AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39911


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39911.t1 MTR_1g070515 98.194 609 9 1 1 607 1 609 0.0 1208
MS.gene39911.t1 MTR_1g070515 97.326 561 13 1 1 559 1 561 0.0 1098
MS.gene39911.t1 MTR_2g066740 80.870 115 20 2 119 232 34 147 1.14e-53 183
MS.gene39911.t1 MTR_0878s0020 89.535 86 9 0 132 217 1 86 9.43e-46 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39911.t1 AT3G54650 58.696 598 195 9 28 605 27 592 0.0 641

Find 151 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAATGCTTTCTCTTGTTCT+TGG 0.137595 1.4:+57933727 MS.gene39911:CDS
ATTGCCACTTCTTGAACTTA+TGG 0.229544 1.4:+57934243 MS.gene39911:CDS
AGATTACTTGAGGTCACATT+AGG 0.296935 1.4:-57934111 None:intergenic
ATGCCCTAATCTGGAATCTA+TGG 0.302684 1.4:+57932132 MS.gene39911:CDS
TCTTGTAGAAATCTGCATTC+AGG 0.308829 1.4:+57934572 MS.gene39911:CDS
ATAAGGAACCCGAACCCTTT+TGG 0.310964 1.4:-57935080 None:intergenic
TATGCTTGATGATTAGCTTT+TGG 0.316735 1.4:-57934369 None:intergenic
ACCTCGCCACTAAGTAAATA+AGG 0.317400 1.4:-57935097 None:intergenic
GGAGTTGAAGCTTAGGGTTC+CGG 0.327873 1.4:+57931611 MS.gene39911:CDS
CGGCGAGCGCTTTCGTTTGA+CGG 0.335154 1.4:+57931318 MS.gene39911:CDS
ACCGCCGGCGGGATTGTTAT+CGG 0.335562 1.4:+57931530 MS.gene39911:CDS
GTGGTGGTTGTGGTGGAAAC+TGG 0.336712 1.4:-57931213 None:intergenic
ATGGAAGGTTGTTCTAATCT+AGG 0.345750 1.4:+57932778 MS.gene39911:CDS
TTCTGTACCGTCTGCGGTCT+CGG 0.351169 1.4:+57931269 MS.gene39911:CDS
CTGACTTTGTTACCTGACTT+TGG 0.352864 1.4:-57934780 None:intergenic
CGGGTTCCTTATTTACTTAG+TGG 0.355932 1.4:+57935091 MS.gene39911:CDS
TTGGAAAATGTTCATGCAAC+AGG 0.363021 1.4:+57934730 MS.gene39911:CDS
CATAACTATGATTGAAGGAT+TGG 0.367458 1.4:+57933055 MS.gene39911:CDS
CTCTGGGCAGTTTAAGTATA+GGG 0.378634 1.4:-57934528 None:intergenic
CGGCGTGGTGGTGGTGGTTG+TGG 0.382786 1.4:-57931223 None:intergenic
TCTCCATAGATTCCAGATTA+GGG 0.385939 1.4:-57932135 None:intergenic
AGGTCAAGCAACTCTAGATT+TGG 0.388297 1.4:-57933796 None:intergenic
TGTTCATGCAACAGGTTGTC+AGG 0.400235 1.4:+57934738 MS.gene39911:CDS
CGACGGAGGAGTTGAAGCTT+AGG 0.401872 1.4:+57931604 MS.gene39911:CDS
CTGATGGCTCCAAAAGGGTT+CGG 0.402880 1.4:+57935071 MS.gene39911:CDS
CTCTTAGTGCTGCTCAATTG+AGG 0.407117 1.4:+57933147 MS.gene39911:CDS
AGATTCAGATCATTCAGCTC+TGG 0.409333 1.4:-57934545 None:intergenic
GCGGTTGGATCTGGGAAATT+AGG 0.409772 1.4:-57934289 None:intergenic
CTCAGTTTGTGGGGTTGCAC+CGG 0.411998 1.4:+57934406 MS.gene39911:CDS
GCTCTGGGCAGTTTAAGTAT+AGG 0.415214 1.4:-57934529 None:intergenic
AGATGGAGATGGAGATTTGT+TGG 0.417613 1.4:+57931416 MS.gene39911:CDS
AGATGGAGATTTGTTGGATC+TGG 0.419722 1.4:+57931422 MS.gene39911:CDS
GATTACTTGAGGTCACATTA+GGG 0.425752 1.4:-57934110 None:intergenic
AAAGCCGCATTGAAGCTATA+TGG 0.425901 1.4:-57933106 None:intergenic
TGATGGCTCCAAAAGGGTTC+GGG 0.430597 1.4:+57935072 MS.gene39911:CDS
TTTGAGGCTTTCGCTTAGAA+TGG 0.430849 1.4:+57931686 MS.gene39911:CDS
AGGCTTGACGATAAAGCGTT+TGG 0.431841 1.4:+57931375 MS.gene39911:CDS
ATCTCCATAGATTCCAGATT+AGG 0.431846 1.4:-57932136 None:intergenic
ACCGCAACCAATCGGATCAA+TGG 0.439840 1.4:+57932172 MS.gene39911:CDS
CCATCAGGTAGACGTTTAGA+AGG 0.443237 1.4:-57935055 None:intergenic
ATCGGCGGCGAAGGTGTGTA+AGG 0.445828 1.4:+57931548 MS.gene39911:CDS
GGCATAAGTGACAGTGGCAT+TGG 0.453603 1.4:+57934033 MS.gene39911:CDS
CCCATTGATCCGATTGGTTG+CGG 0.458118 1.4:-57932173 None:intergenic
ATTGATTCGAGCGGTTTGCC+TGG 0.459369 1.4:+57931477 MS.gene39911:CDS
CATCTAGTTTGTCTACACTT+TGG 0.463348 1.4:+57932818 MS.gene39911:CDS
GTCAACCACCGTCGAATCTC+CGG 0.463535 1.4:+57931298 MS.gene39911:CDS
GTTGCTTCAGTGCCCCACTT+TGG 0.468923 1.4:+57934711 MS.gene39911:CDS
TGGAAGGTTGTTCTAATCTA+GGG 0.472778 1.4:+57932779 MS.gene39911:CDS
GACCTCATAACTATGATTGA+AGG 0.473186 1.4:+57933050 MS.gene39911:CDS
ATAACTATGATTGAAGGATT+GGG 0.473642 1.4:+57933056 MS.gene39911:CDS
GTCTACCTGATGGCTCCAAA+AGG 0.478330 1.4:+57935065 MS.gene39911:CDS
CCGCAACCAATCGGATCAAT+GGG 0.483382 1.4:+57932173 MS.gene39911:CDS
GATTCAGATCATTCAGCTCT+GGG 0.484073 1.4:-57934544 None:intergenic
TCAATCTCCACATCTAGATC+TGG 0.486325 1.4:-57931459 None:intergenic
TCTAAAGAAACTCAGTTTGT+GGG 0.488471 1.4:+57934396 MS.gene39911:CDS
GAAGCTTAGGGTTCCGGTGA+AGG 0.494599 1.4:+57931617 MS.gene39911:CDS
TTTCGTCAGCGGTTGGATCT+GGG 0.495746 1.4:-57934297 None:intergenic
TTTGTGGGGTTGCACCGGCT+TGG 0.495778 1.4:+57934411 MS.gene39911:CDS
CGTGGTGGTGGTGGTTGTGG+TGG 0.497371 1.4:-57931220 None:intergenic
CGAAGGTGTGTAAGGGATGG+AGG 0.497940 1.4:+57931556 MS.gene39911:CDS
GGCGAATGGTTATCTATAGC+AGG 0.505677 1.4:-57935034 None:intergenic
GCCTGGGAATTTACGATGGG+AGG 0.506430 1.4:+57931494 MS.gene39911:CDS
ATCTACCGGCGTGGTGGTGG+TGG 0.506650 1.4:-57931229 None:intergenic
GGGATTGTTATCGGCGGCGA+AGG 0.511793 1.4:+57931539 MS.gene39911:CDS
GGTCTTGACGATCGAGGCAC+TGG 0.513418 1.4:+57931339 MS.gene39911:CDS
TGAATCTACCGGCGTGGTGG+TGG 0.515249 1.4:-57931232 None:intergenic
CATAGTTATGAGGTCAGTGC+TGG 0.516035 1.4:-57933042 None:intergenic
TCGATGCTGCAGAAATGTCC+TGG 0.517320 1.4:+57931660 MS.gene39911:CDS
GACGGAGGAGTTGAAGCTTA+GGG 0.522111 1.4:+57931605 MS.gene39911:CDS
