Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065133.t1 | XP_013470181.1 | 55.5 | 436 | 8 | 1 | 1 | 250 | 1 | 436 | 1.20E-104 | 389.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065133.t1 | Q8RWD0 | 34.6 | 425 | 82 | 8 | 6 | 248 | 3 | 413 | 1.6e-39 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065133.t1 | A0A072VQB9 | 55.5 | 436 | 8 | 1 | 1 | 250 | 1 | 436 | 8.9e-105 | 389.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene065133.t1 | TF | C2C2-CO-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene065133 | 0.801565 | 8.48E-49 | -1.69E-46 |
| MS.gene049297 | MS.gene065133 | 0.810589 | 1.07E-50 | -1.69E-46 |
| MS.gene049346 | MS.gene065133 | 0.854971 | 8.62E-62 | -1.69E-46 |
| MS.gene049758 | MS.gene065133 | 0.826786 | 2.24E-54 | -1.69E-46 |
| MS.gene049910 | MS.gene065133 | 0.80665 | 7.42E-50 | -1.69E-46 |
| MS.gene050076 | MS.gene065133 | 0.802306 | 5.97E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene065133 | 0.822803 | 1.95E-53 | -1.69E-46 |
| MS.gene050404 | MS.gene065133 | 0.841441 | 4.74E-58 | -1.69E-46 |
| MS.gene050406 | MS.gene065133 | 0.859768 | 3.29E-63 | -1.69E-46 |
| MS.gene050464 | MS.gene065133 | 0.820402 | 6.99E-53 | -1.69E-46 |
| MS.gene050642 | MS.gene065133 | 0.803849 | 2.86E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene065133 | 0.801729 | 7.85E-49 | -1.69E-46 |
| MS.gene051240 | MS.gene065133 | 0.814201 | 1.74E-51 | -1.69E-46 |
| MS.gene05137 | MS.gene065133 | 0.803114 | 4.07E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene065133 | 0.800163 | 1.64E-48 | -1.69E-46 |
| MS.gene051582 | MS.gene065133 | 0.808389 | 3.17E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene065133 | 0.812428 | 4.26E-51 | -1.69E-46 |
| MS.gene051983 | MS.gene065133 | 0.806972 | 6.34E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene065133 | 0.813716 | 2.22E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene065133 | 0.803774 | 2.97E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene065133 | 0.807965 | 3.91E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene065133 | 0.870481 | 1.41E-66 | -1.69E-46 |
| MS.gene053907 | MS.gene065133 | 0.857556 | 1.51E-62 | -1.69E-46 |
| MS.gene053971 | MS.gene065133 | 0.843609 | 1.26E-58 | -1.69E-46 |
| MS.gene054473 | MS.gene065133 | 0.836786 | 7.63E-57 | -1.69E-46 |
| MS.gene054930 | MS.gene065133 | 0.801898 | 7.24E-49 | -1.69E-46 |
| MS.gene054942 | MS.gene065133 | 0.805576 | 1.25E-49 | -1.69E-46 |
| MS.gene054983 | MS.gene065133 | 0.85202 | 6.07E-61 | -1.69E-46 |
| MS.gene055277 | MS.gene065133 | 0.801643 | 8.17E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene065133 | 0.82532 | 5.00E-54 | -1.69E-46 |
| MS.gene055428 | MS.gene065133 | 0.834143 | 3.55E-56 | -1.69E-46 |
| MS.gene05553 | MS.gene065133 | 0.802764 | 4.80E-49 | -1.69E-46 |
| MS.gene055712 | MS.gene065133 | 0.827515 | 1.50E-54 | -1.69E-46 |
| MS.gene055980 | MS.gene065133 | 0.815092 | 1.10E-51 | -1.69E-46 |
| MS.gene056451 | MS.gene065133 | 0.861309 | 1.12E-63 | -1.69E-46 |
