Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07055.t1 | XP_003625969.1 | 96.9 | 127 | 3 | 1 | 1 | 126 | 1 | 127 | 8.00E-60 | 239.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07055.t1 | Q9LZP9 | 59.4 | 133 | 46 | 5 | 1 | 127 | 1 | 131 | 6.7e-31 | 134.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07055.t1 | G7KST6 | 96.9 | 127 | 3 | 1 | 1 | 126 | 1 | 127 | 5.8e-60 | 239.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049284 | MS.gene07055 | 0.825011 | 5.91E-54 | -1.69E-46 |
MS.gene049346 | MS.gene07055 | 0.843836 | 1.10E-58 | -1.69E-46 |
MS.gene049577 | MS.gene07055 | 0.800526 | 1.38E-48 | -1.69E-46 |
MS.gene049661 | MS.gene07055 | 0.810966 | 8.86E-51 | -1.69E-46 |
MS.gene049662 | MS.gene07055 | 0.817106 | 3.92E-52 | -1.69E-46 |
MS.gene049758 | MS.gene07055 | 0.822567 | 2.21E-53 | -1.69E-46 |
MS.gene049910 | MS.gene07055 | 0.809617 | 1.73E-50 | -1.69E-46 |
MS.gene049915 | MS.gene07055 | 0.809765 | 1.61E-50 | -1.69E-46 |
MS.gene050076 | MS.gene07055 | 0.818857 | 1.57E-52 | -1.69E-46 |
MS.gene050128 | MS.gene07055 | 0.805636 | 1.21E-49 | -1.69E-46 |
MS.gene050301 | MS.gene07055 | 0.839301 | 1.72E-57 | -1.69E-46 |
MS.gene050397 | MS.gene07055 | 0.855115 | 7.83E-62 | -1.69E-46 |
MS.gene050404 | MS.gene07055 | 0.978036 | 5.41E-145 | -1.69E-46 |
MS.gene050406 | MS.gene07055 | 0.971525 | 2.67E-133 | -1.69E-46 |
MS.gene050426 | MS.gene07055 | -0.823187 | 1.59E-53 | -1.69E-46 |
MS.gene050464 | MS.gene07055 | 0.860104 | 2.61E-63 | -1.69E-46 |
MS.gene050529 | MS.gene07055 | 0.89269 | 1.26E-74 | -1.69E-46 |
MS.gene050642 | MS.gene07055 | 0.820598 | 6.30E-53 | -1.69E-46 |
MS.gene050670 | MS.gene07055 | 0.801472 | 8.86E-49 | -1.69E-46 |
MS.gene05101 | MS.gene07055 | 0.843062 | 1.77E-58 | -1.69E-46 |
MS.gene051171 | MS.gene07055 | 0.817703 | 2.87E-52 | -1.69E-46 |
MS.gene051240 | MS.gene07055 | 0.828207 | 1.02E-54 | -1.69E-46 |
MS.gene051242 | MS.gene07055 | 0.82873 | 7.64E-55 | -1.69E-46 |
MS.gene051471 | MS.gene07055 | 0.849014 | 4.24E-60 | -1.69E-46 |
MS.gene051582 | MS.gene07055 | 0.80836 | 3.22E-50 | -1.69E-46 |
MS.gene051983 | MS.gene07055 | 0.816001 | 6.93E-52 | -1.69E-46 |
MS.gene052077 | MS.gene07055 | 0.853514 | 2.27E-61 | -1.69E-46 |
MS.gene052078 | MS.gene07055 | 0.85089 | 1.27E-60 | -1.69E-46 |
MS.gene052178 | MS.gene07055 | 0.858853 | 6.19E-63 | -1.69E-46 |
