Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54544.t1 | XP_024630954.1 | 96.7 | 369 | 12 | 0 | 1 | 369 | 125 | 493 | 4.10E-205 | 723.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54544.t1 | Q8N9H8 | 22.2 | 306 | 146 | 8 | 24 | 323 | 512 | 731 | 6.8e-07 | 56.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54544.t1 | A0A396JEN7 | 96.7 | 369 | 12 | 0 | 1 | 369 | 125 | 493 | 2.9e-205 | 723.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene54544 | 0.827108 | 1.88E-54 | -1.69E-46 |
| MS.gene049159 | MS.gene54544 | 0.814915 | 1.21E-51 | -1.69E-46 |
| MS.gene049341 | MS.gene54544 | 0.801437 | 9.01E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene54544 | 0.833448 | 5.30E-56 | -1.69E-46 |
| MS.gene049435 | MS.gene54544 | 0.810277 | 1.25E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene54544 | 0.837732 | 4.37E-57 | -1.69E-46 |
| MS.gene049647 | MS.gene54544 | 0.814704 | 1.35E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene54544 | 0.817896 | 2.60E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene54544 | 0.811576 | 6.54E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene54544 | 0.816762 | 4.68E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene54544 | 0.803509 | 3.37E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene54544 | 0.806453 | 8.17E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene54544 | 0.818287 | 2.12E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene54544 | 0.845301 | 4.42E-59 | -1.69E-46 |
| MS.gene050721 | MS.gene54544 | 0.844275 | 8.36E-59 | -1.69E-46 |
| MS.gene050724 | MS.gene54544 | 0.82258 | 2.20E-53 | -1.69E-46 |
| MS.gene050780 | MS.gene54544 | 0.826126 | 3.22E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene54544 | 0.813527 | 2.45E-51 | -1.69E-46 |
| MS.gene050824 | MS.gene54544 | 0.801017 | 1.10E-48 | -1.69E-46 |
| MS.gene050844 | MS.gene54544 | 0.805486 | 1.30E-49 | -1.69E-46 |
| MS.gene051180 | MS.gene54544 | 0.805364 | 1.38E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene54544 | 0.801152 | 1.03E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene54544 | 0.830201 | 3.35E-55 | -1.69E-46 |
| MS.gene05157 | MS.gene54544 | 0.805827 | 1.11E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene54544 | 0.812277 | 4.60E-51 | -1.69E-46 |
| MS.gene051705 | MS.gene54544 | 0.800622 | 1.32E-48 | -1.69E-46 |
| MS.gene051719 | MS.gene54544 | 0.830626 | 2.64E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene54544 | 0.8139 | 2.03E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene54544 | 0.838717 | 2.44E-57 | -1.69E-46 |
| MS.gene052012 | MS.gene54544 | 0.826489 | 2.64E-54 | -1.69E-46 |
| MS.gene052020 | MS.gene54544 | 0.856829 | 2.47E-62 | -1.69E-46 |
| MS.gene052323 | MS.gene54544 | 0.849934 | 2.35E-60 | -1.69E-46 |
| MS.gene052384 | MS.gene54544 | 0.804907 | 1.72E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene54544 | 0.817693 | 2.89E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene54544 | 0.805649 | 1.21E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene54544 | 0.802465 | 5.54E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene54544 | 0.812159 | 4.88E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene54544 | 0.81146 | 6.93E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene54544 | 0.831836 | 1.33E-55 | -1.69E-46 |
| MS.gene052773 | MS.gene54544 | 0.835384 | 1.73E-56 | -1.69E-46 |
| MS.gene052863 | MS.gene54544 | 0.828625 | 8.10E-55 | -1.69E-46 |
| MS.gene052896 | MS.gene54544 | 0.843017 | 1.81E-58 | -1.69E-46 |
| MS.gene053079 | MS.gene54544 | 0.822693 | 2.07E-53 | -1.69E-46 |
| MS.gene053221 | MS.gene54544 | 0.833997 | 3.87E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene54544 | 0.841963 | 3.45E-58 | -1.69E-46 |
