Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49349.t1 | XP_013468582.1 | 98 | 609 | 8 | 1 | 1 | 605 | 1 | 609 | 2.80E-296 | 1027.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49349.t1 | Q8W104 | 54.5 | 606 | 226 | 8 | 18 | 603 | 17 | 592 | 3.3e-168 | 593.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49349.t1 | A0A072VKR1 | 98.0 | 609 | 8 | 1 | 1 | 605 | 1 | 609 | 2.0e-296 | 1027.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049251 | MS.gene49349 | 0.826415 | 2.75E-54 | -1.69E-46 |
| MS.gene049298 | MS.gene49349 | 0.84088 | 6.66E-58 | -1.69E-46 |
| MS.gene050710 | MS.gene49349 | 0.810471 | 1.13E-50 | -1.69E-46 |
| MS.gene050874 | MS.gene49349 | 0.835086 | 2.06E-56 | -1.69E-46 |
| MS.gene050875 | MS.gene49349 | 0.859794 | 3.23E-63 | -1.69E-46 |
| MS.gene051025 | MS.gene49349 | 0.800423 | 1.45E-48 | -1.69E-46 |
| MS.gene051439 | MS.gene49349 | 0.801689 | 8.00E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene49349 | -0.805649 | 1.21E-49 | -1.69E-46 |
| MS.gene051914 | MS.gene49349 | 0.893215 | 7.73E-75 | -1.69E-46 |
| MS.gene052143 | MS.gene49349 | 0.80907 | 2.27E-50 | -1.69E-46 |
| MS.gene052169 | MS.gene49349 | 0.830975 | 2.17E-55 | -1.69E-46 |
| MS.gene052209 | MS.gene49349 | 0.824285 | 8.77E-54 | -1.69E-46 |
| MS.gene052308 | MS.gene49349 | 0.861895 | 7.44E-64 | -1.69E-46 |
| MS.gene052367 | MS.gene49349 | 0.804148 | 2.48E-49 | -1.69E-46 |
| MS.gene053108 | MS.gene49349 | 0.832153 | 1.11E-55 | -1.69E-46 |
| MS.gene053173 | MS.gene49349 | 0.860735 | 1.68E-63 | -1.69E-46 |
| MS.gene053348 | MS.gene49349 | 0.819706 | 1.01E-52 | -1.69E-46 |
| MS.gene054018 | MS.gene49349 | 0.84839 | 6.32E-60 | -1.69E-46 |
| MS.gene054459 | MS.gene49349 | 0.80526 | 1.45E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene49349 | 0.86238 | 5.28E-64 | -1.69E-46 |
| MS.gene054593 | MS.gene49349 | 0.855086 | 7.99E-62 | -1.69E-46 |
| MS.gene054633 | MS.gene49349 | 0.876112 | 1.81E-68 | -1.69E-46 |
| MS.gene054662 | MS.gene49349 | 0.898583 | 4.60E-77 | -1.69E-46 |
| MS.gene054941 | MS.gene49349 | 0.850036 | 2.20E-60 | -1.69E-46 |
| MS.gene055308 | MS.gene49349 | 0.83925 | 1.77E-57 | -1.69E-46 |
| MS.gene055578 | MS.gene49349 | 0.838695 | 2.47E-57 | -1.69E-46 |
| MS.gene055616 | MS.gene49349 | 0.826983 | 2.01E-54 | -1.69E-46 |
| MS.gene055617 | MS.gene49349 | 0.823751 | 1.17E-53 | -1.69E-46 |
| MS.gene056041 | MS.gene49349 | 0.824437 | 8.07E-54 | -1.69E-46 |
| MS.gene056387 | MS.gene49349 | -0.807581 | 4.71E-50 | -1.69E-46 |
| MS.gene05640 | MS.gene49349 | 0.880926 | 3.67E-70 | -1.69E-46 |
| MS.gene056528 | MS.gene49349 | 0.804947 | 1.69E-49 | -1.69E-46 |
| MS.gene05652 | MS.gene49349 | 0.867263 | 1.56E-65 | -1.69E-46 |
| MS.gene056618 | MS.gene49349 | 0.819067 | 1.41E-52 | -1.69E-46 |
| MS.gene057101 | MS.gene49349 | 0.816185 | 6.30E-52 | -1.69E-46 |
| MS.gene05732 | MS.gene49349 | 0.807503 | 4.90E-50 | -1.69E-46 |
| MS.gene057367 | MS.gene49349 | 0.880866 | 3.86E-70 | -1.69E-46 |
| MS.gene057458 | MS.gene49349 | 0.822657 | 2.11E-53 | -1.69E-46 |
| MS.gene057669 | MS.gene49349 | 0.855393 | 6.50E-62 | -1.69E-46 |
| MS.gene058128 | MS.gene49349 | 0.873223 | 1.74E-67 | -1.69E-46 |
| MS.gene058418 | MS.gene49349 | 0.809173 | 2.16E-50 | -1.69E-46 |
| MS.gene058776 | MS.gene49349 | 0.808994 | 2.36E-50 | -1.69E-46 |
| MS.gene058853 | MS.gene49349 | 0.876111 | 1.81E-68 | -1.69E-46 |
| MS.gene05926 | MS.gene49349 | 0.851525 | 8.39E-61 | -1.69E-46 |
| MS.gene059553 | MS.gene49349 | 0.816809 | 4.57E-52 | -1.69E-46 |
| MS.gene05960 | MS.gene49349 | 0.842685 | 2.22E-58 | -1.69E-46 |
| MS.gene059616 | MS.gene49349 | 0.856466 | 3.16E-62 | -1.69E-46 |
| MS.gene060291 | MS.gene49349 | 0.873237 | 1.72E-67 | -1.69E-46 |
| MS.gene06080 | MS.gene49349 | 0.841028 | 6.09E-58 | -1.69E-46 |
| MS.gene06093 | MS.gene49349 | 0.896658 | 2.99E-76 | -1.69E-46 |
| MS.gene061260 | MS.gene49349 | 0.822503 | 2.29E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49349.t1 | MTR_1g070515 | 97.865 | 609 | 9 | 1 | 1 | 605 | 1 | 609 | 0.0 | 1204 |
| MS.gene49349.t1 | MTR_1g070515 | 96.970 | 561 | 13 | 1 | 1 | 557 | 1 | 561 | 0.0 | 1093 |
| MS.gene49349.t1 | MTR_2g066740 | 80.870 | 115 | 20 | 2 | 117 | 230 | 34 | 147 | 9.51e-54 | 183 |
| MS.gene49349.t1 | MTR_0878s0020 | 89.535 | 86 | 9 | 0 | 130 | 215 | 1 | 86 | 9.02e-46 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49349.t1 | AT3G54650 | 58.893 | 596 | 195 | 9 | 28 | 603 | 27 | 592 | 0.0 | 642 |
Find 152 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATGCTTTCTCTTGTTCT+TGG | 0.137595 | 1.1:+53143777 | MS.gene49349:CDS |
| ATTGCCACTTCTTGAACTTA+TGG | 0.229544 | 1.1:+53144293 | MS.gene49349:CDS |
| AGATTACTTGAGGTCACATT+AGG | 0.296935 | 1.1:-53144161 | None:intergenic |
| ATGCCCTAATCTGGAATCTA+TGG | 0.302684 | 1.1:+53142182 | MS.gene49349:CDS |
| TCTTGTAGAAATCTGCATTC+AGG | 0.308829 | 1.1:+53144622 | MS.gene49349:CDS |
| ATAAGGAACCCGAACCCTTT+TGG | 0.310964 | 1.1:-53145130 | None:intergenic |
| TATGCTTGATGATTAGCTTT+TGG | 0.316735 | 1.1:-53144419 | None:intergenic |
| ACCTCGCCACTAAGTAAATA+AGG | 0.317400 | 1.1:-53145147 | None:intergenic |
| GGAGTTGAAGCTTAGGGTTC+CGG | 0.327873 | 1.1:+53141661 | MS.gene49349:CDS |
| CGGCGAGCGCTTTCGTTTGA+CGG | 0.335154 | 1.1:+53141374 | MS.gene49349:CDS |
| ACCGCCGGCGGGATTGTTAT+CGG | 0.335562 | 1.1:+53141580 | MS.gene49349:CDS |
| GTGGTGGTTGTGGTGGAAAC+TGG | 0.336712 | 1.1:-53141269 | None:intergenic |
| ATGGAAGGTTGTTCTAATCT+AGG | 0.345750 | 1.1:+53142828 | MS.gene49349:CDS |
| TTCTGTACCGTCTGCGGTCT+CGG | 0.351169 | 1.1:+53141325 | MS.gene49349:CDS |
| CTGACTTTGTTACCTGACTT+TGG | 0.352864 | 1.1:-53144830 | None:intergenic |