TTGATTCGAGCGGTTTGCCT+GGG 0.522215 1.4:+57931478 MS.gene39911:CDS
TATATGCTGTAGATTTGCAC+TGG 0.525532 1.4:-57934344 None:intergenic
AGTCGAGGCTATCCAAAGTC+AGG 0.528185 1.4:+57934768 MS.gene39911:CDS
TTGAGGAGGTTACCGCCGGC+GGG 0.528416 1.4:+57931519 MS.gene39911:CDS
ACCTCCCATCGTAAATTCCC+AGG 0.528720 1.4:-57931495 None:intergenic
ACAAACTGAGTTTCTTTAGA+CGG 0.530553 1.4:-57934393 None:intergenic
GTCTAAAGAAACTCAGTTTG+TGG 0.530730 1.4:+57934395 MS.gene39911:CDS
TTTGGTGATGGTGATGGAGA+TGG 0.530866 1.4:+57931393 MS.gene39911:CDS
TCTTTGACACCGCAACCAAT+CGG 0.534722 1.4:+57932164 MS.gene39911:CDS
TGGGAAATTAGGATCACATA+TGG 0.540618 1.4:-57934278 None:intergenic
CACAACCACCACCACCACGC+CGG 0.541400 1.4:+57931224 MS.gene39911:CDS
ATCCTTCAATCATAGTTATG+AGG 0.542576 1.4:-57933052 None:intergenic
AAATCTCAAAAGCCTCAAGA+TGG 0.542982 1.4:+57932759 MS.gene39911:CDS
TGATAATGCAGGGATGAACT+AGG 0.544759 1.4:+57932715 MS.gene39911:intron
GGGAGACGGCGAGGAAGCTG+TGG 0.544858 1.4:+57931577 MS.gene39911:CDS
AATCCAACATGAACCTTCAC+CGG 0.547681 1.4:-57931630 None:intergenic
GTGTAAGGGATGGAGGGAGA+CGG 0.554978 1.4:+57931563 MS.gene39911:CDS
TTTGAGGAGGTTACCGCCGG+CGG 0.555516 1.4:+57931518 MS.gene39911:CDS
AGCGCTCGCCGGAGATTCGA+CGG 0.559630 1.4:-57931306 None:intergenic
AGCGAAAGCCTCAAAATCCC+AGG 0.560281 1.4:-57931678 None:intergenic
TAGAACAACCTTCCATCTTG+AGG 0.561903 1.4:-57932771 None:intergenic
GGCTTTCGCTTAGAATGGAA+AGG 0.562043 1.4:+57931691 MS.gene39911:CDS
TTTGCCTGGGAATTTACGAT+GGG 0.562437 1.4:+57931491 MS.gene39911:CDS
GATGGAGATGGAGATGGAGA+TGG 0.562789 1.4:+57931405 MS.gene39911:CDS
GCACTGGACTTGATCTGTTG+AGG 0.563835 1.4:+57931355 MS.gene39911:CDS
GACGATAAAGCGTTTGGTGA+TGG 0.566160 1.4:+57931381 MS.gene39911:CDS
TCTACCTGATGGCTCCAAAA+GGG 0.566567 1.4:+57935066 MS.gene39911:CDS
CTCTAGATTTGGATAGCTTG+AGG 0.571915 1.4:-57933785 None:intergenic
CTCAAAAGCCTCAAGATGGA+AGG 0.571984 1.4:+57932763 MS.gene39911:CDS
CGATGCTGCAGAAATGTCCT+GGG 0.572129 1.4:+57931661 MS.gene39911:CDS
CGTCAAACGAAAGCGCTCGC+CGG 0.573225 1.4:-57931317 None:intergenic
TTGTCAGGATTTGTTAGTCG+AGG 0.573290 1.4:+57934753 MS.gene39911:CDS
TAGAGTTGCTTGACCTCAGT+GGG 0.573574 1.4:+57933803 MS.gene39911:CDS
CCTTCTAAACGTCTACCTGA+TGG 0.573862 1.4:+57935055 MS.gene39911:CDS
TCCTTATTTACTTAGTGGCG+AGG 0.573887 1.4:+57935096 MS.gene39911:CDS
TCTGCACTCTCTGTCTAAGA+TGG 0.574052 1.4:+57932849 MS.gene39911:CDS
TCACATTAGGGCAAAGAGCA+AGG 0.574084 1.4:-57934098 None:intergenic
GATGGTGATGGAGATGGAGA+TGG 0.574313 1.4:+57931399 MS.gene39911:CDS
GTAATACCCATTGATCCGAT+TGG 0.575015 1.4:-57932179 None:intergenic
CGGCGAAGGTGTGTAAGGGA+TGG 0.576084 1.4:+57931553 MS.gene39911:CDS
AAAGCGTTTGGTGATGGTGA+TGG 0.580418 1.4:+57931387 MS.gene39911:CDS
GAAGGTGTGTAAGGGATGGA+GGG 0.586174 1.4:+57931557 MS.gene39911:CDS
CGATGAATCTACCGGCGTGG+TGG 0.586581 1.4:-57931235 None:intergenic
GTTCCGGTGAAGGTTCATGT+TGG 0.588296 1.4:+57931627 MS.gene39911:CDS
GTTTGCCTGGGAATTTACGA+TGG 0.594948 1.4:+57931490 MS.gene39911:CDS
TATCGTTTCTGTACCGTCTG+CGG 0.597284 1.4:+57931263 MS.gene39911:CDS
CAGTCCATAAGTTCAAGAAG+TGG 0.599028 1.4:-57934247 None:intergenic
ACTTCCGTGTAATGTGCTTG+TGG 0.602265 1.4:+57935476 MS.gene39911:CDS
CCAACCGCTGACGAAAATAA+CGG 0.604163 1.4:+57934304 MS.gene39911:CDS
AAACGTGGTAGTTACAATTG+TGG 0.606563 1.4:+57931144 MS.gene39911:CDS
AGGGATGGAGGGAGACGGCG+AGG 0.611493 1.4:+57931568 MS.gene39911:CDS
GCCGCGTCGCAATCTTCACG+CGG 0.616141 1.4:+57931081 MS.gene39911:CDS
CGAATCACCGAGACCGCAGA+CGG 0.619376 1.4:-57931276 None:intergenic
ATTGAAACTCACATCCAAGC+CGG 0.620954 1.4:-57934425 None:intergenic
CAGTCCACAAGCACATTACA+CGG 0.620998 1.4:-57935480 None:intergenic
GCCGATAACAATCCCGCCGG+CGG 0.621466 1.4:-57931531 None:intergenic
TCGGCGGCGAAGGTGTGTAA+GGG 0.627171 1.4:+57931549 MS.gene39911:CDS
GAGGAAGCTGTGGAAAGCGA+CGG 0.628768 1.4:+57931587 MS.gene39911:CDS
CTAAAGAAACTCAGTTTGTG+GGG 0.628993 1.4:+57934397 MS.gene39911:CDS
GCCGCCGATAACAATCCCGC+CGG 0.629360 1.4:-57931534 None:intergenic
GCGTGAAGATTGCGACGCGG+CGG 0.630010 1.4:-57931079 None:intergenic
GGAAGGTTGTTCTAATCTAG+GGG 0.635613 1.4:+57932780 MS.gene39911:CDS
AGTTACAATTGTGGACGTTG+TGG 0.636586 1.4:+57931153 MS.gene39911:CDS
TAGACAAACTAGATGAAGAG+AGG 0.636819 1.4:-57932810 None:intergenic
GTAGACGTTTAGAAGGCGAA+TGG 0.637230 1.4:-57935048 None:intergenic
TCTAGAACCAGATCTAGATG+TGG 0.637574 1.4:+57931452 MS.gene39911:CDS
CTTCTTGAACTTATGGACTG+TGG 0.641932 1.4:+57934250 MS.gene39911:CDS
ATAGATAACGATGAATCTAC+CGG 0.642583 1.4:-57931243 None:intergenic
AGTGAAATCTCTCTCAGCTG+CGG 0.645007 1.4:-57932996 None:intergenic
CTAGAGTTGCTTGACCTCAG+TGG 0.647313 1.4:+57933802 MS.gene39911:CDS
GAAGCTGTGGAAAGCGACGG+AGG 0.650091 1.4:+57931590 MS.gene39911:CDS
GAAGGTTGTTCTAATCTAGG+GGG 0.651856 1.4:+57932781 MS.gene39911:CDS
TTTGACGGTCTTGACGATCG+AGG 0.668066 1.4:+57931333 MS.gene39911:CDS
GCCGGCGGGATTGTTATCGG+CGG 0.681604 1.4:+57931533 MS.gene39911:CDS
AGATCTGGCATAAGTGACAG+TGG 0.684251 1.4:+57934027 MS.gene39911:intron
GCCGCGTGAAGATTGCGACG+CGG 0.689777 1.4:-57931082 None:intergenic
GCGTCGCAATCTTCACGCGG+CGG 0.696177 1.4:+57931084 MS.gene39911:CDS
