Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055980.t1 | XP_003625285.1 | 97.9 | 187 | 4 | 0 | 1 | 187 | 1 | 187 | 8.70E-103 | 382.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055980.t1 | Q9FG36 | 62.7 | 161 | 55 | 2 | 31 | 187 | 51 | 210 | 9.8e-55 | 214.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055980.t1 | G7KVF9 | 97.9 | 187 | 4 | 0 | 1 | 187 | 1 | 187 | 6.2e-103 | 382.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050404 | MS.gene055980 | 0.806068 | 9.84E-50 | -1.69E-46 |
| MS.gene055980 | MS.gene064919 | 0.834574 | 2.77E-56 | -1.69E-46 |
| MS.gene055980 | MS.gene065133 | 0.815092 | 1.10E-51 | -1.69E-46 |
| MS.gene055980 | MS.gene065389 | 0.812473 | 4.17E-51 | -1.69E-46 |
| MS.gene055980 | MS.gene07055 | 0.812318 | 4.50E-51 | -1.69E-46 |
| MS.gene055980 | MS.gene072900 | 0.811804 | 5.83E-51 | -1.69E-46 |
| MS.gene055980 | MS.gene59648 | 0.80429 | 2.32E-49 | -1.69E-46 |
| MS.gene055980 | MS.gene59649 | 0.80017 | 1.63E-48 | -1.69E-46 |
| MS.gene055980 | MS.gene59906 | 0.812213 | 4.75E-51 | -1.69E-46 |
| MS.gene055980 | MS.gene67054 | 0.817016 | 4.10E-52 | -1.69E-46 |
| MS.gene055980 | MS.gene71833 | 0.821044 | 4.98E-53 | -1.69E-46 |
| MS.gene055980 | MS.gene94277 | 0.827433 | 1.57E-54 | -1.69E-46 |
| MS.gene055980 | MS.gene96680 | 0.801689 | 8.00E-49 | -1.69E-46 |
| MS.gene055980 | MS.gene96681 | 0.83721 | 5.95E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055980.t1 | MTR_7g093490 | 97.861 | 187 | 4 | 0 | 1 | 187 | 1 | 187 | 3.06e-138 | 383 |
| MS.gene055980.t1 | MTR_7g093490 | 94.652 | 187 | 4 | 1 | 1 | 187 | 1 | 181 | 7.43e-131 | 364 |
| MS.gene055980.t1 | MTR_7g093490 | 90.116 | 172 | 15 | 1 | 1 | 172 | 1 | 170 | 3.30e-114 | 322 |
| MS.gene055980.t1 | MTR_1g050322 | 50.450 | 111 | 52 | 1 | 75 | 185 | 79 | 186 | 2.75e-34 | 120 |
| MS.gene055980.t1 | MTR_1g050322 | 42.105 | 76 | 41 | 1 | 74 | 149 | 78 | 150 | 8.81e-16 | 71.2 |
| MS.gene055980.t1 | MTR_3g089065 | 25.287 | 174 | 108 | 5 | 21 | 187 | 15 | 173 | 4.38e-13 | 64.7 |
| MS.gene055980.t1 | MTR_8g059015 | 29.412 | 119 | 75 | 3 | 51 | 169 | 53 | 162 | 1.13e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055980.t1 | AT5G06690 | 62.733 | 161 | 55 | 2 | 31 | 187 | 51 | 210 | 1.58e-71 | 215 |
| MS.gene055980.t1 | AT5G04260 | 59.483 | 116 | 47 | 0 | 70 | 185 | 73 | 188 | 8.27e-46 | 149 |
| MS.gene055980.t1 | AT5G06690 | 56.098 | 123 | 49 | 2 | 31 | 149 | 51 | 172 | 9.19e-45 | 147 |
| MS.gene055980.t1 | AT5G06690 | 56.098 | 123 | 49 | 2 | 31 | 149 | 51 | 172 | 9.64e-45 | 147 |