MS.gene052188 | MS.gene07055 | 0.833738 | 4.49E-56 | -1.69E-46 |
MS.gene052253 | MS.gene07055 | 0.826539 | 2.57E-54 | -1.69E-46 |
MS.gene052290 | MS.gene07055 | 0.818088 | 2.35E-52 | -1.69E-46 |
MS.gene052310 | MS.gene07055 | 0.862346 | 5.41E-64 | -1.69E-46 |
MS.gene052340 | MS.gene07055 | 0.882637 | 8.82E-71 | -1.69E-46 |
MS.gene053073 | MS.gene07055 | 0.838926 | 2.15E-57 | -1.69E-46 |
MS.gene053209 | MS.gene07055 | 0.805565 | 1.26E-49 | -1.69E-46 |
MS.gene053330 | MS.gene07055 | 0.817304 | 3.53E-52 | -1.69E-46 |
MS.gene053557 | MS.gene07055 | 0.889385 | 2.54E-73 | -1.69E-46 |
MS.gene053836 | MS.gene07055 | 0.847151 | 1.39E-59 | -1.69E-46 |
MS.gene053907 | MS.gene07055 | 0.833169 | 6.22E-56 | -1.69E-46 |
MS.gene053928 | MS.gene07055 | 0.808756 | 2.65E-50 | -1.69E-46 |
MS.gene053971 | MS.gene07055 | 0.859942 | 2.92E-63 | -1.69E-46 |
MS.gene054123 | MS.gene07055 | 0.803612 | 3.21E-49 | -1.69E-46 |
MS.gene054349 | MS.gene07055 | 0.837199 | 5.99E-57 | -1.69E-46 |
MS.gene054983 | MS.gene07055 | 0.82509 | 5.66E-54 | -1.69E-46 |
MS.gene055116 | MS.gene07055 | 0.866128 | 3.58E-65 | -1.69E-46 |
MS.gene055277 | MS.gene07055 | 0.825019 | 5.89E-54 | -1.69E-46 |
MS.gene055422 | MS.gene07055 | 0.827001 | 1.99E-54 | -1.69E-46 |
MS.gene055428 | MS.gene07055 | 0.841522 | 4.52E-58 | -1.69E-46 |
MS.gene05553 | MS.gene07055 | 0.834862 | 2.35E-56 | -1.69E-46 |
MS.gene055980 | MS.gene07055 | 0.812318 | 4.50E-51 | -1.69E-46 |
MS.gene056191 | MS.gene07055 | 0.817162 | 3.81E-52 | -1.69E-46 |
MS.gene056407 | MS.gene07055 | 0.804523 | 2.07E-49 | -1.69E-46 |
MS.gene056451 | MS.gene07055 | 0.854157 | 1.48E-61 | -1.69E-46 |
MS.gene056609 | MS.gene07055 | 0.821864 | 3.22E-53 | -1.69E-46 |
MS.gene056612 | MS.gene07055 | 0.87377 | 1.14E-67 | -1.69E-46 |
MS.gene056633 | MS.gene07055 | 0.823501 | 1.34E-53 | -1.69E-46 |
MS.gene056659 | MS.gene07055 | 0.83251 | 9.07E-56 | -1.69E-46 |
MS.gene056664 | MS.gene07055 | 0.829193 | 5.90E-55 | -1.69E-46 |
MS.gene056719 | MS.gene07055 | 0.801882 | 7.30E-49 | -1.69E-46 |
MS.gene056899 | MS.gene07055 | -0.810544 | 1.09E-50 | -1.69E-46 |
MS.gene056979 | MS.gene07055 | 0.80983 | 1.56E-50 | -1.69E-46 |
MS.gene05702 | MS.gene07055 | 0.903155 | 4.65E-79 | -1.69E-46 |
MS.gene057295 | MS.gene07055 | 0.800076 | 1.71E-48 | -1.69E-46 |
MS.gene05733 | MS.gene07055 | 0.811011 | 8.66E-51 | -1.69E-46 |
