Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060101.t1 | XP_024641127.1 | 96.2 | 339 | 12 | 1 | 1 | 338 | 1 | 339 | 2.30E-194 | 688 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060101.t1 | Q945S8 | 61.7 | 363 | 112 | 7 | 1 | 336 | 1 | 363 | 3.4e-122 | 439.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060101.t1 | G7KMG0 | 96.2 | 339 | 12 | 1 | 1 | 338 | 1 | 339 | 1.6e-194 | 688.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene060101.t1 | TR | SET |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060101 | MS.gene065825 | 0.804092 | 2.55E-49 | -1.69E-46 |
MS.gene060101 | MS.gene07147 | 0.814696 | 1.35E-51 | -1.69E-46 |
MS.gene060101 | MS.gene071985 | 0.803789 | 2.95E-49 | -1.69E-46 |
MS.gene060101 | MS.gene07719 | 0.800162 | 1.64E-48 | -1.69E-46 |
MS.gene060101 | MS.gene07733 | 0.801444 | 8.98E-49 | -1.69E-46 |
MS.gene060101 | MS.gene21551 | 0.802313 | 5.95E-49 | -1.69E-46 |
MS.gene060101 | MS.gene22964 | 0.808141 | 3.58E-50 | -1.69E-46 |
MS.gene060101 | MS.gene28606 | 0.815013 | 1.15E-51 | -1.69E-46 |
MS.gene060101 | MS.gene35135 | 0.800471 | 1.42E-48 | -1.69E-46 |
MS.gene060101 | MS.gene35438 | 0.812445 | 4.22E-51 | -1.69E-46 |
MS.gene060101 | MS.gene54544 | 0.81854 | 1.86E-52 | -1.69E-46 |
MS.gene060101 | MS.gene62558 | 0.804895 | 1.73E-49 | -1.69E-46 |
MS.gene060101 | MS.gene63327 | 0.816085 | 6.63E-52 | -1.69E-46 |
MS.gene060101 | MS.gene64670 | 0.807553 | 4.78E-50 | -1.69E-46 |
MS.gene060101 | MS.gene67738 | 0.806236 | 9.08E-50 | -1.69E-46 |
MS.gene060101 | MS.gene84300 | 0.808884 | 2.49E-50 | -1.69E-46 |
MS.gene060101 | MS.gene89096 | 0.800612 | 1.33E-48 | -1.69E-46 |
MS.gene060101 | MS.gene89419 | 0.815261 | 1.01E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene21793 | MS.gene060101 | PPI |
MS.gene058069 | MS.gene060101 | PPI |
MS.gene024821 | MS.gene060101 | PPI |
MS.gene40494 | MS.gene060101 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060101.t1 | MTR_6g059310 | 96.165 | 339 | 12 | 1 | 1 | 338 | 1 | 339 | 0.0 | 679 |
MS.gene060101.t1 | MTR_6g059310 | 93.410 | 349 | 12 | 2 | 1 | 338 | 1 | 349 | 0.0 | 671 |
MS.gene060101.t1 | MTR_0071s0100 | 49.356 | 233 | 111 | 3 | 28 | 259 | 132 | 358 | 1.72e-73 | 232 |
MS.gene060101.t1 | MTR_1g098000 | 44.000 | 200 | 108 | 3 | 57 | 252 | 38 | 237 | 2.81e-43 | 155 |
MS.gene060101.t1 | MTR_1g098370 | 43.500 | 200 | 109 | 3 | 57 | 252 | 41 | 240 | 1.17e-42 | 154 |
MS.gene060101.t1 | MTR_3g088625 | 39.301 | 229 | 132 | 6 | 28 | 251 | 1134 | 1360 | 3.29e-41 | 154 |
MS.gene060101.t1 | MTR_3g088625 | 39.301 | 229 | 132 | 6 | 28 | 251 | 1240 | 1466 | 4.04e-41 | 154 |