| CGGGTTCCTTATTTACTTAG+TGG | 0.355932 | 1.1:+53145141 | MS.gene49349:CDS |
| TTGGAAAATGTTCATGCAAC+AGG | 0.363021 | 1.1:+53144780 | MS.gene49349:CDS |
| CATAACTATGATTGAAGGAT+TGG | 0.367458 | 1.1:+53143105 | MS.gene49349:CDS |
| GATTGATTCGAGCGGTTTGC+CGG | 0.370129 | 1.1:+53141526 | MS.gene49349:CDS |
| CTCTGGGCAGTTTAAGTATA+GGG | 0.378634 | 1.1:-53144578 | None:intergenic |
| CGGCGTGGTGGTGGTGGTTG+TGG | 0.382786 | 1.1:-53141279 | None:intergenic |
| TCTCCATAGATTCCAGATTA+GGG | 0.385939 | 1.1:-53142185 | None:intergenic |
| AGGTCAAGCAACTCTAGATT+TGG | 0.388297 | 1.1:-53143846 | None:intergenic |
| TGTTCATGCAACAGGTTGTC+AGG | 0.400235 | 1.1:+53144788 | MS.gene49349:CDS |
| CGACGGAGGAGTTGAAGCTT+AGG | 0.401872 | 1.1:+53141654 | MS.gene49349:CDS |
| CTGATGGCTCCAAAAGGGTT+CGG | 0.402880 | 1.1:+53145121 | MS.gene49349:CDS |
| CTCTTAGTGCTGCTCAATTG+AGG | 0.407117 | 1.1:+53143197 | MS.gene49349:CDS |
| GCGGTTTGCCGGGGAATTTA+CGG | 0.407564 | 1.1:+53141537 | MS.gene49349:CDS |
| AGATTCAGATCATTCAGCTC+TGG | 0.409333 | 1.1:-53144595 | None:intergenic |
| GCGGTTGGATCTGGGAAATT+AGG | 0.409772 | 1.1:-53144339 | None:intergenic |
| CTCAGTTTGTGGGGTTGCAC+CGG | 0.411998 | 1.1:+53144456 | MS.gene49349:CDS |
| GCTCTGGGCAGTTTAAGTAT+AGG | 0.415214 | 1.1:-53144579 | None:intergenic |
| AGATGGAGATTTGTTGGATC+TGG | 0.419722 | 1.1:+53141472 | MS.gene49349:CDS |
| GATTACTTGAGGTCACATTA+GGG | 0.425752 | 1.1:-53144160 | None:intergenic |
| AAAGCCGCATTGAAGCTATA+TGG | 0.425901 | 1.1:-53143156 | None:intergenic |
| TGATGGCTCCAAAAGGGTTC+GGG | 0.430597 | 1.1:+53145122 | MS.gene49349:CDS |
| TTTGAGGCTTTCGCTTAGAA+TGG | 0.430849 | 1.1:+53141736 | MS.gene49349:CDS |
| AGGCTTGACGATAAAGCGTT+TGG | 0.431841 | 1.1:+53141431 | MS.gene49349:CDS |
| ATCTCCATAGATTCCAGATT+AGG | 0.431846 | 1.1:-53142186 | None:intergenic |
| ACCGCAACCAATCGGATCAA+TGG | 0.439840 | 1.1:+53142222 | MS.gene49349:CDS |
| CCATCAGGTAGACGTTTAGA+AGG | 0.443237 | 1.1:-53145105 | None:intergenic |
| ATCGGCGGCGAAGGTGTGTA+AGG | 0.445828 | 1.1:+53141598 | MS.gene49349:CDS |
| GGCATAAGTGACAGTGGCAT+TGG | 0.453603 | 1.1:+53144083 | MS.gene49349:CDS |
| ATTGATTCGAGCGGTTTGCC+GGG | 0.457271 | 1.1:+53141527 | MS.gene49349:CDS |
| CCCATTGATCCGATTGGTTG+CGG | 0.458118 | 1.1:-53142223 | None:intergenic |
| CATCTAGTTTGTCTACACTT+TGG | 0.463348 | 1.1:+53142868 | MS.gene49349:CDS |
| GTCAACCACCGTCGAATCTC+CGG | 0.463535 | 1.1:+53141354 | MS.gene49349:CDS |
| TGATGGAGATGGAGATTTGT+TGG | 0.464365 | 1.1:+53141466 | MS.gene49349:CDS |
| GTTGCTTCAGTGCCCCACTT+TGG | 0.468923 | 1.1:+53144761 | MS.gene49349:CDS |
| TGGAAGGTTGTTCTAATCTA+GGG | 0.472778 | 1.1:+53142829 | MS.gene49349:CDS |
| GACCTCATAACTATGATTGA+AGG | 0.473186 | 1.1:+53143100 | MS.gene49349:CDS |
| ATAACTATGATTGAAGGATT+GGG | 0.473642 | 1.1:+53143106 | MS.gene49349:CDS |
| GTCTACCTGATGGCTCCAAA+AGG | 0.478330 | 1.1:+53145115 | MS.gene49349:CDS |
| CCGCAACCAATCGGATCAAT+GGG | 0.483382 | 1.1:+53142223 | MS.gene49349:CDS |
| GATTCAGATCATTCAGCTCT+GGG | 0.484073 | 1.1:-53144594 | None:intergenic |
| TCAATCTCCACATCTAGATC+TGG | 0.486325 | 1.1:-53141509 | None:intergenic |
| TCTAAAGAAACTCAGTTTGT+GGG | 0.488471 | 1.1:+53144446 | MS.gene49349:CDS |
| GAAGCTTAGGGTTCCGGTGA+AGG | 0.494599 | 1.1:+53141667 | MS.gene49349:CDS |
| TTTCGTCAGCGGTTGGATCT+GGG | 0.495746 | 1.1:-53144347 | None:intergenic |
| TTTGTGGGGTTGCACCGGCT+TGG | 0.495778 | 1.1:+53144461 | MS.gene49349:CDS |
| CGTGGTGGTGGTGGTTGTGG+TGG | 0.497371 | 1.1:-53141276 | None:intergenic |
| CGAAGGTGTGTAAGGGATGG+AGG | 0.497940 | 1.1:+53141606 | MS.gene49349:CDS |
| GGCGAATGGTTATCTATAGC+AGG | 0.505677 | 1.1:-53145084 | None:intergenic |
| ATCTACCGGCGTGGTGGTGG+TGG | 0.506650 | 1.1:-53141285 | None:intergenic |
| GGGATTGTTATCGGCGGCGA+AGG | 0.511793 | 1.1:+53141589 | MS.gene49349:CDS |
| GGTCTTGACGATCGAGGCAC+TGG | 0.513418 | 1.1:+53141395 | MS.gene49349:CDS |
| TGAATCTACCGGCGTGGTGG+TGG | 0.515249 | 1.1:-53141288 | None:intergenic |
| CATAGTTATGAGGTCAGTGC+TGG | 0.516035 | 1.1:-53143092 | None:intergenic |
| TCGATGCTGCAGAAATGTCC+TGG | 0.517320 | 1.1:+53141710 | MS.gene49349:CDS |
| GACGGAGGAGTTGAAGCTTA+GGG | 0.522111 | 1.1:+53141655 | MS.gene49349:CDS |
| TATATGCTGTAGATTTGCAC+TGG | 0.525532 | 1.1:-53144394 | None:intergenic |
| GATGGTGATGGTGATGGAGA+TGG | 0.527577 | 1.1:+53141455 | MS.gene49349:CDS |
| AGTCGAGGCTATCCAAAGTC+AGG | 0.528185 | 1.1:+53144818 | MS.gene49349:CDS |
| TTGAGGAGGTTACCGCCGGC+GGG | 0.528416 | 1.1:+53141569 | MS.gene49349:CDS |
| ACAAACTGAGTTTCTTTAGA+CGG | 0.530553 | 1.1:-53144443 | None:intergenic |
| GTCTAAAGAAACTCAGTTTG+TGG | 0.530730 | 1.1:+53144445 | MS.gene49349:CDS |
| GCCGGGGAATTTACGGTGGG+AGG | 0.530866 | 1.1:+53141544 | MS.gene49349:CDS |
| TTTGGTGATGGTGATGGTGA+TGG | 0.531955 | 1.1:+53141449 | MS.gene49349:CDS |
| TCTTTGACACCGCAACCAAT+CGG | 0.534722 | 1.1:+53142214 | MS.gene49349:CDS |
| TGGGAAATTAGGATCACATA+TGG | 0.540618 | 1.1:-53144328 | None:intergenic |
| CACAACCACCACCACCACGC+CGG | 0.541400 | 1.1:+53141280 | MS.gene49349:CDS |
| ATCCTTCAATCATAGTTATG+AGG | 0.542576 | 1.1:-53143102 | None:intergenic |
| AAACCTCAAAAGCCTCAAGA+TGG | 0.542982 | 1.1:+53142809 | MS.gene49349:CDS |
| TGATAATGCAGGGATGAACT+AGG | 0.544759 | 1.1:+53142765 | MS.gene49349:intron |
| GGGAGACGGCGAGGAAGCTG+TGG | 0.544858 | 1.1:+53141627 | MS.gene49349:CDS |
| AATCCAACATGAACCTTCAC+CGG | 0.547681 | 1.1:-53141680 | None:intergenic |
| ACCTCCCACCGTAAATTCCC+CGG | 0.549028 | 1.1:-53141545 | None:intergenic |
| GTGTAAGGGATGGAGGGAGA+CGG | 0.554978 | 1.1:+53141613 | MS.gene49349:CDS |
| TTTGAGGAGGTTACCGCCGG+CGG | 0.555516 | 1.1:+53141568 | MS.gene49349:CDS |
| AGCGCTCGCCGGAGATTCGA+CGG | 0.559630 | 1.1:-53141362 | None:intergenic |