| MS.gene056612 | MS.gene065133 | 0.843683 | 1.21E-58 | -1.69E-46 |
| MS.gene056772 | MS.gene065133 | 0.833396 | 5.46E-56 | -1.69E-46 |
| MS.gene056899 | MS.gene065133 | -0.806758 | 7.04E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene065133 | 0.801634 | 8.21E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene065133 | 0.853919 | 1.74E-61 | -1.69E-46 |
| MS.gene057121 | MS.gene065133 | 0.809075 | 2.26E-50 | -1.69E-46 |
| MS.gene057245 | MS.gene065133 | 0.810101 | 1.36E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene065133 | 0.84454 | 7.10E-59 | -1.69E-46 |
| MS.gene057639 | MS.gene065133 | 0.823586 | 1.28E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene065133 | 0.840724 | 7.32E-58 | -1.69E-46 |
| MS.gene058142 | MS.gene065133 | 0.824507 | 7.77E-54 | -1.69E-46 |
| MS.gene058233 | MS.gene065133 | 0.82312 | 1.64E-53 | -1.69E-46 |
| MS.gene058749 | MS.gene065133 | 0.821525 | 3.85E-53 | -1.69E-46 |
| MS.gene058845 | MS.gene065133 | 0.800097 | 1.69E-48 | -1.69E-46 |
| MS.gene05907 | MS.gene065133 | 0.800114 | 1.68E-48 | -1.69E-46 |
| MS.gene059228 | MS.gene065133 | 0.804227 | 2.39E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene065133 | 0.804533 | 2.06E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene065133 | 0.861768 | 8.13E-64 | -1.69E-46 |
| MS.gene06037 | MS.gene065133 | 0.81859 | 1.81E-52 | -1.69E-46 |
| MS.gene060476 | MS.gene065133 | 0.805931 | 1.05E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene065133 | 0.880298 | 6.16E-70 | -1.69E-46 |
| MS.gene061112 | MS.gene065133 | 0.846772 | 1.76E-59 | -1.69E-46 |
| MS.gene061113 | MS.gene065133 | 0.823983 | 1.03E-53 | -1.69E-46 |
| MS.gene061265 | MS.gene065133 | 0.846818 | 1.71E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065133.t1 | MTR_1g110870 | 95.833 | 168 | 7 | 0 | 1 | 168 | 1 | 168 | 1.20e-109 | 323 |
| MS.gene065133.t1 | MTR_1g110870 | 98.780 | 82 | 1 | 0 | 169 | 250 | 355 | 436 | 5.74e-51 | 172 |
| MS.gene065133.t1 | MTR_8g104190 | 50.000 | 158 | 60 | 5 | 9 | 154 | 11 | 161 | 1.02e-37 | 137 |
| MS.gene065133.t1 | MTR_8g104190 | 64.444 | 90 | 24 | 3 | 161 | 247 | 328 | 412 | 6.32e-24 | 99.8 |
| MS.gene065133.t1 | MTR_1g013450 | 32.971 | 276 | 148 | 9 | 1 | 241 | 27 | 300 | 2.14e-24 | 99.4 |
| MS.gene065133.t1 | MTR_7g032240 | 56.757 | 74 | 28 | 1 | 165 | 238 | 282 | 351 | 1.35e-16 | 78.2 |
| MS.gene065133.t1 | MTR_5g072780 | 81.395 | 43 | 8 | 0 | 196 | 238 | 174 | 216 | 5.33e-16 | 74.7 |
| MS.gene065133.t1 | MTR_3g105710 | 63.636 | 55 | 16 | 1 | 184 | 238 | 224 | 274 | 3.50e-12 | 65.1 |
| MS.gene065133.t1 | MTR_4g127420 | 76.923 | 39 | 9 | 0 | 194 | 232 | 340 | 378 | 6.29e-12 | 65.1 |
| MS.gene065133.t1 | MTR_4g128930 | 43.820 | 89 | 39 | 2 | 164 | 241 | 255 | 343 | 4.82e-11 | 62.4 |
| MS.gene065133.t1 | MTR_7g018170 | 69.767 | 43 | 13 | 0 | 196 | 238 | 327 | 369 | 5.19e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065133.t1 | AT1G25440 | 52.941 | 153 | 52 | 3 | 6 | 151 | 3 | 142 | 2.90e-42 | 149 |
| MS.gene065133.t1 | AT1G25440 | 89.091 | 55 | 4 | 1 | 186 | 238 | 349 | 403 | 8.32e-23 | 96.7 |
