Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07719.t1 | XP_004488017.1 | 95.1 | 244 | 12 | 0 | 1 | 244 | 1 | 244 | 9.50E-126 | 459.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07719.t1 | Q9LHP1 | 82.0 | 244 | 44 | 0 | 1 | 244 | 1 | 244 | 3.5e-113 | 409.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07719.t1 | A0A1S2XEA5 | 95.1 | 244 | 12 | 0 | 1 | 244 | 1 | 244 | 6.9e-126 | 459.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049441 | MS.gene07719 | 0.84024 | 9.80E-58 | -1.69E-46 |
| MS.gene049821 | MS.gene07719 | 0.808012 | 3.82E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene07719 | 0.841387 | 4.90E-58 | -1.69E-46 |
| MS.gene049825 | MS.gene07719 | 0.85023 | 1.94E-60 | -1.69E-46 |
| MS.gene049873 | MS.gene07719 | 0.825296 | 5.06E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene07719 | 0.819683 | 1.02E-52 | -1.69E-46 |
| MS.gene050303 | MS.gene07719 | 0.845104 | 5.00E-59 | -1.69E-46 |
| MS.gene050838 | MS.gene07719 | 0.811317 | 7.44E-51 | -1.69E-46 |
| MS.gene051063 | MS.gene07719 | 0.8036 | 3.23E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene07719 | 0.808927 | 2.44E-50 | -1.69E-46 |
| MS.gene051330 | MS.gene07719 | 0.837273 | 5.73E-57 | -1.69E-46 |
| MS.gene051687 | MS.gene07719 | 0.807303 | 5.40E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene07719 | 0.8673 | 1.51E-65 | -1.69E-46 |
| MS.gene051744 | MS.gene07719 | 0.814725 | 1.33E-51 | -1.69E-46 |
| MS.gene051746 | MS.gene07719 | 0.842027 | 3.32E-58 | -1.69E-46 |
| MS.gene051748 | MS.gene07719 | 0.816249 | 6.10E-52 | -1.69E-46 |
| MS.gene051791 | MS.gene07719 | 0.828832 | 7.22E-55 | -1.69E-46 |
| MS.gene05188 | MS.gene07719 | 0.840638 | 7.71E-58 | -1.69E-46 |
| MS.gene051903 | MS.gene07719 | 0.807108 | 5.94E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene07719 | 0.816627 | 5.02E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene07719 | 0.820824 | 5.59E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene07719 | 0.811498 | 6.80E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene07719 | 0.884801 | 1.41E-71 | -1.69E-46 |
| MS.gene053084 | MS.gene07719 | 0.803242 | 3.83E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene07719 | 0.825612 | 4.26E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene07719 | 0.822482 | 2.31E-53 | -1.69E-46 |
| MS.gene053294 | MS.gene07719 | 0.81316 | 2.95E-51 | -1.69E-46 |
| MS.gene05365 | MS.gene07719 | 0.812678 | 3.76E-51 | -1.69E-46 |