| AGCGAAAGCCTCAAAATCCC+AGG | 0.560281 | 1.1:-53141728 | None:intergenic |
| TAGAACAACCTTCCATCTTG+AGG | 0.561903 | 1.1:-53142821 | None:intergenic |
| GGCTTTCGCTTAGAATGGAA+AGG | 0.562043 | 1.1:+53141741 | MS.gene49349:CDS |
| GCACTGGACTTGATCTGTTG+AGG | 0.563835 | 1.1:+53141411 | MS.gene49349:CDS |
| GACGATAAAGCGTTTGGTGA+TGG | 0.566160 | 1.1:+53141437 | MS.gene49349:CDS |
| TCTACCTGATGGCTCCAAAA+GGG | 0.566567 | 1.1:+53145116 | MS.gene49349:CDS |
| CTCTAGATTTGGATAGCTTG+AGG | 0.571915 | 1.1:-53143835 | None:intergenic |
| CGATGCTGCAGAAATGTCCT+GGG | 0.572129 | 1.1:+53141711 | MS.gene49349:CDS |
| CGTCAAACGAAAGCGCTCGC+CGG | 0.573225 | 1.1:-53141373 | None:intergenic |
| TTGTCAGGATTTGTTAGTCG+AGG | 0.573290 | 1.1:+53144803 | MS.gene49349:CDS |
| TAGAGTTGCTTGACCTCAGT+GGG | 0.573574 | 1.1:+53143853 | MS.gene49349:CDS |
| CCTTCTAAACGTCTACCTGA+TGG | 0.573862 | 1.1:+53145105 | MS.gene49349:CDS |
| TCCTTATTTACTTAGTGGCG+AGG | 0.573887 | 1.1:+53145146 | MS.gene49349:CDS |
| TCTGCACTCTCTGTCTAAGA+TGG | 0.574052 | 1.1:+53142899 | MS.gene49349:CDS |
| TCACATTAGGGCAAAGAGCA+AGG | 0.574084 | 1.1:-53144148 | None:intergenic |
| GTAATACCCATTGATCCGAT+TGG | 0.575015 | 1.1:-53142229 | None:intergenic |
| CGGCGAAGGTGTGTAAGGGA+TGG | 0.576084 | 1.1:+53141603 | MS.gene49349:CDS |
| GAAGGTGTGTAAGGGATGGA+GGG | 0.586174 | 1.1:+53141607 | MS.gene49349:CDS |
| CGATGAATCTACCGGCGTGG+TGG | 0.586581 | 1.1:-53141291 | None:intergenic |
| GTTCCGGTGAAGGTTCATGT+TGG | 0.588296 | 1.1:+53141677 | MS.gene49349:CDS |
| CTCAAAAGCCTCAAGATGGA+AGG | 0.589378 | 1.1:+53142813 | MS.gene49349:CDS |
| TATCGTTTCTGTACCGTCTG+CGG | 0.597284 | 1.1:+53141319 | MS.gene49349:CDS |
| CAGTCCATAAGTTCAAGAAG+TGG | 0.599028 | 1.1:-53144297 | None:intergenic |
| ACTTCCGTGTAATGTGCTTG+TGG | 0.602265 | 1.1:+53145526 | MS.gene49349:CDS |
| CCAACCGCTGACGAAAATAA+CGG | 0.604163 | 1.1:+53144354 | MS.gene49349:CDS |
| GTTTGCCGGGGAATTTACGG+TGG | 0.606443 | 1.1:+53141540 | MS.gene49349:CDS |
| AAACGTGGTAGTTACAATTG+TGG | 0.606563 | 1.1:+53141200 | MS.gene49349:CDS |
| TTGATTCGAGCGGTTTGCCG+GGG | 0.608114 | 1.1:+53141528 | MS.gene49349:CDS |
| AGGGATGGAGGGAGACGGCG+AGG | 0.611493 | 1.1:+53141618 | MS.gene49349:CDS |
| GCCGCGTCGCAATCTTCACG+CGG | 0.616141 | 1.1:+53141137 | MS.gene49349:CDS |
| CGAATCACCGAGACCGCAGA+CGG | 0.619376 | 1.1:-53141332 | None:intergenic |
| ATTGAAACTCACATCCAAGC+CGG | 0.620954 | 1.1:-53144475 | None:intergenic |
| CAGTCCACAAGCACATTACA+CGG | 0.620998 | 1.1:-53145530 | None:intergenic |
| GCCGATAACAATCCCGCCGG+CGG | 0.621466 | 1.1:-53141581 | None:intergenic |
| TTTGCCGGGGAATTTACGGT+GGG | 0.626036 | 1.1:+53141541 | MS.gene49349:CDS |
| TCGGCGGCGAAGGTGTGTAA+GGG | 0.627171 | 1.1:+53141599 | MS.gene49349:CDS |
| GAGGAAGCTGTGGAAAGCGA+CGG | 0.628768 | 1.1:+53141637 | MS.gene49349:CDS |
| CTAAAGAAACTCAGTTTGTG+GGG | 0.628993 | 1.1:+53144447 | MS.gene49349:CDS |
| GCCGCCGATAACAATCCCGC+CGG | 0.629360 | 1.1:-53141584 | None:intergenic |
| GCGTGAAGATTGCGACGCGG+CGG | 0.630010 | 1.1:-53141135 | None:intergenic |
| AAAGCGTTTGGTGATGGTGA+TGG | 0.630439 | 1.1:+53141443 | MS.gene49349:CDS |
| GGAAGGTTGTTCTAATCTAG+GGG | 0.635613 | 1.1:+53142830 | MS.gene49349:CDS |
| AGTTACAATTGTGGACGTTG+TGG | 0.636586 | 1.1:+53141209 | MS.gene49349:CDS |
| TAGACAAACTAGATGAAGAG+AGG | 0.636819 | 1.1:-53142860 | None:intergenic |
| GTAGACGTTTAGAAGGCGAA+TGG | 0.637230 | 1.1:-53145098 | None:intergenic |
| TCTAGAACCAGATCTAGATG+TGG | 0.637574 | 1.1:+53141502 | MS.gene49349:CDS |
| CTTCTTGAACTTATGGACTG+TGG | 0.641932 | 1.1:+53144300 | MS.gene49349:CDS |
| ATAGATAACGATGAATCTAC+CGG | 0.642583 | 1.1:-53141299 | None:intergenic |
| AGTGAAATCTCTCTCAGCTG+CGG | 0.645007 | 1.1:-53143046 | None:intergenic |
| CTAGAGTTGCTTGACCTCAG+TGG | 0.647313 | 1.1:+53143852 | MS.gene49349:CDS |
| GAAGCTGTGGAAAGCGACGG+AGG | 0.650091 | 1.1:+53141640 | MS.gene49349:CDS |
| GAAGGTTGTTCTAATCTAGG+GGG | 0.651856 | 1.1:+53142831 | MS.gene49349:CDS |
| TTTGACGGTCTTGACGATCG+AGG | 0.668066 | 1.1:+53141389 | MS.gene49349:CDS |
| GCCGGCGGGATTGTTATCGG+CGG | 0.681604 | 1.1:+53141583 | MS.gene49349:CDS |
| AGATCTGGCATAAGTGACAG+TGG | 0.684251 | 1.1:+53144077 | MS.gene49349:intron |
| GCCGCGTGAAGATTGCGACG+CGG | 0.689777 | 1.1:-53141138 | None:intergenic |
| GCGTCGCAATCTTCACGCGG+CGG | 0.696177 | 1.1:+53141140 | MS.gene49349:CDS |
| TAACGATGAATCTACCGGCG+TGG | 0.708007 | 1.1:-53141294 | None:intergenic |
| GCTCGCCGGAGATTCGACGG+TGG | 0.736622 | 1.1:-53141359 | None:intergenic |
| GATGTGGAGATTGATTCGAG+CGG | 0.746668 | 1.1:+53141518 | MS.gene49349:CDS |
| ACATCCATATAGCTTCAATG+CGG | 0.786151 | 1.1:+53143152 | MS.gene49349:CDS |
| GTACAGATTCATACCCACTG+AGG | 0.831236 | 1.1:-53143866 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTAATTAATTGGTT+TGG | + | chr1.1:53141945-53141964 | MS.gene49349:intron | 10.0% |
| !! | ATCTCAATTTATTAATTAAT+TGG | + | chr1.1:53141940-53141959 | MS.gene49349:intron | 10.0% |
| !! | TAATTTAATCATGAATTAAT+GGG | + | chr1.1:53141825-53141844 | MS.gene49349:intron | 10.0% |
| !!! | GATTATTTTCATTTATTAAT+TGG | + | chr1.1:53144726-53144745 | MS.gene49349:intron | 10.0% |
| !! | AATACACACTAATAAAAATT+AGG | + | chr1.1:53143516-53143535 | MS.gene49349:intron | 15.0% |
| !! | AATCAATCATACAATTTAAA+AGG | - | chr1.1:53144710-53144729 | None:intergenic | 15.0% |
| !! | CTAATTTAATCATGAATTAA+TGG | + | chr1.1:53141824-53141843 | MS.gene49349:intron | 15.0% |
| !! | CTTTGATTATAATTTATCTA+TGG | - | chr1.1:53143965-53143984 | None:intergenic | 15.0% |
| !! | TAAAAAAGAATATGCATTAA+TGG | - | chr1.1:53144517-53144536 | None:intergenic | 15.0% |
| !! | TTTCACATTCAAAATAAAAT+CGG | - | chr1.1:53145429-53145448 | None:intergenic | 15.0% |