| MS.gene053599 | MS.gene54544 | 0.82441 | 8.20E-54 | -1.69E-46 |
| MS.gene053883 | MS.gene54544 | 0.817333 | 3.48E-52 | -1.69E-46 |
| MS.gene053966 | MS.gene54544 | 0.80412 | 2.52E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene54544 | 0.800089 | 1.70E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene54544 | 0.824208 | 9.14E-54 | -1.69E-46 |
| MS.gene054467 | MS.gene54544 | 0.818229 | 2.19E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene54544 | 0.814187 | 1.75E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene54544 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene54544 | 0.823822 | 1.13E-53 | -1.69E-46 |
| MS.gene054658 | MS.gene54544 | 0.801796 | 7.60E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene54544 | 0.813298 | 2.75E-51 | -1.69E-46 |
| MS.gene055227 | MS.gene54544 | 0.800724 | 1.26E-48 | -1.69E-46 |
| MS.gene055357 | MS.gene54544 | 0.80326 | 3.79E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene54544 | 0.822917 | 1.83E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene54544 | 0.833849 | 4.21E-56 | -1.69E-46 |
| MS.gene055468 | MS.gene54544 | 0.810411 | 1.17E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene54544 | 0.825687 | 4.09E-54 | -1.69E-46 |
| MS.gene055778 | MS.gene54544 | 0.835415 | 1.70E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene54544 | 0.821625 | 3.66E-53 | -1.69E-46 |
| MS.gene055891 | MS.gene54544 | 0.806919 | 6.51E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene54544 | 0.814979 | 1.17E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene54544 | 0.831428 | 1.68E-55 | -1.69E-46 |
| MS.gene056173 | MS.gene54544 | 0.852622 | 4.09E-61 | -1.69E-46 |
| MS.gene056366 | MS.gene54544 | 0.81774 | 2.82E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene54544 | 0.804444 | 2.15E-49 | -1.69E-46 |
| MS.gene056552 | MS.gene54544 | 0.802838 | 4.64E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene54544 | 0.806967 | 6.36E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene54544 | 0.800327 | 1.52E-48 | -1.69E-46 |
| MS.gene057027 | MS.gene54544 | 0.807156 | 5.80E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene54544 | 0.814875 | 1.23E-51 | -1.69E-46 |
| MS.gene057414 | MS.gene54544 | 0.811805 | 5.83E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene54544 | 0.82746 | 1.55E-54 | -1.69E-46 |
| MS.gene057915 | MS.gene54544 | 0.844178 | 8.88E-59 | -1.69E-46 |
| MS.gene057980 | MS.gene54544 | 0.805599 | 1.24E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene54544 | 0.807358 | 5.26E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene54544 | 0.837501 | 5.01E-57 | -1.69E-46 |
| MS.gene058636 | MS.gene54544 | 0.881163 | 3.01E-70 | -1.69E-46 |
| MS.gene058829 | MS.gene54544 | 0.836624 | 8.39E-57 | -1.69E-46 |
| MS.gene058906 | MS.gene54544 | 0.811521 | 6.71E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene54544 | 0.836976 | 6.83E-57 | -1.69E-46 |
| MS.gene059084 | MS.gene54544 | 0.804768 | 1.84E-49 | -1.69E-46 |
| MS.gene059220 | MS.gene54544 | 0.817548 | 3.12E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene54544 | 0.838478 | 2.81E-57 | -1.69E-46 |
| MS.gene059625 | MS.gene54544 | 0.830244 | 3.28E-55 | -1.69E-46 |
| MS.gene059725 | MS.gene54544 | 0.821883 | 3.19E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene54544 | 0.810722 | 1.00E-50 | -1.69E-46 |
| MS.gene059937 | MS.gene54544 | 0.822644 | 2.12E-53 | -1.69E-46 |
| MS.gene060101 | MS.gene54544 | 0.81854 | 1.86E-52 | -1.69E-46 |