| MS.gene054967 | MS.gene07719 | 0.813632 | 2.32E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene07719 | 0.814177 | 1.76E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene07719 | 0.831638 | 1.49E-55 | -1.69E-46 |
| MS.gene055468 | MS.gene07719 | 0.835729 | 1.42E-56 | -1.69E-46 |
| MS.gene055580 | MS.gene07719 | -0.845324 | 4.36E-59 | -1.69E-46 |
| MS.gene055603 | MS.gene07719 | 0.804935 | 1.70E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene07719 | 0.812498 | 4.11E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene07719 | 0.870879 | 1.05E-66 | -1.69E-46 |
| MS.gene056043 | MS.gene07719 | -0.842133 | 3.11E-58 | -1.69E-46 |
| MS.gene056075 | MS.gene07719 | 0.823357 | 1.45E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene07719 | 0.869603 | 2.74E-66 | -1.69E-46 |
| MS.gene056170 | MS.gene07719 | 0.810395 | 1.18E-50 | -1.69E-46 |
| MS.gene056215 | MS.gene07719 | 0.846814 | 1.71E-59 | -1.69E-46 |
| MS.gene056403 | MS.gene07719 | 0.812771 | 3.58E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene07719 | 0.818644 | 1.76E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene07719 | 0.851029 | 1.16E-60 | -1.69E-46 |
| MS.gene05689 | MS.gene07719 | 0.826199 | 3.09E-54 | -1.69E-46 |
| MS.gene056986 | MS.gene07719 | 0.815002 | 1.16E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene07719 | 0.833313 | 5.73E-56 | -1.69E-46 |
| MS.gene057705 | MS.gene07719 | 0.801401 | 9.16E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene07719 | 0.806932 | 6.47E-50 | -1.69E-46 |
| MS.gene058084 | MS.gene07719 | 0.836466 | 9.21E-57 | -1.69E-46 |
| MS.gene058906 | MS.gene07719 | 0.813222 | 2.86E-51 | -1.69E-46 |
| MS.gene058908 | MS.gene07719 | 0.811615 | 6.41E-51 | -1.69E-46 |
| MS.gene058911 | MS.gene07719 | 0.816468 | 5.44E-52 | -1.69E-46 |
| MS.gene059227 | MS.gene07719 | 0.801614 | 8.29E-49 | -1.69E-46 |
| MS.gene05953 | MS.gene07719 | 0.80325 | 3.81E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene07719 | 0.835577 | 1.55E-56 | -1.69E-46 |
| MS.gene059625 | MS.gene07719 | 0.835964 | 1.23E-56 | -1.69E-46 |
| MS.gene059935 | MS.gene07719 | 0.804032 | 2.62E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene07719 | 0.90283 | 6.49E-79 | -1.69E-46 |
| MS.gene060101 | MS.gene07719 | 0.800162 | 1.64E-48 | -1.69E-46 |
| MS.gene06011 | MS.gene07719 | 0.810918 | 9.08E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene07719 | 0.801344 | 9.41E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene07719 | 0.887189 | 1.77E-72 | -1.69E-46 |