MS.gene060101.t1 | MTR_8g078490 | 35.714 | 182 | 101 | 3 | 84 | 249 | 1071 | 1252 | 8.10e-26 | 108 |
MS.gene060101.t1 | MTR_4g132610 | 34.615 | 182 | 103 | 3 | 84 | 249 | 865 | 1046 | 1.54e-25 | 108 |
MS.gene060101.t1 | MTR_8g078505 | 34.857 | 175 | 101 | 2 | 84 | 245 | 359 | 533 | 1.77e-25 | 107 |
MS.gene060101.t1 | MTR_5g018850 | 35.165 | 182 | 102 | 3 | 84 | 249 | 1325 | 1506 | 3.38e-25 | 107 |
MS.gene060101.t1 | MTR_7g021365 | 38.129 | 139 | 81 | 2 | 111 | 246 | 905 | 1041 | 2.28e-20 | 92.8 |
MS.gene060101.t1 | MTR_1g012910 | 34.000 | 150 | 93 | 2 | 106 | 249 | 358 | 507 | 1.21e-19 | 90.1 |
MS.gene060101.t1 | MTR_1g012910 | 34.000 | 150 | 93 | 2 | 106 | 249 | 521 | 670 | 1.33e-19 | 90.1 |
MS.gene060101.t1 | MTR_7g117355 | 38.776 | 147 | 75 | 4 | 115 | 247 | 816 | 961 | 6.71e-19 | 88.2 |
MS.gene060101.t1 | MTR_2g036060 | 34.848 | 132 | 86 | 0 | 111 | 242 | 1032 | 1163 | 1.12e-18 | 87.8 |
MS.gene060101.t1 | MTR_2g036060 | 34.848 | 132 | 86 | 0 | 111 | 242 | 1057 | 1188 | 1.27e-18 | 87.4 |
MS.gene060101.t1 | MTR_5g013420 | 30.303 | 198 | 104 | 6 | 86 | 249 | 891 | 1088 | 1.60e-18 | 87.4 |
MS.gene060101.t1 | MTR_1g012890 | 32.414 | 145 | 92 | 2 | 111 | 249 | 223 | 367 | 2.46e-18 | 85.1 |
MS.gene060101.t1 | MTR_5g013420 | 30.412 | 194 | 101 | 6 | 86 | 245 | 891 | 1084 | 4.25e-18 | 85.9 |
MS.gene060101.t1 | MTR_4g010830 | 29.798 | 198 | 105 | 6 | 86 | 249 | 782 | 979 | 4.43e-18 | 85.9 |
MS.gene060101.t1 | MTR_3g091310 | 37.692 | 130 | 76 | 3 | 122 | 247 | 932 | 1060 | 1.09e-17 | 84.7 |
MS.gene060101.t1 | MTR_3g091310 | 37.692 | 130 | 76 | 3 | 122 | 247 | 838 | 966 | 1.38e-17 | 84.3 |
MS.gene060101.t1 | MTR_7g088370 | 29.348 | 184 | 106 | 5 | 86 | 246 | 519 | 701 | 2.10e-17 | 83.6 |
MS.gene060101.t1 | MTR_1g008230 | 36.923 | 130 | 77 | 3 | 122 | 247 | 625 | 753 | 6.83e-16 | 79.0 |
MS.gene060101.t1 | MTR_1g008230 | 36.923 | 130 | 77 | 3 | 122 | 247 | 903 | 1031 | 7.50e-16 | 79.3 |
MS.gene060101.t1 | MTR_8g027725 | 35.385 | 130 | 79 | 3 | 122 | 247 | 818 | 946 | 1.35e-15 | 78.2 |
MS.gene060101.t1 | MTR_8g027725 | 35.385 | 130 | 79 | 3 | 122 | 247 | 803 | 931 | 1.44e-15 | 78.2 |
MS.gene060101.t1 | MTR_3g011440 | 27.551 | 196 | 99 | 4 | 86 | 247 | 461 | 647 | 2.09e-15 | 77.4 |
MS.gene060101.t1 | MTR_5g016870 | 31.395 | 172 | 105 | 5 | 66 | 229 | 664 | 830 | 4.21e-15 | 76.6 |
MS.gene060101.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 100 | 236 | 471 | 602 | 1.35e-14 | 75.1 |
MS.gene060101.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 100 | 236 | 620 | 751 | 1.46e-14 | 75.1 |
MS.gene060101.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 100 | 236 | 671 | 802 | 1.61e-14 | 75.1 |