| MS.gene055980.t1 | AT5G06690 | 47.525 | 101 | 48 | 2 | 31 | 127 | 51 | 150 | 2.10e-28 | 103 |
| MS.gene055980.t1 | AT3G15360 | 31.313 | 99 | 63 | 2 | 71 | 169 | 84 | 177 | 8.67e-13 | 64.3 |
| MS.gene055980.t1 | AT1G19730 | 33.708 | 89 | 54 | 2 | 83 | 171 | 20 | 103 | 2.47e-11 | 58.5 |
| MS.gene055980.t1 | AT1G45145 | 28.319 | 113 | 74 | 3 | 74 | 186 | 6 | 111 | 6.30e-11 | 57.8 |
Find 32 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATCCACATAATAAAATT+TGG | 0.205819 | 7.4:+15427686 | None:intergenic |
| GCTTCAAATAGATGCATTTC+CGG | 0.251648 | 7.4:+15427947 | None:intergenic |
| CCAGAAAATGCCAACAATTC+AGG | 0.318570 | 7.4:-15427531 | MS.gene055980:intron |
| TTATGTCGCAAGAGTTGTTT+TGG | 0.321334 | 7.4:-15429662 | MS.gene055980:CDS |
| CAAAAGGTTATGTCTATTAT+AGG | 0.327245 | 7.4:-15429773 | None:intergenic |
| CAATGACTAGCCAGCCCTTA+TGG | 0.332185 | 7.4:+15427364 | None:intergenic |
| TGTTTGCAGCTTTGGAAAGA+TGG | 0.388102 | 7.4:-15427414 | MS.gene055980:intron |
| CTCAGTGCTTTGCAAGTGGC+AGG | 0.393125 | 7.4:-15429694 | MS.gene055980:CDS |
| AAGACCAAGTTCAGTAGAAA+TGG | 0.398191 | 7.4:-15429561 | MS.gene055980:CDS |
| CATCTATTTGAAGCCAAAGT+TGG | 0.425150 | 7.4:-15427938 | MS.gene055980:CDS |
| GAAGTGATTGGAGGCCATAA+GGG | 0.439766 | 7.4:-15427378 | MS.gene055980:CDS |
| AGAAGTGATTGGAGGCCATA+AGG | 0.448140 | 7.4:-15427379 | MS.gene055980:CDS |
| GCTTCCATTTCTACTGAACT+TGG | 0.448382 | 7.4:+15429557 | None:intergenic |
| AAATACCAGTCAATAATGAT+AGG | 0.456728 | 7.4:+15429476 | None:intergenic |
| GAGATGAAAGAAGAAGTGAT+TGG | 0.459326 | 7.4:-15427390 | MS.gene055980:CDS |
| TGAGGACGCACCTGAATTGT+TGG | 0.470980 | 7.4:+15427521 | None:intergenic |
| ATAGGATGGCTGCTTGGTGC+CGG | 0.493739 | 7.4:-15427966 | MS.gene055980:intron |
| GAACTTGGTCTTGACAAATC+TGG | 0.499934 | 7.4:+15429572 | None:intergenic |
| TGATTGGAGGCCATAAGGGC+TGG | 0.518680 | 7.4:-15427374 | MS.gene055980:CDS |
| TCAAATATAGGATGGCTGCT+TGG | 0.529801 | 7.4:-15427972 | MS.gene055980:intron |
| TCAGTGCTTTGCAAGTGGCA+GGG | 0.535743 | 7.4:-15429693 | MS.gene055980:CDS |
| AACAAAAGAAGATTAGAAGG+AGG | 0.550839 | 7.4:-15429619 | MS.gene055980:CDS |
| ATTCCTCAGTGCTTTGCAAG+TGG | 0.552145 | 7.4:-15429698 | MS.gene055980:CDS |
| CTGAGCCTATCATTATTGAC+TGG | 0.566128 | 7.4:-15429481 | MS.gene055980:intron |
| TTACTTGGTGTCAAATTCAG+CGG | 0.589432 | 7.4:+15427906 | None:intergenic |
| ATGAAAGAAGAAGTGATTGG+AGG | 0.597943 | 7.4:-15427387 | MS.gene055980:CDS |