| MS.gene060586 | MS.gene07719 | 0.805757 | 1.14E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene07719 | 0.805182 | 1.51E-49 | -1.69E-46 |
| MS.gene060830 | MS.gene07719 | 0.80732 | 5.35E-50 | -1.69E-46 |
| MS.gene060917 | MS.gene07719 | 0.832462 | 9.33E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07719.t1 | MTR_2g038250 | 97.951 | 244 | 5 | 0 | 1 | 244 | 1 | 244 | 6.66e-177 | 486 |
| MS.gene07719.t1 | MTR_1g022385 | 97.541 | 244 | 6 | 0 | 1 | 244 | 32 | 275 | 2.11e-176 | 486 |
| MS.gene07719.t1 | MTR_4g008160 | 86.307 | 241 | 33 | 0 | 4 | 244 | 3 | 243 | 8.32e-158 | 437 |
| MS.gene07719.t1 | MTR_7g059170 | 45.344 | 247 | 131 | 2 | 1 | 244 | 1 | 246 | 2.22e-72 | 221 |
| MS.gene07719.t1 | MTR_1g022375 | 66.667 | 102 | 34 | 0 | 133 | 234 | 55 | 156 | 7.03e-43 | 143 |
| MS.gene07719.t1 | MTR_1g108785 | 40.179 | 112 | 13 | 3 | 126 | 236 | 1 | 59 | 1.83e-15 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07719.t1 | AT3G13580 | 81.967 | 244 | 44 | 0 | 1 | 244 | 1 | 244 | 2.04e-152 | 424 |
| MS.gene07719.t1 | AT3G13580 | 81.967 | 244 | 44 | 0 | 1 | 244 | 1 | 244 | 2.04e-152 | 424 |
| MS.gene07719.t1 | AT3G13580 | 81.967 | 244 | 44 | 0 | 1 | 244 | 1 | 244 | 2.04e-152 | 424 |
| MS.gene07719.t1 | AT3G13580 | 81.967 | 244 | 44 | 0 | 1 | 244 | 1 | 244 | 2.04e-152 | 424 |
| MS.gene07719.t1 | AT3G13580 | 81.967 | 244 | 44 | 0 | 1 | 244 | 1 | 244 | 2.04e-152 | 424 |
| MS.gene07719.t1 | AT3G13580 | 81.967 | 244 | 44 | 0 | 1 | 244 | 1 | 244 | 2.04e-152 | 424 |
| MS.gene07719.t1 | AT3G13580 | 81.967 | 244 | 44 | 0 | 1 | 244 | 1 | 244 | 2.04e-152 | 424 |
| MS.gene07719.t1 | AT3G13580 | 81.967 | 244 | 44 | 0 | 1 | 244 | 1 | 244 | 2.04e-152 | 424 |
| MS.gene07719.t1 | AT3G13580 | 81.967 | 244 | 44 | 0 | 1 | 244 | 1 | 244 | 2.04e-152 | 424 |
| MS.gene07719.t1 | AT2G01250 | 84.167 | 240 | 38 | 0 | 5 | 244 | 3 | 242 | 7.38e-151 | 420 |
| MS.gene07719.t1 | AT2G44120 | 82.917 | 240 | 41 | 0 | 5 | 244 | 3 | 242 | 3.24e-149 | 416 |
| MS.gene07719.t1 | AT2G44120 | 82.917 | 240 | 41 | 0 | 5 | 244 | 8 | 247 | 3.63e-149 | 416 |
| MS.gene07719.t1 | AT2G01250 | 79.429 | 175 | 36 | 0 | 5 | 179 | 3 | 177 | 6.51e-96 | 278 |
| MS.gene07719.t1 | AT1G80750 | 43.320 | 247 | 137 | 2 | 1 | 244 | 1 | 247 | 1.09e-62 | 196 |
Find 61 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAAAATCTTCCTTGATTT+TGG | 0.006132 | 2.4:-51266092 | None:intergenic |
| TTCTCTGACACTCTTCAAAT+TGG | 0.182246 | 2.4:-51267184 | None:intergenic |
| AATATTCAATTGCAGGTTCT+TGG | 0.263781 | 2.4:+51267559 | MS.gene07719:intron |
