AlfalfaGEDB | MS.gene21551

M. sativa cultivar XinJiangDaYe / MS.gene21551

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21551.t1	RHN81198.1	89	657	42	3	1	627	76	732	1.20E-270	942.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21551.t1	Q9ZVT8	31.8	737	383	17	1	623	89	819	2.1e-69	265.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21551.t1	G7I2V7	89.0	657	42	3	1	627	110	766	9.0e-271	942.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene21551	0.81634	5.81E-52	-1.69E-46
MS.gene049190	MS.gene21551	0.805092	1.58E-49	-1.69E-46
MS.gene049255	MS.gene21551	0.831024	2.11E-55	-1.69E-46
MS.gene049341	MS.gene21551	0.830127	3.50E-55	-1.69E-46
MS.gene049672	MS.gene21551	0.81527	1.01E-51	-1.69E-46
MS.gene050020	MS.gene21551	0.801632	8.22E-49	-1.69E-46
MS.gene05045	MS.gene21551	0.803122	4.05E-49	-1.69E-46
MS.gene050689	MS.gene21551	0.832465	9.31E-56	-1.69E-46
MS.gene050815	MS.gene21551	0.810861	9.34E-51	-1.69E-46
MS.gene051328	MS.gene21551	0.832132	1.13E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21551.t1	MTR_1g012335	56.250	96	37	2	353	448	152	242	1.95e-19	88.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 152 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTAGCTAACTTGCATC+AGG	0.490897	1.1:-65667957	MS.gene21551:CDS
AAATCTGAGACGGTGACGAC+GGG	0.504966	1.1:-65666040	MS.gene21551:CDS
AAATCTTCTAGCCAATACTG+AGG	0.732844	1.1:-65667918	MS.gene21551:intron
AACACACTGAATACTTTGAA+GGG	0.509898	1.1:-65669201	MS.gene21551:CDS
AACAGTAACTGAAGCAATGT+GGG	0.577399	1.1:-65669071	MS.gene21551:CDS
AACTTTCACAAATATCTCCC+AGG	0.600719	1.1:-65668894	MS.gene21551:CDS
AAGAAGGTTGTTGATTTAGG+AGG	0.522918	1.1:-65669306	MS.gene21551:CDS
AAGAGTTTACATCAGTGCTT+AGG	0.388024	1.1:-65668820	MS.gene21551:CDS
AAGGTTCAAAATTACTGTGC+TGG	0.484913	1.1:-65668476	MS.gene21551:CDS
AATCATCATTGGTTGAAATA+CGG	0.485214	1.1:+65668615	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAAAAACAGTATGCAC+AGG	+	chr1.1:65668471-65668490	None:intergenic	30.0%
AACACACTGAATACTTTGAA+GGG	-	chr1.1:65666002-65666021	MS.gene21551:CDS	30.0%
AATGTTCAGTCTGATATGAT+TGG	-	chr1.1:65666271-65666290	MS.gene21551:CDS	30.0%
AGAAAACAAGAAATCTGAGA+CGG	-	chr1.1:65669153-65669172	MS.gene21551:intron	30.0%
AGATTCTGATTTACTTTCCT+GGG	+	chr1.1:65666329-65666348	None:intergenic	30.0%
ATATACCATCATTTGTCCTA+TGG	+	chr1.1:65667728-65667747	None:intergenic	30.0%
ATCTGATTGAGCTAAAGTAT+AGG	-	chr1.1:65668409-65668428	MS.gene21551:CDS	30.0%
CAGTTAGTAATTTATCACTC+AGG	-	chr1.1:65668441-65668460	MS.gene21551:CDS	30.0%
GGTGGAGAAAAAAAATTACA+AGG	+	chr1.1:65668292-65668311	None:intergenic	30.0%
TACCTACTCTATTATTCTGA+CGG	-	chr1.1:65667411-65667430	MS.gene21551:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	65665820	65669405	65665820	ID=MS.gene21551
chr1.1	mRNA	65665820	65669405	65665820	ID=MS.gene21551.t1;Parent=MS.gene21551
chr1.1	exon	65669173	65669405	65669173	ID=MS.gene21551.t1.exon1;Parent=MS.gene21551.t1
chr1.1	CDS	65669173	65669405	65669173	ID=cds.MS.gene21551.t1;Parent=MS.gene21551.t1
chr1.1	exon	65668302	65669128	65668302	ID=MS.gene21551.t1.exon2;Parent=MS.gene21551.t1
chr1.1	CDS	65668302	65669128	65668302	ID=cds.MS.gene21551.t1;Parent=MS.gene21551.t1
chr1.1	exon	65667919	65668258	65667919	ID=MS.gene21551.t1.exon3;Parent=MS.gene21551.t1
chr1.1	CDS	65667919	65668258	65667919	ID=cds.MS.gene21551.t1;Parent=MS.gene21551.t1
chr1.1	exon	65665820	65666305	65665820	ID=MS.gene21551.t1.exon4;Parent=MS.gene21551.t1
chr1.1	CDS	65665820	65666305	65665820	ID=cds.MS.gene21551.t1;Parent=MS.gene21551.t1