MS.gene060101.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 100 | 236 | 599 | 730 | 1.63e-14 | 75.1 |
MS.gene060101.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 100 | 236 | 661 | 792 | 1.64e-14 | 75.1 |
MS.gene060101.t1 | MTR_1g086980 | 32.847 | 137 | 87 | 3 | 100 | 236 | 651 | 782 | 1.75e-14 | 74.7 |
MS.gene060101.t1 | MTR_8g042750 | 27.094 | 203 | 110 | 5 | 86 | 250 | 486 | 688 | 3.39e-14 | 73.9 |
MS.gene060101.t1 | MTR_7g055660 | 33.058 | 121 | 79 | 2 | 111 | 231 | 582 | 700 | 2.09e-13 | 71.6 |
MS.gene060101.t1 | MTR_4g010550 | 29.032 | 186 | 106 | 7 | 86 | 249 | 282 | 463 | 2.34e-13 | 70.9 |
MS.gene060101.t1 | MTR_6g027690 | 26.667 | 210 | 119 | 8 | 66 | 255 | 228 | 422 | 3.57e-12 | 67.4 |
MS.gene060101.t1 | MTR_7g450730 | 26.728 | 217 | 118 | 11 | 64 | 249 | 298 | 504 | 8.17e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene060101.t1 | AT2G44150 | 63.636 | 363 | 105 | 7 | 1 | 336 | 1 | 363 | 2.33e-144 | 412 |
MS.gene060101.t1 | AT3G59960 | 57.100 | 331 | 119 | 7 | 1 | 310 | 1 | 329 | 6.52e-107 | 316 |
MS.gene060101.t1 | AT3G59960 | 66.795 | 259 | 82 | 3 | 1 | 257 | 1 | 257 | 7.60e-105 | 309 |
MS.gene060101.t1 | AT3G59960 | 66.795 | 259 | 82 | 3 | 1 | 257 | 1 | 257 | 7.60e-105 | 309 |
MS.gene060101.t1 | AT3G59960 | 66.795 | 259 | 82 | 3 | 1 | 257 | 1 | 257 | 7.60e-105 | 309 |
MS.gene060101.t1 | AT4G30860 | 47.012 | 251 | 123 | 4 | 10 | 256 | 227 | 471 | 6.19e-73 | 234 |
MS.gene060101.t1 | AT1G76710 | 39.834 | 241 | 139 | 5 | 33 | 268 | 7 | 246 | 3.95e-45 | 161 |
MS.gene060101.t1 | AT1G76710 | 39.834 | 241 | 139 | 5 | 33 | 268 | 7 | 246 | 3.95e-45 | 161 |
MS.gene060101.t1 | AT1G76710 | 39.834 | 241 | 139 | 5 | 33 | 268 | 7 | 246 | 4.39e-45 | 161 |
MS.gene060101.t1 | AT1G76710 | 39.834 | 241 | 139 | 5 | 33 | 268 | 7 | 246 | 4.94e-45 | 161 |
MS.gene060101.t1 | AT1G77300 | 40.741 | 216 | 123 | 5 | 43 | 253 | 955 | 1170 | 4.43e-42 | 156 |
MS.gene060101.t1 | AT1G77300 | 40.741 | 216 | 123 | 5 | 43 | 253 | 955 | 1170 | 4.44e-42 | 156 |
MS.gene060101.t1 | AT2G23740 | 34.973 | 183 | 98 | 4 | 84 | 246 | 1190 | 1371 | 4.82e-23 | 100 |
MS.gene060101.t1 | AT2G23740 | 34.973 | 183 | 98 | 4 | 84 | 246 | 1197 | 1378 | 4.87e-23 | 100 |
MS.gene060101.t1 | AT2G23740 | 34.973 | 183 | 98 | 4 | 84 | 246 | 1197 | 1378 | 4.87e-23 | 100 |
MS.gene060101.t1 | AT2G23740 | 34.973 | 183 | 98 | 4 | 84 | 246 | 1197 | 1378 | 4.87e-23 | 100 |
MS.gene060101.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 7.08e-21 | 94.4 |
MS.gene060101.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 7.08e-21 | 94.4 |