TAACGATGAATCTACCGGCG+TGG 0.708007 1.4:-57931238 None:intergenic
GCTCGCCGGAGATTCGACGG+TGG 0.736622 1.4:-57931303 None:intergenic
GATGTGGAGATTGATTCGAG+CGG 0.746668 1.4:+57931468 MS.gene39911:CDS
ACATCCATATAGCTTCAATG+CGG 0.786151 1.4:+57933102 MS.gene39911:CDS
GTACAGATTCATACCCACTG+AGG 0.831236 1.4:-57933816 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATTAATTAATTGGTT+TGG + chr1.4:57931895-57931914 MS.gene39911:intron 10.0%
!! ATCTCAATTTATTAATTAAT+TGG + chr1.4:57931890-57931909 MS.gene39911:intron 10.0%
!!! GATTATTTTCATTTATTAAT+TGG + chr1.4:57934676-57934695 MS.gene39911:intron 10.0%
!! AATACACACTAATAAAAATT+AGG + chr1.4:57933466-57933485 MS.gene39911:intron 15.0%
!! AATCAATCATACAATTTAAA+AGG - chr1.4:57934660-57934679 None:intergenic 15.0%
!! CTAATTTAATCATGAATTAA+TGG + chr1.4:57931774-57931793 MS.gene39911:intron 15.0%
!! CTTTGATTATAATTTATCTA+TGG - chr1.4:57933915-57933934 None:intergenic 15.0%
!! TAAAAAAGAATATGCATTAA+TGG - chr1.4:57934467-57934486 None:intergenic 15.0%
!! TTTCACATTCAAAATAAAAT+CGG - chr1.4:57935379-57935398 None:intergenic 15.0%
!!! ATTAATGCATATTCTTTTTT+AGG + chr1.4:57934466-57934485 MS.gene39911:intron 15.0%
!! AAAACATATTGTGTTTATCT+AGG + chr1.4:57935153-57935172 MS.gene39911:intron 20.0%
!! AAAAGGATGATGAAAAAAAT+TGG + chr1.4:57931922-57931941 MS.gene39911:intron 20.0%
!! AATTAATCTTATTCTTAACG+TGG - chr1.4:57931734-57931753 None:intergenic 20.0%
!! ACAATAAATTGCCAAATAAA+AGG - chr1.4:57933177-57933196 None:intergenic 20.0%
!! AGCATTGTAGTTAAAATAAT+TGG - chr1.4:57933439-57933458 None:intergenic 20.0%
!! TCCAAATATACAATTAATCA+GGG + chr1.4:57933699-57933718 MS.gene39911:intron 20.0%
!! TTTAAGAAATCAAGTTTGAT+GGG + chr1.4:57933991-57934010 MS.gene39911:intron 20.0%
!!! AAGAAAAATTGGATTTTCTA+GGG + chr1.4:57935307-57935326 MS.gene39911:intron 20.0%
!!! TTAATTGGTTTGGTTATAAA+AGG + chr1.4:57931905-57931924 MS.gene39911:intron 20.0%
!!! TTATTTGATAGTTACAAAAC+AGG - chr1.4:57934614-57934633 None:intergenic 20.0%
!!! TTCTTTTCAAAATTATTTGC+AGG + chr1.4:57934505-57934524 MS.gene39911:intron 20.0%
!!! TTTCTTTCCTTTTTTTGTAT+CGG - chr1.4:57931127-57931146 None:intergenic 20.0%
!!! TTTTTAAAATGTATTTGCCT+TGG + chr1.4:57933860-57933879 MS.gene39911:intron 20.0%
! AAAGTAAGTTTGTGTATCAA+TGG + chr1.4:57935229-57935248 MS.gene39911:intron 25.0%
! ACATTATTAGCATATATGCA+TGG + chr1.4:57932640-57932659 MS.gene39911:intron 25.0%
! ATAACTATGATTGAAGGATT+GGG + chr1.4:57933056-57933075 MS.gene39911:CDS 25.0%
! ATATATTTATCCGAAACTCA+TGG + chr1.4:57933567-57933586 MS.gene39911:intron 25.0%
! ATTAATATCTTCAACTGAGT+GGG - chr1.4:57933670-57933689 None:intergenic 25.0%
! CAAAGTTACAATCTATAACA+TGG - chr1.4:57932489-57932508 None:intergenic 25.0%
! CAAATATACAATTAATCAGG+GGG + chr1.4:57933701-57933720 MS.gene39911:intron 25.0%
! CCAAATATACAATTAATCAG+GGG + chr1.4:57933700-57933719 MS.gene39911:intron 25.0%
! GTCCAAATATACAATTAATC+AGG + chr1.4:57933698-57933717 MS.gene39911:intron 25.0%
! GTTTAAGAAATCAAGTTTGA+TGG + chr1.4:57933990-57934009 MS.gene39911:intron 25.0%
! GTTTGTTTGATATTTATTCC+AGG + chr1.4:57934951-57934970 MS.gene39911:intron 25.0%
! TCTAAGTATGCAATTAATGT+TGG + chr1.4:57932279-57932298 MS.gene39911:intron 25.0%
! TGATTTCTTAAACAAAGACA+TGG - chr1.4:57933983-57934002 None:intergenic 25.0%
!! AAAATCCAATTTTTCTTCTG+TGG - chr1.4:57935304-57935323 None:intergenic 25.0%
!! AACCAATGCTTTTAAATTGT+AGG + chr1.4:57932962-57932981 MS.gene39911:intron 25.0%
!! ATATTGTGTTTATCTAGGAT+GGG + chr1.4:57935158-57935177 MS.gene39911:intron 25.0%
!! ATTTATTAATTGGTTCAGAG+AGG + chr1.4:57934686-57934705 MS.gene39911:intron 25.0%
!! CTACAAACTTTTATAACAGA+TGG - chr1.4:57933244-57933263 None:intergenic 25.0%
!! GAAGAAAAATTGGATTTTCT+AGG + chr1.4:57935306-57935325 MS.gene39911:intron 25.0%
!! TACCTACAATTTAAAAGCAT+TGG - chr1.4:57932967-57932986 None:intergenic 25.0%
!! TTCTATGTGTAATGAGTTTT+CGG + chr1.4:57932246-57932265 MS.gene39911:intron 25.0%
!! TTTTATACAATGTGAAAGTG+AGG + chr1.4:57932313-57932332 MS.gene39911:intron 25.0%
!!! ATCCTTTATGATTTGTTTGT+AGG + chr1.4:57934997-57935016 MS.gene39911:intron 25.0%
!!! ATTACAGTTATGTCCTTTTT+TGG - chr1.4:57931184-57931203 None:intergenic 25.0%
!!! GGATATTTTAAATTAGAACC+AGG - chr1.4:57934981-57935000 None:intergenic 25.0%
!!! TGAGTTTTGTGAAATAATTG+AGG - chr1.4:57934147-57934166 None:intergenic 25.0%
!!! TTACAGTTATGTCCTTTTTT+GGG - chr1.4:57931183-57931202 None:intergenic 25.0%
ACAAAAAAAGGAAAGAAACG+TGG + chr1.4:57931129-57931148 MS.gene39911:CDS 30.0%
ACAAACTGAGTTTCTTTAGA+CGG - chr1.4:57934396-57934415 None:intergenic 30.0%
ACATAGAAGCAGCAAAAAAA+AGG - chr1.4:57932234-57932253 None:intergenic 30.0%
ACTTCAACGTCAATAAGAAT+CGG - chr1.4:57933841-57933860 None:intergenic 30.0%
AGATCGATGCACAAAAAAAT+AGG + chr1.4:57931857-57931876 MS.gene39911:intron 30.0%
ATAGATAACGATGAATCTAC+CGG - chr1.4:57931246-57931265 None:intergenic 30.0%
ATCCTTCAATCATAGTTATG+AGG - chr1.4:57933055-57933074 None:intergenic 30.0%
ATGCAGAGAAAATTAGTTCA+AGG - chr1.4:57934907-57934926 None:intergenic 30.0%
ATGTGACAAAAGATTACTTG+AGG - chr1.4:57934124-57934143 None:intergenic 30.0%