| MS.gene060310 | MS.gene54544 | 0.808021 | 3.80E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene54544 | 0.818075 | 2.37E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene54544 | 0.809105 | 2.23E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene54544 | 0.831178 | 1.93E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene54544 | 0.843419 | 1.42E-58 | -1.69E-46 |
| MS.gene060619 | MS.gene54544 | 0.803075 | 4.14E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene54544 | 0.837766 | 4.28E-57 | -1.69E-46 |
| MS.gene060803 | MS.gene54544 | 0.80109 | 1.06E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54544.t1 | AT5G24340 | 62.198 | 373 | 127 | 4 | 1 | 369 | 124 | 486 | 1.31e-153 | 442 |
| MS.gene54544.t1 | AT5G24340 | 62.198 | 373 | 127 | 4 | 1 | 369 | 124 | 486 | 5.14e-153 | 441 |
Find 0 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAAAAACTAGTTT+TGG | - | 8620:8421-8440 | MS.gene54544:intron | 10.0% |
| !! | AAAAAAACATAAATGTTCTT+TGG | + | 8620:9321-9340 | MS.gene54544:intergenic | 15.0% |
| !! | ACATGAATAAAATAATTGTA+AGG | + | 8620:9077-9096 | MS.gene54544:intergenic | 15.0% |
| !! | ATTCTGTAACTAATAATATT+TGG | + | 8620:9587-9606 | MS.gene54544:intergenic | 15.0% |
| !! | TATGTTTATTGAGTTTAAAA+AGG | - | 8620:9609-9628 | MS.gene54544:intron | 15.0% |
| !!! | ATAATACTTTTCTAAATCAA+AGG | + | 8620:8458-8477 | MS.gene54544:intergenic | 15.0% |
| !! | AACTGAATTATATTTGCTTT+AGG | - | 8620:9821-9840 | MS.gene54544:intron | 20.0% |
| !! | AAGAATATTAAAGCTTTACA+TGG | + | 8620:9013-9032 | MS.gene54544:intergenic | 20.0% |
| !! | AGTCAAATTAATATTTAACC+TGG | - | 8620:12088-12107 | MS.gene54544:intron | 20.0% |
| !! | ATATTTATTGAAATGCGTTA+TGG | - | 8620:11431-11450 | MS.gene54544:intron | 20.0% |
| !! | ATGTATATAATAGGACATAA+GGG | - | 8620:9704-9723 | MS.gene54544:intron | 20.0% |
| !! | CTAGTTTCTATCTTAAAAAA+AGG | + | 8620:8497-8516 | MS.gene54544:intergenic | 20.0% |
| !! | TAAGTTCATTATTATTTGTG+TGG | - | 8620:11675-11694 | MS.gene54544:intron | 20.0% |
| !! | TAGTATAACATTATCTTTCA+AGG | - | 8620:11966-11985 | MS.gene54544:intron | 20.0% |
| !! | TGAGTTTAAAAAGGAATAAT+AGG | - | 8620:9618-9637 | MS.gene54544:intron | 20.0% |
| !! | TTCTTGTTAAATAAGCAATT+TGG | + | 8620:12416-12435 | MS.gene54544:intergenic | 20.0% |
| !! | TTTAAAAAATGCAAACTGAA+AGG | + | 8620:10429-10448 | MS.gene54544:intergenic | 20.0% |
| !!! | AATTTGACTTAAAAAATCCA+TGG | + | 8620:12077-12096 | MS.gene54544:intergenic | 20.0% |
| !!! | ATAAGCAATTTGGTATTTTT+TGG | + | 8620:12406-12425 | MS.gene54544:intergenic | 20.0% |
| !!! | ATTTGACTTAAAAAATCCAT+GGG | + | 8620:12076-12095 | MS.gene54544:intergenic | 20.0% |
| !!! | GTATAGAATGTTAATTTTCA+TGG | - | 8620:12005-12024 | MS.gene54544:intron | 20.0% |
| !!! | TACTTAGATTTCAAGTATAA+AGG | - | 8620:12145-12164 | MS.gene54544:intron | 20.0% |
| !!! | TATATGGCTTATTTTATAAC+TGG | - | 8620:10226-10245 | MS.gene54544:intron | 20.0% |
| !!! | TCGTTTGTTAAAATAAATAG+TGG | - | 8620:10452-10471 | MS.gene54544:CDS | 20.0% |
| !!! | TTAACAAGAATTTAGAGTTT+TGG | - | 8620:12426-12445 | MS.gene54544:CDS | 20.0% |
| !!! | TTTTTTGTCTTTTCTTGATA+TGG | + | 8620:10290-10309 | MS.gene54544:intergenic | 20.0% |
| ! | AAATTTCATTCCTAAGTAGA+TGG | - | 8620:9245-9264 | MS.gene54544:CDS | 25.0% |
| ! | AAGACAACTTACAAAAGATT+AGG | + | 8620:9407-9426 | MS.gene54544:intergenic | 25.0% |
| ! | AATAATACTGTAGGATACAA+AGG | + | 8620:8391-8410 | MS.gene54544:intergenic | 25.0% |
| ! | AGAAACAGGATGTATATAAT+AGG | - | 8620:9695-9714 | MS.gene54544:intron | 25.0% |
| ! | AGGAACACTAGAAAATATAT+CGG | + | 8620:8371-8390 | MS.gene54544:intergenic | 25.0% |
| ! | ATAAAATGTGAGTATGAATC+TGG | - | 8620:11508-11527 | MS.gene54544:intron | 25.0% |
| ! | ATATTCTATATCCATTCACT+AGG | - | 8620:10705-10724 | MS.gene54544:intron | 25.0% |
