | 45.0% | |
GTTTGCCTGGGAATTTACGA+TGG | + | chr1.4:57931490-57931509 | MS.gene39911:CDS | 45.0% | |
TAGAGTTGCTTGACCTCAGT+GGG | + | chr1.4:57933803-57933822 | MS.gene39911:CDS | 45.0% | |
TATCGTTTCTGTACCGTCTG+CGG | + | chr1.4:57931263-57931282 | MS.gene39911:CDS | 45.0% | |
TCACATTAGGGCAAAGAGCA+AGG | - | chr1.4:57934101-57934120 | None:intergenic | 45.0% | |
TCTACCTGATGGCTCCAAAA+GGG | + | chr1.4:57935066-57935085 | MS.gene39911:CDS | 45.0% | |
TCTGCACTCTCTGTCTAAGA+TGG | + | chr1.4:57932849-57932868 | MS.gene39911:CDS | 45.0% | |
TCTTTGACACCGCAACCAAT+CGG | + | chr1.4:57932164-57932183 | MS.gene39911:CDS | 45.0% | |
TGTTCATGCAACAGGTTGTC+AGG | + | chr1.4:57934738-57934757 | MS.gene39911:CDS | 45.0% | |
! | AGGCTTGACGATAAAGCGTT+TGG | + | chr1.4:57931375-57931394 | MS.gene39911:CDS | 45.0% |
! | ATAAGGAACCCGAACCCTTT+TGG | - | chr1.4:57935083-57935102 | None:intergenic | 45.0% |
! | CTCTTAGTGCTGCTCAATTG+AGG | + | chr1.4:57933147-57933166 | MS.gene39911:CDS | 45.0% |
! | GACGATAAAGCGTTTGGTGA+TGG | + | chr1.4:57931381-57931400 | MS.gene39911:CDS | 45.0% |
! | GCTCTGGGCAGTTTAAGTAT+AGG | - | chr1.4:57934532-57934551 | None:intergenic | 45.0% |
! | TCACGCTTCTTTTGTCTCCA+AGG | - | chr1.4:57933880-57933899 | None:intergenic | 45.0% |
! | TGGAGACAAAAGAAGCGTGA+TGG | + | chr1.4:57933880-57933899 | MS.gene39911:intron | 45.0% |
! | TTTTGTATCGGAGCTTTCGG+CGG | - | chr1.4:57931115-57931134 | None:intergenic | 45.0% |
!! | AAAGCGTTTGGTGATGGTGA+TGG | + | chr1.4:57931387-57931406 | MS.gene39911:CDS | 45.0% |
!! | GATGTGGAGATTGATTCGAG+CGG | + | chr1.4:57931468-57931487 | MS.gene39911:CDS | 45.0% |
!! | TTTGGTGATGGTGATGGAGA+TGG | + | chr1.4:57931393-57931412 | MS.gene39911:CDS | 45.0% |
ACCGCAACCAATCGGATCAA+TGG | + | chr1.4:57932172-57932191 | MS.gene39911:CDS | 50.0% | |
ACCTCCCATCGTAAATTCCC+AGG | - | chr1.4:57931498-57931517 | None:intergenic | 50.0% | |
AGCGAAAGCCTCAAAATCCC+AGG | - | chr1.4:57931681-57931700 | None:intergenic | 50.0% | |
AGTCGAGGCTATCCAAAGTC+AGG | + | chr1.4:57934768-57934787 | MS.gene39911:CDS | 50.0% | |
AGTTGCACCTCTGCTGATGA+AGG | - | chr1.4:57932512-57932531 | None:intergenic | 50.0% | |
CCGCAACCAATCGGATCAAT+GGG | + | chr1.4:57932173-57932192 | MS.gene39911:CDS | 50.0% | |
CGATGCTGCAGAAATGTCCT+GGG | + | chr1.4:57931661-57931680 | MS.gene39911:CDS | 50.0% | |
CGTTGTGGCCTTCCCAAAAA+AGG | + | chr1.4:57931168-57931187 | MS.gene39911:CDS | 50.0% | |
CTAGAGTTGCTTGACCTCAG+TGG | + | chr1.4:57933802-57933821 | MS.gene39911:CDS | 50.0% | |
CTGATGGCTCCAAAAGGGTT+CGG | + | chr1.4:57935071-57935090 | MS.gene39911:CDS | 50.0% | |
CTGCTCTCACATGTTTCAGG+TGG | + | chr1.4:57934199-57934218 | MS.gene39911:intron | 50.0% | |
GACGGAGGAGTTGAAGCTTA+GGG | + | chr1.4:57931605-57931624 | MS.gene39911:CDS | 50.0% | |