| TAGAAGGAGGAATTTACGTG+TGG | 0.607009 | 7.4:-15429606 | MS.gene055980:CDS |
| CCACGCTTGACTAATGTCTG+AGG | 0.613310 | 7.4:+15427654 | None:intergenic |
| CCTCAGACATTAGTCAAGCG+TGG | 0.642739 | 7.4:-15427654 | MS.gene055980:CDS |
| ATTTACGTGTGGAAGCTATG+TGG | 0.678095 | 7.4:-15429595 | MS.gene055980:CDS |
| CTGCCACTTGCAAAGCACTG+AGG | 0.688803 | 7.4:+15429695 | None:intergenic |
| GAATACACTGTTCATCTCTG+TGG | 0.691310 | 7.4:+15429717 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATACAATAATAAAATTTAA+AGG | + | chr7.4:15427768-15427787 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTTCTTTTATTG+TGG | + | chr7.4:15429622-15429641 | None:intergenic | 10.0% |
| !!! | CTTTAAATTTTATTATTGTA+TGG | - | chr7.4:15427766-15427785 | MS.gene055980:intron | 10.0% |
| !!! | TATACCTATATATAAAATTT+TGG | + | chr7.4:15429047-15429066 | None:intergenic | 10.0% |
| !!! | TTTTGCAATTTTAATAAAAT+TGG | - | chr7.4:15428911-15428930 | MS.gene055980:intron | 10.0% |
| !! | AAACAAAGTTAAAGTAAATA+TGG | + | chr7.4:15427821-15427840 | None:intergenic | 15.0% |
| !! | ATAAGAAAATAATTAACCAA+TGG | - | chr7.4:15429329-15429348 | MS.gene055980:intron | 15.0% |
| !! | ATAATAAAATTTAAAGGCTA+AGG | + | chr7.4:15427762-15427781 | None:intergenic | 15.0% |
| !! | GTTATAAATTACAAATGAAA+AGG | + | chr7.4:15428987-15429006 | None:intergenic | 15.0% |
| !! | TAAGAAAATAATTAACCAAT+GGG | - | chr7.4:15429330-15429349 | MS.gene055980:intron | 15.0% |
| !! | TAAGTTCTTATTAAAATATG+AGG | - | chr7.4:15427916-15427935 | MS.gene055980:CDS | 15.0% |
| !! | TACTTATTGTAACATAAATA+AGG | + | chr7.4:15428535-15428554 | None:intergenic | 15.0% |
| !! | TATATAGATTAATTTAGTTG+AGG | + | chr7.4:15429593-15429612 | None:intergenic | 15.0% |
| !!! | ATTGGTTAATTATTTTCTTA+TGG | + | chr7.4:15429330-15429349 | None:intergenic | 15.0% |
| !!! | ATTTTATTATTGTATGGTTA+CGG | - | chr7.4:15427772-15427791 | MS.gene055980:intron | 15.0% |
| !!! | TTGTTTAACTTTAAAATATG+AGG | - | chr7.4:15427835-15427854 | MS.gene055980:intron | 15.0% |
| !! | AAAAACAAAAGAAGATTAGA+AGG | - | chr7.4:15427471-15427490 | MS.gene055980:intron | 20.0% |
| !! | ATATTATACTTTCAACAAGA+TGG | + | chr7.4:15428501-15428520 | None:intergenic | 20.0% |
| !! | TTAAAACCATTAACATTTGT+AGG | + | chr7.4:15428875-15428894 | None:intergenic | 20.0% |
| !!! | AATTATTTTCTTATGGTTGA+AGG | + | chr7.4:15429323-15429342 | None:intergenic | 20.0% |
| !!! | ATGATTTTGTTTTGAAAGAA+TGG | + | chr7.4:15429276-15429295 | None:intergenic | 20.0% |
| !!! | CACACCAAAATTTTATATAT+AGG | - | chr7.4:15429040-15429059 | MS.gene055980:intron | 20.0% |