| TGTTTCTTCAAAACAGATTC+AGG | 0.264633 | 2.4:-51265497 | None:intergenic |
| ACTCATTAGAAGGATGAATT+AGG | 0.270598 | 2.4:+51267768 | MS.gene07719:CDS |
| CTGAAACCAGGAAGCTTATC+TGG | 0.274950 | 2.4:+51265585 | MS.gene07719:CDS |
| TTTCAAGCTCAAAGCTCCTT+TGG | 0.284641 | 2.4:+51267672 | MS.gene07719:CDS |
| TTCAAGCTCAAAGCTCCTTT+GGG | 0.329811 | 2.4:+51267673 | MS.gene07719:CDS |
| TTGATCTACAAGCGTGGTTA+TGG | 0.334090 | 2.4:+51267207 | MS.gene07719:CDS |
| TTCAGCAAAAGGAGTTGATT+AGG | 0.371855 | 2.4:+51265737 | MS.gene07719:intron |
| TCTACTCCAGATAAGCTTCC+TGG | 0.375959 | 2.4:-51265591 | None:intergenic |
| CGGTTGCTTTGTTCACTTTG+AGG | 0.382967 | 2.4:-51267026 | None:intergenic |
| AAGGTGGTGATGCTGGTAAC+AGG | 0.401808 | 2.4:+51267728 | MS.gene07719:CDS |
| ATATTCAATTGCAGGTTCTT+GGG | 0.423006 | 2.4:+51267560 | MS.gene07719:intron |
| GTATTCCTTAGCGTACTGTT+TGG | 0.423633 | 2.4:-51265615 | None:intergenic |
| ATGGGCATTGGTGAAGAAAC+AGG | 0.439903 | 2.4:+51265535 | MS.gene07719:CDS |
| ACATCAATGAACTCATTAGA+AGG | 0.442744 | 2.4:+51267758 | MS.gene07719:CDS |
| GCAGCTTCTGCGATTGAGAC+AGG | 0.461345 | 2.4:+51266112 | MS.gene07719:CDS |
| GTTGAGCCATATGTCACCTA+TGG | 0.461514 | 2.4:+51267066 | MS.gene07719:CDS |
| TCTCTGACACTCTTCAAATT+GGG | 0.464078 | 2.4:-51267183 | None:intergenic |
| GAAGCGTGAAGCTAAGCTTA+AGG | 0.464202 | 2.4:+51265762 | MS.gene07719:CDS |
| AAGCGTGAAGCTAAGCTTAA+GGG | 0.467088 | 2.4:+51265763 | MS.gene07719:CDS |
| ATGAACAAAAGCTTAGCTTC+AGG | 0.472114 | 2.4:-51265802 | None:intergenic |
| GCATACCCATAGGTGACATA+TGG | 0.482193 | 2.4:-51267072 | None:intergenic |
| AGATAACTCTATCATCGAAC+AGG | 0.483740 | 2.4:+51267260 | MS.gene07719:CDS |
| AAGAGAAATCACTATGTTGA+AGG | 0.489111 | 2.4:+51267709 | MS.gene07719:CDS |
| AGAAGAAGAGAGCTGAAACC+AGG | 0.494410 | 2.4:+51265573 | MS.gene07719:CDS |
| ACAGAAAAGGAATGTGGAAT+GGG | 0.495624 | 2.4:+51265517 | MS.gene07719:CDS |
| CAACCGTGAATATGCTCCAC+AGG | 0.496550 | 2.4:+51267043 | MS.gene07719:CDS |
| TAATTTCAGTATCAATGCAA+TGG | 0.497010 | 2.4:+51266067 | MS.gene07719:intron |
| AAAGGAGCTTTGAGCTTGAA+AGG | 0.504831 | 2.4:-51267670 | None:intergenic |
| GAGAGGCAAACAACTTCCTA+TGG | 0.504947 | 2.4:+51267647 | MS.gene07719:CDS |
| AACCCTGTGGAGCATATTCA+CGG | 0.507599 | 2.4:-51267046 | None:intergenic |
| ATGCAATGGACCCAAAATCA+AGG | 0.518414 | 2.4:+51266081 | MS.gene07719:CDS |
| AACAGAAAAGGAATGTGGAA+TGG | 0.519127 | 2.4:+51265516 | MS.gene07719:CDS |
| TGAAGTGAGGTCCAACAGTA+AGG | 0.528046 | 2.4:-51267624 | None:intergenic |
| TATGTTGAAGGTGGTGATGC+TGG | 0.533299 | 2.4:+51267721 | MS.gene07719:CDS |
