AlfalfaGEDB | MS.gene064919

M. sativa cultivar XinJiangDaYe / MS.gene064919

KEGG: -
GO: -
PFAM: PF11947.11

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064919.t1	XP_013452267.1	96.4	138	5	0	1	138	46	183	1.90E-67	265

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064919.t1	Q9LTD9	43.5	131	66	1	3	133	45	167	1.9e-23	110.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064919.t1	A0A072UKD7	96.4	138	5	0	1	138	46	183	1.4e-67	265.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049346	MS.gene064919	0.837612	4.69E-57	-1.69E-46
MS.gene049577	MS.gene064919	0.808478	3.04E-50	-1.69E-46
MS.gene049661	MS.gene064919	0.81906	1.42E-52	-1.69E-46
MS.gene049662	MS.gene064919	0.821163	4.67E-53	-1.69E-46
MS.gene049758	MS.gene064919	0.828724	7.67E-55	-1.69E-46
MS.gene049910	MS.gene064919	0.808095	3.66E-50	-1.69E-46
MS.gene050076	MS.gene064919	0.855824	4.87E-62	-1.69E-46
MS.gene050301	MS.gene064919	0.821791	3.35E-53	-1.69E-46
MS.gene050397	MS.gene064919	0.859697	3.46E-63	-1.69E-46
MS.gene050404	MS.gene064919	0.915971	3.12E-85	-1.69E-46
MS.gene050406	MS.gene064919	0.922517	8.88E-89	-1.69E-46
MS.gene050426	MS.gene064919	-0.818234	2.18E-52	-1.69E-46
MS.gene050464	MS.gene064919	0.85294	3.32E-61	-1.69E-46
MS.gene050529	MS.gene064919	0.879303	1.39E-69	-1.69E-46
MS.gene050642	MS.gene064919	0.828043	1.12E-54	-1.69E-46
MS.gene050812	MS.gene064919	0.813609	2.35E-51	-1.69E-46
MS.gene05101	MS.gene064919	0.834547	2.81E-56	-1.69E-46
MS.gene051171	MS.gene064919	0.869345	3.32E-66	-1.69E-46
MS.gene051240	MS.gene064919	0.834879	2.32E-56	-1.69E-46
MS.gene051242	MS.gene064919	0.856561	2.96E-62	-1.69E-46
MS.gene051244	MS.gene064919	0.820728	5.88E-53	-1.69E-46
MS.gene051471	MS.gene064919	0.864891	8.77E-65	-1.69E-46
MS.gene051582	MS.gene064919	0.850296	1.86E-60	-1.69E-46
MS.gene051983	MS.gene064919	0.808921	2.44E-50	-1.69E-46
MS.gene052077	MS.gene064919	0.840767	7.13E-58	-1.69E-46
MS.gene052078	MS.gene064919	0.868922	4.55E-66	-1.69E-46
MS.gene052178	MS.gene064919	0.842244	2.91E-58	-1.69E-46
MS.gene052188	MS.gene064919	0.806316	8.73E-50	-1.69E-46
MS.gene052253	MS.gene064919	0.819605	1.06E-52	-1.69E-46
MS.gene052290	MS.gene064919	0.824157	9.40E-54	-1.69E-46
MS.gene052310	MS.gene064919	0.868798	5.00E-66	-1.69E-46
MS.gene052322	MS.gene064919	0.810164	1.32E-50	-1.69E-46
MS.gene052326	MS.gene064919	0.806178	9.33E-50	-1.69E-46
MS.gene052340	MS.gene064919	0.855865	4.74E-62	-1.69E-46
MS.gene052758	MS.gene064919	0.803476	3.42E-49	-1.69E-46
MS.gene053073	MS.gene064919	0.806005	1.01E-49	-1.69E-46
MS.gene053103	MS.gene064919	0.806568	7.72E-50	-1.69E-46
MS.gene053209	MS.gene064919	0.800397	1.47E-48	-1.69E-46
MS.gene053330	MS.gene064919	0.852837	3.55E-61	-1.69E-46
MS.gene053557	MS.gene064919	0.846046	2.78E-59	-1.69E-46
MS.gene053836	MS.gene064919	0.857729	1.34E-62	-1.69E-46
MS.gene053907	MS.gene064919	0.871002	9.52E-67	-1.69E-46
MS.gene053928	MS.gene064919	0.809809	1.57E-50	-1.69E-46
MS.gene053971	MS.gene064919	0.915428	5.96E-85	-1.69E-46
MS.gene054123	MS.gene064919	0.804659	1.94E-49	-1.69E-46
MS.gene05413	MS.gene064919	0.800413	1.46E-48	-1.69E-46
MS.gene054349	MS.gene064919	0.808569	2.90E-50	-1.69E-46
MS.gene054918	MS.gene064919	0.805869	1.08E-49	-1.69E-46