| !!! | ATTAATGCATATTCTTTTTT+AGG | + | chr1.1:53144516-53144535 | MS.gene49349:intron | 15.0% |
| !! | AAAACATATTGTGTTTATCT+AGG | + | chr1.1:53145203-53145222 | MS.gene49349:intron | 20.0% |
| !! | AAAAGGATGATGAAAAAAAT+TGG | + | chr1.1:53141972-53141991 | MS.gene49349:intron | 20.0% |
| !! | AATTAATCTTATTCTTAACG+TGG | - | chr1.1:53141784-53141803 | None:intergenic | 20.0% |
| !! | ACAATAAATTGCCAAATAAA+AGG | - | chr1.1:53143227-53143246 | None:intergenic | 20.0% |
| !! | AGCATTGTAGTTAAAATAAT+TGG | - | chr1.1:53143489-53143508 | None:intergenic | 20.0% |
| !! | TCCAAATATACAATTAATCA+GGG | + | chr1.1:53143749-53143768 | MS.gene49349:intron | 20.0% |
| !! | TTTAAGAAATCAAGTTTGAT+GGG | + | chr1.1:53144041-53144060 | MS.gene49349:intron | 20.0% |
| !!! | AAGAAAAATTGGATTTTCTA+GGG | + | chr1.1:53145357-53145376 | MS.gene49349:intron | 20.0% |
| !!! | TTAATTGGTTTGGTTATAAA+AGG | + | chr1.1:53141955-53141974 | MS.gene49349:intron | 20.0% |
| !!! | TTATTTGATAGTTACAAAAC+AGG | - | chr1.1:53144664-53144683 | None:intergenic | 20.0% |
| !!! | TTCTTTTCAAAATTATTTGC+AGG | + | chr1.1:53144555-53144574 | MS.gene49349:intron | 20.0% |
| !!! | TTTCTTTCCTTTTTTTGTAT+CGG | - | chr1.1:53141183-53141202 | None:intergenic | 20.0% |
| !!! | TTTTTAAAATGTATTTGCCT+TGG | + | chr1.1:53143910-53143929 | MS.gene49349:intron | 20.0% |
| ! | AAAGTAAGTTTGTGTATCAA+TGG | + | chr1.1:53145279-53145298 | MS.gene49349:intron | 25.0% |
| ! | ACATTATTAGCATATATGCA+TGG | + | chr1.1:53142690-53142709 | MS.gene49349:intron | 25.0% |
| ! | ATAACTATGATTGAAGGATT+GGG | + | chr1.1:53143106-53143125 | MS.gene49349:CDS | 25.0% |
| ! | ATATATTTATCCGAAACTCA+TGG | + | chr1.1:53143617-53143636 | MS.gene49349:intron | 25.0% |
| ! | ATTAATATCTTCAACTGAGT+GGG | - | chr1.1:53143720-53143739 | None:intergenic | 25.0% |
| ! | CAAAGTTACAATCTATAACA+TGG | - | chr1.1:53142539-53142558 | None:intergenic | 25.0% |
| ! | CAAATATACAATTAATCAGG+GGG | + | chr1.1:53143751-53143770 | MS.gene49349:intron | 25.0% |
| ! | CCAAATATACAATTAATCAG+GGG | + | chr1.1:53143750-53143769 | MS.gene49349:intron | 25.0% |
| ! | GTCCAAATATACAATTAATC+AGG | + | chr1.1:53143748-53143767 | MS.gene49349:intron | 25.0% |
| ! | GTTTAAGAAATCAAGTTTGA+TGG | + | chr1.1:53144040-53144059 | MS.gene49349:intron | 25.0% |
| ! | GTTTGTTTGATATTTATTCC+AGG | + | chr1.1:53145001-53145020 | MS.gene49349:intron | 25.0% |
| ! | TCTAAGTATGCAATTAATGT+TGG | + | chr1.1:53142329-53142348 | MS.gene49349:intron | 25.0% |
| ! | TGATTTCTTAAACAAAGACA+TGG | - | chr1.1:53144033-53144052 | None:intergenic | 25.0% |
| !! | AAAATCCAATTTTTCTTCTG+TGG | - | chr1.1:53145354-53145373 | None:intergenic | 25.0% |
| !! | AACCAATGCTTTTAAATTGT+AGG | + | chr1.1:53143012-53143031 | MS.gene49349:intron | 25.0% |
| !! | ATATTGTGTTTATCTAGGAT+GGG | + | chr1.1:53145208-53145227 | MS.gene49349:intron | 25.0% |
| !! | ATTTATTAATTGGTTCAGAG+AGG | + | chr1.1:53144736-53144755 | MS.gene49349:intron | 25.0% |
| !! | CTACAAACTTTTATAACAGA+TGG | - | chr1.1:53143294-53143313 | None:intergenic | 25.0% |
| !! | GAAGAAAAATTGGATTTTCT+AGG | + | chr1.1:53145356-53145375 | MS.gene49349:intron | 25.0% |
| !! | TACCTACAATTTAAAAGCAT+TGG | - | chr1.1:53143017-53143036 | None:intergenic | 25.0% |
| !! | TTCTATGTGTAATGAGTTTT+CGG | + | chr1.1:53142296-53142315 | MS.gene49349:intron | 25.0% |
| !! | TTTTATACAATGTGAAAGTG+AGG | + | chr1.1:53142363-53142382 | MS.gene49349:intron | 25.0% |
| !!! | ATCCTTTATGATTTGTTTGT+AGG | + | chr1.1:53145047-53145066 | MS.gene49349:intron | 25.0% |
| !!! | ATTACAGTTATGTCCTTTTT+TGG | - | chr1.1:53141240-53141259 | None:intergenic | 25.0% |
| !!! | GGATATTTTAAATTAGAACC+AGG | - | chr1.1:53145031-53145050 | None:intergenic | 25.0% |
| !!! | TGAGTTTTGTGAAATAATTG+AGG | - | chr1.1:53144197-53144216 | None:intergenic | 25.0% |
| !!! | TTACAGTTATGTCCTTTTTT+GGG | - | chr1.1:53141239-53141258 | None:intergenic | 25.0% |
| ACAAAAAAAGGAAAGAAACG+TGG | + | chr1.1:53141185-53141204 | MS.gene49349:CDS | 30.0% | |
| ACAAACTGAGTTTCTTTAGA+CGG | - | chr1.1:53144446-53144465 | None:intergenic | 30.0% | |
| ACATAGAAGCAGCAAAAAAA+AGG | - | chr1.1:53142284-53142303 | None:intergenic | 30.0% | |
| ACTTCAACGTCAATAAGAAT+CGG | - | chr1.1:53143891-53143910 | None:intergenic | 30.0% | |
| AGATCGATGCACAAAAAAAT+AGG | + | chr1.1:53141907-53141926 | MS.gene49349:intron | 30.0% | |
| ATAGATAACGATGAATCTAC+CGG | - | chr1.1:53141302-53141321 | None:intergenic | 30.0% | |
| ATCCTTCAATCATAGTTATG+AGG | - | chr1.1:53143105-53143124 | None:intergenic | 30.0% | |
| ATGCAGAGAAAATTAGTTCA+AGG | - | chr1.1:53144957-53144976 | None:intergenic | 30.0% | |
| ATGTGACAAAAGATTACTTG+AGG | - | chr1.1:53144174-53144193 | None:intergenic | 30.0% | |
| ATTTCGGATACTCATAACTT+TGG | - | chr1.1:53143567-53143586 | None:intergenic | 30.0% | |
| CAGTTAAAAGATCGGAATTT+CGG | - | chr1.1:53143583-53143602 | None:intergenic | 30.0% | |
| CATAACTATGATTGAAGGAT+TGG | + | chr1.1:53143105-53143124 | MS.gene49349:CDS | 30.0% | |
| CATAGAAGCAGCAAAAAAAA+GGG | - | chr1.1:53142283-53142302 | None:intergenic | 30.0% | |
| CATATTGTGTTTATCTAGGA+TGG | + | chr1.1:53145207-53145226 | MS.gene49349:intron | 30.0% | |
| CATTAATATCTTCAACTGAG+TGG | - | chr1.1:53143721-53143740 | None:intergenic | 30.0% | |
| CATTGTAAAAGACCAAACAT+AGG | + | chr1.1:53143407-53143426 | MS.gene49349:intron | 30.0% | |
| CCAATTAATAATGCCAAACA+CGG | - | chr1.1:53142454-53142473 | None:intergenic | 30.0% | |
| CCCCTGATTAATTGTATATT+TGG | - | chr1.1:53143753-53143772 | None:intergenic | 30.0% | |
| CTGAAATTTAAATCTTCCGT+GGG | - | chr1.1:53142595-53142614 | None:intergenic | 30.0% | |
| GACCTACAAACAAATCATAA+AGG | - | chr1.1:53145052-53145071 | None:intergenic | 30.0% | |