ATTTCGGATACTCATAACTT+TGG - chr1.4:57933517-57933536 None:intergenic 30.0%
CAGTTAAAAGATCGGAATTT+CGG - chr1.4:57933533-57933552 None:intergenic 30.0%
CATAACTATGATTGAAGGAT+TGG + chr1.4:57933055-57933074 MS.gene39911:CDS 30.0%
CATAGAAGCAGCAAAAAAAA+GGG - chr1.4:57932233-57932252 None:intergenic 30.0%
CATATTGTGTTTATCTAGGA+TGG + chr1.4:57935157-57935176 MS.gene39911:intron 30.0%
CATTAATATCTTCAACTGAG+TGG - chr1.4:57933671-57933690 None:intergenic 30.0%
CATTGTAAAAGACCAAACAT+AGG + chr1.4:57933357-57933376 MS.gene39911:intron 30.0%
CCAATTAATAATGCCAAACA+CGG - chr1.4:57932404-57932423 None:intergenic 30.0%
CCCCTGATTAATTGTATATT+TGG - chr1.4:57933703-57933722 None:intergenic 30.0%
CTGAAATTTAAATCTTCCGT+GGG - chr1.4:57932545-57932564 None:intergenic 30.0%
GACCTACAAACAAATCATAA+AGG - chr1.4:57935002-57935021 None:intergenic 30.0%
GATTTCATCCATTTACATCA+TGG - chr1.4:57932452-57932471 None:intergenic 30.0%
TACAATTTAAAAGGAAGTCC+TGG - chr1.4:57934651-57934670 None:intergenic 30.0%
TAGTCCAACAGTTAAAAGAT+CGG - chr1.4:57933541-57933560 None:intergenic 30.0%
TCAATATGAATGCAATCTCA+TGG - chr1.4:57932930-57932949 None:intergenic 30.0%
TCTAAAGAAACTCAGTTTGT+GGG + chr1.4:57934396-57934415 MS.gene39911:CDS 30.0%
TGCAGAGAAAATTAGTTCAA+GGG - chr1.4:57934906-57934925 None:intergenic 30.0%
TTACAAAACAGGAACATGAA+GGG - chr1.4:57934603-57934622 None:intergenic 30.0%
TTCAAATGCCATGATGTAAA+TGG + chr1.4:57932441-57932460 MS.gene39911:intron 30.0%
TTTCGGATACTCATAACTTT+GGG - chr1.4:57933516-57933535 None:intergenic 30.0%
! ATAGATTTTAGATCCGTGTT+TGG + chr1.4:57932388-57932407 MS.gene39911:intron 30.0%
! ATGTTCAACTATGATAATGC+AGG + chr1.4:57932704-57932723 MS.gene39911:intron 30.0%
! ATTGAGGTTTGCCTTTTATT+TGG + chr1.4:57933163-57933182 MS.gene39911:intron 30.0%
! GTCTGTTTTCATGTTGTTAT+TGG + chr1.4:57933195-57933214 MS.gene39911:intron 30.0%
! TCTGAAATTTAAATCTTCCG+TGG - chr1.4:57932546-57932565 None:intergenic 30.0%
! TGTTCAACTATGATAATGCA+GGG + chr1.4:57932705-57932724 MS.gene39911:intron 30.0%
! TTCTTTTGTCAGCAACAAAT+CGG - chr1.4:57932741-57932760 None:intergenic 30.0%
!! AATTCCGATCTTTTAACTGT+TGG + chr1.4:57933534-57933553 MS.gene39911:intron 30.0%
!! AGAAGTCTTTTAAGTGTTTC+AGG - chr1.4:57934078-57934097 None:intergenic 30.0%
!! ATAATTTGTTGCAACTTACC+AGG + chr1.4:57934630-57934649 MS.gene39911:intron 30.0%
!! CTATGTTTGGTCTTTTACAA+TGG - chr1.4:57933359-57933378 None:intergenic 30.0%
!! GAAGTCTTTTAAGTGTTTCA+GGG - chr1.4:57934077-57934096 None:intergenic 30.0%
!! TCTTTTAACTGTTGGACTAA+AGG + chr1.4:57933542-57933561 MS.gene39911:intron 30.0%
!!! TATGCTTGATGATTAGCTTT+TGG - chr1.4:57934372-57934391 None:intergenic 30.0%
!!! TTTTTTTGTATCGGAGCTTT+CGG - chr1.4:57931118-57931137 None:intergenic 30.0%
AAACGTGGTAGTTACAATTG+TGG + chr1.4:57931144-57931163 MS.gene39911:CDS 35.0%
AAATCTCAAAAGCCTCAAGA+TGG + chr1.4:57932759-57932778 MS.gene39911:CDS 35.0%
ACATCCATATAGCTTCAATG+CGG + chr1.4:57933102-57933121 MS.gene39911:CDS 35.0%
AGATTACTTGAGGTCACATT+AGG - chr1.4:57934114-57934133 None:intergenic 35.0%
ATATTTATTCCAGGCTTTCC+TGG + chr1.4:57934960-57934979 MS.gene39911:intron 35.0%
ATCTCCATAGATTCCAGATT+AGG - chr1.4:57932139-57932158 None:intergenic 35.0%
ATGGAAGGTTGTTCTAATCT+AGG + chr1.4:57932778-57932797 MS.gene39911:CDS 35.0%
ATTATGCACACCATGAGTTT+CGG - chr1.4:57933580-57933599 None:intergenic 35.0%
ATTCGACATGATCCTATGTT+TGG - chr1.4:57933372-57933391 None:intergenic 35.0%
CACTGCAACATGAAACAAAT+CGG - chr1.4:57932075-57932094 None:intergenic 35.0%
CCGTGTTTGGCATTATTAAT+TGG + chr1.4:57932401-57932420 MS.gene39911:intron 35.0%
CTAAAGAAACTCAGTTTGTG+GGG + chr1.4:57934397-57934416 MS.gene39911:CDS 35.0%
CTATAGCAGGAAAAACATTG+CGG - chr1.4:57935024-57935043 None:intergenic 35.0%
GAAAGCTCCGATACAAAAAA+AGG + chr1.4:57931117-57931136 MS.gene39911:CDS 35.0%
GAACACTACTGAAACAAGAA+AGG - chr1.4:57934811-57934830 None:intergenic 35.0%
GACCTCATAACTATGATTGA+AGG + chr1.4:57933050-57933069 MS.gene39911:CDS 35.0%
GATTACTTGAGGTCACATTA+GGG - chr1.4:57934113-57934132 None:intergenic 35.0%
GTAAATGGATGAAATCCTGA+TGG + chr1.4:57932456-57932475 MS.gene39911:intron 35.0%
GTCTAAAGAAACTCAGTTTG+TGG + chr1.4:57934395-57934414 MS.gene39911:CDS 35.0%
GTTACAAAACAGGAACATGA+AGG - chr1.4:57934604-57934623 None:intergenic 35.0%
TACAAAACAGGAACATGAAG+GGG - chr1.4:57934602-57934621 None:intergenic 35.0%
TAGACAAACTAGATGAAGAG+AGG - chr1.4:57932813-57932832 None:intergenic 35.0%
TATATGCTGTAGATTTGCAC+TGG - chr1.4:57934347-57934366 None:intergenic 35.0%
TCTCCATAGATTCCAGATTA+GGG - chr1.4:57932138-57932157 None:intergenic 35.0%
TCTTATTCTTAACGTGGATC+TGG - chr1.4:57931728-57931747 None:intergenic 35.0%
TCTTGTAGAAATCTGCATTC+AGG + chr1.4:57934572-57934591 MS.gene39911:CDS 35.0%
TGGAAGGTTGTTCTAATCTA+GGG + chr1.4:57932779-57932798 MS.gene39911:CDS 35.0%
TGGGAAATTAGGATCACATA+TGG - chr1.4:57934281-57934300 None:intergenic 35.0%
TTGGAAAATGTTCATGCAAC+AGG + chr1.4:57934730-57934749 MS.gene39911:CDS 35.0%
! ATCCAATTTTTCTTCTGTGG+AGG - chr1.4:57935301-57935320 None:intergenic 35.0%