MS.gene057396 | MS.gene07055 | 0.829563 | 4.80E-55 | -1.69E-46 |
MS.gene057439 | MS.gene07055 | 0.813268 | 2.79E-51 | -1.69E-46 |
MS.gene058002 | MS.gene07055 | 0.834794 | 2.44E-56 | -1.69E-46 |
MS.gene058082 | MS.gene07055 | 0.823331 | 1.47E-53 | -1.69E-46 |
MS.gene05811 | MS.gene07055 | 0.808522 | 2.97E-50 | -1.69E-46 |
MS.gene058142 | MS.gene07055 | 0.855189 | 7.46E-62 | -1.69E-46 |
MS.gene058201 | MS.gene07055 | 0.823611 | 1.26E-53 | -1.69E-46 |
MS.gene058233 | MS.gene07055 | 0.870413 | 1.49E-66 | -1.69E-46 |
MS.gene058276 | MS.gene07055 | 0.871106 | 8.80E-67 | -1.69E-46 |
MS.gene058660 | MS.gene07055 | 0.816292 | 5.96E-52 | -1.69E-46 |
MS.gene058746 | MS.gene07055 | 0.842072 | 3.23E-58 | -1.69E-46 |
MS.gene058749 | MS.gene07055 | 0.822997 | 1.76E-53 | -1.69E-46 |
MS.gene058845 | MS.gene07055 | 0.828832 | 7.22E-55 | -1.69E-46 |
MS.gene058928 | MS.gene07055 | 0.804635 | 1.96E-49 | -1.69E-46 |
MS.gene059011 | MS.gene07055 | 0.829377 | 5.33E-55 | -1.69E-46 |
MS.gene05907 | MS.gene07055 | 0.831178 | 1.93E-55 | -1.69E-46 |
MS.gene059285 | MS.gene07055 | 0.836656 | 8.23E-57 | -1.69E-46 |
MS.gene059294 | MS.gene07055 | 0.811846 | 5.71E-51 | -1.69E-46 |
MS.gene059518 | MS.gene07055 | 0.808786 | 2.61E-50 | -1.69E-46 |
MS.gene059597 | MS.gene07055 | 0.838369 | 3.00E-57 | -1.69E-46 |
MS.gene059688 | MS.gene07055 | 0.829859 | 4.07E-55 | -1.69E-46 |
MS.gene059692 | MS.gene07055 | 0.856932 | 2.30E-62 | -1.69E-46 |
MS.gene059695 | MS.gene07055 | 0.852581 | 4.20E-61 | -1.69E-46 |
MS.gene05984 | MS.gene07055 | 0.828892 | 6.98E-55 | -1.69E-46 |
MS.gene059894 | MS.gene07055 | 0.900512 | 6.80E-78 | -1.69E-46 |
MS.gene06037 | MS.gene07055 | 0.822175 | 2.73E-53 | -1.69E-46 |
MS.gene060407 | MS.gene07055 | 0.846869 | 1.66E-59 | -1.69E-46 |
MS.gene060476 | MS.gene07055 | 0.81251 | 4.09E-51 | -1.69E-46 |
MS.gene061049 | MS.gene07055 | 0.909513 | 5.24E-82 | -1.69E-46 |
MS.gene061112 | MS.gene07055 | 0.837092 | 6.37E-57 | -1.69E-46 |
MS.gene061159 | MS.gene07055 | 0.821611 | 3.68E-53 | -1.69E-46 |
MS.gene061265 | MS.gene07055 | 0.831349 | 1.76E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07055.t1 | MTR_7g109520 | 96.094 | 128 | 4 | 1 | 1 | 127 | 1 | 128 | 6.92e-88 | 251 |