| !!! | CTTCTAATTTTATTCTTACA+TGG | + | chr7.4:15429011-15429030 | None:intergenic | 20.0% |
| !!! | TTATGAAAGATAATTTGTCA+AGG | + | chr7.4:15427682-15427701 | None:intergenic | 20.0% |
| ! | AAATACCAGTCAATAATGAT+AGG | + | chr7.4:15427620-15427639 | None:intergenic | 25.0% |
| ! | AAGGATAAGATAGAAGAAAA+AGG | + | chr7.4:15427877-15427896 | None:intergenic | 25.0% |
| ! | AATAAGTAAGTTAGCAGTTA+GGG | - | chr7.4:15428547-15428566 | MS.gene055980:intron | 25.0% |
| ! | CTTGACAAAAAAAAGAAATG+TGG | + | chr7.4:15428628-15428647 | None:intergenic | 25.0% |
| ! | GACATCCACATAATAAAATT+TGG | + | chr7.4:15429410-15429429 | None:intergenic | 25.0% |
| ! | GACTAATATACTTTCTTTAC+AGG | - | chr7.4:15428097-15428116 | MS.gene055980:intron | 25.0% |
| ! | TAACTTCAAGTAAACTAAAC+TGG | - | chr7.4:15428146-15428165 | MS.gene055980:intron | 25.0% |
| ! | TATATGCCTACAAATGTTAA+TGG | - | chr7.4:15428866-15428885 | MS.gene055980:intron | 25.0% |
| ! | TATCTTATCCTTGGATAAAT+TGG | - | chr7.4:15427885-15427904 | MS.gene055980:intron | 25.0% |
| ! | TATTTGAGAAAACGAAGTTA+TGG | + | chr7.4:15429108-15429127 | None:intergenic | 25.0% |
| !! | AACTTCGTTTTCTCAAATAT+AGG | - | chr7.4:15429109-15429128 | MS.gene055980:intron | 25.0% |
| !! | AACTTTAATGCACCATATTT+TGG | + | chr7.4:15428294-15428313 | None:intergenic | 25.0% |
| !! | ACTTTAATGCACCATATTTT+GGG | + | chr7.4:15428293-15428312 | None:intergenic | 25.0% |
| !! | GACTATAGTTAGATATTTTG+AGG | - | chr7.4:15427961-15427980 | MS.gene055980:CDS | 25.0% |
| !! | TTTTTCTTCTATCTTATCCT+TGG | - | chr7.4:15427876-15427895 | MS.gene055980:intron | 25.0% |
| !!! | CATTTTATTAGAGGTATAGT+CGG | + | chr7.4:15428346-15428365 | None:intergenic | 25.0% |
| !!! | CTTTAAAATATGAGGTATTG+CGG | - | chr7.4:15427843-15427862 | MS.gene055980:intron | 25.0% |
| !!! | GTTTTAAAAGCAAGAAATTG+TGG | - | chr7.4:15428888-15428907 | MS.gene055980:intron | 25.0% |
| !!! | TTTAAAATATGAGGTATTGC+GGG | - | chr7.4:15427844-15427863 | MS.gene055980:intron | 25.0% |
| !!! | TTTTTTGTCAAGTTGTCTAA+TGG | - | chr7.4:15428636-15428655 | MS.gene055980:intron | 25.0% |
| AACAAAAGAAGATTAGAAGG+AGG | - | chr7.4:15427474-15427493 | MS.gene055980:intron | 30.0% | |
| AGAAATGTGGATAGATGTAT+TGG | + | chr7.4:15428615-15428634 | None:intergenic | 30.0% | |
| ATTAAAATATGAGGTGCAGT+GGG | - | chr7.4:15427925-15427944 | MS.gene055980:CDS | 30.0% | |
| CAATAAGCGTAATAGAAATG+TGG | + | chr7.4:15428779-15428798 | None:intergenic | 30.0% | |