| GATTTCATCCATTTACATCA+TGG | - | chr1.1:53142502-53142521 | None:intergenic | 30.0% | |
| TACAATTTAAAAGGAAGTCC+TGG | - | chr1.1:53144701-53144720 | None:intergenic | 30.0% | |
| TAGTCCAACAGTTAAAAGAT+CGG | - | chr1.1:53143591-53143610 | None:intergenic | 30.0% | |
| TCAATATGAATGCAATCTCA+TGG | - | chr1.1:53142980-53142999 | None:intergenic | 30.0% | |
| TCTAAAGAAACTCAGTTTGT+GGG | + | chr1.1:53144446-53144465 | MS.gene49349:CDS | 30.0% | |
| TGCAGAGAAAATTAGTTCAA+GGG | - | chr1.1:53144956-53144975 | None:intergenic | 30.0% | |
| TTACAAAACAGGAACATGAA+GGG | - | chr1.1:53144653-53144672 | None:intergenic | 30.0% | |
| TTCAAATGCCATGATGTAAA+TGG | + | chr1.1:53142491-53142510 | MS.gene49349:intron | 30.0% | |
| TTTCGGATACTCATAACTTT+GGG | - | chr1.1:53143566-53143585 | None:intergenic | 30.0% | |
| ! | ATAGATTTTAGATCCGTGTT+TGG | + | chr1.1:53142438-53142457 | MS.gene49349:intron | 30.0% |
| ! | ATGTTCAACTATGATAATGC+AGG | + | chr1.1:53142754-53142773 | MS.gene49349:intron | 30.0% |
| ! | ATTGAGGTTTGCCTTTTATT+TGG | + | chr1.1:53143213-53143232 | MS.gene49349:intron | 30.0% |
| ! | GTCTGTTTTCATGTTGTTAT+TGG | + | chr1.1:53143245-53143264 | MS.gene49349:intron | 30.0% |
| ! | TCTGAAATTTAAATCTTCCG+TGG | - | chr1.1:53142596-53142615 | None:intergenic | 30.0% |
| ! | TGTTCAACTATGATAATGCA+GGG | + | chr1.1:53142755-53142774 | MS.gene49349:intron | 30.0% |
| ! | TTCTTTTGTCAGCAACAAAT+CGG | - | chr1.1:53142791-53142810 | None:intergenic | 30.0% |
| !! | AATTCCGATCTTTTAACTGT+TGG | + | chr1.1:53143584-53143603 | MS.gene49349:intron | 30.0% |
| !! | AGAAGTCTTTTAAGTGTTTC+AGG | - | chr1.1:53144128-53144147 | None:intergenic | 30.0% |
| !! | ATAATTTGTTGCAACTTACC+AGG | + | chr1.1:53144680-53144699 | MS.gene49349:intron | 30.0% |
| !! | CTATGTTTGGTCTTTTACAA+TGG | - | chr1.1:53143409-53143428 | None:intergenic | 30.0% |
| !! | GAAGTCTTTTAAGTGTTTCA+GGG | - | chr1.1:53144127-53144146 | None:intergenic | 30.0% |
| !! | TCTTTTAACTGTTGGACTAA+AGG | + | chr1.1:53143592-53143611 | MS.gene49349:intron | 30.0% |
| !!! | TATGCTTGATGATTAGCTTT+TGG | - | chr1.1:53144422-53144441 | None:intergenic | 30.0% |
| !!! | TTTTTTTGTATCGGAGCTTT+CGG | - | chr1.1:53141174-53141193 | None:intergenic | 30.0% |
| AAACGTGGTAGTTACAATTG+TGG | + | chr1.1:53141200-53141219 | MS.gene49349:CDS | 35.0% | |
| ACATCCATATAGCTTCAATG+CGG | + | chr1.1:53143152-53143171 | MS.gene49349:CDS | 35.0% | |
| AGATTACTTGAGGTCACATT+AGG | - | chr1.1:53144164-53144183 | None:intergenic | 35.0% | |
| ATATTTATTCCAGGCTTTCC+TGG | + | chr1.1:53145010-53145029 | MS.gene49349:intron | 35.0% | |
| ATCTCCATAGATTCCAGATT+AGG | - | chr1.1:53142189-53142208 | None:intergenic | 35.0% | |
| ATGGAAGGTTGTTCTAATCT+AGG | + | chr1.1:53142828-53142847 | MS.gene49349:CDS | 35.0% | |
| ATTATGCACACCATGAGTTT+CGG | - | chr1.1:53143630-53143649 | None:intergenic | 35.0% | |
| ATTCGACATGATCCTATGTT+TGG | - | chr1.1:53143422-53143441 | None:intergenic | 35.0% | |
| CACTGCAACATGAAACAAAT+CGG | - | chr1.1:53142125-53142144 | None:intergenic | 35.0% | |
| CCGTGTTTGGCATTATTAAT+TGG | + | chr1.1:53142451-53142470 | MS.gene49349:intron | 35.0% | |
| CTAAAGAAACTCAGTTTGTG+GGG | + | chr1.1:53144447-53144466 | MS.gene49349:CDS | 35.0% | |
| CTATAGCAGGAAAAACATTG+CGG | - | chr1.1:53145074-53145093 | None:intergenic | 35.0% | |
| GAAAGCTCCGATACAAAAAA+AGG | + | chr1.1:53141173-53141192 | MS.gene49349:CDS | 35.0% | |
| GAACACTACTGAAACATGAA+AGG | - | chr1.1:53144861-53144880 | None:intergenic | 35.0% | |
| GACCTCATAACTATGATTGA+AGG | + | chr1.1:53143100-53143119 | MS.gene49349:CDS | 35.0% | |
| GATTACTTGAGGTCACATTA+GGG | - | chr1.1:53144163-53144182 | None:intergenic | 35.0% | |
| GTAAATGGATGAAATCCTGA+TGG | + | chr1.1:53142506-53142525 | MS.gene49349:intron | 35.0% | |
| GTCTAAAGAAACTCAGTTTG+TGG | + | chr1.1:53144445-53144464 | MS.gene49349:CDS | 35.0% | |
| GTTACAAAACAGGAACATGA+AGG | - | chr1.1:53144654-53144673 | None:intergenic | 35.0% | |
| TACAAAACAGGAACATGAAG+GGG | - | chr1.1:53144652-53144671 | None:intergenic | 35.0% | |
| TAGACAAACTAGATGAAGAG+AGG | - | chr1.1:53142863-53142882 | None:intergenic | 35.0% | |
| TATATGCTGTAGATTTGCAC+TGG | - | chr1.1:53144397-53144416 | None:intergenic | 35.0% | |
| TCTCCATAGATTCCAGATTA+GGG | - | chr1.1:53142188-53142207 | None:intergenic | 35.0% | |
| TCTTATTCTTAACGTGGATC+TGG | - | chr1.1:53141778-53141797 | None:intergenic | 35.0% | |
| TCTTGTAGAAATCTGCATTC+AGG | + | chr1.1:53144622-53144641 | MS.gene49349:CDS | 35.0% | |
| TGGAAGGTTGTTCTAATCTA+GGG | + | chr1.1:53142829-53142848 | MS.gene49349:CDS | 35.0% | |
| TGGGAAATTAGGATCACATA+TGG | - | chr1.1:53144331-53144350 | None:intergenic | 35.0% | |
| TTGGAAAATGTTCATGCAAC+AGG | + | chr1.1:53144780-53144799 | MS.gene49349:CDS | 35.0% | |
| ! | ATCCAATTTTTCTTCTGTGG+AGG | - | chr1.1:53145351-53145370 | None:intergenic | 35.0% |
| ! | ATTGCCACTTCTTGAACTTA+TGG | + | chr1.1:53144293-53144312 | MS.gene49349:CDS | 35.0% |
| ! | CATCTAGTTTGTCTACACTT+TGG | + | chr1.1:53142868-53142887 | MS.gene49349:CDS | 35.0% |
| ! | CATGAACATTTTCCAAAGTG+GGG | - | chr1.1:53144776-53144795 | None:intergenic | 35.0% |
| ! | GCATGAACATTTTCCAAAGT+GGG | - | chr1.1:53144777-53144796 | None:intergenic | 35.0% |
| ! | TGCATGAACATTTTCCAAAG+TGG | - | chr1.1:53144778-53144797 | None:intergenic | 35.0% |
| !! | AAAAGCATTGGTTAGCAACT+AGG | - | chr1.1:53143005-53143024 | None:intergenic | 35.0% |
| !! | GTTTGGTCTTTTACAATGGT+TGG | - | chr1.1:53143405-53143424 | None:intergenic | 35.0% |
| !! | TTTTCCGTTATTTTCGTCAG+CGG | - | chr1.1:53144361-53144380 | None:intergenic | 35.0% |
| !!! | AGTTATGTCCTTTTTTGGGA+AGG | - | chr1.1:53141235-53141254 | None:intergenic | 35.0% |