| MS.gene065133.t1 | AT1G68520 | 52.000 | 150 | 55 | 5 | 6 | 153 | 3 | 137 | 5.41e-39 | 140 |
| MS.gene065133.t1 | AT1G68520 | 73.684 | 76 | 18 | 2 | 169 | 243 | 330 | 404 | 5.83e-26 | 105 |
| MS.gene065133.t1 | AT1G73870 | 40.594 | 202 | 89 | 11 | 8 | 193 | 9 | 195 | 2.54e-28 | 111 |
| MS.gene065133.t1 | AT1G73870 | 85.714 | 49 | 7 | 0 | 193 | 241 | 342 | 390 | 7.71e-20 | 87.8 |
| MS.gene065133.t1 | AT1G49130 | 40.164 | 122 | 65 | 3 | 15 | 128 | 16 | 137 | 4.60e-20 | 87.8 |
| MS.gene065133.t1 | AT1G49130 | 68.519 | 54 | 17 | 0 | 186 | 239 | 261 | 314 | 4.40e-16 | 76.6 |
| MS.gene065133.t1 | AT1G49130 | 40.164 | 122 | 65 | 3 | 15 | 128 | 23 | 144 | 4.66e-20 | 87.8 |
| MS.gene065133.t1 | AT1G49130 | 65.000 | 60 | 20 | 1 | 186 | 245 | 268 | 326 | 3.65e-16 | 77.0 |
| MS.gene065133.t1 | AT4G25990 | 58.904 | 73 | 25 | 1 | 166 | 238 | 316 | 383 | 3.34e-19 | 86.3 |
| MS.gene065133.t1 | AT5G57180 | 73.077 | 52 | 14 | 0 | 194 | 245 | 381 | 432 | 5.49e-18 | 82.8 |
| MS.gene065133.t1 | AT2G24790 | 30.709 | 254 | 136 | 9 | 7 | 238 | 36 | 271 | 1.60e-17 | 80.5 |
| MS.gene065133.t1 | AT1G07050 | 77.778 | 45 | 10 | 0 | 196 | 240 | 151 | 195 | 2.46e-16 | 75.5 |
| MS.gene065133.t1 | AT4G25990 | 48.864 | 88 | 25 | 2 | 166 | 238 | 316 | 398 | 1.07e-15 | 76.3 |
| MS.gene065133.t1 | AT4G25990 | 56.716 | 67 | 24 | 1 | 166 | 232 | 316 | 377 | 1.80e-15 | 75.5 |
| MS.gene065133.t1 | AT5G14370 | 77.778 | 45 | 10 | 0 | 194 | 238 | 292 | 336 | 1.81e-15 | 75.1 |
| MS.gene065133.t1 | AT5G57180 | 82.051 | 39 | 7 | 0 | 194 | 232 | 381 | 419 | 1.42e-13 | 70.1 |
| MS.gene065133.t1 | AT5G24930 | 52.113 | 71 | 28 | 1 | 174 | 238 | 267 | 337 | 7.01e-12 | 64.7 |
| MS.gene065133.t1 | AT1G07050 | 78.378 | 37 | 8 | 0 | 196 | 232 | 151 | 187 | 8.53e-12 | 62.8 |
| MS.gene065133.t1 | AT5G15840 | 52.308 | 65 | 28 | 2 | 1 | 62 | 41 | 105 | 3.03e-11 | 63.2 |
| MS.gene065133.t1 | AT5G57660 | 69.767 | 43 | 13 | 0 | 196 | 238 | 285 | 327 | 5.65e-11 | 62.0 |
| MS.gene065133.t1 | AT3G02380 | 69.767 | 43 | 13 | 0 | 196 | 238 | 278 | 320 | 5.99e-11 | 62.0 |
| MS.gene065133.t1 | AT3G02380 | 55.102 | 49 | 22 | 0 | 14 | 62 | 10 | 58 | 8.32e-11 | 61.6 |
| MS.gene065133.t1 | AT5G15840 | 52.308 | 65 | 28 | 2 | 1 | 62 | 41 | 105 | 6.62e-11 | 61.6 |
Find 56 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGGTGTTCTTGCCTTCT+TGG | 0.140899 | 1.2:+82112497 | None:intergenic |
| GAAGAATTCATCACCATTAA+TGG | 0.149936 | 1.2:+82112545 | None:intergenic |
| ACAAATCTCCCTTTCATTCT+TGG | 0.172964 | 1.2:+82111125 | None:intergenic |
| ATTATTTATCAGGGAACTTT+TGG | 0.202916 | 1.2:-82111317 | MS.gene065133:intron |
| TTTCATCTTGTGCCGGATTT+AGG | 0.234999 | 1.2:-82112408 | MS.gene065133:CDS |
| TATGGTGAGTTTGGTGGATA+TGG | 0.250845 | 1.2:-82111275 | MS.gene065133:CDS |
| ATGAAGCGCAACTTCTTTAC+AGG | 0.254107 | 1.2:-82112350 | MS.gene065133:CDS |
| CTGCCTCCATCTACCGTTAC+TGG | 0.277791 | 1.2:+82111245 | None:intergenic |
| GCGTCGTACAAGTCCATTAA+TGG | 0.290118 | 1.2:-82112558 | MS.gene065133:CDS |
| ACGGAGGTTCATTATGCTTA+TGG | 0.290853 | 1.2:-82111293 | MS.gene065133:CDS |