| GAAGAAACAGAAAAGGAATG+TGG | 0.539226 | 2.4:+51265511 | MS.gene07719:CDS |
| ATTCATGAGATCCTTACTGT+TGG | 0.542331 | 2.4:+51267613 | MS.gene07719:CDS |
| GTGGTTATGGAAAGGTTGAT+AGG | 0.547437 | 2.4:+51267220 | MS.gene07719:CDS |
| TTGCAGGTTCTTGGGAAACA+TGG | 0.547799 | 2.4:+51267568 | MS.gene07719:intron |
| TTCTTCTTCATGCCACCCAA+AGG | 0.554983 | 2.4:-51267688 | None:intergenic |
| CTTTGAGCTTGAAAGGCCAT+AGG | 0.568033 | 2.4:-51267663 | None:intergenic |
| TTGTTCATTATCAGGATCAG+AGG | 0.568101 | 2.4:+51265817 | MS.gene07719:CDS |
| CGCTAAGGAATACGATGACT+CGG | 0.569371 | 2.4:+51265625 | MS.gene07719:CDS |
| AAGCTCAAAGCTCCTTTGGG+TGG | 0.570830 | 2.4:+51267676 | MS.gene07719:CDS |
| TTGTTTGCCTCTCTGAAGTG+AGG | 0.573961 | 2.4:-51267637 | None:intergenic |
| CAAAACAGATTCAGGAACAA+CGG | 0.575093 | 2.4:-51265489 | None:intergenic |
| AAGGAATGTGGAATGGGCAT+TGG | 0.575475 | 2.4:+51265523 | MS.gene07719:CDS |
| TGTTCATTATCAGGATCAGA+GGG | 0.584717 | 2.4:+51265818 | MS.gene07719:CDS |
| TTGAGCCATATGTCACCTAT+GGG | 0.595042 | 2.4:+51267067 | MS.gene07719:CDS |
| CTACAAGCGTGGTTATGGAA+AGG | 0.617075 | 2.4:+51267212 | MS.gene07719:CDS |
| TAGAGCCAAACAGTACGCTA+AGG | 0.631717 | 2.4:+51265610 | MS.gene07719:CDS |
| CGTGAAGCTAAGCTTAAGGG+TGG | 0.634387 | 2.4:+51265766 | MS.gene07719:CDS |
| AGAAATCACTATGTTGAAGG+TGG | 0.637998 | 2.4:+51267712 | MS.gene07719:CDS |
| AGGTGGTGATGCTGGTAACA+GGG | 0.651466 | 2.4:+51267729 | MS.gene07719:CDS |
| TGACATATGGCTCAACCCTG+TGG | 0.662121 | 2.4:-51267059 | None:intergenic |
| AACCGTGAATATGCTCCACA+GGG | 0.683451 | 2.4:+51267044 | MS.gene07719:CDS |
| AGAGAATTGATCTACAAGCG+TGG | 0.711706 | 2.4:+51267201 | MS.gene07719:CDS |
| TGTTGGACCTCACTTCAGAG+AGG | 0.727556 | 2.4:+51267630 | MS.gene07719:CDS |
| TGGTGATGCTGGTAACAGGG+AGG | 0.759776 | 2.4:+51267732 | MS.gene07719:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAAGAGAAATACT+AGG | - | chr2.4:51266889-51266908 | None:intergenic | 15.0% |
| !! | ATTCTGATTATAACTTTAAA+CGG | - | chr2.4:51266241-51266260 | None:intergenic | 15.0% |
| !!! | AAAGGAAAAAAAAGTTTTTT+TGG | - | chr2.4:51266563-51266582 | None:intergenic | 15.0% |
| !!! | TAGTATTTCTCTTTAATTTT+TGG | + | chr2.4:51266888-51266907 | MS.gene07719:intron | 15.0% |
| !!! | TATATAATTTTGTTCTGTTT+TGG | + | chr2.4:51265928-51265947 | MS.gene07719:intron | 15.0% |
| !!! | TTTTTTTTAGTTTAGAGATA+AGG | + | chr2.4:51266842-51266861 | MS.gene07719:intron | 15.0% |
| !! | ATCTTCAATAGTTAAGTAAA+AGG | - | chr2.4:51266742-51266761 | None:intergenic | 20.0% |