| ! | CAGTTTATGTTAATAGAAAC+AGG | - | 8620:9681-9700 | MS.gene54544:intron | 25.0% |
| ! | CATCTTCAGTTTAAGAAAAA+TGG | - | 8620:7941-7960 | MS.gene54544:CDS | 25.0% |
| ! | CTATCTTAAAAAAAGGAGTT+CGG | + | 8620:8490-8509 | MS.gene54544:intergenic | 25.0% |
| ! | GATCTTCGTTAATATTTAGT+TGG | + | 8620:12295-12314 | MS.gene54544:intergenic | 25.0% |
| ! | GATGTATATAATAGGACATA+AGG | - | 8620:9703-9722 | MS.gene54544:intron | 25.0% |
| ! | GCGAATTAATTTAAACTAGA+GGG | + | 8620:10086-10105 | MS.gene54544:intergenic | 25.0% |
| ! | GTTCATAAAAATTGAAGAGA+GGG | + | 8620:11264-11283 | MS.gene54544:intergenic | 25.0% |
| ! | TACACAGAATTTCTTGTAAT+TGG | - | 8620:10734-10753 | MS.gene54544:intron | 25.0% |
| ! | TATTCTATATCCATTCACTA+GGG | - | 8620:10706-10725 | MS.gene54544:intron | 25.0% |
| ! | TCAATTTCTCAAGCAATATA+TGG | + | 8620:12222-12241 | MS.gene54544:intergenic | 25.0% |
| ! | TGGAGCATATAATATATGAT+CGG | - | 8620:11361-11380 | MS.gene54544:intron | 25.0% |
| ! | TGTATATAATAGGACATAAG+GGG | - | 8620:9705-9724 | MS.gene54544:intron | 25.0% |
| ! | TTAGGAATGAAATTTGCATA+AGG | + | 8620:9240-9259 | MS.gene54544:intergenic | 25.0% |
| ! | TTCAACAAAAATTCATCCAT+TGG | + | 8620:10999-11018 | MS.gene54544:intergenic | 25.0% |
| ! | TTCAGTTTAAGAAAAATGGA+AGG | - | 8620:7945-7964 | MS.gene54544:CDS | 25.0% |
| ! | TTGAAAATTGTCAGAAAACA+TGG | - | 8620:11014-11033 | MS.gene54544:intron | 25.0% |
| ! | TTTGTCGAAAATAATACTGT+AGG | + | 8620:8400-8419 | MS.gene54544:intergenic | 25.0% |
| !! | AATTTCTTCTGAAGAGTTTA+TGG | + | 8620:10188-10207 | MS.gene54544:intergenic | 25.0% |
| !! | TAGCATTTTCAGTTACTATA+AGG | - | 8620:9794-9813 | MS.gene54544:intron | 25.0% |
| !! | TTCTCTAAATGTTTTTCTCT+GGG | + | 8620:11125-11144 | MS.gene54544:intergenic | 25.0% |
| !!! | AAAACAAGATGTTAGCTTTT+TGG | + | 8620:8577-8596 | MS.gene54544:intergenic | 25.0% |
| !!! | CACAATTAGAAGTTAGTTTT+CGG | - | 8620:8200-8219 | MS.gene54544:intron | 25.0% |
| !!! | CAGCATTCTATTTTTCAAAT+TGG | - | 8620:10136-10155 | MS.gene54544:intron | 25.0% |
| AAAAAATGAACAGCTACTTG+AGG | - | 8620:11853-11872 | MS.gene54544:intron | 30.0% | |
| AAAATTATTTGTGCCATCCT+TGG | - | 8620:10308-10327 | MS.gene54544:intron | 30.0% | |
| AACTATTTGTGGAGAATTGT+TGG | - | 8620:7997-8016 | MS.gene54544:CDS | 30.0% | |
| AAGAGTTTGTCAACTATTTG+TGG | - | 8620:7986-8005 | MS.gene54544:CDS | 30.0% | |
| ACACTCGTAATATCCAAATA+CGG | + | 8620:7914-7933 | MS.gene54544:intergenic | 30.0% | |
| ACATGCTTTCTCAAATTTGT+TGG | - | 8620:9499-9518 | MS.gene54544:CDS | 30.0% | |
| ACCCAAAAAGTTGAATTGAA+TGG | + | 8620:8062-8081 | MS.gene54544:intergenic | 30.0% | |
| ACTATTTGTGGAGAATTGTT+GGG | - | 8620:7998-8017 | MS.gene54544:CDS | 30.0% | |
| ACTTCGAATGGATAATCTAT+TGG | + | 8620:10802-10821 | MS.gene54544:intergenic | 30.0% | |
| ATGTCAGACATCAATATACA+CGG | - | 8620:9093-9112 | MS.gene54544:intron | 30.0% | |
| ATTGAAATGCGTTATGGAAA+AGG | - | 8620:11437-11456 | MS.gene54544:intron | 30.0% | |
| ATTTAGAGAACTTTGATGAG+TGG | - | 8620:11135-11154 | MS.gene54544:intron | 30.0% | |
| CAAAACATTTACGTTGTGTT+GGG | - | 8620:11560-11579 | MS.gene54544:intron | 30.0% | |
| CAAAATACATAAATATCGCC+AGG | - | 8620:8945-8964 | MS.gene54544:intron | 30.0% | |
| CCACATAGACTCTATTATAT+AGG | - | 8620:8859-8878 | MS.gene54544:intron | 30.0% | |
| CCTATATAATAGAGTCTATG+TGG | + | 8620:8862-8881 | MS.gene54544:intergenic | 30.0% | |
| CGCGAATTAATTTAAACTAG+AGG | + | 8620:10087-10106 | MS.gene54544:intergenic | 30.0% | |
| CGTTCATAAAAATTGAAGAG+AGG | + | 8620:11265-11284 | MS.gene54544:intergenic | 30.0% | |
| CTTTCAGTAAAAACCTTCTT+CGG | + | 8620:9961-9980 | MS.gene54544:intergenic | 30.0% | |
| GATGTGAAAGTAAGATCATA+TGG | + | 8620:10675-10694 | MS.gene54544:intergenic | 30.0% | |