| !!! | TGATTTTGATTCAACGATGC+TGG | + | chr1.1:53142143-53142162 | MS.gene49349:CDS | 35.0% |
| !!! | TTCGCTTTTTTTCAGGTTCA+GGG | - | chr1.1:53145493-53145512 | None:intergenic | 35.0% |
| AAACCTCAAAAGCCTCAAGA+TGG | + | chr1.1:53142809-53142828 | MS.gene49349:CDS | 40.0% | |
| AAAGCCGCATTGAAGCTATA+TGG | - | chr1.1:53143159-53143178 | None:intergenic | 40.0% | |
| AAATTAGAACCAGGAAAGCC+TGG | - | chr1.1:53145022-53145041 | None:intergenic | 40.0% | |
| AACCTGAAAAAAAGCGAAGG+AGG | + | chr1.1:53145495-53145514 | MS.gene49349:CDS | 40.0% | |
| AATCCAACATGAACCTTCAC+CGG | - | chr1.1:53141683-53141702 | None:intergenic | 40.0% | |
| AATCTGCTCTCACATGTTTC+AGG | + | chr1.1:53144246-53144265 | MS.gene49349:intron | 40.0% | |
| ACCTCGCCACTAAGTAAATA+AGG | - | chr1.1:53145150-53145169 | None:intergenic | 40.0% | |
| AGATGGAATTGCAACACATG+TGG | - | chr1.1:53143277-53143296 | None:intergenic | 40.0% | |
| AGATTCAGATCATTCAGCTC+TGG | - | chr1.1:53144598-53144617 | None:intergenic | 40.0% | |
| AGCCTCCACAGAAGAAAAAT+TGG | + | chr1.1:53145346-53145365 | MS.gene49349:intron | 40.0% | |
| AGGTCAAGCAACTCTAGATT+TGG | - | chr1.1:53143849-53143868 | None:intergenic | 40.0% | |
| AGTTACAATTGTGGACGTTG+TGG | + | chr1.1:53141209-53141228 | MS.gene49349:CDS | 40.0% | |
| ATTGAAACTCACATCCAAGC+CGG | - | chr1.1:53144478-53144497 | None:intergenic | 40.0% | |
| CAAAGTCAGGTAACAAAGTC+AGG | + | chr1.1:53144831-53144850 | MS.gene49349:intron | 40.0% | |
| CAGTCCATAAGTTCAAGAAG+TGG | - | chr1.1:53144300-53144319 | None:intergenic | 40.0% | |
| CGAATGCTTTCTCTTGTTCT+TGG | + | chr1.1:53143777-53143796 | MS.gene49349:CDS | 40.0% | |
| CTCTAGATTTGGATAGCTTG+AGG | - | chr1.1:53143838-53143857 | None:intergenic | 40.0% | |
| CTCTGGGCAGTTTAAGTATA+GGG | - | chr1.1:53144581-53144600 | None:intergenic | 40.0% | |
| CTGAACCTGAAAAAAAGCGA+AGG | + | chr1.1:53145492-53145511 | MS.gene49349:CDS | 40.0% | |
| CTGACTTTGTTACCTGACTT+TGG | - | chr1.1:53144833-53144852 | None:intergenic | 40.0% | |
| GAAGGTTGTTCTAATCTAGG+GGG | + | chr1.1:53142831-53142850 | MS.gene49349:CDS | 40.0% | |
| GATTCAGATCATTCAGCTCT+GGG | - | chr1.1:53144597-53144616 | None:intergenic | 40.0% | |
| GGAAGGTTGTTCTAATCTAG+GGG | + | chr1.1:53142830-53142849 | MS.gene49349:CDS | 40.0% | |
| GTAATACCCATTGATCCGAT+TGG | - | chr1.1:53142232-53142251 | None:intergenic | 40.0% | |
| TAACATGGCAATACACCATC+AGG | - | chr1.1:53142524-53142543 | None:intergenic | 40.0% | |
| TAGAACAACCTTCCATCTTG+AGG | - | chr1.1:53142824-53142843 | None:intergenic | 40.0% | |
| TATTTCACAGACACCGCATT+TGG | - | chr1.1:53143458-53143477 | None:intergenic | 40.0% | |
| TCAATCTCCACATCTAGATC+TGG | - | chr1.1:53141512-53141531 | None:intergenic | 40.0% | |
| TGATGGAGATGGAGATTTGT+TGG | + | chr1.1:53141466-53141485 | MS.gene49349:CDS | 40.0% | |
| TGTGTCTTTACTGTGTGAAC+TGG | + | chr1.1:53145313-53145332 | MS.gene49349:intron | 40.0% | |
| TTTATACTGCCTGCCAAATG+CGG | + | chr1.1:53143442-53143461 | MS.gene49349:intron | 40.0% | |
| ! | AGAAATGTCCTGGGATTTTG+AGG | + | chr1.1:53141720-53141739 | MS.gene49349:CDS | 40.0% |
| ! | ATGCCCTAATCTGGAATCTA+TGG | + | chr1.1:53142182-53142201 | MS.gene49349:CDS | 40.0% |
| ! | CGGGTTCCTTATTTACTTAG+TGG | + | chr1.1:53145141-53145160 | MS.gene49349:CDS | 40.0% |
| ! | CTTCTTGAACTTATGGACTG+TGG | + | chr1.1:53144300-53144319 | MS.gene49349:CDS | 40.0% |
| ! | TCCTTATTTACTTAGTGGCG+AGG | + | chr1.1:53145146-53145165 | MS.gene49349:CDS | 40.0% |
| ! | TCTAGAACCAGATCTAGATG+TGG | + | chr1.1:53141502-53141521 | MS.gene49349:CDS | 40.0% |
| ! | TGATAATGCAGGGATGAACT+AGG | + | chr1.1:53142765-53142784 | MS.gene49349:intron | 40.0% |
| ! | TTTGAGGCTTTCGCTTAGAA+TGG | + | chr1.1:53141736-53141755 | MS.gene49349:CDS | 40.0% |
| !! | AGATGGAGATTTGTTGGATC+TGG | + | chr1.1:53141472-53141491 | MS.gene49349:CDS | 40.0% |
| !! | TTGTCAGGATTTGTTAGTCG+AGG | + | chr1.1:53144803-53144822 | MS.gene49349:CDS | 40.0% |
| !!! | ATCCTCCTTCGCTTTTTTTC+AGG | - | chr1.1:53145500-53145519 | None:intergenic | 40.0% |
| !!! | CTTCGCTTTTTTTCAGGTTC+AGG | - | chr1.1:53145494-53145513 | None:intergenic | 40.0% |
| !!! | GCAACTTTTGTTTTGTCCCA+CGG | + | chr1.1:53142576-53142595 | MS.gene49349:intron | 40.0% |
| !!! | TCGCTTTTTTTCAGGTTCAG+GGG | - | chr1.1:53145492-53145511 | None:intergenic | 40.0% |
| !!! | TGCTTTTTCATGCCCTAATC+TGG | + | chr1.1:53142173-53142192 | MS.gene49349:CDS | 40.0% |
| AACTTTGCCTTCATCAGCAG+AGG | + | chr1.1:53142552-53142571 | MS.gene49349:intron | 45.0% | |
| ACTTCCGTGTAATGTGCTTG+TGG | + | chr1.1:53145526-53145545 | MS.gene49349:CDS | 45.0% | |
| AGATCTGGCATAAGTGACAG+TGG | + | chr1.1:53144077-53144096 | MS.gene49349:intron | 45.0% | |
| AGTGAAATCTCTCTCAGCTG+CGG | - | chr1.1:53143049-53143068 | None:intergenic | 45.0% | |
| CAGTCCACAAGCACATTACA+CGG | - | chr1.1:53145533-53145552 | None:intergenic | 45.0% | |
| CATAGTTATGAGGTCAGTGC+TGG | - | chr1.1:53143095-53143114 | None:intergenic | 45.0% | |
| CCAACCGCTGACGAAAATAA+CGG | + | chr1.1:53144354-53144373 | MS.gene49349:CDS | 45.0% | |
| CTCAAAAGCCTCAAGATGGA+AGG | + | chr1.1:53142813-53142832 | MS.gene49349:CDS | 45.0% | |
| GGCGAATGGTTATCTATAGC+AGG | - | chr1.1:53145087-53145106 | None:intergenic | 45.0% | |
| GGCTTTCGCTTAGAATGGAA+AGG | + | chr1.1:53141741-53141760 | MS.gene49349:CDS | 45.0% | |
| GGTTGCTGTCATAACAGATC+TGG | + | chr1.1:53144062-53144081 | MS.gene49349:intron | 45.0% | |
| GTACAGATTCATACCCACTG+AGG | - | chr1.1:53143869-53143888 | None:intergenic | 45.0% | |
| TAGAGTTGCTTGACCTCAGT+GGG | + | chr1.1:53143853-53143872 | MS.gene49349:CDS | 45.0% | |
| TATCGTTTCTGTACCGTCTG+CGG | + | chr1.1:53141319-53141338 | MS.gene49349:CDS | 45.0% | |
| TCACATTAGGGCAAAGAGCA+AGG | - | chr1.1:53144151-53144170 | None:intergenic | 45.0% | |