| GCAACAGAAGGATCGAAAAT+TGG | 0.331767 | 1.2:+82112324 | None:intergenic |
| CATTATGCTTATGGTGAGTT+TGG | 0.336402 | 1.2:-82111284 | MS.gene065133:CDS |
| TTCTTGGTGAAGCCAGAAAA+AGG | 0.344434 | 1.2:+82112513 | None:intergenic |
| GGTTGTTCTCAAAGAAAATA+AGG | 0.347288 | 1.2:-82111181 | MS.gene065133:CDS |
| AGAAAATAAGGTACGAGGTT+AGG | 0.382846 | 1.2:-82111169 | MS.gene065133:CDS |
| ATTCCTCGCTGGTTCGCTGC+TGG | 0.398768 | 1.2:+82112446 | None:intergenic |
| TGTCATCCAGTAACGGTAGA+TGG | 0.408098 | 1.2:-82111251 | MS.gene065133:CDS |
| GAAGGCAAGAACACCAAGAC+AGG | 0.424009 | 1.2:-82112493 | MS.gene065133:CDS |
| GCAGAGAGGCAAGGGTTTCA+AGG | 0.431755 | 1.2:-82111226 | MS.gene065133:CDS |
| GATTTGTGTTTCCCCTGTCT+TGG | 0.455579 | 1.2:+82112480 | None:intergenic |
| TGAAAGGGAGATTTGTGAAG+AGG | 0.460030 | 1.2:-82111118 | MS.gene065133:CDS |
| AAATCCGGCACAAGATGAAA+CGG | 0.483022 | 1.2:+82112411 | None:intergenic |
| CCTTCAGTTGGTTCAACTGA+AGG | 0.490709 | 1.2:-82112282 | MS.gene065133:CDS |
| TGTACTAGTCCTCCTTCAGT+TGG | 0.493939 | 1.2:-82112294 | MS.gene065133:CDS |
| CTGTTGGAGGCAAAACTGCT+AGG | 0.494037 | 1.2:-82112719 | MS.gene065133:CDS |
| TATGCTTATGGTGAGTTTGG+TGG | 0.509644 | 1.2:-82111281 | MS.gene065133:CDS |
| AGATGGAGGCAGAGAGGCAA+GGG | 0.513332 | 1.2:-82111234 | MS.gene065133:CDS |
| GAAAGGGAGATTTGTGAAGA+GGG | 0.514753 | 1.2:-82111117 | MS.gene065133:CDS |
| GAGAAGAGACCAAGAATGAA+AGG | 0.514881 | 1.2:-82111134 | MS.gene065133:CDS |
| ATATTATTATTATTCCTCGC+TGG | 0.519712 | 1.2:+82112435 | None:intergenic |
| AATCCGGCACAAGATGAAAC+GGG | 0.522679 | 1.2:+82112412 | None:intergenic |
| GGTTCAACTGAAGGAGGACT+AGG | 0.524616 | 1.2:-82112273 | MS.gene065133:CDS |
| ACTTCATCGAAACCTAAATC+CGG | 0.535576 | 1.2:+82112396 | None:intergenic |
| AACGTAGCAAACGCTGTTGG+AGG | 0.555203 | 1.2:-82112732 | MS.gene065133:CDS |
| CCTCGCTGGTTCGCTGCTGG+AGG | 0.557584 | 1.2:+82112449 | None:intergenic |
| AGAAGAGACCAAGAATGAAA+GGG | 0.570209 | 1.2:-82111133 | MS.gene065133:CDS |
| TAGATGGAGGCAGAGAGGCA+AGG | 0.578587 | 1.2:-82111235 | MS.gene065133:CDS |
| TGTTGGAGGCAAAACTGCTA+GGG | 0.581207 | 1.2:-82112718 | MS.gene065133:CDS |
| TATCCCGTTTCATCTTGTGC+CGG | 0.584262 | 1.2:-82112415 | MS.gene065133:CDS |
| TCAGTTGGTTCAACTGAAGG+AGG | 0.585447 | 1.2:-82112279 | MS.gene065133:CDS |
| GGTGATGAATTCTTCAATTG+TGG | 0.591451 | 1.2:-82112537 | MS.gene065133:CDS |
| AGGAAATGTTGGAACTGCAA+AGG | 0.601959 | 1.2:+82111091 | None:intergenic |
| CCTTCAGTTGAACCAACTGA+AGG | 0.603328 | 1.2:+82112282 | None:intergenic |
| TCAGTTGAACCAACTGAAGG+AGG | 0.611596 | 1.2:+82112285 | None:intergenic |
| TGAAGCGCAACTTCTTTACA+GGG | 0.630911 | 1.2:-82112349 | MS.gene065133:CDS |
| GTACATAATTCAGCAACAGA+AGG | 0.631423 | 1.2:+82112312 | None:intergenic |
| CTCAAAGAAAATAAGGTACG+AGG | 0.632554 | 1.2:-82111174 | MS.gene065133:CDS |
| AACGGTAGATGGAGGCAGAG+AGG | 0.643178 | 1.2:-82111240 | MS.gene065133:CDS |
| ACAGAGAAAAGCGAAGAACA+AGG | 0.643427 | 1.2:-82111202 | MS.gene065133:CDS |
| AGGCAAGAACACCAAGACAG+GGG | 0.648532 | 1.2:-82112491 | MS.gene065133:CDS |