MS.gene07055.t1 | MTR_1g087030 | 64.615 | 130 | 41 | 3 | 2 | 127 | 3 | 131 | 6.47e-54 | 166 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene07055.t1 | AT3G62410 | 58.647 | 133 | 47 | 5 | 1 | 127 | 1 | 131 | 1.48e-45 | 144 |
MS.gene07055.t1 | AT2G47400 | 68.041 | 97 | 27 | 2 | 33 | 127 | 30 | 124 | 4.72e-40 | 130 |
MS.gene07055.t1 | AT1G76560 | 47.297 | 74 | 37 | 1 | 56 | 127 | 61 | 134 | 6.66e-19 | 77.0 |
Find 38 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACCTTCTTTGATATCTGTTC+TGG | 0.263996 | 7.2:+5679411 | None:intergenic |
TGTTGTTGGTGAGATCTTGA+TGG | 0.363034 | 7.2:+5679503 | None:intergenic |
GCTACGCATTCTCCACTAAC+CGG | 0.387490 | 7.2:+5679345 | None:intergenic |
AAGCTTCTCTTCAACTCATC+AGG | 0.395970 | 7.2:-5679537 | MS.gene07055:CDS |
GATGAGTTGAAGAGAAGCTT+GGG | 0.422285 | 7.2:+5679540 | None:intergenic |
TGTTCTGGTGCAGCACGAAC+TGG | 0.440452 | 7.2:+5679426 | None:intergenic |
CACCATCATTCGACCTGATC+CGG | 0.449625 | 7.2:+5679455 | None:intergenic |
CGGTGGGGTGTAGCCGGATC+AGG | 0.450264 | 7.2:-5679468 | MS.gene07055:CDS |
CGTGTCTGCAGTGGTGTTGT+TGG | 0.454736 | 7.2:+5679489 | None:intergenic |
GGTGAGATCTTGATGGTTTG+TGG | 0.456742 | 7.2:+5679510 | None:intergenic |
TGTGCTGATGACCCGGTTAG+TGG | 0.494167 | 7.2:-5679357 | MS.gene07055:CDS |
GAAGAAGGATTCTGATCCAT+TGG | 0.495582 | 7.2:-5679268 | MS.gene07055:CDS |
CGGCGAGTCATGCAAGGGAT+AGG | 0.497910 | 7.2:-5679290 | MS.gene07055:CDS |
TGGAGAATGCGTAGCAGCAT+GGG | 0.517025 | 7.2:-5679337 | MS.gene07055:CDS |
CAGACACGGTGGGGTGTAGC+CGG | 0.517241 | 7.2:-5679474 | MS.gene07055:CDS |
TGATGAGTTGAAGAGAAGCT+TGG | 0.520626 | 7.2:+5679539 | None:intergenic |
AGAGAAGCTTGGGGTTTGAA+AGG | 0.525586 | 7.2:+5679550 | None:intergenic |
TCCATTGGAGGATTACTGTA+AGG | 0.532128 | 7.2:-5679253 | MS.gene07055:CDS |
GTGCTGCGGCGAGTCATGCA+AGG | 0.540725 | 7.2:-5679296 | MS.gene07055:CDS |
GTGGAGAATGCGTAGCAGCA+TGG | 0.561567 | 7.2:-5679338 | MS.gene07055:CDS |
CGTAGCAGCATGGGATGAAG+TGG | 0.567468 | 7.2:-5679328 | MS.gene07055:CDS |
TCATGCAAGGGATAGGAAGA+AGG | 0.572718 | 7.2:-5679283 | MS.gene07055:CDS |
ACCAGAACAGATATCAAAGA+AGG | 0.574036 | 7.2:-5679412 | MS.gene07055:CDS |
AGAGACATGTGCTGATGACC+CGG | 0.581174 | 7.2:-5679364 | MS.gene07055:CDS |
TCCTTACAGTAATCCTCCAA+TGG | 0.581674 | 7.2:+5679252 | None:intergenic |
CTACGCATTCTCCACTAACC+GGG | 0.586814 | 7.2:+5679346 | None:intergenic |
AGCCGGATCAGGTCGAATGA+TGG | 0.587328 | 7.2:-5679457 | MS.gene07055:CDS |