| TCTACCTGATGGCTCCAAAA+GGG | + | chr1.1:53145116-53145135 | MS.gene49349:CDS | 45.0% | |
| TCTGCACTCTCTGTCTAAGA+TGG | + | chr1.1:53142899-53142918 | MS.gene49349:CDS | 45.0% | |
| TCTTTGACACCGCAACCAAT+CGG | + | chr1.1:53142214-53142233 | MS.gene49349:CDS | 45.0% | |
| TGTTCATGCAACAGGTTGTC+AGG | + | chr1.1:53144788-53144807 | MS.gene49349:CDS | 45.0% | |
| ! | AGGCTTGACGATAAAGCGTT+TGG | + | chr1.1:53141431-53141450 | MS.gene49349:CDS | 45.0% |
| ! | ATAAGGAACCCGAACCCTTT+TGG | - | chr1.1:53145133-53145152 | None:intergenic | 45.0% |
| ! | ATTTACGGTGGGAGGTTTTG+AGG | + | chr1.1:53141552-53141571 | MS.gene49349:CDS | 45.0% |
| ! | CTCTTAGTGCTGCTCAATTG+AGG | + | chr1.1:53143197-53143216 | MS.gene49349:CDS | 45.0% |
| ! | CTTCCATCTTGAGGCTTTTG+AGG | - | chr1.1:53142815-53142834 | None:intergenic | 45.0% |
| ! | GACGATAAAGCGTTTGGTGA+TGG | + | chr1.1:53141437-53141456 | MS.gene49349:CDS | 45.0% |
| ! | GCTCTGGGCAGTTTAAGTAT+AGG | - | chr1.1:53144582-53144601 | None:intergenic | 45.0% |
| ! | TCACGCTTCTTTTGTCTCCA+AGG | - | chr1.1:53143930-53143949 | None:intergenic | 45.0% |
| ! | TGGAGACAAAAGAAGCGTGA+TGG | + | chr1.1:53143930-53143949 | MS.gene49349:intron | 45.0% |
| ! | TTTTGTATCGGAGCTTTCGG+CGG | - | chr1.1:53141171-53141190 | None:intergenic | 45.0% |
| !! | AAAGCGTTTGGTGATGGTGA+TGG | + | chr1.1:53141443-53141462 | MS.gene49349:CDS | 45.0% |
| !! | GATGTGGAGATTGATTCGAG+CGG | + | chr1.1:53141518-53141537 | MS.gene49349:CDS | 45.0% |
| !! | TTTGGTGATGGTGATGGTGA+TGG | + | chr1.1:53141449-53141468 | MS.gene49349:CDS | 45.0% |
| ACCGCAACCAATCGGATCAA+TGG | + | chr1.1:53142222-53142241 | MS.gene49349:CDS | 50.0% | |
| AGCGAAAGCCTCAAAATCCC+AGG | - | chr1.1:53141731-53141750 | None:intergenic | 50.0% | |
| AGTCGAGGCTATCCAAAGTC+AGG | + | chr1.1:53144818-53144837 | MS.gene49349:CDS | 50.0% | |
| AGTTGCACCTCTGCTGATGA+AGG | - | chr1.1:53142562-53142581 | None:intergenic | 50.0% | |
| CCGCAACCAATCGGATCAAT+GGG | + | chr1.1:53142223-53142242 | MS.gene49349:CDS | 50.0% | |
| CGATGCTGCAGAAATGTCCT+GGG | + | chr1.1:53141711-53141730 | MS.gene49349:CDS | 50.0% | |
| CGTTGTGGCCTTCCCAAAAA+AGG | + | chr1.1:53141224-53141243 | MS.gene49349:CDS | 50.0% | |
| CTAGAGTTGCTTGACCTCAG+TGG | + | chr1.1:53143852-53143871 | MS.gene49349:CDS | 50.0% | |
| CTGATGGCTCCAAAAGGGTT+CGG | + | chr1.1:53145121-53145140 | MS.gene49349:CDS | 50.0% | |
| CTGCTCTCACATGTTTCAGG+TGG | + | chr1.1:53144249-53144268 | MS.gene49349:intron | 50.0% | |
| GACGGAGGAGTTGAAGCTTA+GGG | + | chr1.1:53141655-53141674 | MS.gene49349:CDS | 50.0% | |
| GCACTGGACTTGATCTGTTG+AGG | + | chr1.1:53141411-53141430 | MS.gene49349:CDS | 50.0% | |
| GCGGTTGGATCTGGGAAATT+AGG | - | chr1.1:53144342-53144361 | None:intergenic | 50.0% | |
| GGAGTTGAAGCTTAGGGTTC+CGG | + | chr1.1:53141661-53141680 | MS.gene49349:CDS | 50.0% | |
| GGCATAAGTGACAGTGGCAT+TGG | + | chr1.1:53144083-53144102 | MS.gene49349:CDS | 50.0% | |
| GTTCCGGTGAAGGTTCATGT+TGG | + | chr1.1:53141677-53141696 | MS.gene49349:CDS | 50.0% | |
| TAACGATGAATCTACCGGCG+TGG | - | chr1.1:53141297-53141316 | None:intergenic | 50.0% | |
| TCGATGCTGCAGAAATGTCC+TGG | + | chr1.1:53141710-53141729 | MS.gene49349:CDS | 50.0% | |
| TGATGGCTCCAAAAGGGTTC+GGG | + | chr1.1:53145122-53145141 | MS.gene49349:CDS | 50.0% | |
| TTTCGTCAGCGGTTGGATCT+GGG | - | chr1.1:53144350-53144369 | None:intergenic | 50.0% | |
| TTTGACGGTCTTGACGATCG+AGG | + | chr1.1:53141389-53141408 | MS.gene49349:CDS | 50.0% | |
| TTTGCCGGGGAATTTACGGT+GGG | + | chr1.1:53141541-53141560 | MS.gene49349:CDS | 50.0% | |
| ! | ACACGAAGGCTTTAGCAGCT+AGG | - | chr1.1:53142657-53142676 | None:intergenic | 50.0% |
| ! | CCCATTGATCCGATTGGTTG+CGG | - | chr1.1:53142226-53142245 | None:intergenic | 50.0% |
| ! | GAAGGTGTGTAAGGGATGGA+GGG | + | chr1.1:53141607-53141626 | MS.gene49349:CDS | 50.0% |
| ! | TAAGCTCTAGCTGCACACGA+AGG | - | chr1.1:53142671-53142690 | None:intergenic | 50.0% |
| ! | TTTTCGTCAGCGGTTGGATC+TGG | - | chr1.1:53144351-53144370 | None:intergenic | 50.0% |
| !! | ATTGATTCGAGCGGTTTGCC+GGG | + | chr1.1:53141527-53141546 | MS.gene49349:CDS | 50.0% |
| !! | CCGTTATTTTCGTCAGCGGT+TGG | - | chr1.1:53144357-53144376 | None:intergenic | 50.0% |
| !! | GATGGTGATGGTGATGGAGA+TGG | + | chr1.1:53141455-53141474 | MS.gene49349:CDS | 50.0% |
| !! | GATTGATTCGAGCGGTTTGC+CGG | + | chr1.1:53141526-53141545 | MS.gene49349:CDS | 50.0% |
| !!! | GGTCAGTGCTGGCATTTTCT+TGG | - | chr1.1:53143084-53143103 | None:intergenic | 50.0% |
| ACCTCCCACCGTAAATTCCC+CGG | - | chr1.1:53141548-53141567 | None:intergenic | 55.0% | |
| CGACGGAGGAGTTGAAGCTT+AGG | + | chr1.1:53141654-53141673 | MS.gene49349:CDS | 55.0% | |
| CTCAGTTTGTGGGGTTGCAC+CGG | + | chr1.1:53144456-53144475 | MS.gene49349:CDS | 55.0% | |
| GAAGCTTAGGGTTCCGGTGA+AGG | + | chr1.1:53141667-53141686 | MS.gene49349:CDS | 55.0% | |
| GAGGAAGCTGTGGAAAGCGA+CGG | + | chr1.1:53141637-53141656 | MS.gene49349:CDS | 55.0% | |
| GCGGTTTGCCGGGGAATTTA+CGG | + | chr1.1:53141537-53141556 | MS.gene49349:CDS | 55.0% | |
| GTCAACCACCGTCGAATCTC+CGG | + | chr1.1:53141354-53141373 | MS.gene49349:CDS | 55.0% | |
| GTGTAAGGGATGGAGGGAGA+CGG | + | chr1.1:53141613-53141632 | MS.gene49349:CDS | 55.0% | |
| GTTGCTTCAGTGCCCCACTT+TGG | + | chr1.1:53144761-53144780 | MS.gene49349:CDS | 55.0% | |
| GTTTGCCGGGGAATTTACGG+TGG | + | chr1.1:53141540-53141559 | MS.gene49349:CDS | 55.0% | |
| TCACAGACACCGCATTTGGC+AGG | - | chr1.1:53143454-53143473 | None:intergenic | 55.0% | |
| TTCTGTACCGTCTGCGGTCT+CGG | + | chr1.1:53141325-53141344 | MS.gene49349:CDS | 55.0% | |
| ! | CGAAGGTGTGTAAGGGATGG+AGG | + | chr1.1:53141606-53141625 | MS.gene49349:CDS | 55.0% |