MS.gene060101.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 7.08e-21 | 94.4 |
MS.gene060101.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 7.08e-21 | 94.4 |
MS.gene060101.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 7.08e-21 | 94.4 |
MS.gene060101.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 7.08e-21 | 94.4 |
MS.gene060101.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 7.08e-21 | 94.4 |
MS.gene060101.t1 | AT5G42400 | 39.683 | 126 | 76 | 0 | 124 | 249 | 1262 | 1387 | 7.08e-21 | 94.4 |
MS.gene060101.t1 | AT2G35160 | 33.523 | 176 | 101 | 4 | 86 | 249 | 586 | 757 | 4.66e-20 | 91.7 |
MS.gene060101.t1 | AT2G35160 | 33.523 | 176 | 101 | 4 | 86 | 249 | 622 | 793 | 5.57e-20 | 91.7 |
MS.gene060101.t1 | AT2G35160 | 33.523 | 176 | 101 | 4 | 86 | 249 | 622 | 793 | 5.57e-20 | 91.7 |
MS.gene060101.t1 | AT2G35160 | 33.523 | 176 | 101 | 4 | 86 | 249 | 622 | 793 | 5.57e-20 | 91.7 |
MS.gene060101.t1 | AT2G35160 | 33.523 | 176 | 101 | 4 | 86 | 249 | 622 | 793 | 5.57e-20 | 91.7 |
MS.gene060101.t1 | AT1G05830 | 36.691 | 139 | 83 | 2 | 111 | 246 | 919 | 1055 | 1.75e-18 | 87.0 |
MS.gene060101.t1 | AT1G05830 | 36.691 | 139 | 83 | 2 | 111 | 246 | 919 | 1055 | 1.75e-18 | 87.0 |
MS.gene060101.t1 | AT1G05830 | 36.691 | 139 | 83 | 2 | 111 | 246 | 919 | 1055 | 1.75e-18 | 87.0 |
MS.gene060101.t1 | AT1G05830 | 36.691 | 139 | 83 | 2 | 111 | 246 | 919 | 1055 | 1.75e-18 | 87.0 |
MS.gene060101.t1 | AT2G31650 | 37.410 | 139 | 82 | 2 | 111 | 246 | 898 | 1034 | 2.23e-18 | 87.0 |
MS.gene060101.t1 | AT2G22740 | 31.818 | 198 | 94 | 7 | 90 | 249 | 595 | 789 | 1.21e-17 | 84.3 |
MS.gene060101.t1 | AT2G22740 | 31.818 | 198 | 94 | 7 | 90 | 249 | 595 | 789 | 1.21e-17 | 84.3 |
MS.gene060101.t1 | AT4G27910 | 38.462 | 130 | 75 | 3 | 122 | 247 | 896 | 1024 | 1.86e-17 | 84.0 |
MS.gene060101.t1 | AT1G02580 | 32.796 | 186 | 104 | 5 | 66 | 235 | 486 | 666 | 3.48e-16 | 80.1 |
MS.gene060101.t1 | AT3G61740 | 38.168 | 131 | 75 | 4 | 122 | 247 | 886 | 1015 | 7.33e-16 | 79.3 |
MS.gene060101.t1 | AT3G61740 | 38.168 | 131 | 75 | 4 | 122 | 247 | 850 | 979 | 9.29e-16 | 79.0 |
MS.gene060101.t1 | AT5G53430 | 36.923 | 130 | 77 | 3 | 122 | 247 | 912 | 1040 | 1.21e-15 | 78.6 |
MS.gene060101.t1 | AT5G13960 | 26.568 | 271 | 144 | 8 | 34 | 249 | 219 | 489 | 5.33e-15 | 76.3 |
MS.gene060101.t1 | AT5G13960 | 27.306 | 271 | 142 | 8 | 34 | 249 | 353 | 623 | 8.82e-15 | 75.9 |
MS.gene060101.t1 | AT4G02020 | 31.373 | 153 | 96 | 4 | 100 | 252 | 696 | 839 | 9.89e-15 | 75.9 |
MS.gene060101.t1 | AT1G17770 | 28.283 | 198 | 103 | 6 | 86 | 246 | 494 | 689 | 1.69e-14 | 75.1 |