| GATTCAAAAGTCATCATGTA+GGG | - | 8620:10965-10984 | MS.gene54544:intron | 30.0% | |
| GCAAAGTGAAACTATTAATC+AGG | + | 8620:10354-10373 | MS.gene54544:intergenic | 30.0% | |
| GTCATAAACGTAGATATGTT+TGG | - | 8620:8518-8537 | MS.gene54544:CDS | 30.0% | |
| GTTGGAAAGTTTCAATAATC+TGG | + | 8620:12277-12296 | MS.gene54544:intergenic | 30.0% | |
| TAGTAACTGAAAATGCTAGT+TGG | + | 8620:9792-9811 | MS.gene54544:intergenic | 30.0% | |
| TAGTTAAATTCCAATCACTC+TGG | - | 8620:11341-11360 | MS.gene54544:intron | 30.0% | |
| TATACCCTTTCGTTAATCTT+TGG | - | 8620:11290-11309 | MS.gene54544:intron | 30.0% | |
| TATCTTTCAAGGAACTCTTA+TGG | - | 8620:11977-11996 | MS.gene54544:intron | 30.0% | |
| TCTTCAGTTAGAACTTAGAA+GGG | - | 8620:9423-9442 | MS.gene54544:CDS | 30.0% | |
| TGATTCAAAAGTCATCATGT+AGG | - | 8620:10964-10983 | MS.gene54544:intron | 30.0% | |
| TGCATCACTTATAAAGACAA+TGG | - | 8620:10546-10565 | MS.gene54544:intron | 30.0% | |
| TTGCTGTATTAAATGTAGTC+AGG | - | 8620:8328-8347 | MS.gene54544:intron | 30.0% | |
| TTGCTTGCTTGGAATATTTA+AGG | - | 8620:9917-9936 | MS.gene54544:intron | 30.0% | |
| TTTATTAAATTCTACGCTGC+AGG | - | 8620:10759-10778 | MS.gene54544:intron | 30.0% | |
| TTTGTTGAATCCATCTACTT+AGG | + | 8620:9258-9277 | MS.gene54544:intergenic | 30.0% | |
| ! | AGCCATTCAATTCAACTTTT+TGG | - | 8620:8057-8076 | MS.gene54544:CDS | 30.0% |
| ! | ATATACACGGTGTCAAAATT+AGG | - | 8620:9106-9125 | MS.gene54544:intron | 30.0% |
| ! | ATTTGTTAGCTTAAACTTCC+AGG | + | 8620:8681-8700 | MS.gene54544:intergenic | 30.0% |
| ! | CAGAAGAAATTATGATGATG+CGG | - | 8620:10197-10216 | MS.gene54544:intron | 30.0% |
| ! | CTGGCGATATTTATGTATTT+TGG | + | 8620:8947-8966 | MS.gene54544:intergenic | 30.0% |
| ! | GCCATTCAATTCAACTTTTT+GGG | - | 8620:8058-8077 | MS.gene54544:CDS | 30.0% |
| ! | GTTCTCTAAATGTTTTTCTC+TGG | + | 8620:11126-11145 | MS.gene54544:intergenic | 30.0% |
| ! | TGGAATATTTAAGGTCTTTC+AGG | - | 8620:9926-9945 | MS.gene54544:intron | 30.0% |
| !! | ATTAGGTGCTTTATTTCTGT+AGG | - | 8620:9123-9142 | MS.gene54544:intron | 30.0% |
| !! | TTTAGAGTTTTGGCAATGTA+TGG | - | 8620:12436-12455 | MS.gene54544:CDS | 30.0% |
| !!! | AAAACTAGTTTTGGAAGCTA+AGG | - | 8620:8430-8449 | MS.gene54544:intron | 30.0% |
| !!! | AAACTAGTTTTGGAAGCTAA+GGG | - | 8620:8431-8450 | MS.gene54544:intron | 30.0% |
| !!! | CAATTTTAGCTGTGTCATTA+TGG | + | 8620:12247-12266 | MS.gene54544:intergenic | 30.0% |
| AAAGTTCCTCTGTGATGTTA+TGG | - | 8620:11205-11224 | MS.gene54544:intron | 35.0% | |
| AACCTCCAAAGATTAACGAA+AGG | + | 8620:11298-11317 | MS.gene54544:intergenic | 35.0% | |
| AAGAAGCAGTTGCCAATTAA+TGG | - | 8620:11095-11114 | MS.gene54544:intron | 35.0% | |
| AATGCGTTATGGAAAAGGAA+AGG | - | 8620:11442-11461 | MS.gene54544:intron | 35.0% | |
| ACAATGATAATTCATCCGAC+AGG | + | 8620:11728-11747 | MS.gene54544:intergenic | 35.0% | |
| ACATTAATGCTGCCAACATA+AGG | - | 8620:9359-9378 | MS.gene54544:CDS | 35.0% | |
| ACCATGCAAAAAATGAGCTA+GGG | + | 8620:12181-12200 | MS.gene54544:intergenic | 35.0% | |
| ACCTCCAAAGATTAACGAAA+GGG | + | 8620:11297-11316 | MS.gene54544:intergenic | 35.0% | |
| AGAAGCAGTTGCCAATTAAT+GGG | - | 8620:11096-11115 | MS.gene54544:intron | 35.0% | |
| AGATAACTAGAGACATGTGA+TGG | - | 8620:8806-8825 | MS.gene54544:CDS | 35.0% | |
| ATAACATCACAGAGGAACTT+TGG | + | 8620:11206-11225 | MS.gene54544:intergenic | 35.0% | |
| ATACTCTATTACCTTGGTTC+AGG | + | 8620:11616-11635 | MS.gene54544:intergenic | 35.0% | |
| ATCTGGTAAGGAATATACTC+AGG | - | 8620:11525-11544 | MS.gene54544:intron | 35.0% | |
| ATGTGAGTATGAATCTGGTA+AGG | - | 8620:11513-11532 | MS.gene54544:intron | 35.0% | |
| ATTATATGCTCCAGAGTGAT+TGG | + | 8620:11354-11373 | MS.gene54544:intergenic | 35.0% | |