| ! | GTGGTGGTTGTGGTGGAAAC+TGG | - | chr1.1:53141272-53141291 | None:intergenic | 55.0% |
| ! | TTGATTCGAGCGGTTTGCCG+GGG | + | chr1.1:53141528-53141547 | MS.gene49349:CDS | 55.0% |
| !!! | CGAACCCTTTTGGAGCCATC+AGG | - | chr1.1:53145123-53145142 | None:intergenic | 55.0% |
| !!! | GGTTTTGAGGAGGTTACCGC+CGG | + | chr1.1:53141565-53141584 | MS.gene49349:CDS | 55.0% |
| !!! | TACGGTGGGAGGTTTTGAGG+AGG | + | chr1.1:53141555-53141574 | MS.gene49349:CDS | 55.0% |
| ACCGCCGGCGGGATTGTTAT+CGG | + | chr1.1:53141580-53141599 | MS.gene49349:CDS | 60.0% | |
| CGAATCACCGAGACCGCAGA+CGG | - | chr1.1:53141335-53141354 | None:intergenic | 60.0% | |
| CGATGAATCTACCGGCGTGG+TGG | - | chr1.1:53141294-53141313 | None:intergenic | 60.0% | |
| CGGCGAGCGCTTTCGTTTGA+CGG | + | chr1.1:53141374-53141393 | MS.gene49349:CDS | 60.0% | |
| GAAGCTGTGGAAAGCGACGG+AGG | + | chr1.1:53141640-53141659 | MS.gene49349:CDS | 60.0% | |
| GGGATTGTTATCGGCGGCGA+AGG | + | chr1.1:53141589-53141608 | MS.gene49349:CDS | 60.0% | |
| GGTCTTGACGATCGAGGCAC+TGG | + | chr1.1:53141395-53141414 | MS.gene49349:CDS | 60.0% | |
| TGAATCTACCGGCGTGGTGG+TGG | - | chr1.1:53141291-53141310 | None:intergenic | 60.0% | |
| TTTGAGGAGGTTACCGCCGG+CGG | + | chr1.1:53141568-53141587 | MS.gene49349:CDS | 60.0% | |
| ! | ATCGGCGGCGAAGGTGTGTA+AGG | + | chr1.1:53141598-53141617 | MS.gene49349:CDS | 60.0% |
| ! | CGGCGAAGGTGTGTAAGGGA+TGG | + | chr1.1:53141603-53141622 | MS.gene49349:CDS | 60.0% |
| ! | TCGGCGGCGAAGGTGTGTAA+GGG | + | chr1.1:53141599-53141618 | MS.gene49349:CDS | 60.0% |
| !! | CGTCAAACGAAAGCGCTCGC+CGG | - | chr1.1:53141376-53141395 | None:intergenic | 60.0% |
| !! | TTTGTGGGGTTGCACCGGCT+TGG | + | chr1.1:53144461-53144480 | MS.gene49349:CDS | 60.0% |
| AGCGCTCGCCGGAGATTCGA+CGG | - | chr1.1:53141365-53141384 | None:intergenic | 65.0% | |
| CACAACCACCACCACCACGC+CGG | + | chr1.1:53141280-53141299 | MS.gene49349:CDS | 65.0% | |
| GCCGATAACAATCCCGCCGG+CGG | - | chr1.1:53141584-53141603 | None:intergenic | 65.0% | |
| GCCGCCGATAACAATCCCGC+CGG | - | chr1.1:53141587-53141606 | None:intergenic | 65.0% | |
| GCCGCGTCGCAATCTTCACG+CGG | + | chr1.1:53141137-53141156 | MS.gene49349:CDS | 65.0% | |
| GCCGCGTGAAGATTGCGACG+CGG | - | chr1.1:53141141-53141160 | None:intergenic | 65.0% | |
| GCCGGCGGGATTGTTATCGG+CGG | + | chr1.1:53141583-53141602 | MS.gene49349:CDS | 65.0% | |
| GCCGGGGAATTTACGGTGGG+AGG | + | chr1.1:53141544-53141563 | MS.gene49349:CDS | 65.0% | |
| GCGTCGCAATCTTCACGCGG+CGG | + | chr1.1:53141140-53141159 | MS.gene49349:CDS | 65.0% | |
| GCGTGAAGATTGCGACGCGG+CGG | - | chr1.1:53141138-53141157 | None:intergenic | 65.0% | |
| TTGAGGAGGTTACCGCCGGC+GGG | + | chr1.1:53141569-53141588 | MS.gene49349:CDS | 65.0% | |
| !! | ATCTACCGGCGTGGTGGTGG+TGG | - | chr1.1:53141288-53141307 | None:intergenic | 65.0% |
| !! | CGTGGTGGTGGTGGTTGTGG+TGG | - | chr1.1:53141279-53141298 | None:intergenic | 65.0% |
| AGGGATGGAGGGAGACGGCG+AGG | + | chr1.1:53141618-53141637 | MS.gene49349:CDS | 70.0% | |
| GCTCGCCGGAGATTCGACGG+TGG | - | chr1.1:53141362-53141381 | None:intergenic | 70.0% | |
| GGGAGACGGCGAGGAAGCTG+TGG | + | chr1.1:53141627-53141646 | MS.gene49349:CDS | 70.0% | |
| !! | CGGCGTGGTGGTGGTGGTTG+TGG | - | chr1.1:53141282-53141301 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 53141116 | 53145553 | 53141116 | ID=MS.gene49349 |
| chr1.1 | mRNA | 53141116 | 53145553 | 53141116 | ID=MS.gene49349.t1;Parent=MS.gene49349 |
| chr1.1 | exon | 53141116 | 53141762 | 53141116 | ID=MS.gene49349.t1.exon1;Parent=MS.gene49349.t1 |
| chr1.1 | CDS | 53141116 | 53141762 | 53141116 | ID=cds.MS.gene49349.t1;Parent=MS.gene49349.t1 |
| chr1.1 | exon | 53142143 | 53142244 | 53142143 | ID=MS.gene49349.t1.exon2;Parent=MS.gene49349.t1 |
| chr1.1 | CDS | 53142143 | 53142244 | 53142143 | ID=cds.MS.gene49349.t1;Parent=MS.gene49349.t1 |
| chr1.1 | exon | 53142776 | 53142920 | 53142776 | ID=MS.gene49349.t1.exon3;Parent=MS.gene49349.t1 |
| chr1.1 | CDS | 53142776 | 53142920 | 53142776 | ID=cds.MS.gene49349.t1;Parent=MS.gene49349.t1 |
| chr1.1 | exon | 53143034 | 53143218 | 53143034 | ID=MS.gene49349.t1.exon4;Parent=MS.gene49349.t1 |
| chr1.1 | CDS | 53143034 | 53143218 | 53143034 | ID=cds.MS.gene49349.t1;Parent=MS.gene49349.t1 |
| chr1.1 | exon | 53143770 | 53143874 | 53143770 | ID=MS.gene49349.t1.exon5;Parent=MS.gene49349.t1 |
| chr1.1 | CDS | 53143770 | 53143874 | 53143770 | ID=cds.MS.gene49349.t1;Parent=MS.gene49349.t1 |
| chr1.1 | exon | 53144079 | 53144176 | 53144079 | ID=MS.gene49349.t1.exon6;Parent=MS.gene49349.t1 |
| chr1.1 | CDS | 53144079 | 53144176 | 53144079 | ID=cds.MS.gene49349.t1;Parent=MS.gene49349.t1 |
| chr1.1 | exon | 53144268 | 53144485 | 53144268 | ID=MS.gene49349.t1.exon7;Parent=MS.gene49349.t1 |
| chr1.1 | CDS | 53144268 | 53144485 | 53144268 | ID=cds.MS.gene49349.t1;Parent=MS.gene49349.t1 |
| chr1.1 | exon | 53144577 | 53144643 | 53144577 | ID=MS.gene49349.t1.exon8;Parent=MS.gene49349.t1 |
| chr1.1 | CDS | 53144577 | 53144643 | 53144577 | ID=cds.MS.gene49349.t1;Parent=MS.gene49349.t1 |
| chr1.1 | exon | 53144754 | 53144839 | 53144754 | ID=MS.gene49349.t1.exon9;Parent=MS.gene49349.t1 |
| chr1.1 | CDS | 53144754 | 53144839 | 53144754 | ID=cds.MS.gene49349.t1;Parent=MS.gene49349.t1 |
| chr1.1 | exon | 53145069 | 53145167 | 53145069 | ID=MS.gene49349.t1.exon10;Parent=MS.gene49349.t1 |
| chr1.1 | CDS | 53145069 | 53145167 | 53145069 | ID=cds.MS.gene49349.t1;Parent=MS.gene49349.t1 |
| chr1.1 | exon | 53145488 | 53145553 | 53145488 | ID=MS.gene49349.t1.exon11;Parent=MS.gene49349.t1 |
| chr1.1 | CDS | 53145488 | 53145553 | 53145488 | ID=cds.MS.gene49349.t1;Parent=MS.gene49349.t1 |
| Gene Sequence |
| Protein sequence |