MS.gene054983	MS.gene064919	0.843774	1.14E-58	-1.69E-46
MS.gene055116	MS.gene064919	0.833859	4.19E-56	-1.69E-46
MS.gene055254	MS.gene064919	0.805724	1.16E-49	-1.69E-46
MS.gene055277	MS.gene064919	0.850881	1.27E-60	-1.69E-46
MS.gene055370	MS.gene064919	0.841156	5.64E-58	-1.69E-46
MS.gene055422	MS.gene064919	0.831857	1.32E-55	-1.69E-46
MS.gene055428	MS.gene064919	0.87194	4.66E-67	-1.69E-46
MS.gene05553	MS.gene064919	0.846312	2.35E-59	-1.69E-46
MS.gene055712	MS.gene064919	0.80877	2.63E-50	-1.69E-46
MS.gene055980	MS.gene064919	0.834574	2.77E-56	-1.69E-46
MS.gene056407	MS.gene064919	0.822568	2.21E-53	-1.69E-46
MS.gene056451	MS.gene064919	0.874789	5.13E-68	-1.69E-46
MS.gene056612	MS.gene064919	0.87614	1.77E-68	-1.69E-46
MS.gene056633	MS.gene064919	0.861636	8.93E-64	-1.69E-46
MS.gene056659	MS.gene064919	0.809299	2.03E-50	-1.69E-46
MS.gene056664	MS.gene064919	0.877823	4.61E-69	-1.69E-46
MS.gene056772	MS.gene064919	0.802468	5.53E-49	-1.69E-46
MS.gene056796	MS.gene064919	0.801415	9.10E-49	-1.69E-46
MS.gene056899	MS.gene064919	-0.835819	1.34E-56	-1.69E-46
MS.gene056979	MS.gene064919	0.802025	6.82E-49	-1.69E-46
MS.gene05702	MS.gene064919	0.894797	1.76E-75	-1.69E-46
MS.gene057123	MS.gene064919	0.811248	7.70E-51	-1.69E-46
MS.gene057295	MS.gene064919	0.805672	1.19E-49	-1.69E-46
MS.gene05733	MS.gene064919	0.824132	9.53E-54	-1.69E-46
MS.gene057439	MS.gene064919	0.816507	5.34E-52	-1.69E-46
MS.gene058002	MS.gene064919	0.846684	1.86E-59	-1.69E-46
MS.gene058082	MS.gene064919	0.808143	3.58E-50	-1.69E-46
MS.gene05811	MS.gene064919	0.814094	1.84E-51	-1.69E-46
MS.gene058142	MS.gene064919	0.846161	2.58E-59	-1.69E-46
MS.gene058233	MS.gene064919	0.897985	8.26E-77	-1.69E-46
MS.gene058276	MS.gene064919	0.884167	2.42E-71	-1.69E-46
MS.gene058293	MS.gene064919	0.804441	2.16E-49	-1.69E-46
MS.gene058660	MS.gene064919	0.817824	2.70E-52	-1.69E-46
MS.gene058710	MS.gene064919	0.802039	6.78E-49	-1.69E-46
MS.gene058746	MS.gene064919	0.896772	2.68E-76	-1.69E-46
MS.gene059011	MS.gene064919	0.804843	1.78E-49	-1.69E-46
MS.gene05907	MS.gene064919	0.830633	2.63E-55	-1.69E-46
MS.gene059285	MS.gene064919	0.812015	5.24E-51	-1.69E-46
MS.gene059518	MS.gene064919	0.825126	5.56E-54	-1.69E-46
MS.gene059597	MS.gene064919	0.835359	1.76E-56	-1.69E-46
MS.gene059688	MS.gene064919	0.811061	8.45E-51	-1.69E-46
MS.gene059692	MS.gene064919	0.834927	2.26E-56	-1.69E-46
MS.gene059695	MS.gene064919	0.833339	5.65E-56	-1.69E-46
MS.gene05984	MS.gene064919	0.825477	4.59E-54	-1.69E-46
MS.gene059894	MS.gene064919	0.90548	4.11E-80	-1.69E-46
MS.gene06037	MS.gene064919	0.816386	5.68E-52	-1.69E-46
MS.gene060403	MS.gene064919	0.801314	9.54E-49	-1.69E-46
MS.gene060407	MS.gene064919	0.871214	8.10E-67	-1.69E-46
MS.gene06090	MS.gene064919	0.803767	2.98E-49	-1.69E-46
MS.gene061049	MS.gene064919	0.903779	2.44E-79	-1.69E-46
MS.gene061112	MS.gene064919	0.845457	4.01E-59	-1.69E-46
MS.gene061159	MS.gene064919	0.806426	8.27E-50	-1.69E-46
MS.gene061265	MS.gene064919	0.839227	1.80E-57	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064919.t1	MTR_6g051780	96.377	138	5	0	1	138	46	183	7.07e-97	276
MS.gene064919.t1	MTR_5g027010	43.617	94	53	0	38	131	100	193	3.96e-23	90.1