| CAATAAGTAAGTTAGCAGTT+AGG | - | chr7.4:15428546-15428565 | MS.gene055980:intron | 30.0% | |
| GATCTAATCCAATTTATCCA+AGG | + | chr7.4:15427896-15427915 | None:intergenic | 30.0% | |
| TATTAAAATATGAGGTGCAG+TGG | - | chr7.4:15427924-15427943 | MS.gene055980:CDS | 30.0% | |
| TCTAATAAAATGAACTCCGA+TGG | - | chr7.4:15428354-15428373 | MS.gene055980:intron | 30.0% | |
| TTCAAGTAAACTAAACTGGA+AGG | - | chr7.4:15428150-15428169 | MS.gene055980:intron | 30.0% | |
| TTGCATAATTGAATTCCCAT+TGG | + | chr7.4:15429348-15429367 | None:intergenic | 30.0% | |
| ! | AAATCTATGCATTGGTACAT+TGG | + | chr7.4:15428945-15428964 | None:intergenic | 30.0% |
| ! | AGTAGATGCTTGATATTTTC+TGG | - | chr7.4:15429475-15429494 | MS.gene055980:intron | 30.0% |
| ! | ATCGGAGTTCATTTTATTAG+AGG | + | chr7.4:15428355-15428374 | None:intergenic | 30.0% |
| ! | CAGAGCCAAATTTTATTATG+TGG | - | chr7.4:15429402-15429421 | MS.gene055980:intron | 30.0% |
| ! | TCGTTTTCTCAAATATAGGA+TGG | - | chr7.4:15429113-15429132 | MS.gene055980:intron | 30.0% |
| ! | TTAATTTCAACATGGCTTTG+AGG | - | chr7.4:15427795-15427814 | MS.gene055980:intron | 30.0% |
| !! | TTAAAATATGAGGTATTGCG+GGG | - | chr7.4:15427845-15427864 | MS.gene055980:intron | 30.0% |
| !!! | CTTTTTCAAGGTGAATAAGT+GGG | - | chr7.4:15428670-15428689 | MS.gene055980:intron | 30.0% |
| !!! | TGAGGATATTTTTTTGCGTT+GGG | - | chr7.4:15427979-15427998 | MS.gene055980:intron | 30.0% |
| !!! | TTGAGGATATTTTTTTGCGT+TGG | - | chr7.4:15427978-15427997 | MS.gene055980:intron | 30.0% |
| !!! | TTTTTCAAGGTGAATAAGTG+GGG | - | chr7.4:15428671-15428690 | MS.gene055980:intron | 30.0% |
| AAACTGGAAGGTTTACTTGA+AGG | - | chr7.4:15428162-15428181 | MS.gene055980:intron | 35.0% | |
| AAGACCAAGTTCAGTAGAAA+TGG | - | chr7.4:15427532-15427551 | MS.gene055980:intron | 35.0% | |
| AATAAAATGAACTCCGATGG+AGG | - | chr7.4:15428357-15428376 | MS.gene055980:intron | 35.0% | |
| ACATCCATTGTTATATGCAG+GGG | + | chr7.4:15428718-15428737 | None:intergenic | 35.0% | |
| AGACATCCATTGTTATATGC+AGG | + | chr7.4:15428720-15428739 | None:intergenic | 35.0% | |
| AGTTTGAACTCAATTCAGAG+AGG | - | chr7.4:15428310-15428329 | MS.gene055980:intron | 35.0% | |
| ATAAAATGAACTCCGATGGA+GGG | - | chr7.4:15428358-15428377 | MS.gene055980:intron | 35.0% | |
| ATGAAAGAAGAAGTGATTGG+AGG | - | chr7.4:15429706-15429725 | MS.gene055980:CDS | 35.0% | |
| CCACTTATTCACCTTGAAAA+AGG | + | chr7.4:15428672-15428691 | None:intergenic | 35.0% | |
| GAAGGTTTACTTGAAGGTTA+TGG | - | chr7.4:15428168-15428187 | MS.gene055980:intron | 35.0% | |