GATGGAGATGGAGATGGAGA+TGG | + | chr1.4:57931405-57931424 | MS.gene39911:CDS | 50.0% | |
GCACTGGACTTGATCTGTTG+AGG | + | chr1.4:57931355-57931374 | MS.gene39911:CDS | 50.0% | |
GCGGTTGGATCTGGGAAATT+AGG | - | chr1.4:57934292-57934311 | None:intergenic | 50.0% | |
GGAGTTGAAGCTTAGGGTTC+CGG | + | chr1.4:57931611-57931630 | MS.gene39911:CDS | 50.0% | |
GGCATAAGTGACAGTGGCAT+TGG | + | chr1.4:57934033-57934052 | MS.gene39911:CDS | 50.0% | |
GTCTACCTGATGGCTCCAAA+AGG | + | chr1.4:57935065-57935084 | MS.gene39911:CDS | 50.0% | |
GTTCCGGTGAAGGTTCATGT+TGG | + | chr1.4:57931627-57931646 | MS.gene39911:CDS | 50.0% | |
TAACGATGAATCTACCGGCG+TGG | - | chr1.4:57931241-57931260 | None:intergenic | 50.0% | |
TCGATGCTGCAGAAATGTCC+TGG | + | chr1.4:57931660-57931679 | MS.gene39911:CDS | 50.0% | |
TGATGGCTCCAAAAGGGTTC+GGG | + | chr1.4:57935072-57935091 | MS.gene39911:CDS | 50.0% | |
TTTCGTCAGCGGTTGGATCT+GGG | - | chr1.4:57934300-57934319 | None:intergenic | 50.0% | |
TTTGACGGTCTTGACGATCG+AGG | + | chr1.4:57931333-57931352 | MS.gene39911:CDS | 50.0% | |
! | ACACGAAGGCTTTAGCAGCT+AGG | - | chr1.4:57932607-57932626 | None:intergenic | 50.0% |
! | CCCATTGATCCGATTGGTTG+CGG | - | chr1.4:57932176-57932195 | None:intergenic | 50.0% |
! | GAAGGTGTGTAAGGGATGGA+GGG | + | chr1.4:57931557-57931576 | MS.gene39911:CDS | 50.0% |
! | TAAGCTCTAGCTGCACACGA+AGG | - | chr1.4:57932621-57932640 | None:intergenic | 50.0% |
! | TTGATTCGAGCGGTTTGCCT+GGG | + | chr1.4:57931478-57931497 | MS.gene39911:CDS | 50.0% |
! | TTTTCGTCAGCGGTTGGATC+TGG | - | chr1.4:57934301-57934320 | None:intergenic | 50.0% |
!! | ATTGATTCGAGCGGTTTGCC+TGG | + | chr1.4:57931477-57931496 | MS.gene39911:CDS | 50.0% |
!! | CCGTTATTTTCGTCAGCGGT+TGG | - | chr1.4:57934307-57934326 | None:intergenic | 50.0% |
!! | GATGGTGATGGAGATGGAGA+TGG | + | chr1.4:57931399-57931418 | MS.gene39911:CDS | 50.0% |
!!! | GGTCAGTGCTGGCATTTTCT+TGG | - | chr1.4:57933034-57933053 | None:intergenic | 50.0% |
!!! | TACGATGGGAGGTTTTGAGG+AGG | + | chr1.4:57931505-57931524 | MS.gene39911:CDS | 50.0% |
CGACGGAGGAGTTGAAGCTT+AGG | + | chr1.4:57931604-57931623 | MS.gene39911:CDS | 55.0% | |
CTCAGTTTGTGGGGTTGCAC+CGG | + | chr1.4:57934406-57934425 | MS.gene39911:CDS | 55.0% | |
GAAGCTTAGGGTTCCGGTGA+AGG | + | chr1.4:57931617-57931636 | MS.gene39911:CDS | 55.0% | |
GAGGAAGCTGTGGAAAGCGA+CGG | + | chr1.4:57931587-57931606 | MS.gene39911:CDS | 55.0% | |
GCCTGGGAATTTACGATGGG+AGG | + | chr1.4:57931494-57931513 | MS.gene39911:CDS | 55.0% | |
GTCAACCACCGTCGAATCTC+CGG | + | chr1.4:57931298-57931317 | MS.gene39911:CDS | 55.0% | |
GTGTAAGGGATGGAGGGAGA+CGG | + | chr1.4:57931563-57931582 | MS.gene39911:CDS | 55.0% | |
GTTGCTTCAGTGCCCCACTT+TGG | + | chr1.4:57934711-57934730 | MS.gene39911:CDS | 55.0% | |
TCACAGACACCGCATTTGGC+AGG | - | chr1.4:57933404-57933423 | None:intergenic | 55.0% | |