| CAAATGGAAAATTCCAAGGA+TGG | + | 8620:10324-10343 | MS.gene54544:intergenic | 35.0% | |
| CCAAGACCTCAAAAAAGAAA+CGG | - | 8620:11072-11091 | MS.gene54544:intron | 35.0% | |
| CTATTTGTGGAGAATTGTTG+GGG | - | 8620:7999-8018 | MS.gene54544:CDS | 35.0% | |
| CTTAATACATGAACAGTGAG+CGG | - | 8620:8767-8786 | MS.gene54544:CDS | 35.0% | |
| GAAAGTTTCATACCAATCTC+TGG | - | 8620:9976-9995 | MS.gene54544:intron | 35.0% | |
| GAAGCCATGATACAAGTTTA+AGG | + | 8620:8727-8746 | MS.gene54544:intergenic | 35.0% | |
| GACACAAATGGAAAATTCCA+AGG | + | 8620:10328-10347 | MS.gene54544:intergenic | 35.0% | |
| GATGATGCGGAAAAGATATA+TGG | - | 8620:10210-10229 | MS.gene54544:intron | 35.0% | |
| GCAAAACATTTACGTTGTGT+TGG | - | 8620:11559-11578 | MS.gene54544:intron | 35.0% | |
| GTCTTCAGTTAGAACTTAGA+AGG | - | 8620:9422-9441 | MS.gene54544:CDS | 35.0% | |
| GTGTAGTTCAAAGTTCAAAC+CGG | + | 8620:8840-8859 | MS.gene54544:intergenic | 35.0% | |
| GTTTAAACCAGTCCTTATGT+TGG | + | 8620:9374-9393 | MS.gene54544:intergenic | 35.0% | |
| TCAAAGCATAAGTTGCAAGT+TGG | - | 8620:9032-9051 | MS.gene54544:intron | 35.0% | |
| TCAAGATGCACAAAATGCAA+TGG | - | 8620:12323-12342 | MS.gene54544:intron | 35.0% | |
| TCTCTAGTTATCTCTCATTC+AGG | + | 8620:8799-8818 | MS.gene54544:intergenic | 35.0% | |
| TGACCAAGTAGCAGATTATT+GGG | - | 8620:10383-10402 | MS.gene54544:intron | 35.0% | |
| TGTGTACAGAAAACAAGTAG+TGG | - | 8620:8091-8110 | MS.gene54544:intron | 35.0% | |
| TTAATACATGAACAGTGAGC+GGG | - | 8620:8768-8787 | MS.gene54544:CDS | 35.0% | |
| TTAATCAGGCAAGACACAAA+TGG | + | 8620:10340-10359 | MS.gene54544:intergenic | 35.0% | |
| TTCTTGATATGGAACTCAAG+TGG | + | 8620:10279-10298 | MS.gene54544:intergenic | 35.0% | |
| TTCTTGTTCTGATGTTGTTC+AGG | - | 8620:10920-10939 | MS.gene54544:intron | 35.0% | |
| TTGACCAAGTAGCAGATTAT+TGG | - | 8620:10382-10401 | MS.gene54544:intron | 35.0% | |
| TTGGATCGATTAAGTTTGAC+TGG | - | 8620:10155-10174 | MS.gene54544:intron | 35.0% | |
| TTGGCAGCATTAATGTTCTT+TGG | + | 8620:9355-9374 | MS.gene54544:intergenic | 35.0% | |
| TTGTATAAAACACATCGTCC+TGG | - | 8620:8660-8679 | MS.gene54544:intron | 35.0% | |
| TTGTCAGAAAACATGGTGAT+AGG | - | 8620:11021-11040 | MS.gene54544:intron | 35.0% | |
| ! | AGAAGCATACTCTATTACCT+TGG | + | 8620:11622-11641 | MS.gene54544:intergenic | 35.0% |
| ! | ATCTTTGGAGGTTAAGCAAT+AGG | - | 8620:11305-11324 | MS.gene54544:intron | 35.0% |
| ! | ATGGCCTTAAACTTGTATCA+TGG | - | 8620:8720-8739 | MS.gene54544:intron | 35.0% |
| ! | ATTTAAGGTCTTTCAGGCAA+CGG | - | 8620:9932-9951 | MS.gene54544:intron | 35.0% |
| ! | CAAATATCACAGCATTGAGT+AGG | - | 8620:8139-8158 | MS.gene54544:intron | 35.0% |
| ! | CACACAATTTTGTGAAGCTT+TGG | - | 8620:10881-10900 | MS.gene54544:intron | 35.0% |
| ! | GAGTTTTCACTTAGCATATG+AGG | - | 8620:8280-8299 | MS.gene54544:intron | 35.0% |
| ! | TCTATAGTTTGTCCAGAGAT+TGG | + | 8620:9991-10010 | MS.gene54544:intergenic | 35.0% |
| ! | TGGTGATAGGATTTTGCTAA+AGG | - | 8620:11034-11053 | MS.gene54544:intron | 35.0% |
| ! | TTCTATTTTCCTCTTCCTGT+CGG | - | 8620:11710-11729 | MS.gene54544:intron | 35.0% |
| ! | TTTGGAACCTGAAATTCCAA+TGG | + | 8620:9762-9781 | MS.gene54544:intergenic | 35.0% |
| !! | AAGGAATATACTCAGGTTGA+AGG | - | 8620:11532-11551 | MS.gene54544:intron | 35.0% |
| !!! | AAGTTAGTTTTCGGTGTTTG+TGG | - | 8620:8209-8228 | MS.gene54544:intron | 35.0% |
| !!! | AGAAAAGAGTGCTTTTGACA+CGG | - | 8620:11777-11796 | MS.gene54544:intron | 35.0% |
| !!! | CGTTTCTTTTTTGAGGTCTT+GGG | + | 8620:11074-11093 | MS.gene54544:intergenic | 35.0% |
| !!! | CTTCTTCCGTTTCTTTTTTG+AGG | + | 8620:11081-11100 | MS.gene54544:intergenic | 35.0% |
| ACAGCAAAGACAAACTTTCC+AGG | + | 8620:12109-12128 | MS.gene54544:intergenic | 40.0% | |