CAACAACACCACTGCAGACA+CGG | 0.593172 | 7.2:-5679488 | MS.gene07055:CDS |
GAAGGATTCTGATCCATTGG+AGG | 0.594880 | 7.2:-5679265 | MS.gene07055:CDS |
ACACCCCACCGTGTCTGCAG+TGG | 0.598200 | 7.2:+5679480 | None:intergenic |
AACACCACTGCAGACACGGT+GGG | 0.598529 | 7.2:-5679484 | MS.gene07055:CDS |
ACACCACTGCAGACACGGTG+GGG | 0.612423 | 7.2:-5679483 | MS.gene07055:CDS |
CGGATCAGGTCGAATGATGG+TGG | 0.612425 | 7.2:-5679454 | MS.gene07055:CDS |
AGCAGCATGGGATGAAGTGG+AGG | 0.620459 | 7.2:-5679325 | MS.gene07055:CDS |
TGCTGCGGCGAGTCATGCAA+GGG | 0.625380 | 7.2:-5679295 | MS.gene07055:CDS |
CAACACCACTGCAGACACGG+TGG | 0.673443 | 7.2:-5679485 | MS.gene07055:CDS |
ATGAGTTGAAGAGAAGCTTG+GGG | 0.682917 | 7.2:+5679541 | None:intergenic |
AGTGGAGGAACTCAGTGCTG+CGG | 0.688380 | 7.2:-5679310 | MS.gene07055:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
ACCAGAACAGATATCAAAGA+AGG | - | chr7.2:5679373-5679392 | MS.gene07055:CDS | 35.0% | |
ACCTTCTTTGATATCTGTTC+TGG | + | chr7.2:5679377-5679396 | None:intergenic | 35.0% | |
AAGCTTCTCTTCAACTCATC+AGG | - | chr7.2:5679248-5679267 | MS.gene07055:CDS | 40.0% | |
GAAGAAGGATTCTGATCCAT+TGG | - | chr7.2:5679517-5679536 | MS.gene07055:CDS | 40.0% | |
TCCATTGGAGGATTACTGTA+AGG | - | chr7.2:5679532-5679551 | MS.gene07055:CDS | 40.0% | |
TCCTTACAGTAATCCTCCAA+TGG | + | chr7.2:5679536-5679555 | None:intergenic | 40.0% | |
! | ATGAGTTGAAGAGAAGCTTG+GGG | + | chr7.2:5679247-5679266 | None:intergenic | 40.0% |
! | GATGAGTTGAAGAGAAGCTT+GGG | + | chr7.2:5679248-5679267 | None:intergenic | 40.0% |
! | TGATGAGTTGAAGAGAAGCT+TGG | + | chr7.2:5679249-5679268 | None:intergenic | 40.0% |
! | TGTTGTTGGTGAGATCTTGA+TGG | + | chr7.2:5679285-5679304 | None:intergenic | 40.0% |
! | TTTTGCACTCATCAGTCTCA+GGG | + | chr7.2:5679562-5679581 | None:intergenic | 40.0% |
AGAGAAGCTTGGGGTTTGAA+AGG | + | chr7.2:5679238-5679257 | None:intergenic | 45.0% | |
GAAGGATTCTGATCCATTGG+AGG | - | chr7.2:5679520-5679539 | MS.gene07055:CDS | 45.0% | |
TCATGCAAGGGATAGGAAGA+AGG | - | chr7.2:5679502-5679521 | MS.gene07055:CDS | 45.0% | |
! | GGTGAGATCTTGATGGTTTG+TGG | + | chr7.2:5679278-5679297 | None:intergenic | 45.0% |
! | GTTTTGCACTCATCAGTCTC+AGG | + | chr7.2:5679563-5679582 | None:intergenic | 45.0% |
CAACAACACCACTGCAGACA+CGG | - | chr7.2:5679297-5679316 | MS.gene07055:CDS | 50.0% | |