Gene Sequence

>MS.gene21551

ATTGGAAGGATCCTATGGCAACTCAGCTTGAGGACTTACTGATGAGTAATTTGGAAGCAATTTTTAGTAATGCTATCAAGAAGGTTGTTGATTTAGGAGGCTACAGTCAAGAAATGGCTGAAATGGCCGTTTCAAGGAAGTCCTTGTACACAGAAGGAGACCCTCTCACAAATATTGTCTACAACACACTGAATACTTTGAAGGGGAAAGGTACTGAAACTCCTGCAGACTTTGTATTTCAAATACAAAGCAGTTACTGCATTATAGTTTGGTAGAGATGCTCGGTGTACTCCGGGAACTAAAACCCTCCTTAACAGTAACTGAAGCAATGTGGGAGTTGCTGGTACATGACTTGAGTATTACACGAGTCATTTCACCAGAAGGTCAACTGAGTGGTGGTGATTCTAGCGAGCAAAGCTCTGACAAGTCTTCTGCTCCCCCATCAAAGTTAAATGTTCAGTCTGATATGATTGGAAGTATGAGTGTGACAACTTTCACAAATATCTCCCAGGAAAGTAAATCAGAATCTAATTCTCAGCTGATGAAGAGCAGAAAACACCATAAAGAGTTTACATCAGTGCTTAGGGAGAAGTTCTTTCATATGAAAGAACCTAAAGCTTGTGGCAAAGCGGGTGTTAAATTAGGAAAGCTTACAAGCGTAAGTGGTTTGATTGTTGAAAAAAAACTCAAGCCACCATCTGAAGTTCCAAATCAGAAAATGAAACGTGGCTCCTCAAATACAAAAGGAGTTAGTATAGCAGGAGTATGCCGTATTTCAACCAATGATGATTCAGCTTTACCCGAAGGAGGTAGCGCTGCAAAATTACCCACAAAGGATGCAACATCTACTTCTCCAACAGTGAAAACAGCCAAATCAAAACCTAAGCCATTCTCCTCTTCCGCTCAAAAGGTTCAAAATTACTGTGCTGGTATTCCCTTTAATGAGGCTTTGGGCAAGTTTATCCCACGGGATGAGAAGGACGAACAAGTTTTGAAATTAGTATCTCGAGCACAAGAATTGCAGGATGAGGTGCAAAGCTGGAATGACTGGGCCAATAAGAAGGTTATGCAGGTAGCAGATAAGCTTCGCAAGCTTCAGGCGGAGTCTAAATCTTTGAAAAAGAACTGAAATTTATAAAAAAGAAAGAAAATCTTTAGAAGAGAATGCTGAGAAGAGGATCTCTGAAGTGGAGAATGCCATGGAAAATAATCAAAAGCAACTTGAGAGTGCCACTTCTTCCATACTCATTCTGGAGGCAAAGAAGTCCTTGCTAGAGAAAGAGTTGGTGTCTGCTAAGTCGTTGGCTGAAAAGTCAATGGCAAGTTATCAACAAGCACTGGAGAGAGAGCAGATGACTATTCAACAAGCCCAGTCGTGGAAAACGGAGTTGGATTTGCTTCAAGATGAACTTGAGAAAGAGAAGCAAAAGTTAGCTAACTTGCATCAGGAGATAGAAAAGGGGAAAAATCTTCTAGCCAATACTGAGGTATGTGGAATTAAGTATGTATAATAACTAATATGAAGATATATCTGAGTAAAATCTGTGTAGTTTATTCAATAATTTTAATATTAGCCCGTATCTTGAGTACCTACCTACTCTATTATTCTGACGGTCTGACTCGTGCCCCTGGACATGCATAGGCACCTAAAAAAGACACGGCGACTTCAGTTTGACCTTCCGAATAGTCAAATTTTTTTTTTAGATTTACATATACATGGTTGACAATTTTAGCCATGTACTGCAAACATAGGTGAGATGAGCGGTTAACTCTTGATATCTGAAAGATGTTCCTTCAGTCTCACTGTTAAAAAACAAATCATATATCAACTCAAAATGTTGCTTCTTGTTGCTTCTCAACCAATTAAAATGAATTCAACCAGTGTTTTGCATTCCTTTAGATTTTCCATAGGACAAATGATGGTATATGCATAACTTCACAGTTTAATTTTTTTTATTAGTTTACATATACATGGTTGACAATTTTAGCCGTGTACTGCAAACATAGGTGAGATGAGCGGTTAACTCTTGATATCTGAAAGATGTTCCTTCAGTCTCACTGTTAAAAAACAAATCATATATCAACTCAAAATGTTGCTTCTTGTTGCTTCTCAACCAATTAAAATGAATTCAACCAGTGTTTTGCATTCCTTTAGATTTTCCATAGGACAAATGATGGTATATGCATAACTTCACAGTTTAATTTTTTTGGGGTGCTGGTTTTCTGTTTCTGTTTTTTGTGGAGAGAGCAGTTTTGTTTCGGTGTGGTGCTGGGCCTTTTTCGGTCAGCAGTTTTGCTGTTTTCTGGTCTGCTGCGGTTCCTTAGTTGCTGATTGCTTCTGTGGTTTTGTGTGTAGTGACTGTTGGAGCTTTGTTGGTTGGTAGTCCAGTGGGTTGCTAGTTCTTTTCTTAGGAGTGGTTTTTTAAGGGGTTTTTGTTCGAGCCGGCGCTTTTGCGGCAACCGATTTCCCCTTGTAATTTTTTTTCTCCACCCAAGCTTATTAGTGCGCCTTGCACGGGCTTGTTGGTTAATAATATTTGGCCGTTTCAAAAAAAAAAAAGTTTATGGTTTTATGTGGTAGAAACTAGAATCTGATTGAGCTAAAGTATAGGAACAAGGTACAGTTAGTAATTTATCACTCAGGTCTTCCTGTGCATACTGTTTTTACTTTTGCATTCATATTACACAATTTACTTGTTAAATAATAAGAATTCAAATGATTCAACCAACCATGAGTGTTTAACTCATAGGCTGAAAAAAAAAAAGAATTCAACCAGTGTTTTGCATTCCTTTAGATTTTCCATAGGACAAATGATGATATATGCATAACTTCACAGTTTAAATTTTTTGATTAGTTTATTGGTTTATAGGTTAGAAACTAGAATCTGATTGAGCTAAAGTATAGGAACAGGGTACAGTGAGTCAATAATTATCACTCAGGTCTTCCTGTGCATACTGTTTTTACTTTTACATTCATATATTACACAATTTTCTTGTTAAATAATATGATTTCTGTTTTTATGATGGCCAAATTGTTTACAATTGACACTCAAACAGCTTATTATGCTACTTCCTTATTTAAATGGTGAAAACATTACAGGGTAGAGTGAAAAAGGAGAGAGCTAAGACAGAAAAAATCCTCACACAGGCTGCATACTTTAGAAAAGAAAGAGAACAGTCTGAAGCACTCATGAAAGCTGAGGAGGATGCCGTCAGAAAGAAGGCAGCTAGTCAACTGCAGGAATATGTGGACAGCATGGTAAAGCTAGAGAAGGAGATCGCTGTGCTAAGACTAAAATCTGGTTCCAAAATAAGTACTCCATCTGTGGTGAAAGAAAACAAGAAATCTGAGACGGTGACGACGGGGGGCTCCCAAGACAAACCAGCTGGTGGAAGATTGAAGCGGGAGCATGAGTGTGTCATGTGCCTATCAGAGGAGAGGTCGGTTGTTTTTCTGCCATGTGCGCATCAGGTTTTGTGTCCGAATTGCAATGAGCTCCATGAGAAGCAAGGGATGAAGGAATGCCCTTCATGTAGGACCACCATCGAATTTAGGATTCATGCCAAATTTCTTGGGCAGCAGTAG