! ATTGCCACTTCTTGAACTTA+TGG + chr1.4:57934243-57934262 MS.gene39911:CDS 35.0%
! CATCTAGTTTGTCTACACTT+TGG + chr1.4:57932818-57932837 MS.gene39911:CDS 35.0%
! CATGAACATTTTCCAAAGTG+GGG - chr1.4:57934726-57934745 None:intergenic 35.0%
! GCATGAACATTTTCCAAAGT+GGG - chr1.4:57934727-57934746 None:intergenic 35.0%
! TGCATGAACATTTTCCAAAG+TGG - chr1.4:57934728-57934747 None:intergenic 35.0%
!! AAAAGCATTGGTTAGCAACT+AGG - chr1.4:57932955-57932974 None:intergenic 35.0%
!! GTTTGGTCTTTTACAATGGT+TGG - chr1.4:57933355-57933374 None:intergenic 35.0%
!! TTTTCCGTTATTTTCGTCAG+CGG - chr1.4:57934311-57934330 None:intergenic 35.0%
!!! AGTTATGTCCTTTTTTGGGA+AGG - chr1.4:57931179-57931198 None:intergenic 35.0%
!!! TGATTTTGATTCAACGATGC+TGG + chr1.4:57932093-57932112 MS.gene39911:CDS 35.0%
!!! TTCGCTTTTTTTCAGGTTCA+GGG - chr1.4:57935443-57935462 None:intergenic 35.0%
AAAGCCGCATTGAAGCTATA+TGG - chr1.4:57933109-57933128 None:intergenic 40.0%
AAATTAGAACCAGGAAAGCC+TGG - chr1.4:57934972-57934991 None:intergenic 40.0%
AACCTGAAAAAAAGCGAAGG+AGG + chr1.4:57935445-57935464 MS.gene39911:CDS 40.0%
AATCCAACATGAACCTTCAC+CGG - chr1.4:57931633-57931652 None:intergenic 40.0%
AATCTGCTCTCACATGTTTC+AGG + chr1.4:57934196-57934215 MS.gene39911:intron 40.0%
ACCTCGCCACTAAGTAAATA+AGG - chr1.4:57935100-57935119 None:intergenic 40.0%
AGATGGAATTGCAACACATG+TGG - chr1.4:57933227-57933246 None:intergenic 40.0%
AGATGGAGATGGAGATTTGT+TGG + chr1.4:57931416-57931435 MS.gene39911:CDS 40.0%
AGATTCAGATCATTCAGCTC+TGG - chr1.4:57934548-57934567 None:intergenic 40.0%
AGCCTCCACAGAAGAAAAAT+TGG + chr1.4:57935296-57935315 MS.gene39911:intron 40.0%
AGGTCAAGCAACTCTAGATT+TGG - chr1.4:57933799-57933818 None:intergenic 40.0%
AGTTACAATTGTGGACGTTG+TGG + chr1.4:57931153-57931172 MS.gene39911:CDS 40.0%
ATTGAAACTCACATCCAAGC+CGG - chr1.4:57934428-57934447 None:intergenic 40.0%
CAAAGTCAGGTAACAAAGTC+AGG + chr1.4:57934781-57934800 MS.gene39911:intron 40.0%
CAGTCCATAAGTTCAAGAAG+TGG - chr1.4:57934250-57934269 None:intergenic 40.0%
CGAATGCTTTCTCTTGTTCT+TGG + chr1.4:57933727-57933746 MS.gene39911:CDS 40.0%
CTCTAGATTTGGATAGCTTG+AGG - chr1.4:57933788-57933807 None:intergenic 40.0%
CTCTGGGCAGTTTAAGTATA+GGG - chr1.4:57934531-57934550 None:intergenic 40.0%
CTGAACCTGAAAAAAAGCGA+AGG + chr1.4:57935442-57935461 MS.gene39911:CDS 40.0%
CTGACTTTGTTACCTGACTT+TGG - chr1.4:57934783-57934802 None:intergenic 40.0%
GAAGGTTGTTCTAATCTAGG+GGG + chr1.4:57932781-57932800 MS.gene39911:CDS 40.0%
GATTCAGATCATTCAGCTCT+GGG - chr1.4:57934547-57934566 None:intergenic 40.0%
GGAAGGTTGTTCTAATCTAG+GGG + chr1.4:57932780-57932799 MS.gene39911:CDS 40.0%
GTAATACCCATTGATCCGAT+TGG - chr1.4:57932182-57932201 None:intergenic 40.0%
TAACATGGCAATACACCATC+AGG - chr1.4:57932474-57932493 None:intergenic 40.0%
TAGAACAACCTTCCATCTTG+AGG - chr1.4:57932774-57932793 None:intergenic 40.0%
TATTTCACAGACACCGCATT+TGG - chr1.4:57933408-57933427 None:intergenic 40.0%
TCAATCTCCACATCTAGATC+TGG - chr1.4:57931462-57931481 None:intergenic 40.0%
TGTGTCTTTACTGTGTGAAC+TGG + chr1.4:57935263-57935282 MS.gene39911:intron 40.0%
TTTATACTGCCTGCCAAATG+CGG + chr1.4:57933392-57933411 MS.gene39911:intron 40.0%
TTTGCCTGGGAATTTACGAT+GGG + chr1.4:57931491-57931510 MS.gene39911:CDS 40.0%
! AGAAATGTCCTGGGATTTTG+AGG + chr1.4:57931670-57931689 MS.gene39911:CDS 40.0%
! ATGCCCTAATCTGGAATCTA+TGG + chr1.4:57932132-57932151 MS.gene39911:CDS 40.0%
! ATTTACGATGGGAGGTTTTG+AGG + chr1.4:57931502-57931521 MS.gene39911:CDS 40.0%
! CGGGTTCCTTATTTACTTAG+TGG + chr1.4:57935091-57935110 MS.gene39911:CDS 40.0%
! CTTCTTGAACTTATGGACTG+TGG + chr1.4:57934250-57934269 MS.gene39911:CDS 40.0%
! TCCTTATTTACTTAGTGGCG+AGG + chr1.4:57935096-57935115 MS.gene39911:CDS 40.0%
! TCTAGAACCAGATCTAGATG+TGG + chr1.4:57931452-57931471 MS.gene39911:CDS 40.0%
! TGATAATGCAGGGATGAACT+AGG + chr1.4:57932715-57932734 MS.gene39911:intron 40.0%
! TTTGAGGCTTTCGCTTAGAA+TGG + chr1.4:57931686-57931705 MS.gene39911:CDS 40.0%
!! AGATGGAGATTTGTTGGATC+TGG + chr1.4:57931422-57931441 MS.gene39911:CDS 40.0%
!! TTGTCAGGATTTGTTAGTCG+AGG + chr1.4:57934753-57934772 MS.gene39911:CDS 40.0%
!!! ATCCTCCTTCGCTTTTTTTC+AGG - chr1.4:57935450-57935469 None:intergenic 40.0%
!!! CTTCGCTTTTTTTCAGGTTC+AGG - chr1.4:57935444-57935463 None:intergenic 40.0%
!!! GCAACTTTTGTTTTGTCCCA+CGG + chr1.4:57932526-57932545 MS.gene39911:intron 40.0%
!!! TCGCTTTTTTTCAGGTTCAG+GGG - chr1.4:57935442-57935461 None:intergenic 40.0%
!!! TGCTTTTTCATGCCCTAATC+TGG + chr1.4:57932123-57932142 MS.gene39911:CDS 40.0%
AACTTTGCCTTCATCAGCAG+AGG + chr1.4:57932502-57932521 MS.gene39911:intron 45.0%
ACTTCCGTGTAATGTGCTTG+TGG + chr1.4:57935476-57935495 MS.gene39911:CDS 45.0%
AGATCTGGCATAAGTGACAG+TGG + chr1.4:57934027-57934046 MS.gene39911:intron 45.0%
AGTGAAATCTCTCTCAGCTG+CGG - chr1.4:57932999-57933018 None:intergenic 45.0%
CAGTCCACAAGCACATTACA+CGG - chr1.4:57935483-57935502 None:intergenic 45.0%
CATAGTTATGAGGTCAGTGC+TGG - chr1.4:57933045-57933064 None:intergenic 45.0%
CCAACCGCTGACGAAAATAA+CGG + chr1.4:57934304-57934323 MS.gene39911:CDS 45.0%
CTCAAAAGCCTCAAGATGGA+AGG + chr1.4:57932763-57932782 MS.gene39911:CDS 45.0%