| AAGGCAAGAACACCAAGACA+GGG | 0.653824 | 1.2:-82112492 | MS.gene065133:CDS |
| ATATGGATGTCATCCAGTAA+CGG | 0.662808 | 1.2:-82111258 | MS.gene065133:CDS |
| AACTGAAGGAGGACTAGGAG+CGG | 0.667542 | 1.2:-82112268 | MS.gene065133:intron |
| CATCCAGTAACGGTAGATGG+AGG | 0.676181 | 1.2:-82111248 | MS.gene065133:CDS |
| CCTCCAGCAGCGAACCAGCG+AGG | 0.699815 | 1.2:-82112449 | MS.gene065133:CDS |
| GCATAACAAAGAGAGCACGT+TGG | 0.777160 | 1.2:-82112683 | MS.gene065133:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATGATTATAATAAG+GGG | - | chr1.2:82111992-82112011 | MS.gene065133:intron | 10.0% |
| !! | GAAAATAATGATTATAATAA+GGG | - | chr1.2:82111991-82112010 | MS.gene065133:intron | 10.0% |
| !! | TGAAAATAATGATTATAATA+AGG | - | chr1.2:82111990-82112009 | MS.gene065133:intron | 10.0% |
| !! | AATATCTAAATGTGTATATT+TGG | + | chr1.2:82112279-82112298 | None:intergenic | 15.0% |
| !!! | CTTTCTATCAAATTTTATAA+AGG | - | chr1.2:82112449-82112468 | MS.gene065133:CDS | 15.0% |
| !!! | TATATCTTAATTTTTCTTCA+TGG | - | chr1.2:82112149-82112168 | MS.gene065133:intron | 15.0% |
| !! | ATTTGATAGAAAGAAAAAAG+TGG | + | chr1.2:82112442-82112461 | None:intergenic | 20.0% |
| !! | TAGTGATAATAATTATGAGA+TGG | - | chr1.2:82111651-82111670 | MS.gene065133:intron | 20.0% |
| !! | TTTACTGTTAGATTAATCAT+TGG | - | chr1.2:82112416-82112435 | MS.gene065133:CDS | 20.0% |
| ! | ATAAATTATACCATGCAATC+AGG | + | chr1.2:82112132-82112151 | None:intergenic | 25.0% |
| ! | ATATTATTATTATTCCTCGC+TGG | + | chr1.2:82111397-82111416 | None:intergenic | 25.0% |
| ! | GATACCAATCATTAACTAAA+GGG | + | chr1.2:82112200-82112219 | None:intergenic | 25.0% |
| ! | GATTAGAAAATGAGTGTATA+GGG | - | chr1.2:82111752-82111771 | MS.gene065133:intron | 25.0% |
| ! | GGAAAAGAAAAATATCTTTG+CGG | - | chr1.2:82112013-82112032 | MS.gene065133:intron | 25.0% |
| ! | TGATACCAATCATTAACTAA+AGG | + | chr1.2:82112201-82112220 | None:intergenic | 25.0% |
| !! | ATTATTTATCAGGGAACTTT+TGG | - | chr1.2:82112512-82112531 | MS.gene065133:CDS | 25.0% |
| !!! | TATTTTAGCAAAGGAAATGT+TGG | + | chr1.2:82112752-82112771 | None:intergenic | 25.0% |
| ATTGATTGATACAAAGCATG+AGG | - | chr1.2:82111789-82111808 | MS.gene065133:intron | 30.0% | |
| CAATCCCTTTAGTTAATGAT+TGG | - | chr1.2:82112193-82112212 | MS.gene065133:intron | 30.0% | |
| CTCTCATTGTATTTAACATC+AGG | + | chr1.2:82111610-82111629 | None:intergenic | 30.0% | |
| GAAGAATTCATCACCATTAA+TGG | + | chr1.2:82111287-82111306 | None:intergenic | 30.0% | |
| GGATTAGAAAATGAGTGTAT+AGG | - | chr1.2:82111751-82111770 | MS.gene065133:intron | 30.0% | |
| GGTTGTTCTCAAAGAAAATA+AGG | - | chr1.2:82112648-82112667 | MS.gene065133:CDS | 30.0% | |
| ACAAATCTCCCTTTCATTCT+TGG | + | chr1.2:82112707-82112726 | None:intergenic | 35.0% | |
| ACAGTAAAAAAGTGAACAGC+AGG | + | chr1.2:82112404-82112423 | None:intergenic | 35.0% | |
| ACTTCATCGAAACCTAAATC+CGG | + | chr1.2:82111436-82111455 | None:intergenic | 35.0% | |
| AGAAAATAAGGTACGAGGTT+AGG | - | chr1.2:82112660-82112679 | MS.gene065133:CDS | 35.0% | |