| !! | GCAAAATAGAAAAAAATAAC+TGG | - | chr2.4:51267530-51267549 | None:intergenic | 20.0% |
| !! | TGTATTAATAATTCAGATAG+AGG | - | chr2.4:51266512-51266531 | None:intergenic | 20.0% |
| !!! | AGATTCTAACTTTGAAAATT+TGG | - | chr2.4:51267395-51267414 | None:intergenic | 20.0% |
| !!! | GATTCTAACTTTGAAAATTT+GGG | - | chr2.4:51267394-51267413 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTTTGTATTGTTT+AGG | + | chr2.4:51266575-51266594 | MS.gene07719:intron | 20.0% |
| ! | AACTCATTATAACTCTGTAT+GGG | + | chr2.4:51267126-51267145 | MS.gene07719:intron | 25.0% |
| ! | AAGGGATCAATAGTTATTAT+AGG | + | chr2.4:51266367-51266386 | MS.gene07719:intron | 25.0% |
| ! | ACATGAAAATAACCAATTGT+TGG | - | chr2.4:51266454-51266473 | None:intergenic | 25.0% |
| ! | ATAATTGAGCTTTCATCTTA+TGG | + | chr2.4:51266418-51266437 | MS.gene07719:intron | 25.0% |
| ! | TAAAATACAAAGTCAGAATG+AGG | - | chr2.4:51267371-51267390 | None:intergenic | 25.0% |
| ! | TAACTCATTATAACTCTGTA+TGG | + | chr2.4:51267125-51267144 | MS.gene07719:intron | 25.0% |
| ! | TAAGTAAAAGGTTATCATAC+AGG | - | chr2.4:51266730-51266749 | None:intergenic | 25.0% |
| ! | TAATTTCAGTATCAATGCAA+TGG | + | chr2.4:51266067-51266086 | MS.gene07719:intron | 25.0% |
| !! | GCTTATTCTTCTATTTGTTT+TGG | + | chr2.4:51266980-51266999 | MS.gene07719:intron | 25.0% |
| AAAATTGACAATGACAAGGA+TGG | - | chr2.4:51266806-51266825 | None:intergenic | 30.0% | |
| AAGAGAAATCACTATGTTGA+AGG | + | chr2.4:51267709-51267728 | MS.gene07719:CDS | 30.0% | |
| AATATTCAATTGCAGGTTCT+TGG | + | chr2.4:51267559-51267578 | MS.gene07719:intron | 30.0% | |
| AATTTGTGTGTTTCAGCAAA+AGG | + | chr2.4:51265726-51265745 | MS.gene07719:intron | 30.0% | |
| ACATCAATGAACTCATTAGA+AGG | + | chr2.4:51267758-51267777 | MS.gene07719:CDS | 30.0% | |
| ACTAAACCAGTTGGTTATAA+TGG | - | chr2.4:51266780-51266799 | None:intergenic | 30.0% | |
| ACTATTGATCCCTTAATTGA+AGG | - | chr2.4:51266361-51266380 | None:intergenic | 30.0% | |
| ATATTCAATTGCAGGTTCTT+GGG | + | chr2.4:51267560-51267579 | MS.gene07719:intron | 30.0% | |
| CAGCCTAAACAATACAAAAA+AGG | - | chr2.4:51266581-51266600 | None:intergenic | 30.0% | |
| CTAAACCAGTTGGTTATAAT+GGG | - | chr2.4:51266779-51266798 | None:intergenic | 30.0% | |
| CTAATTATTTGATACTGAGC+AGG | + | chr2.4:51266699-51266718 | MS.gene07719:intron | 30.0% | |
| CTGACATAATATTCAATTGC+AGG | + | chr2.4:51267552-51267571 | MS.gene07719:intron | 30.0% | |
| GAATAAAATGTATCCTGTGT+GGG | + | chr2.4:51265994-51266013 | MS.gene07719:intron | 30.0% | |