Protein sequence

>MS.gene21551.t1

IGRILWQLSLRTYUUVIWKQFLVMLSRRLLIUEATVKKWLKWPFQGSPCTQKETLSQILSTTHUILURGKVLKLLQTLCSVYSGNUNPPUQULKQCGSCWYMTUVLHESFHQKVNUVVVILASKALTSLLLPHQSUMFSLIULEVUVUQLSQISPRKVNQNLILSUURAENTIKSLHQCLGRSSFIUKNLKLVAKRVLNUESLQAUVVULLKKNSSHHLKFQIRKUNVAPQIQKELVUQEYAVFQPMMIQLYPKEVALQNYPQRMQHLLLQQUKQPNQNLSHSPLPLKRFKITVLVFPLMRLWASLSHGMRRTNKFUNUYLEHKNCRMRCKAGMTGPIRRLCRUQISFASFRRKNLUKRMLRRGSLKWRMPWKIIKSNLRVPLLPYSFWRQRSPCURKSWCLLSRWLKSQWQVINKHWRESRULFNKPSRGKRSWICFKMNLRKRSKSULTCIRRUKRGKIFUPILRVEUKRRELRQKKSSHRLHTLEKKENSLKHSUKLRRMPSERRQLVNCRNMWTAWUSURRRSLCUDUNLVPKUVLHLWUKKTRNLRRURRGAPKTNQLVEDUSGSMSVSCAYQRRGRLFFCHVRIRFCVRIAMSSMRSKGURNALHVGPPSNLGFMPNFLGSS