CACCATCATTCGACCTGATC+CGG | + | chr7.2:5679333-5679352 | None:intergenic | 50.0% | |
CTACGCATTCTCCACTAACC+GGG | + | chr7.2:5679442-5679461 | None:intergenic | 50.0% | |
GCTACGCATTCTCCACTAAC+CGG | + | chr7.2:5679443-5679462 | None:intergenic | 50.0% | |
TGGAGAATGCGTAGCAGCAT+GGG | - | chr7.2:5679448-5679467 | MS.gene07055:CDS | 50.0% | |
! | AGAGACATGTGCTGATGACC+CGG | - | chr7.2:5679421-5679440 | MS.gene07055:CDS | 50.0% |
AACACCACTGCAGACACGGT+GGG | - | chr7.2:5679301-5679320 | MS.gene07055:CDS | 55.0% | |
AGCAGCATGGGATGAAGTGG+AGG | - | chr7.2:5679460-5679479 | MS.gene07055:CDS | 55.0% | |
AGCCGGATCAGGTCGAATGA+TGG | - | chr7.2:5679328-5679347 | MS.gene07055:CDS | 55.0% | |
AGTGGAGGAACTCAGTGCTG+CGG | - | chr7.2:5679475-5679494 | MS.gene07055:CDS | 55.0% | |
CGGATCAGGTCGAATGATGG+TGG | - | chr7.2:5679331-5679350 | MS.gene07055:CDS | 55.0% | |
CGTAGCAGCATGGGATGAAG+TGG | - | chr7.2:5679457-5679476 | MS.gene07055:CDS | 55.0% | |
GTGGAGAATGCGTAGCAGCA+TGG | - | chr7.2:5679447-5679466 | MS.gene07055:CDS | 55.0% | |
TGTTCTGGTGCAGCACGAAC+TGG | + | chr7.2:5679362-5679381 | None:intergenic | 55.0% | |
! | TGTGCTGATGACCCGGTTAG+TGG | - | chr7.2:5679428-5679447 | MS.gene07055:CDS | 55.0% |
!! | CGTGTCTGCAGTGGTGTTGT+TGG | + | chr7.2:5679299-5679318 | None:intergenic | 55.0% |
ACACCACTGCAGACACGGTG+GGG | - | chr7.2:5679302-5679321 | MS.gene07055:CDS | 60.0% | |
CAACACCACTGCAGACACGG+TGG | - | chr7.2:5679300-5679319 | MS.gene07055:CDS | 60.0% | |
CGGCGAGTCATGCAAGGGAT+AGG | - | chr7.2:5679495-5679514 | MS.gene07055:CDS | 60.0% | |
TGCTGCGGCGAGTCATGCAA+GGG | - | chr7.2:5679490-5679509 | MS.gene07055:CDS | 60.0% | |
ACACCCCACCGTGTCTGCAG+TGG | + | chr7.2:5679308-5679327 | None:intergenic | 65.0% | |
CAGACACGGTGGGGTGTAGC+CGG | - | chr7.2:5679311-5679330 | MS.gene07055:CDS | 65.0% | |
GTGCTGCGGCGAGTCATGCA+AGG | - | chr7.2:5679489-5679508 | MS.gene07055:CDS | 65.0% | |
CGGTGGGGTGTAGCCGGATC+AGG | - | chr7.2:5679317-5679336 | MS.gene07055:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 5679212 | 5679595 | 5679212 | ID=MS.gene07055 |
chr7.2 | mRNA | 5679212 | 5679595 | 5679212 | ID=MS.gene07055.t1;Parent=MS.gene07055 |
chr7.2 | exon | 5679212 | 5679595 | 5679212 | ID=MS.gene07055.t1.exon1;Parent=MS.gene07055.t1 |
chr7.2 | CDS | 5679212 | 5679595 | 5679212 | ID=cds.MS.gene07055.t1;Parent=MS.gene07055.t1 |
Gene Sequence |
Protein sequence |