TTCTGTACCGTCTGCGGTCT+CGG | + | chr1.4:57931269-57931288 | MS.gene39911:CDS | 55.0% | |
! | CGAAGGTGTGTAAGGGATGG+AGG | + | chr1.4:57931556-57931575 | MS.gene39911:CDS | 55.0% |
! | GTGGTGGTTGTGGTGGAAAC+TGG | - | chr1.4:57931216-57931235 | None:intergenic | 55.0% |
!!! | CGAACCCTTTTGGAGCCATC+AGG | - | chr1.4:57935073-57935092 | None:intergenic | 55.0% |
!!! | GGTTTTGAGGAGGTTACCGC+CGG | + | chr1.4:57931515-57931534 | MS.gene39911:CDS | 55.0% |
ACCGCCGGCGGGATTGTTAT+CGG | + | chr1.4:57931530-57931549 | MS.gene39911:CDS | 60.0% | |
CGAATCACCGAGACCGCAGA+CGG | - | chr1.4:57931279-57931298 | None:intergenic | 60.0% | |
CGATGAATCTACCGGCGTGG+TGG | - | chr1.4:57931238-57931257 | None:intergenic | 60.0% | |
CGGCGAGCGCTTTCGTTTGA+CGG | + | chr1.4:57931318-57931337 | MS.gene39911:CDS | 60.0% | |
GAAGCTGTGGAAAGCGACGG+AGG | + | chr1.4:57931590-57931609 | MS.gene39911:CDS | 60.0% | |
GGGATTGTTATCGGCGGCGA+AGG | + | chr1.4:57931539-57931558 | MS.gene39911:CDS | 60.0% | |
GGTCTTGACGATCGAGGCAC+TGG | + | chr1.4:57931339-57931358 | MS.gene39911:CDS | 60.0% | |
TGAATCTACCGGCGTGGTGG+TGG | - | chr1.4:57931235-57931254 | None:intergenic | 60.0% | |
TTTGAGGAGGTTACCGCCGG+CGG | + | chr1.4:57931518-57931537 | MS.gene39911:CDS | 60.0% | |
! | ATCGGCGGCGAAGGTGTGTA+AGG | + | chr1.4:57931548-57931567 | MS.gene39911:CDS | 60.0% |
! | CGGCGAAGGTGTGTAAGGGA+TGG | + | chr1.4:57931553-57931572 | MS.gene39911:CDS | 60.0% |
! | TCGGCGGCGAAGGTGTGTAA+GGG | + | chr1.4:57931549-57931568 | MS.gene39911:CDS | 60.0% |
!! | CGTCAAACGAAAGCGCTCGC+CGG | - | chr1.4:57931320-57931339 | None:intergenic | 60.0% |
!! | TTTGTGGGGTTGCACCGGCT+TGG | + | chr1.4:57934411-57934430 | MS.gene39911:CDS | 60.0% |
AGCGCTCGCCGGAGATTCGA+CGG | - | chr1.4:57931309-57931328 | None:intergenic | 65.0% | |
CACAACCACCACCACCACGC+CGG | + | chr1.4:57931224-57931243 | MS.gene39911:CDS | 65.0% | |
GCCGATAACAATCCCGCCGG+CGG | - | chr1.4:57931534-57931553 | None:intergenic | 65.0% | |
GCCGCCGATAACAATCCCGC+CGG | - | chr1.4:57931537-57931556 | None:intergenic | 65.0% | |
GCCGCGTCGCAATCTTCACG+CGG | + | chr1.4:57931081-57931100 | MS.gene39911:CDS | 65.0% | |
GCCGCGTGAAGATTGCGACG+CGG | - | chr1.4:57931085-57931104 | None:intergenic | 65.0% | |
GCCGGCGGGATTGTTATCGG+CGG | + | chr1.4:57931533-57931552 | MS.gene39911:CDS | 65.0% | |
GCGTCGCAATCTTCACGCGG+CGG | + | chr1.4:57931084-57931103 | MS.gene39911:CDS | 65.0% | |
GCGTGAAGATTGCGACGCGG+CGG | - | chr1.4:57931082-57931101 | None:intergenic | 65.0% | |
TTGAGGAGGTTACCGCCGGC+GGG | + | chr1.4:57931519-57931538 | MS.gene39911:CDS | 65.0% | |
!! | ATCTACCGGCGTGGTGGTGG+TGG | - | chr1.4:57931232-57931251 | None:intergenic | 65.0% |
!! | CGTGGTGGTGGTGGTTGTGG+TGG | - | chr1.4:57931223-57931242 | None:intergenic | 65.0% |