| ACCCTTTCGTTAATCTTTGG+AGG | - | 8620:11293-11312 | MS.gene54544:intron | 40.0% | |
| ACGAAATACAACACAACCAG+AGG | + | 8620:10014-10033 | MS.gene54544:intergenic | 40.0% | |
| AGAGAATGAGTGCACATGAA+TGG | - | 8620:8701-8720 | MS.gene54544:intron | 40.0% | |
| ATAATTCATCCGACAGGAAG+AGG | + | 8620:11722-11741 | MS.gene54544:intergenic | 40.0% | |
| ATAGCCTCTTCAGTTGAAAG+TGG | + | 8620:12365-12384 | MS.gene54544:intergenic | 40.0% | |
| ATGCAAAAAATGAGCTAGGG+AGG | + | 8620:12178-12197 | MS.gene54544:intergenic | 40.0% | |
| ATGCTAGTTGGCAAAGTCTT+TGG | + | 8620:9780-9799 | MS.gene54544:intergenic | 40.0% | |
| ATGTAGGGATACTAAGCCAA+TGG | - | 8620:10980-10999 | MS.gene54544:intron | 40.0% | |
| CACCATGCAAAAAATGAGCT+AGG | + | 8620:12182-12201 | MS.gene54544:intergenic | 40.0% | |
| CCATTCGAAGTGCAAATCTT+GGG | - | 8620:10811-10830 | MS.gene54544:intron | 40.0% | |
| CTTCCCAATAATCTGCTACT+TGG | + | 8620:10389-10408 | MS.gene54544:intergenic | 40.0% | |
| GAATGTGTTCTGCATCAAGA+AGG | - | 8620:9164-9183 | MS.gene54544:CDS | 40.0% | |
| GATGCACAAAATGCAATGGA+AGG | - | 8620:12327-12346 | MS.gene54544:intron | 40.0% | |
| GGACTGTCACCAACTTTATT+GGG | - | 8620:12457-12476 | MS.gene54544:CDS | 40.0% | |
| GGTGTTCATCATTATCAGTG+TGG | - | 8620:11382-11401 | MS.gene54544:intron | 40.0% | |
| GTGTATACATCCCTAGTGAA+TGG | + | 8620:10719-10738 | MS.gene54544:intergenic | 40.0% | |
| GTTGGGGATTTCACTATCTA+AGG | - | 8620:8015-8034 | MS.gene54544:CDS | 40.0% | |
| GTTGTGACCAATCACTACAT+TGG | + | 8620:9851-9870 | MS.gene54544:intergenic | 40.0% | |
| GTTTGCTCCATTGGAATTTC+AGG | - | 8620:9752-9771 | MS.gene54544:intron | 40.0% | |
| TCAAGGAACTCTTATGGAGT+AGG | - | 8620:11983-12002 | MS.gene54544:intron | 40.0% | |
| TCCATTCGAAGTGCAAATCT+TGG | - | 8620:10810-10829 | MS.gene54544:intron | 40.0% | |
| TGCTTACCATAACATCACAG+AGG | + | 8620:11214-11233 | MS.gene54544:intergenic | 40.0% | |
| TGGACTGTCACCAACTTTAT+TGG | - | 8620:12456-12475 | MS.gene54544:CDS | 40.0% | |
| TTCTCTCACAAGAGTCAGTT+AGG | - | 8620:8744-8763 | MS.gene54544:intron | 40.0% | |
| ! | TGAGACTTTGCTGCATTGAT+TGG | - | 8620:10047-10066 | MS.gene54544:intron | 40.0% |
| !! | ATATACTCAGGTTGAAGGCT+TGG | - | 8620:11537-11556 | MS.gene54544:intron | 40.0% |
| !! | TTGGGTTGAAAGAGCTATTC+AGG | - | 8620:10829-10848 | MS.gene54544:intron | 40.0% |
| !!! | CCGTTTCTTTTTTGAGGTCT+TGG | + | 8620:11075-11094 | MS.gene54544:intergenic | 40.0% |
| !!! | CTAGCTCATTTTTTGCATGG+TGG | - | 8620:12180-12199 | MS.gene54544:intron | 40.0% |
| !!! | GAAAAGAGTGCTTTTGACAC+GGG | - | 8620:11778-11797 | MS.gene54544:intron | 40.0% |
| !!! | TCCCTAGCTCATTTTTTGCA+TGG | - | 8620:12177-12196 | MS.gene54544:intron | 40.0% |
| AACTATTGGATCCCAAGGTG+CGG | + | 8620:11168-11187 | MS.gene54544:intergenic | 45.0% | |
| AATGCTGCCAACATAAGGAC+TGG | - | 8620:9364-9383 | MS.gene54544:CDS | 45.0% | |
| AATGTGCTCCCTGCTCATAA+CGG | - | 8620:12037-12056 | MS.gene54544:intron | 45.0% | |
| ACCTTGGGATCCAATAGTTG+GGG | - | 8620:11169-11188 | MS.gene54544:intron | 45.0% | |
| AGAGGCTATTGAAGCTGCAA+AGG | - | 8620:12376-12395 | MS.gene54544:CDS | 45.0% | |
| AGGAGCTCCAATGTAGTGAT+TGG | - | 8620:9841-9860 | MS.gene54544:intron | 45.0% | |
| AGTCAGTCACTATTCAGACC+TGG | + | 8620:8966-8985 | MS.gene54544:intergenic | 45.0% | |
| ATGGATGCTCATTGCTTGCT+TGG | - | 8620:9906-9925 | MS.gene54544:intron | 45.0% | |
| CAAGCATGTGTTTGCTCCAT+TGG | - | 8620:9743-9762 | MS.gene54544:intron | 45.0% | |
| CACCTTGGGATCCAATAGTT+GGG | - | 8620:11168-11187 | MS.gene54544:intron | 45.0% | |
| CCAGATGACATATGCAGCTA+TGG | - | 8620:9887-9906 | MS.gene54544:intron | 45.0% | |
| CCATAGCTGCATATGTCATC+TGG | + | 8620:9890-9909 | MS.gene54544:intergenic | 45.0% | |
| CCCAAGATTTGCACTTCGAA+TGG | + | 8620:10814-10833 | MS.gene54544:intergenic | 45.0% | |