| GACATCCATTGTTATATGCA+GGG | + | chr7.4:15428719-15428738 | None:intergenic | 35.0% | |
| GAGATGAAAGAAGAAGTGAT+TGG | - | chr7.4:15429703-15429722 | MS.gene055980:CDS | 35.0% | |
| GCAGTTGAAAATCTATGCAT+TGG | + | chr7.4:15428953-15428972 | None:intergenic | 35.0% | |
| GCTTCAAATAGATGCATTTC+CGG | + | chr7.4:15429149-15429168 | None:intergenic | 35.0% | |
| GGTTACGGTTAATTTCAACA+TGG | - | chr7.4:15427787-15427806 | MS.gene055980:intron | 35.0% | |
| TAGTCCATTCAAATGTCTGT+GGG | + | chr7.4:15428082-15428101 | None:intergenic | 35.0% | |
| TTAAAATATGAGGTGCAGTG+GGG | - | chr7.4:15427926-15427945 | MS.gene055980:CDS | 35.0% | |
| TTAGTCCATTCAAATGTCTG+TGG | + | chr7.4:15428083-15428102 | None:intergenic | 35.0% | |
| ! | ATGCATTGGTACATTGGTTA+AGG | + | chr7.4:15428939-15428958 | None:intergenic | 35.0% |
| ! | ATGTGTGATACCAATTTTGC+AGG | - | chr7.4:15429068-15429087 | MS.gene055980:intron | 35.0% |
| ! | CATCTATTTGAAGCCAAAGT+TGG | - | chr7.4:15429155-15429174 | MS.gene055980:intron | 35.0% |
| ! | CTGAATTGTTGGCATTTTCT+GGG | + | chr7.4:15429564-15429583 | None:intergenic | 35.0% |
| ! | TTATGTCGCAAGAGTTGTTT+TGG | - | chr7.4:15427431-15427450 | MS.gene055980:intron | 35.0% |
| !! | ACACTAGTGACTAGTTTACT+TGG | + | chr7.4:15429205-15429224 | None:intergenic | 35.0% |
| !! | GCTAGAATTCACCTTTTTCA+AGG | - | chr7.4:15428658-15428677 | MS.gene055980:intron | 35.0% |
| !! | TATGTCGCAAGAGTTGTTTT+GGG | - | chr7.4:15427432-15427451 | MS.gene055980:intron | 35.0% |
| !! | TTACTTGGTGTCAAATTCAG+CGG | + | chr7.4:15429190-15429209 | None:intergenic | 35.0% |
| !!! | CCTTTTTCAAGGTGAATAAG+TGG | - | chr7.4:15428669-15428688 | MS.gene055980:intron | 35.0% |
| !!! | TTTTTTTGCGTTGGGCTTTT+AGG | - | chr7.4:15427987-15428006 | MS.gene055980:intron | 35.0% |
| AACAAGTCCACCTGCAAAAT+TGG | + | chr7.4:15429081-15429100 | None:intergenic | 40.0% | |
| AGAGTAGACTCAACTCTCAT+TGG | + | chr7.4:15428270-15428289 | None:intergenic | 40.0% | |
| AGGCTAAGGATGACATACTT+TGG | + | chr7.4:15427748-15427767 | None:intergenic | 40.0% | |
| AGTCCATTCAAATGTCTGTG+GGG | + | chr7.4:15428081-15428100 | None:intergenic | 40.0% | |
| ATTGTTATATGCAGGGGTCA+AGG | + | chr7.4:15428712-15428731 | None:intergenic | 40.0% | |
| ATTTACGTGTGGAAGCTATG+TGG | - | chr7.4:15427498-15427517 | MS.gene055980:intron | 40.0% | |
| CCAGAAAATGCCAACAATTC+AGG | - | chr7.4:15429562-15429581 | MS.gene055980:CDS | 40.0% | |
| CTGAGCCTATCATTATTGAC+TGG | - | chr7.4:15427612-15427631 | MS.gene055980:intron | 40.0% | |