| AGAAAATGAGTGTATAGGGA+TGG | - | chr1.2:82111756-82111775 | MS.gene065133:intron | 35.0% | |
| AGAAGAGACCAAGAATGAAA+GGG | - | chr1.2:82112696-82112715 | MS.gene065133:CDS | 35.0% | |
| AGAGAGCTATGAAATTGTTG+AGG | - | chr1.2:82111858-82111877 | MS.gene065133:intron | 35.0% | |
| ATATGGATGTCATCCAGTAA+CGG | - | chr1.2:82112571-82112590 | MS.gene065133:CDS | 35.0% | |
| ATGATGCAGTAATCATTGCA+TGG | - | chr1.2:82112043-82112062 | MS.gene065133:intron | 35.0% | |
| CATGAGTGTGTCAAAAATCA+CGG | + | chr1.2:82112250-82112269 | None:intergenic | 35.0% | |
| CATTATGCTTATGGTGAGTT+TGG | - | chr1.2:82112545-82112564 | MS.gene065133:CDS | 35.0% | |
| CTCAAAGAAAATAAGGTACG+AGG | - | chr1.2:82112655-82112674 | MS.gene065133:CDS | 35.0% | |
| GAGAGCTATGAAATTGTTGA+GGG | - | chr1.2:82111859-82111878 | MS.gene065133:intron | 35.0% | |
| GGTGATGAATTCTTCAATTG+TGG | - | chr1.2:82111292-82111311 | MS.gene065133:CDS | 35.0% | |
| GTACATAATTCAGCAACAGA+AGG | + | chr1.2:82111520-82111539 | None:intergenic | 35.0% | |
| TAATGGTGACAAGCCAAATT+TGG | - | chr1.2:82112089-82112108 | MS.gene065133:intron | 35.0% | |
| TCGGCTAATTCAATATCAGA+TGG | + | chr1.2:82111697-82111716 | None:intergenic | 35.0% | |
| TGATGCAGTAATCATTGCAT+GGG | - | chr1.2:82112044-82112063 | MS.gene065133:intron | 35.0% | |
| TGTTGAGGGAGATAATATGA+TGG | - | chr1.2:82111873-82111892 | MS.gene065133:intron | 35.0% | |
| TTCTCATCAGCATCCAAATT+TGG | + | chr1.2:82112105-82112124 | None:intergenic | 35.0% | |
| TTCTCATGAAACACTTGAAG+AGG | - | chr1.2:82111942-82111961 | MS.gene065133:intron | 35.0% | |
| ! | GGAGATAATATGATGGAGAT+TGG | - | chr1.2:82111880-82111899 | MS.gene065133:intron | 35.0% |
| ! | TTCAATTGTGGTCCTTTTTC+TGG | - | chr1.2:82111304-82111323 | MS.gene065133:CDS | 35.0% |
| !! | TTATCAGGGAACTTTTGGAA+CGG | - | chr1.2:82112517-82112536 | MS.gene065133:CDS | 35.0% |
| AAAAACGTAGCAAACGCTGT+TGG | - | chr1.2:82111094-82111113 | MS.gene065133:CDS | 40.0% | |
| AAATCCGGCACAAGATGAAA+CGG | + | chr1.2:82111421-82111440 | None:intergenic | 40.0% | |
| ACAGAGAAAAGCGAAGAACA+AGG | - | chr1.2:82112627-82112646 | MS.gene065133:CDS | 40.0% | |
| ACGGAGGTTCATTATGCTTA+TGG | - | chr1.2:82112536-82112555 | MS.gene065133:CDS | 40.0% | |
| AGCTGATGTTGAGAGCTTAT+TGG | - | chr1.2:82111723-82111742 | MS.gene065133:intron | 40.0% | |
| AGGAAATGTTGGAACTGCAA+AGG | + | chr1.2:82112741-82112760 | None:intergenic | 40.0% | |
| ATGAAGCGCAACTTCTTTAC+AGG | - | chr1.2:82111479-82111498 | MS.gene065133:intron | 40.0% | |
| ATGTTGAGAGCTTATTGGGT+AGG | - | chr1.2:82111728-82111747 | MS.gene065133:intron | 40.0% | |
| ATTTGGATGCTGATGAGAAC+TGG | - | chr1.2:82112106-82112125 | MS.gene065133:intron | 40.0% | |
| CTCAACATCAGCTGCAAATT+CGG | + | chr1.2:82111716-82111735 | None:intergenic | 40.0% | |
| CTTTACAACACTTGCACACA+CGG | - | chr1.2:82112355-82112374 | MS.gene065133:CDS | 40.0% | |
| GAAAGGGAGATTTGTGAAGA+GGG | - | chr1.2:82112712-82112731 | MS.gene065133:CDS | 40.0% | |
| GAGAAGAGACCAAGAATGAA+AGG | - | chr1.2:82112695-82112714 | MS.gene065133:CDS | 40.0% | |
| GCAACAGAAGGATCGAAAAT+TGG | + | chr1.2:82111508-82111527 | None:intergenic | 40.0% | |