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064919.t1	AT5G52780	49.474	95	48	40	134	74	168	1.20e-30	108
MS.gene064919.t1	AT4G19100	43.564	101	57	38	138	49	149	5.92e-23	88.2
MS.gene064919.t1	AT4G19100	43.564	101	57	38	138	112	212	8.85e-23	89.4

Find 0 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GAAGTTATGTATAGAATAAT+CGG	-	43124:54521-54540	MS.gene064919:CDS	20.0%
!	ATCATCATCATTCTTATTGT+TGG	+	43124:54489-54508	None:intergenic	25.0%
!	ATTCTATACATAACTTCCTT+AGG	+	43124:54518-54537	None:intergenic	25.0%
!	TCATCATCATTCTTATTGTT+GGG	+	43124:54488-54507	None:intergenic	25.0%
	AAATATTTGATGCTCCTTTG+TGG	-	43124:54624-54643	MS.gene064919:CDS	30.0%
	AATACAAGAGTTGTCACAAA+TGG	+	43124:54653-54672	None:intergenic	30.0%
	ACCATCAACAAATAAAGCTA+AGG	-	43124:54439-54458	MS.gene064919:CDS	30.0%
	TGAAGAAGTTGAGAAGAATT+GGG	-	43124:54757-54776	MS.gene064919:CDS	30.0%
	TTATCATTCCTGCATCTTTA+TGG	-	43124:54584-54603	MS.gene064919:CDS	30.0%
	TTGAAGAAGTTGAGAAGAAT+TGG	-	43124:54756-54775	MS.gene064919:CDS	30.0%
!	GTTTAGTACTTTAGTTCCAA+TGG	-	43124:54553-54572	MS.gene064919:CDS	30.0%
!	TGATGATGATGATATTCCTA+AGG	-	43124:54499-54518	MS.gene064919:CDS	30.0%
!!	TCCTTAGCTTTATTTGTTGA+TGG	+	43124:54443-54462	None:intergenic	30.0%
!!	TTAGCTTTATTTGTTGATGG+TGG	+	43124:54440-54459	None:intergenic	30.0%
!!!	GTGACAACTCTTGTATTTTT+TGG	-	43124:54656-54675	MS.gene064919:CDS	30.0%
	AATGATAACCCTAATGCCAT+TGG	+	43124:54572-54591	None:intergenic	35.0%
	TTAACTCACCATAAAGATGC+AGG	+	43124:54595-54614	None:intergenic	35.0%
!	ACTTTAGTTCCAATGGCATT+AGG	-	43124:54560-54579	MS.gene064919:CDS	35.0%
!	CTTTAGTTCCAATGGCATTA+GGG	-	43124:54561-54580	MS.gene064919:CDS	35.0%
!!!	CTTGTATTTTTTGGAGCTTC+TGG	-	43124:54665-54684	MS.gene064919:CDS	35.0%