| GAATACACTGTTCATCTCTG+TGG | + | chr7.4:15427379-15427398 | None:intergenic | 40.0% | |
| GAGTCTACTCTCCCAAAATA+TGG | - | chr7.4:15428279-15428298 | MS.gene055980:intron | 40.0% | |
| GCTTCCATTTCTACTGAACT+TGG | + | chr7.4:15427539-15427558 | None:intergenic | 40.0% | |
| GCTTGAATTGTTTGCAGCTT+TGG | - | chr7.4:15429671-15429690 | MS.gene055980:CDS | 40.0% | |
| TAGAAGGAGGAATTTACGTG+TGG | - | chr7.4:15427487-15427506 | MS.gene055980:intron | 40.0% | |
| TCAAATATAGGATGGCTGCT+TGG | - | chr7.4:15429121-15429140 | MS.gene055980:intron | 40.0% | |
| TGCCAACTGAGTTATACTCA+CGG | - | chr7.4:15428741-15428760 | MS.gene055980:intron | 40.0% | |
| TTGACCCCTGCATATAACAA+TGG | - | chr7.4:15428711-15428730 | MS.gene055980:intron | 40.0% | |
| TTTACACAAGTTCCCTCCAT+CGG | + | chr7.4:15428373-15428392 | None:intergenic | 40.0% | |
| ! | CCTGAATTGTTGGCATTTTC+TGG | + | chr7.4:15429565-15429584 | None:intergenic | 40.0% |
| ! | GCGGCTAATTTTTCCAACTT+TGG | + | chr7.4:15429171-15429190 | None:intergenic | 40.0% |
| ! | TGTGATACCAATTTTGCAGG+TGG | - | chr7.4:15429071-15429090 | MS.gene055980:intron | 40.0% |
| !! | GAACTTGGTCTTGACAAATC+TGG | + | chr7.4:15427524-15427543 | None:intergenic | 40.0% |
| !! | TGTTTGCAGCTTTGGAAAGA+TGG | - | chr7.4:15429679-15429698 | MS.gene055980:CDS | 40.0% |
| AGAAGTGATTGGAGGCCATA+AGG | - | chr7.4:15429714-15429733 | MS.gene055980:CDS | 45.0% | |
| AGATACAGATTGTGAGGGTG+TGG | + | chr7.4:15428054-15428073 | None:intergenic | 45.0% | |
| ATTCCTCAGTGCTTTGCAAG+TGG | - | chr7.4:15427395-15427414 | MS.gene055980:CDS | 45.0% | |
| CCAACTGAGTTATACTCACG+GGG | - | chr7.4:15428743-15428762 | MS.gene055980:intron | 45.0% | |
| GAAGTGATTGGAGGCCATAA+GGG | - | chr7.4:15429715-15429734 | MS.gene055980:CDS | 45.0% | |
| GCCAACTGAGTTATACTCAC+GGG | - | chr7.4:15428742-15428761 | MS.gene055980:intron | 45.0% | |
| GGGTGAGATACAGATTGTGA+GGG | + | chr7.4:15428059-15428078 | None:intergenic | 45.0% | |
| GTAAGTTAGCAGTTAGGGTG+AGG | - | chr7.4:15428552-15428571 | MS.gene055980:intron | 45.0% | |
| GTCCATTCAAATGTCTGTGG+GGG | + | chr7.4:15428080-15428099 | None:intergenic | 45.0% | |
| TCCATTCAAATGTCTGTGGG+GGG | + | chr7.4:15428079-15428098 | None:intergenic | 45.0% | |
| ! | GATACAGATTGTGAGGGTGT+GGG | + | chr7.4:15428053-15428072 | None:intergenic | 45.0% |
| ACCCCCCACAGACATTTGAA+TGG | - | chr7.4:15428075-15428094 | MS.gene055980:intron | 50.0% | |
| CCACGCTTGACTAATGTCTG+AGG | + | chr7.4:15429442-15429461 | None:intergenic | 50.0% | |