GGCGAATGGTTATCTATAGC+AGG - chr1.4:57935037-57935056 None:intergenic 45.0%
GGCTTTCGCTTAGAATGGAA+AGG + chr1.4:57931691-57931710 MS.gene39911:CDS 45.0%
GGTTGCTGTCATAACAGATC+TGG + chr1.4:57934012-57934031 MS.gene39911:intron 45.0%
GTACAGATTCATACCCACTG+AGG - chr1.4:57933819-57933838 None:intergenic 45.0%
GTTTGCCTGGGAATTTACGA+TGG + chr1.4:57931490-57931509 MS.gene39911:CDS 45.0%
TAGAGTTGCTTGACCTCAGT+GGG + chr1.4:57933803-57933822 MS.gene39911:CDS 45.0%
TATCGTTTCTGTACCGTCTG+CGG + chr1.4:57931263-57931282 MS.gene39911:CDS 45.0%
TCACATTAGGGCAAAGAGCA+AGG - chr1.4:57934101-57934120 None:intergenic 45.0%
TCTACCTGATGGCTCCAAAA+GGG + chr1.4:57935066-57935085 MS.gene39911:CDS 45.0%
TCTGCACTCTCTGTCTAAGA+TGG + chr1.4:57932849-57932868 MS.gene39911:CDS 45.0%
TCTTTGACACCGCAACCAAT+CGG + chr1.4:57932164-57932183 MS.gene39911:CDS 45.0%
TGTTCATGCAACAGGTTGTC+AGG + chr1.4:57934738-57934757 MS.gene39911:CDS 45.0%
! AGGCTTGACGATAAAGCGTT+TGG + chr1.4:57931375-57931394 MS.gene39911:CDS 45.0%
! ATAAGGAACCCGAACCCTTT+TGG - chr1.4:57935083-57935102 None:intergenic 45.0%
! CTCTTAGTGCTGCTCAATTG+AGG + chr1.4:57933147-57933166 MS.gene39911:CDS 45.0%
! GACGATAAAGCGTTTGGTGA+TGG + chr1.4:57931381-57931400 MS.gene39911:CDS 45.0%
! GCTCTGGGCAGTTTAAGTAT+AGG - chr1.4:57934532-57934551 None:intergenic 45.0%
! TCACGCTTCTTTTGTCTCCA+AGG - chr1.4:57933880-57933899 None:intergenic 45.0%
! TGGAGACAAAAGAAGCGTGA+TGG + chr1.4:57933880-57933899 MS.gene39911:intron 45.0%
! TTTTGTATCGGAGCTTTCGG+CGG - chr1.4:57931115-57931134 None:intergenic 45.0%
!! AAAGCGTTTGGTGATGGTGA+TGG + chr1.4:57931387-57931406 MS.gene39911:CDS 45.0%
!! GATGTGGAGATTGATTCGAG+CGG + chr1.4:57931468-57931487 MS.gene39911:CDS 45.0%
!! TTTGGTGATGGTGATGGAGA+TGG + chr1.4:57931393-57931412 MS.gene39911:CDS 45.0%
ACCGCAACCAATCGGATCAA+TGG + chr1.4:57932172-57932191 MS.gene39911:CDS 50.0%
ACCTCCCATCGTAAATTCCC+AGG - chr1.4:57931498-57931517 None:intergenic 50.0%
AGCGAAAGCCTCAAAATCCC+AGG - chr1.4:57931681-57931700 None:intergenic 50.0%
AGTCGAGGCTATCCAAAGTC+AGG + chr1.4:57934768-57934787 MS.gene39911:CDS 50.0%
AGTTGCACCTCTGCTGATGA+AGG - chr1.4:57932512-57932531 None:intergenic 50.0%
CCGCAACCAATCGGATCAAT+GGG + chr1.4:57932173-57932192 MS.gene39911:CDS 50.0%
CGATGCTGCAGAAATGTCCT+GGG + chr1.4:57931661-57931680 MS.gene39911:CDS 50.0%
CGTTGTGGCCTTCCCAAAAA+AGG + chr1.4:57931168-57931187 MS.gene39911:CDS 50.0%
CTAGAGTTGCTTGACCTCAG+TGG + chr1.4:57933802-57933821 MS.gene39911:CDS 50.0%
CTGATGGCTCCAAAAGGGTT+CGG + chr1.4:57935071-57935090 MS.gene39911:CDS 50.0%
CTGCTCTCACATGTTTCAGG+TGG + chr1.4:57934199-57934218 MS.gene39911:intron 50.0%
GACGGAGGAGTTGAAGCTTA+GGG + chr1.4:57931605-57931624 MS.gene39911:CDS 50.0%
GATGGAGATGGAGATGGAGA+TGG + chr1.4:57931405-57931424 MS.gene39911:CDS 50.0%
GCACTGGACTTGATCTGTTG+AGG + chr1.4:57931355-57931374 MS.gene39911:CDS 50.0%
GCGGTTGGATCTGGGAAATT+AGG - chr1.4:57934292-57934311 None:intergenic 50.0%
GGAGTTGAAGCTTAGGGTTC+CGG + chr1.4:57931611-57931630 MS.gene39911:CDS 50.0%
GGCATAAGTGACAGTGGCAT+TGG + chr1.4:57934033-57934052 MS.gene39911:CDS 50.0%
GTCTACCTGATGGCTCCAAA+AGG + chr1.4:57935065-57935084 MS.gene39911:CDS 50.0%
GTTCCGGTGAAGGTTCATGT+TGG + chr1.4:57931627-57931646 MS.gene39911:CDS 50.0%
TAACGATGAATCTACCGGCG+TGG - chr1.4:57931241-57931260 None:intergenic 50.0%
TCGATGCTGCAGAAATGTCC+TGG + chr1.4:57931660-57931679 MS.gene39911:CDS 50.0%
TGATGGCTCCAAAAGGGTTC+GGG + chr1.4:57935072-57935091 MS.gene39911:CDS 50.0%
TTTCGTCAGCGGTTGGATCT+GGG - chr1.4:57934300-57934319 None:intergenic 50.0%
TTTGACGGTCTTGACGATCG+AGG + chr1.4:57931333-57931352 MS.gene39911:CDS 50.0%
! ACACGAAGGCTTTAGCAGCT+AGG - chr1.4:57932607-57932626 None:intergenic 50.0%
! CCCATTGATCCGATTGGTTG+CGG - chr1.4:57932176-57932195 None:intergenic 50.0%
! GAAGGTGTGTAAGGGATGGA+GGG + chr1.4:57931557-57931576 MS.gene39911:CDS 50.0%
! TAAGCTCTAGCTGCACACGA+AGG - chr1.4:57932621-57932640 None:intergenic 50.0%
! TTGATTCGAGCGGTTTGCCT+GGG + chr1.4:57931478-57931497 MS.gene39911:CDS 50.0%
! TTTTCGTCAGCGGTTGGATC+TGG - chr1.4:57934301-57934320 None:intergenic 50.0%
!! ATTGATTCGAGCGGTTTGCC+TGG + chr1.4:57931477-57931496 MS.gene39911:CDS 50.0%
!! CCGTTATTTTCGTCAGCGGT+TGG - chr1.4:57934307-57934326 None:intergenic 50.0%
!! GATGGTGATGGAGATGGAGA+TGG + chr1.4:57931399-57931418 MS.gene39911:CDS 50.0%
!!! GGTCAGTGCTGGCATTTTCT+TGG - chr1.4:57933034-57933053 None:intergenic 50.0%
!!! TACGATGGGAGGTTTTGAGG+AGG + chr1.4:57931505-57931524 MS.gene39911:CDS 50.0%
CGACGGAGGAGTTGAAGCTT+AGG + chr1.4:57931604-57931623 MS.gene39911:CDS 55.0%
CTCAGTTTGTGGGGTTGCAC+CGG + chr1.4:57934406-57934425 MS.gene39911:CDS 55.0%
GAAGCTTAGGGTTCCGGTGA+AGG + chr1.4:57931617-57931636 MS.gene39911:CDS 55.0%
GAGGAAGCTGTGGAAAGCGA+CGG + chr1.4:57931587-57931606 MS.gene39911:CDS 55.0%
GCCTGGGAATTTACGATGGG+AGG + chr1.4:57931494-57931513 MS.gene39911:CDS 55.0%
GTCAACCACCGTCGAATCTC+CGG + chr1.4:57931298-57931317 MS.gene39911:CDS 55.0%
GTGTAAGGGATGGAGGGAGA+CGG + chr1.4:57931563-57931582 MS.gene39911:CDS 55.0%
GTTGCTTCAGTGCCCCACTT+TGG + chr1.4:57934711-57934730 MS.gene39911:CDS 55.0%