MS.gene060101.t1 | AT3G03750 | 29.189 | 185 | 106 | 6 | 90 | 253 | 170 | 350 | 2.18e-14 | 73.6 |
MS.gene060101.t1 | AT5G04940 | 27.434 | 226 | 108 | 7 | 80 | 250 | 446 | 670 | 3.14e-14 | 73.9 |
MS.gene060101.t1 | AT5G04940 | 27.434 | 226 | 108 | 7 | 80 | 250 | 446 | 670 | 3.14e-14 | 73.9 |
MS.gene060101.t1 | AT2G23380 | 36.111 | 108 | 67 | 2 | 122 | 229 | 763 | 868 | 2.95e-12 | 68.2 |
MS.gene060101.t1 | AT2G23380 | 36.111 | 108 | 67 | 2 | 122 | 229 | 536 | 641 | 2.98e-12 | 68.2 |
MS.gene060101.t1 | AT2G24740 | 27.551 | 196 | 97 | 6 | 95 | 250 | 565 | 755 | 1.81e-11 | 65.9 |
MS.gene060101.t1 | AT2G23740 | 34.454 | 119 | 65 | 2 | 84 | 190 | 1197 | 1314 | 5.17e-11 | 64.3 |
MS.gene060101.t1 | AT2G23740 | 34.454 | 119 | 65 | 2 | 84 | 190 | 1197 | 1314 | 5.17e-11 | 64.3 |
Find 59 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGGATACTGCGCTTTATA+TGG | 0.211128 | 6.2:-69318431 | None:intergenic |
GCAGATTTGGGATTATTAAA+TGG | 0.252262 | 6.2:+69324945 | MS.gene060101:intron |
CATAGCAGGTTTGTTCAATT+TGG | 0.254145 | 6.2:+69320295 | MS.gene060101:intron |
ACCTGATATGCCACTAATTT+AGG | 0.266226 | 6.2:-69320385 | None:intergenic |
CATTTCTGCATCTCAGTATT+CGG | 0.269242 | 6.2:-69319664 | None:intergenic |
TTCAATGCCCATCATGAAAA+AGG | 0.289802 | 6.2:+69318010 | None:intergenic |
GCCTAAATTAGTGGCATATC+AGG | 0.320135 | 6.2:+69320384 | MS.gene060101:CDS |
CTTCTGTCTAGCTGTTCTTC+AGG | 0.341155 | 6.2:+69318976 | MS.gene060101:CDS |
CAGTATTCGGGCAGCAACTA+TGG | 0.356191 | 6.2:-69319651 | None:intergenic |
GTGATAGATGCGACAAATAA+AGG | 0.361111 | 6.2:+69319607 | MS.gene060101:CDS |
AAACAAGCTTACCAGTTTGC+AGG | 0.362468 | 6.2:-69324597 | None:intergenic |
TCCATCTTTAGGATAATAGA+TGG | 0.401604 | 6.2:+69319817 | MS.gene060101:intron |
TGTTCAGTGTAGGCGTAAGC+TGG | 0.410254 | 6.2:+69320345 | MS.gene060101:CDS |
ATGTGAAATCAATCGAGATA+TGG | 0.429587 | 6.2:+69319585 | MS.gene060101:CDS |
AAACATGCGAACAGAGGCTT+TGG | 0.435383 | 6.2:+69319527 | MS.gene060101:CDS |
ATGACATGTCAAAAGAAGAA+TGG | 0.445126 | 6.2:+69325317 | MS.gene060101:CDS |
CGAATACTGAGATGCAGAAA+TGG | 0.448001 | 6.2:+69319665 | MS.gene060101:CDS |
ACCTACCAAGCCTAAATTAG+TGG | 0.455934 | 6.2:+69320375 | MS.gene060101:CDS |
GGCAAGAGAAAGAGTGATGA+TGG | 0.457143 | 6.2:+69318694 | MS.gene060101:CDS |
CAGAATGGAGACCTGCAAAC+TGG | 0.457320 | 6.2:+69324586 | MS.gene060101:CDS |
TAGACTGAGAAATGTGGATC+TGG | 0.471672 | 6.2:+69319334 | MS.gene060101:intron |
AGATATATATCTCACTAAGA+AGG | 0.474007 | 6.2:+69318672 | MS.gene060101:intron |
AAGGATACTGCGCTTTATAT+GGG | 0.477321 | 6.2:-69318430 | None:intergenic |
TGACATGTCAAAAGAAGAAT+GGG | 0.478376 | 6.2:+69325318 | MS.gene060101:CDS |