AGGGATGGAGGGAGACGGCG+AGG | + | chr1.4:57931568-57931587 | MS.gene39911:CDS | 70.0% | |
GCTCGCCGGAGATTCGACGG+TGG | - | chr1.4:57931306-57931325 | None:intergenic | 70.0% | |
GGGAGACGGCGAGGAAGCTG+TGG | + | chr1.4:57931577-57931596 | MS.gene39911:CDS | 70.0% | |
!! | CGGCGTGGTGGTGGTGGTTG+TGG | - | chr1.4:57931226-57931245 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 57931060 | 57935503 | 57931060 | ID=MS.gene39911 |
chr1.4 | mRNA | 57931060 | 57935503 | 57931060 | ID=MS.gene39911.t1;Parent=MS.gene39911 |
chr1.4 | exon | 57931060 | 57931712 | 57931060 | ID=MS.gene39911.t1.exon1;Parent=MS.gene39911.t1 |
chr1.4 | CDS | 57931060 | 57931712 | 57931060 | ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1 |
chr1.4 | exon | 57932093 | 57932194 | 57932093 | ID=MS.gene39911.t1.exon2;Parent=MS.gene39911.t1 |
chr1.4 | CDS | 57932093 | 57932194 | 57932093 | ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1 |
chr1.4 | exon | 57932726 | 57932870 | 57932726 | ID=MS.gene39911.t1.exon3;Parent=MS.gene39911.t1 |
chr1.4 | CDS | 57932726 | 57932870 | 57932726 | ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1 |
chr1.4 | exon | 57932984 | 57933168 | 57932984 | ID=MS.gene39911.t1.exon4;Parent=MS.gene39911.t1 |
chr1.4 | CDS | 57932984 | 57933168 | 57932984 | ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1 |
chr1.4 | exon | 57933720 | 57933824 | 57933720 | ID=MS.gene39911.t1.exon5;Parent=MS.gene39911.t1 |
chr1.4 | CDS | 57933720 | 57933824 | 57933720 | ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1 |
chr1.4 | exon | 57934029 | 57934126 | 57934029 | ID=MS.gene39911.t1.exon6;Parent=MS.gene39911.t1 |
chr1.4 | CDS | 57934029 | 57934126 | 57934029 | ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1 |
chr1.4 | exon | 57934218 | 57934435 | 57934218 | ID=MS.gene39911.t1.exon7;Parent=MS.gene39911.t1 |
chr1.4 | CDS | 57934218 | 57934435 | 57934218 | ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1 |
chr1.4 | exon | 57934527 | 57934593 | 57934527 | ID=MS.gene39911.t1.exon8;Parent=MS.gene39911.t1 |
chr1.4 | CDS | 57934527 | 57934593 | 57934527 | ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1 |
chr1.4 | exon | 57934704 | 57934789 | 57934704 | ID=MS.gene39911.t1.exon9;Parent=MS.gene39911.t1 |
chr1.4 | CDS | 57934704 | 57934789 | 57934704 | ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1 |
chr1.4 | exon | 57935019 | 57935117 | 57935019 | ID=MS.gene39911.t1.exon10;Parent=MS.gene39911.t1 |
chr1.4 | CDS | 57935019 | 57935117 | 57935019 | ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1 |
chr1.4 | exon | 57935438 | 57935503 | 57935438 | ID=MS.gene39911.t1.exon11;Parent=MS.gene39911.t1 |
chr1.4 | CDS | 57935438 | 57935503 | 57935438 | ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1 |
Gene Sequence |
Protein sequence |