TCACAGACACCGCATTTGGC+AGG - chr1.4:57933404-57933423 None:intergenic 55.0%
TTCTGTACCGTCTGCGGTCT+CGG + chr1.4:57931269-57931288 MS.gene39911:CDS 55.0%
! CGAAGGTGTGTAAGGGATGG+AGG + chr1.4:57931556-57931575 MS.gene39911:CDS 55.0%
! GTGGTGGTTGTGGTGGAAAC+TGG - chr1.4:57931216-57931235 None:intergenic 55.0%
!!! CGAACCCTTTTGGAGCCATC+AGG - chr1.4:57935073-57935092 None:intergenic 55.0%
!!! GGTTTTGAGGAGGTTACCGC+CGG + chr1.4:57931515-57931534 MS.gene39911:CDS 55.0%
ACCGCCGGCGGGATTGTTAT+CGG + chr1.4:57931530-57931549 MS.gene39911:CDS 60.0%
CGAATCACCGAGACCGCAGA+CGG - chr1.4:57931279-57931298 None:intergenic 60.0%
CGATGAATCTACCGGCGTGG+TGG - chr1.4:57931238-57931257 None:intergenic 60.0%
CGGCGAGCGCTTTCGTTTGA+CGG + chr1.4:57931318-57931337 MS.gene39911:CDS 60.0%
GAAGCTGTGGAAAGCGACGG+AGG + chr1.4:57931590-57931609 MS.gene39911:CDS 60.0%
GGGATTGTTATCGGCGGCGA+AGG + chr1.4:57931539-57931558 MS.gene39911:CDS 60.0%
GGTCTTGACGATCGAGGCAC+TGG + chr1.4:57931339-57931358 MS.gene39911:CDS 60.0%
TGAATCTACCGGCGTGGTGG+TGG - chr1.4:57931235-57931254 None:intergenic 60.0%
TTTGAGGAGGTTACCGCCGG+CGG + chr1.4:57931518-57931537 MS.gene39911:CDS 60.0%
! ATCGGCGGCGAAGGTGTGTA+AGG + chr1.4:57931548-57931567 MS.gene39911:CDS 60.0%
! CGGCGAAGGTGTGTAAGGGA+TGG + chr1.4:57931553-57931572 MS.gene39911:CDS 60.0%
! TCGGCGGCGAAGGTGTGTAA+GGG + chr1.4:57931549-57931568 MS.gene39911:CDS 60.0%
!! CGTCAAACGAAAGCGCTCGC+CGG - chr1.4:57931320-57931339 None:intergenic 60.0%
!! TTTGTGGGGTTGCACCGGCT+TGG + chr1.4:57934411-57934430 MS.gene39911:CDS 60.0%
AGCGCTCGCCGGAGATTCGA+CGG - chr1.4:57931309-57931328 None:intergenic 65.0%
CACAACCACCACCACCACGC+CGG + chr1.4:57931224-57931243 MS.gene39911:CDS 65.0%
GCCGATAACAATCCCGCCGG+CGG - chr1.4:57931534-57931553 None:intergenic 65.0%
GCCGCCGATAACAATCCCGC+CGG - chr1.4:57931537-57931556 None:intergenic 65.0%
GCCGCGTCGCAATCTTCACG+CGG + chr1.4:57931081-57931100 MS.gene39911:CDS 65.0%
GCCGCGTGAAGATTGCGACG+CGG - chr1.4:57931085-57931104 None:intergenic 65.0%
GCCGGCGGGATTGTTATCGG+CGG + chr1.4:57931533-57931552 MS.gene39911:CDS 65.0%
GCGTCGCAATCTTCACGCGG+CGG + chr1.4:57931084-57931103 MS.gene39911:CDS 65.0%
GCGTGAAGATTGCGACGCGG+CGG - chr1.4:57931082-57931101 None:intergenic 65.0%
TTGAGGAGGTTACCGCCGGC+GGG + chr1.4:57931519-57931538 MS.gene39911:CDS 65.0%
!! ATCTACCGGCGTGGTGGTGG+TGG - chr1.4:57931232-57931251 None:intergenic 65.0%
!! CGTGGTGGTGGTGGTTGTGG+TGG - chr1.4:57931223-57931242 None:intergenic 65.0%
AGGGATGGAGGGAGACGGCG+AGG + chr1.4:57931568-57931587 MS.gene39911:CDS 70.0%
GCTCGCCGGAGATTCGACGG+TGG - chr1.4:57931306-57931325 None:intergenic 70.0%
GGGAGACGGCGAGGAAGCTG+TGG + chr1.4:57931577-57931596 MS.gene39911:CDS 70.0%
!! CGGCGTGGTGGTGGTGGTTG+TGG - chr1.4:57931226-57931245 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 57931060 57935503 57931060 ID=MS.gene39911
chr1.4 mRNA 57931060 57935503 57931060 ID=MS.gene39911.t1;Parent=MS.gene39911
chr1.4 exon 57931060 57931712 57931060 ID=MS.gene39911.t1.exon1;Parent=MS.gene39911.t1
chr1.4 CDS 57931060 57931712 57931060 ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1
chr1.4 exon 57932093 57932194 57932093 ID=MS.gene39911.t1.exon2;Parent=MS.gene39911.t1
chr1.4 CDS 57932093 57932194 57932093 ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1
chr1.4 exon 57932726 57932870 57932726 ID=MS.gene39911.t1.exon3;Parent=MS.gene39911.t1
chr1.4 CDS 57932726 57932870 57932726 ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1
chr1.4 exon 57932984 57933168 57932984 ID=MS.gene39911.t1.exon4;Parent=MS.gene39911.t1
chr1.4 CDS 57932984 57933168 57932984 ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1
chr1.4 exon 57933720 57933824 57933720 ID=MS.gene39911.t1.exon5;Parent=MS.gene39911.t1
chr1.4 CDS 57933720 57933824 57933720 ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1
chr1.4 exon 57934029 57934126 57934029 ID=MS.gene39911.t1.exon6;Parent=MS.gene39911.t1
chr1.4 CDS 57934029 57934126 57934029 ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1
chr1.4 exon 57934218 57934435 57934218 ID=MS.gene39911.t1.exon7;Parent=MS.gene39911.t1
chr1.4 CDS 57934218 57934435 57934218 ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1
chr1.4 exon 57934527 57934593 57934527 ID=MS.gene39911.t1.exon8;Parent=MS.gene39911.t1
chr1.4 CDS 57934527 57934593 57934527 ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1
chr1.4 exon 57934704 57934789 57934704 ID=MS.gene39911.t1.exon9;Parent=MS.gene39911.t1
chr1.4 CDS 57934704 57934789 57934704 ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1
chr1.4 exon 57935019 57935117 57935019 ID=MS.gene39911.t1.exon10;Parent=MS.gene39911.t1
chr1.4 CDS 57935019 57935117 57935019 ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1
chr1.4 exon 57935438 57935503 57935438 ID=MS.gene39911.t1.exon11;Parent=MS.gene39911.t1
chr1.4 CDS 57935438 57935503 57935438 ID=cds.MS.gene39911.t1;Parent=MS.gene39911.t1
Gene Sequence

>MS.gene39911