| CCCCGTGAGTATAACTCAGT+TGG | + | chr7.4:15428746-15428765 | None:intergenic | 50.0% | |
| CCTCAGACATTAGTCAAGCG+TGG | - | chr7.4:15429439-15429458 | MS.gene055980:intron | 50.0% | |
| GGGGTGAGATACAGATTGTG+AGG | + | chr7.4:15428060-15428079 | None:intergenic | 50.0% | |
| TCAGTGCTTTGCAAGTGGCA+GGG | - | chr7.4:15427400-15427419 | MS.gene055980:CDS | 50.0% | |
| TGAGGACGCACCTGAATTGT+TGG | + | chr7.4:15429575-15429594 | None:intergenic | 50.0% | |
| ! | AGGTGAATAAGTGGGGTGTC+CGG | - | chr7.4:15428678-15428697 | MS.gene055980:intron | 50.0% |
| ! | CAATGACTAGCCAGCCCTTA+TGG | + | chr7.4:15429732-15429751 | None:intergenic | 50.0% |
| CTCAGTGCTTTGCAAGTGGC+AGG | - | chr7.4:15427399-15427418 | MS.gene055980:CDS | 55.0% | |
| TGATTGGAGGCCATAAGGGC+TGG | - | chr7.4:15429719-15429738 | MS.gene055980:CDS | 55.0% | |
| ! | GGTGAATAAGTGGGGTGTCC+GGG | - | chr7.4:15428679-15428698 | MS.gene055980:intron | 55.0% |
| ! | GTGAATAAGTGGGGTGTCCG+GGG | - | chr7.4:15428680-15428699 | MS.gene055980:intron | 55.0% |
| !! | ATAGGATGGCTGCTTGGTGC+CGG | - | chr7.4:15429127-15429146 | MS.gene055980:intron | 55.0% |
| !! | CTGCCACTTGCAAAGCACTG+AGG | + | chr7.4:15427401-15427420 | None:intergenic | 55.0% |
| AGGGGTCAAGGTTCGAACCC+CGG | + | chr7.4:15428700-15428719 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 15427329 | 15429786 | 15427329 | ID=MS.gene055980 |
| chr7.4 | mRNA | 15427329 | 15429786 | 15427329 | ID=MS.gene055980.t1;Parent=MS.gene055980 |
| chr7.4 | exon | 15429482 | 15429786 | 15429482 | ID=MS.gene055980.t1.exon1;Parent=MS.gene055980.t1 |
| chr7.4 | CDS | 15429482 | 15429786 | 15429482 | ID=cds.MS.gene055980.t1;Parent=MS.gene055980.t1 |
| chr7.4 | exon | 15427910 | 15427984 | 15427910 | ID=MS.gene055980.t1.exon2;Parent=MS.gene055980.t1 |
| chr7.4 | CDS | 15427910 | 15427984 | 15427910 | ID=cds.MS.gene055980.t1;Parent=MS.gene055980.t1 |
| chr7.4 | exon | 15427644 | 15427710 | 15427644 | ID=MS.gene055980.t1.exon3;Parent=MS.gene055980.t1 |
| chr7.4 | CDS | 15427644 | 15427710 | 15427644 | ID=cds.MS.gene055980.t1;Parent=MS.gene055980.t1 |
| chr7.4 | exon | 15427532 | 15427549 | 15427532 | ID=MS.gene055980.t1.exon4;Parent=MS.gene055980.t1 |
| chr7.4 | CDS | 15427532 | 15427549 | 15427532 | ID=cds.MS.gene055980.t1;Parent=MS.gene055980.t1 |
| chr7.4 | exon | 15427329 | 15427427 | 15427329 | ID=MS.gene055980.t1.exon5;Parent=MS.gene055980.t1 |
| chr7.4 | CDS | 15427329 | 15427427 | 15427329 | ID=cds.MS.gene055980.t1;Parent=MS.gene055980.t1 |
| Gene Sequence |
| Protein sequence |