ATTTCTGCATCTCAGTATTC+GGG | 0.478549 | 6.2:-69319663 | None:intergenic |
TCTGGACAGGTTTATCAGAA+TGG | 0.486271 | 6.2:+69324571 | MS.gene060101:intron |
ACGAAGCTGATGAACAATCT+TGG | 0.488292 | 6.2:+69318351 | MS.gene060101:CDS |
TGTTCTTCAGGCTGCAAATG+TGG | 0.494922 | 6.2:+69318988 | MS.gene060101:CDS |
TGCAAGTCGTGATATAAAGA+AGG | 0.505376 | 6.2:+69319861 | MS.gene060101:CDS |
ATATGCCACTAATTTAGGCT+TGG | 0.510433 | 6.2:-69320380 | None:intergenic |
AATTGAGTAAGCAATTTGAA+TGG | 0.521092 | 6.2:-69324754 | None:intergenic |
TTTCAGATCATGTTTGAGGA+TGG | 0.537141 | 6.2:+69325280 | MS.gene060101:intron |
GTTCTTCAGGCTGCAAATGT+GGG | 0.537608 | 6.2:+69318989 | MS.gene060101:CDS |
GATATATATCTCACTAAGAA+GGG | 0.539250 | 6.2:+69318673 | MS.gene060101:intron |
GTAATTGAATATGTCGGAGA+AGG | 0.545438 | 6.2:+69319394 | MS.gene060101:CDS |
GCAGATGAAGATATAAAGCA+TGG | 0.559769 | 6.2:+69319364 | MS.gene060101:CDS |
ATAGATGGTGAAACTAGAAT+CGG | 0.561402 | 6.2:+69319832 | MS.gene060101:CDS |
GCCACTAATTTAGGCTTGGT+AGG | 0.568833 | 6.2:-69320376 | None:intergenic |
GTTATTATGATAAAACAACT+TGG | 0.570866 | 6.2:+69324788 | MS.gene060101:CDS |
TCTGATTCTACTGCTGTATG+TGG | 0.586087 | 6.2:+69318739 | MS.gene060101:CDS |
GAGTTTGTAATTGAATATGT+CGG | 0.587237 | 6.2:+69319388 | MS.gene060101:CDS |
GTTCAGTGTAGGCGTAAGCT+GGG | 0.595432 | 6.2:+69320346 | MS.gene060101:CDS |
CAGATGAAGATATAAAGCAT+GGG | 0.595965 | 6.2:+69319365 | MS.gene060101:CDS |
ACTGTGGTGCTGTTCAGTGT+AGG | 0.609909 | 6.2:+69320335 | MS.gene060101:CDS |
CTTTGGAATATGAAAGATCG+TGG | 0.610205 | 6.2:+69319544 | MS.gene060101:CDS |
GCAAGTCGTGATATAAAGAA+GGG | 0.610253 | 6.2:+69319862 | MS.gene060101:CDS |
TTTGGAATATGAAAGATCGT+GGG | 0.627929 | 6.2:+69319545 | MS.gene060101:CDS |
ATGATAAAACATGCGAACAG+AGG | 0.637191 | 6.2:+69319521 | MS.gene060101:CDS |
TAAAACAACTTGGAAATGTG+AGG | 0.644254 | 6.2:+69324798 | MS.gene060101:CDS |
GTGGTAGAGATTGCCACTGT+GGG | 0.651295 | 6.2:+69318758 | MS.gene060101:CDS |
TGAATATTCTCGAAAACACA+AGG | 0.669513 | 6.2:+69324973 | MS.gene060101:CDS |
GAAATGTGGATCTGGAATTG+TGG | 0.670067 | 6.2:+69319342 | MS.gene060101:CDS |
AGATGAAGATATAAAGCATG+GGG | 0.676792 | 6.2:+69319366 | MS.gene060101:CDS |
TGTGGTAGAGATTGCCACTG+TGG | 0.693149 | 6.2:+69318757 | MS.gene060101:CDS |
TTGGAATATGAAAGATCGTG+GGG | 0.693630 | 6.2:+69319546 | MS.gene060101:CDS |
GCAGATCAAGATTGCCACTG+TGG | 0.694777 | 6.2:+69320319 | MS.gene060101:CDS |
ACTTAGTTACTTACCCACAG+TGG | 0.732787 | 6.2:-69318771 | None:intergenic |
TACACTGAACAGCACCACAG+TGG | 0.733510 | 6.2:-69320333 | None:intergenic |
TGCTTGTAGACTGAGAAATG+TGG | 0.734376 | 6.2:+69319328 | MS.gene060101:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 69318014 | 69325357 | 69318014 | ID=MS.gene060101 |