ATGCAACACTCAATTAACGCCGCCGCGTCGCAATCTTCACGCGGCGGCGACACCGCCGAAAGCTCCGATACAAAAAAAGGAAAGAAACGTGGTAGTTACAATTGTGGACGTTGTGGCCTTCCCAAAAAAGGACATAACTGTAATATCAAAACGCCAGTTTCCACCACAACCACCACCACCACGCCGGTAGATTCATCGTTATCTATCGTTTCTGTACCGTCTGCGGTCTCGGTGATTCGTCAACCACCGTCGAATCTCCGGCGAGCGCTTTCGTTTGACGGTCTTGACGATCGAGGCACTGGACTTGATCTGTTGAGGCTTGACGATAAAGCGTTTGGTGATGGTGATGGAGATGGAGATGGAGATGGAGATTTGTTGGATCTGGAACTAGATCTAGAACCAGATCTAGATGTGGAGATTGATTCGAGCGGTTTGCCTGGGAATTTACGATGGGAGGTTTTGAGGAGGTTACCGCCGGCGGGATTGTTATCGGCGGCGAAGGTGTGTAAGGGATGGAGGGAGACGGCGAGGAAGCTGTGGAAAGCGACGGAGGAGTTGAAGCTTAGGGTTCCGGTGAAGGTTCATGTTGGATTTGTTGCGTCGATGCTGCAGAAATGTCCTGGGATTTTGAGGCTTTCGCTTAGAATGGAAAGGTGTGAAATTTTCCAGATCCACGTTAAGAATAAGATTAATTGATGAATTATATAACATTGACTAATTTAATCATGAATTAATGGTTAAGTATTGTAAAATTATATAATGCATGCGTAAATTGAAATATGTGTGTTGATTTCTGAAGATCGATGCACAAAAAAATAGGTATAATCTGAATCTCAATTTATTAATTAATTGGTTTGGTTATAAAAGGATGATGAAAAAAATTGGATCTTATAAATGAGATTGTGAATCTGATTTGTTTGAAAAAATTTGTATTGTATTATTTATGTTCTAAGATTTTTACTGTATTATTCATATCTTCTAAGATTTGTACTGTATTATTTATGTTATGAATCCGATTTGTTTCATGTTGCAGTGATTTTGATTCAACGATGCTGGCTTGCATTGCTTTTTCATGCCCTAATCTGGAATCTATGGAGATCTCAGTCTTTGACACCGCAACCAATCGGATCAATGGGTATTACTCACGCTCTTGTCTTTTAATTTTTGAAACCCTTTTTTTTGCTGCTTCTATGTGTAATGAGTTTTCGGTTGTTGAACATCTAAGTATGCAATTAATGTTGGATCTAATTTAATTTTATACAATGTGAAAGTGAGGCAAATAAGTTGTTTAGTCAAGACACAATGACTAATTATTTCTTGTATGATTCATAGATTTTAGATCCGTGTTTGGCATTATTAATTGGTTAAATGTTGTTTATCGTTCAAATGCCATGATGTAAATGGATGAAATCCTGATGGTGTATTGCCATGTTATAGATTGTAACTTTGCCTTCATCAGCAGAGGTGCAACTTTTGTTTTGTCCCACGGAAGATTTAAATTTCAGATATTTTTTTCTTCAGATTTCTGTTTAATTTCTTAAACGCCTAGCTGCTAAAGCCTTCGTGTGCAGCTAGAGCTTACATTATTAGCATATATGCATGGTCAAGTAAAGAATAATGCTTTCTGCTGATTAGCTTTATATGATGTTCAACTATGATAATGCAGGGATGAACTAGGCCGATTTGTTGCTGACAAAAGAAATCTCAAAAGCCTCAAGATGGAAGGTTGTTCTAATCTAGGGGGTTTTGTCCTCTCTTCATCTAGTTTGTCTACACTTTGGCTATCTGATCTGCACTCTCTGTCTAAGATGGTGAATATTATCTTTCTTTGTTGTTCTTTAATGTGATGTGATTGATATTGATTATACCATGAGATTGCATTCATATTGAATCCTAGTTGCTAACCAATGCTTTTAAATTGTAGGTATTTAACTGTCCGCAGCTGAGAGAGATTTCACTTGAATTTTCTTGCCAAGAAAATGCCAGCACTGACCTCATAACTATGATTGAAGGATTGGGAAGAAGTTGCTTGAAATTACAAAACATCCATATAGCTTCAATGCGGCTTTCTCATGCTGCTGTGCTTGCTCTTAGTGCTGCTCAATTGAGGTTTGCCTTTTATTTGGCAATTTATTGTCTGTTTTCATGTTGTTATTGGCATTAGCCACATGTGTTGCAATTCCATCTGTTATAAAAGTTTGTAGTCTATGATGTTTTGAACTTTCTGTTTCTATGAATTTATAATGTTTTTAACTTTCTTTTTCTATGTATTTGCGCTATCTTTTGTATGAACCAACCATTGTAAAAGACCAAACATAGGATCATGTCGAATTTTATACTGCCTGCCAAATGCGGTGTCTGTGAAATAATATGATACCAATTATTTTAACTACAATGCTCAACATGAATACACACTAATAAAAATTAGGCATTGATAAAAACTTGATTTTATTCCCAAAGTTATGAGTATCCGAAATTCCGATCTTTTAACTGTTGGACTAAAGGATATATATTTATCCGAAACTCATGGTGTGCATAATCAGTGAAAATGTCTTTCTTAATTGTGCTTTCTTCTGTTTTTAAGAAATGAGTTAATGCTACTAACATCCCACTCAGTTGAAGATATTAATGAAATTCTGTCCAAATATACAATTAATCAGGGGGCTGCGAATGCTTTCTCTTGTTCTTGGATCTGAATTAACTGATGCATCTGTTGCTGCAATTGCCTCAAGCTATCCAAATCTAGAGTTGCTTGACCTCAGTGGGTATGAATCTGTACCGATTCTTATTGACGTTGAAGTTTTTAAAATGTATTTGCCTTGGAGACAAAAGAAGCGTGATGGAACTCAATACCATAGATAAATTATAATCAAAGTTTTAGTATAAGAACTTATATTTCAAATACATATTTTTTTAATTACCATGTCTTTGTTTAAGAAATCAAGTTTGATGGGTTGCTGTCATAACAGATCTGGCATAAGTGACAGTGGCATTGGAATGATTTGCAACGTATTCCCTGAAACACTTAAAAGACTTCTCCTTGCTCTTTGCCCTAATGTGACCTCAAGTAATCTTTTGTCACATCCTCAATTATTTCACAAAACTCACACATTATTAGATTATGTTTGTTTATACTAATCTGCTCTCACATGTTTCAGGTGGCATTCAATTTGCTACAGCTCAATTGCCACTTCTTGAACTTATGGACTGTGGCATGACCATATGTGATCCTAATTTCCCAGATCCAACCGCTGACGAAAATAACGGAAAATCACAGAAAACATCCAGTGCAAATCTACAGCATATAAACCAAAAGCTAATCATCAAGCATAGCCGTCTAAAGAAACTCAGTTTGTGGGGTTGCACCGGCTTGGATGTGAGTTTCAATTTTCACTAGACTGATGCCATTAATGCATATTCTTTTTTAGGCTTCTAATCTTTATAGTTCTTTTCAAAATTATTTGCAGGCCCTATACTTAAACTGCCCAGAGCTGAATGATCTGAATCTAAATTCTTGTAGAAATCTGCATTCAGGTTTGCCCCTTCATGTTCCTGTTTTGTAACTATCAAATAATTTGTTGCAACTTACCAGGACTTCCTTTTAAATTGTATGATTGATTATTTTCATTTATTAATTGGTTCAGAGAGGCTGTTGCTTCAGTGCCCCACTTTGGAAAATGTTCATGCAACAGGTTGTCAGGATTTGTTAGTCGAGGCTATCCAAAGTCAGGTAACAAAGTCAGGTTGTCCTTTCTTGTTTCAGTAGTGTTCTGTAATTAATAAATCAATGTTCTCTTTGAGATGTTAGCTTTATAGATTGCTTGTAGATATGAAGAACAAGATCCCTTGAACTAATTTTCTCTGCATGAATAATATATTTATTATGATCTAGTTTGTTTGATATTTATTCCAGGCTTTCCTGGTTCTAATTTAAAATATCCTTTATGATTTGTTTGTAGGTCCGCAATGTTTTTCCTGCTATAGATAACCATTCGCCTTCTAAACGTCTACCTGATGGCTCCAAAAGGGTTCGGGTTCCTTATTTACTTAGTGGCGAGGTAAAGCTAAAAGAAATTATATTATGCATATTTTAAAAACATATTGTGTTTATCTAGGATGGGAAACTTTAAAAATAATATTTACTAAGTAGCTATCTCTAAATCTAGTCTAAAGTAAGTTTGTGTATCAATGGCATCAAACAATTGTGTCTTTACTGTGTGAACTGGTTTTGTTTCAAGCCTCCACAGAAGAAAAATTGGATTTTCTAGGGTAGTCTTTTCAAGTCATTCTGTACATAGTTACAGTCTTGCATGAATCCGATTTTATTTTGAATGTGAAAATCTAACATACAATATTATTTCTTATTTTTTCTTTGTAGTCCCCTGAACCTGAAAAAAAGCGAAGGAGGATCGAGAGACTTCCGTGTAATGTGCTTGTGGACTGA

Protein sequence

>MS.gene39911.t1

MQHSINAAASQSSRGGDTAESSDTKKGKKRGSYNCGRCGLPKKGHNCNIKTPVSTTTTTTTPVDSSLSIVSVPSAVSVIRQPPSNLRRALSFDGLDDRGTGLDLLRLDDKAFGDGDGDGDGDGDLLDLELDLEPDLDVEIDSSGLPGNLRWEVLRRLPPAGLLSAAKVCKGWRETARKLWKATEELKLRVPVKVHVGFVASMLQKCPGILRLSLRMESDFDSTMLACIAFSCPNLESMEISVFDTATNRINGDELGRFVADKRNLKSLKMEGCSNLGGFVLSSSSLSTLWLSDLHSLSKMVFNCPQLREISLEFSCQENASTDLITMIEGLGRSCLKLQNIHIASMRLSHAAVLALSAAQLRGLRMLSLVLGSELTDASVAAIASSYPNLELLDLSGSGISDSGIGMICNVFPETLKRLLLALCPNVTSSGIQFATAQLPLLELMDCGMTICDPNFPDPTADENNGKSQKTSSANLQHINQKLIIKHSRLKKLSLWGCTGLDALYLNCPELNDLNLNSCRNLHSERLLLQCPTLENVHATGCQDLLVEAIQSQVRNVFPAIDNHSPSKRLPDGSKRVRVPYLLSGESPEPEKKRRRIERLPCNVLVD