	AGAGAGAGAAGGTTCTTTGT+TGG	-	43124:54730-54749	MS.gene064919:CDS	40.0%
	GAGAGAGAAGGTTCTTTGTT+GGG	-	43124:54731-54750	MS.gene064919:CDS	40.0%
	TCTGGACTTGGAATTGCATA+TGG	-	43124:54683-54702	MS.gene064919:CDS	40.0%
!	TGGTGTGCTTTCTTCTAGTT+TGG	-	43124:54703-54722	MS.gene064919:CDS	40.0%
!!	AGAAGAATTGGGTTGAGATG+TGG	-	43124:54768-54787	MS.gene064919:CDS	40.0%
!!!	TTTTTTGGAGCTTCTGGACT+TGG	-	43124:54671-54690	MS.gene064919:CDS	40.0%
	AGTTTGGATGCAGAGAGAGA+AGG	-	43124:54719-54738	MS.gene064919:CDS	45.0%
	GTCACAAATGGCATCCACAA+AGG	+	43124:54641-54660	None:intergenic	45.0%
	TCTTGTGTTGGAGAAGCCTT+TGG	+	43124:54417-54436	None:intergenic	45.0%
!!	TGTTGATGGTGGTCTTGTGT+TGG	+	43124:54429-54448	None:intergenic	45.0%
!	AAGCCTTTGGCACTAGCTTG+TGG	+	43124:54404-54423	None:intergenic	50.0%

Chromosome	Type	Strat	End	Strand	Name
43124	gene	54401	54817	54401	ID=MS.gene064919
43124	mRNA	54401	54817	54401	ID=MS.gene064919.t1;Parent=MS.gene064919
43124	exon	54401	54817	54401	ID=MS.gene064919.t1.exon1;Parent=MS.gene064919.t1
43124	CDS	54401	54817	54401	ID=cds.MS.gene064919.t1;Parent=MS.gene064919.t1

Gene Sequence

>MS.gene064919

CCACAAGCTAGTGCCAAAGGCTTCTCCAACACAAGACCACCATCAACAAATAAAGCTAAGGATGATGTTACTATCAAGAAGAATCCCAACAATAAGAATGATGATGATGATATTCCTAAGGAAGTTATGTATAGAATAATCGGTAGAATATTGTTTAGTACTTTAGTTCCAATGGCATTAGGGTTATCATTCCTGCATCTTTATGGTGAGTTAAAAGATAGACAAATATTTGATGCTCCTTTGTGGATGCCATTTGTGACAACTCTTGTATTTTTTGGAGCTTCTGGACTTGGAATTGCATATGGTGTGCTTTCTTCTAGTTTGGATGCAGAGAGAGAAGGTTCTTTGTTGGGATTTGAAGAAGTTGAGAAGAATTGGGTTGAGATGTGGCAACAAGAGAATGTAAGTGATGATTGA

Protein sequence

>MS.gene064919.t1

PQASAKGFSNTRPPSTNKAKDDVTIKKNPNNKNDDDDIPKEVMYRIIGRILFSTLVPMALGLSFLHLYGELKDRQIFDAPLWMPFVTTLVFFGASGLGIAYGVLSSSLDAEREGSLLGFEEVEKNWVEMWQQENVSDD