| GCTGATGTTGAGAGCTTATT+GGG | - | chr1.2:82111724-82111743 | MS.gene065133:intron | 40.0% | |
| TATGCTTATGGTGAGTTTGG+TGG | - | chr1.2:82112548-82112567 | MS.gene065133:CDS | 40.0% | |
| TGAAACACTTGAAGAGGTGA+AGG | - | chr1.2:82111948-82111967 | MS.gene065133:intron | 40.0% | |
| TGAAAGGGAGATTTGTGAAG+AGG | - | chr1.2:82112711-82112730 | MS.gene065133:CDS | 40.0% | |
| TGAAGCGCAACTTCTTTACA+GGG | - | chr1.2:82111480-82111499 | MS.gene065133:intron | 40.0% | |
| TGTATAGGGATGGAAGAGTT+GGG | - | chr1.2:82111766-82111785 | MS.gene065133:intron | 40.0% | |
| TGTTGAGAGCTTATTGGGTA+GGG | - | chr1.2:82111729-82111748 | MS.gene065133:intron | 40.0% | |
| TTCTTGGTGAAGCCAGAAAA+AGG | + | chr1.2:82111319-82111338 | None:intergenic | 40.0% | |
| TTTCATCTTGTGCCGGATTT+AGG | - | chr1.2:82111421-82111440 | MS.gene065133:intron | 40.0% | |
| ! | CGTGATTTTTGACACACTCA+TGG | - | chr1.2:82112248-82112267 | MS.gene065133:intron | 40.0% |
| ! | TATGGTGAGTTTGGTGGATA+TGG | - | chr1.2:82112554-82112573 | MS.gene065133:CDS | 40.0% |
| !!! | TTTTTCTGGCTTCACCAAGA+AGG | - | chr1.2:82111318-82111337 | MS.gene065133:intron | 40.0% |
| AAGGCAAGAACACCAAGACA+GGG | - | chr1.2:82111337-82111356 | MS.gene065133:intron | 45.0% | |
| AATCCGGCACAAGATGAAAC+GGG | + | chr1.2:82111420-82111439 | None:intergenic | 45.0% | |
| AGTGGAAAGGTGAAGGAAGA+AGG | - | chr1.2:82111832-82111851 | MS.gene065133:intron | 45.0% | |
| CCTTCAGTTGAACCAACTGA+AGG | + | chr1.2:82111550-82111569 | None:intergenic | 45.0% | |
| GATTTGTGTTTCCCCTGTCT+TGG | + | chr1.2:82111352-82111371 | None:intergenic | 45.0% | |
| GCAGGTCTAACACAAGTGAA+TGG | + | chr1.2:82112386-82112405 | None:intergenic | 45.0% | |
| GCGTCGTACAAGTCCATTAA+TGG | - | chr1.2:82111271-82111290 | MS.gene065133:CDS | 45.0% | |
| GTGTATAGGGATGGAAGAGT+TGG | - | chr1.2:82111765-82111784 | MS.gene065133:intron | 45.0% | |
| GTTGAGAGCTTATTGGGTAG+GGG | - | chr1.2:82111730-82111749 | MS.gene065133:intron | 45.0% | |
| TATCCCGTTTCATCTTGTGC+CGG | - | chr1.2:82111414-82111433 | MS.gene065133:intron | 45.0% | |
| TCAGTTGAACCAACTGAAGG+AGG | + | chr1.2:82111547-82111566 | None:intergenic | 45.0% | |
| TGTACTAGTCCTCCTTCAGT+TGG | - | chr1.2:82111535-82111554 | MS.gene065133:intron | 45.0% | |
| TGTCATCCAGTAACGGTAGA+TGG | - | chr1.2:82112578-82112597 | MS.gene065133:CDS | 45.0% | |
| TGTTGGAGGCAAAACTGCTA+GGG | - | chr1.2:82111111-82111130 | MS.gene065133:CDS | 45.0% | |
| ! | AGTGAGAAGTGGAAGTGTAG+TGG | - | chr1.2:82111814-82111833 | MS.gene065133:intron | 45.0% |
| ! | CATTAGTCCAGGGACACTTT+TGG | + | chr1.2:82112074-82112093 | None:intergenic | 45.0% |
| ! | CCTTCAGTTGGTTCAACTGA+AGG | - | chr1.2:82111547-82111566 | MS.gene065133:intron | 45.0% |
| ! | GAAGTGGAAGTGTAGTGGAA+AGG | - | chr1.2:82111819-82111838 | MS.gene065133:intron | 45.0% |
| ! | GAAGTGTAGTGGAAAGGTGA+AGG | - | chr1.2:82111825-82111844 | MS.gene065133:intron | 45.0% |
| ! | GCATAACAAAGAGAGCACGT+TGG | - | chr1.2:82111146-82111165 | MS.gene065133:CDS | 45.0% |
| ! | TCAGTTGGTTCAACTGAAGG+AGG | - | chr1.2:82111550-82111569 | MS.gene065133:intron | 45.0% |