| CTGAATAGTGACTGACTGCA+AGG | - | 8620:8969-8988 | MS.gene54544:intron | 45.0% | |
| CTGGACAAACTATAGACCTC+TGG | - | 8620:9995-10014 | MS.gene54544:intron | 45.0% | |
| CTGTCACCAACTTTATTGGG+AGG | - | 8620:12460-12479 | MS.gene54544:CDS | 45.0% | |
| CTTCAAAGAAGCCTGAACCA+AGG | - | 8620:11602-11621 | MS.gene54544:intron | 45.0% | |
| GAGAACTTTGATGAGTGGCA+AGG | - | 8620:11140-11159 | MS.gene54544:intron | 45.0% | |
| GAGGCTATTGAAGCTGCAAA+GGG | - | 8620:12377-12396 | MS.gene54544:CDS | 45.0% | |
| TATCCATCTCCCCCAACTAT+TGG | + | 8620:11182-11201 | MS.gene54544:intergenic | 45.0% | |
| TTCAGGTGATACCTTCAGCA+GGG | - | 8620:10937-10956 | MS.gene54544:intron | 45.0% | |
| ! | ACATGTGATGGTGAAACTGC+CGG | - | 8620:8818-8837 | MS.gene54544:CDS | 45.0% |
| ! | GAAGCCACTTTCAACTGAAG+AGG | - | 8620:12358-12377 | MS.gene54544:CDS | 45.0% |
| ! | GGTTCAGGCTTCTTTGAAGA+AGG | + | 8620:11601-11620 | MS.gene54544:intergenic | 45.0% |
| ! | GTCATCTGGTCTTCTGTAAG+AGG | + | 8620:9876-9895 | MS.gene54544:intergenic | 45.0% |
| ! | TCTCTGGGAAGCCCATTAAT+TGG | + | 8620:11110-11129 | MS.gene54544:intergenic | 45.0% |
| AACTCTAGCCCGTTATGAGC+AGG | + | 8620:12049-12068 | MS.gene54544:intergenic | 50.0% | |
| ACTCTAGCCCGTTATGAGCA+GGG | + | 8620:12048-12067 | MS.gene54544:intergenic | 50.0% | |
| ATGTGCTCCCTGCTCATAAC+GGG | - | 8620:12038-12057 | MS.gene54544:intron | 50.0% | |
| ATTCTACGCTGCAGGAGAGT+TGG | - | 8620:10767-10786 | MS.gene54544:intron | 50.0% | |
| CCTTGGGATCCAATAGTTGG+GGG | - | 8620:11170-11189 | MS.gene54544:intron | 50.0% | |
| GATCCAATAGTTGGGGGAGA+TGG | - | 8620:11176-11195 | MS.gene54544:intron | 50.0% | |
| GCACCTTGGGATCCAATAGT+TGG | - | 8620:11167-11186 | MS.gene54544:intron | 50.0% | |
| GTTCAGGTGATACCTTCAGC+AGG | - | 8620:10936-10955 | MS.gene54544:intron | 50.0% | |
| TCAGGTGATACCTTCAGCAG+GGG | - | 8620:10938-10957 | MS.gene54544:intron | 50.0% | |
| CCCCCAACTATTGGATCCCA+AGG | + | 8620:11173-11192 | MS.gene54544:intergenic | 55.0% | |
| TGAATCACTGCCCCTGCTGA+AGG | + | 8620:10951-10970 | MS.gene54544:intergenic | 55.0% | |
| CAGGCAACGGTTGCCGAAGA+AGG | - | 8620:9945-9964 | MS.gene54544:intron | 60.0% | |
| ! | CGGGCTAGAGTTTGAGCCCA+TGG | - | 8620:12057-12076 | MS.gene54544:intron | 60.0% |
| !! | AGTGGCAAGGTACCGCACCT+TGG | - | 8620:11153-11172 | MS.gene54544:intron | 60.0% |
| !! | GTGGCAAGGTACCGCACCTT+GGG | - | 8620:11154-11173 | MS.gene54544:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 8620 | gene | 7905 | 12481 | 7905 | ID=MS.gene54544 |
| 8620 | mRNA | 7905 | 12481 | 7905 | ID=MS.gene54544.t1;Parent=MS.gene54544 |
| 8620 | exon | 12350 | 12481 | 12350 | ID=MS.gene54544.t1.exon1;Parent=MS.gene54544.t1 |
| 8620 | CDS | 12350 | 12481 | 12350 | ID=cds.MS.gene54544.t1;Parent=MS.gene54544.t1 |
| 8620 | exon | 10420 | 10543 | 10420 | ID=MS.gene54544.t1.exon2;Parent=MS.gene54544.t1 |
| 8620 | CDS | 10420 | 10543 | 10420 | ID=cds.MS.gene54544.t1;Parent=MS.gene54544.t1 |
| 8620 | exon | 9160 | 9605 | 9160 | ID=MS.gene54544.t1.exon3;Parent=MS.gene54544.t1 |
| 8620 | CDS | 9160 | 9605 | 9160 | ID=cds.MS.gene54544.t1;Parent=MS.gene54544.t1 |
| 8620 | exon | 8763 | 8839 | 8763 | ID=MS.gene54544.t1.exon4;Parent=MS.gene54544.t1 |
| 8620 | CDS | 8763 | 8839 | 8763 | ID=cds.MS.gene54544.t1;Parent=MS.gene54544.t1 |
| 8620 | exon | 8512 | 8635 | 8512 | ID=MS.gene54544.t1.exon5;Parent=MS.gene54544.t1 |
| 8620 | CDS | 8512 | 8635 | 8512 | ID=cds.MS.gene54544.t1;Parent=MS.gene54544.t1 |
| 8620 | exon | 7905 | 8108 | 7905 | ID=MS.gene54544.t1.exon6;Parent=MS.gene54544.t1 |
| 8620 | CDS | 7905 | 8108 | 7905 | ID=cds.MS.gene54544.t1;Parent=MS.gene54544.t1 |
| Gene Sequence |
| Protein sequence |