chr6.2 | mRNA | 69318014 | 69325357 | 69318014 | ID=MS.gene060101.t1;Parent=MS.gene060101 |
chr6.2 | exon | 69318014 | 69318031 | 69318014 | ID=MS.gene060101.t1.exon1;Parent=MS.gene060101.t1 |
chr6.2 | CDS | 69318014 | 69318031 | 69318014 | ID=cds.MS.gene060101.t1;Parent=MS.gene060101.t1 |
chr6.2 | exon | 69318318 | 69318444 | 69318318 | ID=MS.gene060101.t1.exon2;Parent=MS.gene060101.t1 |
chr6.2 | CDS | 69318318 | 69318444 | 69318318 | ID=cds.MS.gene060101.t1;Parent=MS.gene060101.t1 |
chr6.2 | exon | 69318674 | 69318779 | 69318674 | ID=MS.gene060101.t1.exon3;Parent=MS.gene060101.t1 |
chr6.2 | CDS | 69318674 | 69318779 | 69318674 | ID=cds.MS.gene060101.t1;Parent=MS.gene060101.t1 |
chr6.2 | exon | 69318972 | 69319071 | 69318972 | ID=MS.gene060101.t1.exon4;Parent=MS.gene060101.t1 |
chr6.2 | CDS | 69318972 | 69319071 | 69318972 | ID=cds.MS.gene060101.t1;Parent=MS.gene060101.t1 |
chr6.2 | exon | 69319337 | 69319415 | 69319337 | ID=MS.gene060101.t1.exon5;Parent=MS.gene060101.t1 |
chr6.2 | CDS | 69319337 | 69319415 | 69319337 | ID=cds.MS.gene060101.t1;Parent=MS.gene060101.t1 |
chr6.2 | exon | 69319515 | 69319686 | 69319515 | ID=MS.gene060101.t1.exon6;Parent=MS.gene060101.t1 |
chr6.2 | CDS | 69319515 | 69319686 | 69319515 | ID=cds.MS.gene060101.t1;Parent=MS.gene060101.t1 |
chr6.2 | exon | 69319828 | 69319908 | 69319828 | ID=MS.gene060101.t1.exon7;Parent=MS.gene060101.t1 |
chr6.2 | CDS | 69319828 | 69319908 | 69319828 | ID=cds.MS.gene060101.t1;Parent=MS.gene060101.t1 |
chr6.2 | exon | 69320303 | 69320405 | 69320303 | ID=MS.gene060101.t1.exon8;Parent=MS.gene060101.t1 |
chr6.2 | CDS | 69320303 | 69320405 | 69320303 | ID=cds.MS.gene060101.t1;Parent=MS.gene060101.t1 |
chr6.2 | exon | 69324580 | 69324607 | 69324580 | ID=MS.gene060101.t1.exon9;Parent=MS.gene060101.t1 |
chr6.2 | CDS | 69324580 | 69324607 | 69324580 | ID=cds.MS.gene060101.t1;Parent=MS.gene060101.t1 |
chr6.2 | exon | 69324735 | 69324819 | 69324735 | ID=MS.gene060101.t1.exon10;Parent=MS.gene060101.t1 |
chr6.2 | CDS | 69324735 | 69324819 | 69324735 | ID=cds.MS.gene060101.t1;Parent=MS.gene060101.t1 |
chr6.2 | exon | 69324949 | 69324994 | 69324949 | ID=MS.gene060101.t1.exon11;Parent=MS.gene060101.t1 |
chr6.2 | CDS | 69324949 | 69324994 | 69324949 | ID=cds.MS.gene060101.t1;Parent=MS.gene060101.t1 |
chr6.2 | exon | 69325286 | 69325357 | 69325286 | ID=MS.gene060101.t1.exon12;Parent=MS.gene060101.t1 |
chr6.2 | CDS | 69325286 | 69325357 | 69325286 | ID=cds.MS.gene060101.t1;Parent=MS.gene060101.t1 |
Gene Sequence |
Protein sequence |