| !! | CAAAAGTGTCCCTGGACTAA+TGG | - | chr1.2:82112072-82112091 | MS.gene065133:intron | 45.0% |
| !! | TCTTGGTGTTCTTGCCTTCT+TGG | + | chr1.2:82111335-82111354 | None:intergenic | 45.0% |
| !!! | TTTAATTTAATTATTTATCA+GGG | - | chr1.2:82112503-82112522 | MS.gene065133:CDS | 5.0% |
| !!! | TTTTAATTTAATTATTTATC+AGG | - | chr1.2:82112502-82112521 | MS.gene065133:CDS | 5.0% |
| AACGTAGCAAACGCTGTTGG+AGG | - | chr1.2:82111097-82111116 | MS.gene065133:CDS | 50.0% | |
| AACTGAAGGAGGACTAGGAG+CGG | - | chr1.2:82111561-82111580 | MS.gene065133:intron | 50.0% | |
| AGCATGAGGAGAGTGAGAAG+TGG | - | chr1.2:82111803-82111822 | MS.gene065133:intron | 50.0% | |
| AGGCAAGAACACCAAGACAG+GGG | - | chr1.2:82111338-82111357 | MS.gene065133:intron | 50.0% | |
| CATCCAGTAACGGTAGATGG+AGG | - | chr1.2:82112581-82112600 | MS.gene065133:CDS | 50.0% | |
| CTGTTGGAGGCAAAACTGCT+AGG | - | chr1.2:82111110-82111129 | MS.gene065133:CDS | 50.0% | |
| GAAGAGGTGAAGGAGAAGTG+TGG | - | chr1.2:82111958-82111977 | MS.gene065133:intron | 50.0% | |
| GAAGGCAAGAACACCAAGAC+AGG | - | chr1.2:82111336-82111355 | MS.gene065133:intron | 50.0% | |
| GGCTTGTCACCATTAGTCCA+GGG | + | chr1.2:82112084-82112103 | None:intergenic | 50.0% | |
| GGTTCAACTGAAGGAGGACT+AGG | - | chr1.2:82111556-82111575 | MS.gene065133:intron | 50.0% | |
| ! | TGAGAACTGGCCTGATTGCA+TGG | - | chr1.2:82112119-82112138 | MS.gene065133:intron | 50.0% |
| ! | TGGCTTGTCACCATTAGTCC+AGG | + | chr1.2:82112085-82112104 | None:intergenic | 50.0% |
| !!! | TCAGGGAACTTTTGGAACGG+AGG | - | chr1.2:82112520-82112539 | MS.gene065133:CDS | 50.0% |
| AACGGTAGATGGAGGCAGAG+AGG | - | chr1.2:82112589-82112608 | MS.gene065133:CDS | 55.0% | |
| AGATGGAGGCAGAGAGGCAA+GGG | - | chr1.2:82112595-82112614 | MS.gene065133:CDS | 55.0% | |
| CTGCCTCCATCTACCGTTAC+TGG | + | chr1.2:82112587-82112606 | None:intergenic | 55.0% | |
| GCAGAGAGGCAAGGGTTTCA+AGG | - | chr1.2:82112603-82112622 | MS.gene065133:CDS | 55.0% | |
| TAGATGGAGGCAGAGAGGCA+AGG | - | chr1.2:82112594-82112613 | MS.gene065133:CDS | 55.0% | |
| !! | GGGATAGCCAAAAGTGTCCC+TGG | - | chr1.2:82112064-82112083 | MS.gene065133:intron | 55.0% |
| !! | ATTCCTCGCTGGTTCGCTGC+TGG | + | chr1.2:82111386-82111405 | None:intergenic | 60.0% |
| CCTCCAGCAGCGAACCAGCG+AGG | - | chr1.2:82111380-82111399 | MS.gene065133:intron | 70.0% | |
| !! | CCTCGCTGGTTCGCTGCTGG+AGG | + | chr1.2:82111383-82111402 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 82111079 | 82112772 | 82111079 | ID=MS.gene065133 |
| chr1.2 | mRNA | 82111079 | 82112772 | 82111079 | ID=MS.gene065133.t1;Parent=MS.gene065133 |
| chr1.2 | exon | 82112269 | 82112772 | 82112269 | ID=MS.gene065133.t1.exon1;Parent=MS.gene065133.t1 |
| chr1.2 | CDS | 82112269 | 82112772 | 82112269 | ID=cds.MS.gene065133.t1;Parent=MS.gene065133.t1 |
| chr1.2 | exon | 82111079 | 82111327 | 82111079 | ID=MS.gene065133.t1.exon2;Parent=MS.gene065133.t1 |
| chr1.2 | CDS | 82111079 | 82111327 | 82111079 | ID=cds.MS.gene065133.t1;Parent=MS.gene065133.t1 |
| Gene Sequence |
| Protein sequence |