| GCTGTTCATCTATATAAGAA+TGG | + | chr2.4:51266597-51266616 | MS.gene07719:intron | 30.0% | |
| TCAGAAAATTGACAATGACA+AGG | - | chr2.4:51266810-51266829 | None:intergenic | 30.0% | |
| TGAATAAAATGTATCCTGTG+TGG | + | chr2.4:51265993-51266012 | MS.gene07719:intron | 30.0% | |
| TGTTTCTTCAAAACAGATTC+AGG | - | chr2.4:51265500-51265519 | None:intergenic | 30.0% | |
| ! | CTAAGCTTTTGTTCATTATC+AGG | + | chr2.4:51265809-51265828 | MS.gene07719:CDS | 30.0% |
| ! | GCAAAATCTTCCTTGATTTT+GGG | - | chr2.4:51266094-51266113 | None:intergenic | 30.0% |
| ! | TAATTTTGCGGTGATTATGT+TGG | - | chr2.4:51266487-51266506 | None:intergenic | 30.0% |
| ! | TGCAAAATCTTCCTTGATTT+TGG | - | chr2.4:51266095-51266114 | None:intergenic | 30.0% |
| ! | TTCAAAGTGCCTTCAATTAA+GGG | + | chr2.4:51266349-51266368 | MS.gene07719:intron | 30.0% |
| ! | TTTAGTTTAGAGATAAGGTG+TGG | + | chr2.4:51266847-51266866 | MS.gene07719:intron | 30.0% |
| ! | TTTCAAAGTGCCTTCAATTA+AGG | + | chr2.4:51266348-51266367 | MS.gene07719:intron | 30.0% |
| !! | GGTGCTATTATTATTGTTGA+AGG | + | chr2.4:51267496-51267515 | MS.gene07719:intron | 30.0% |
| !!! | CAATTGGTTTTGTTCTTGAT+GGG | + | chr2.4:51266160-51266179 | MS.gene07719:intron | 30.0% |
| !!! | CTGTTTTGAAGAAACAGAAA+AGG | + | chr2.4:51265504-51265523 | MS.gene07719:CDS | 30.0% |
| !!! | CTGTTTTGGAAAAATGATAG+AGG | + | chr2.4:51265942-51265961 | MS.gene07719:intron | 30.0% |
| !!! | TCTCTTTAATTTTTGGCTTC+TGG | + | chr2.4:51266895-51266914 | MS.gene07719:intron | 30.0% |
| AACAGAAAAGGAATGTGGAA+TGG | + | chr2.4:51265516-51265535 | MS.gene07719:CDS | 35.0% | |
| AATAATAGCACCACCATACA+CGG | - | chr2.4:51267488-51267507 | None:intergenic | 35.0% | |
| ACAGAAAAGGAATGTGGAAT+GGG | + | chr2.4:51265517-51265536 | MS.gene07719:CDS | 35.0% | |
| ACAGGTAAATCAGATTGGAT+TGG | + | chr2.4:51266130-51266149 | MS.gene07719:intron | 35.0% | |
| AGAAATCACTATGTTGAAGG+TGG | + | chr2.4:51267712-51267731 | MS.gene07719:CDS | 35.0% | |
| AGATAACTCTATCATCGAAC+AGG | + | chr2.4:51267260-51267279 | MS.gene07719:CDS | 35.0% | |
| ATACTCGTATCTTCTAGACT+CGG | + | chr2.4:51266939-51266958 | MS.gene07719:intron | 35.0% | |
| ATGAACAAAAGCTTAGCTTC+AGG | - | chr2.4:51265805-51265824 | None:intergenic | 35.0% | |
| ATTCACCCATTATAACCAAC+TGG | + | chr2.4:51266771-51266790 | MS.gene07719:intron | 35.0% | |
| ATTCATGAGATCCTTACTGT+TGG | + | chr2.4:51267613-51267632 | MS.gene07719:CDS | 35.0% | |
| CAAAACAGATTCAGGAACAA+CGG | - | chr2.4:51265492-51265511 | None:intergenic | 35.0% | |
| CAAATAAGAATAACCCACAC+AGG | - | chr2.4:51266010-51266029 | None:intergenic | 35.0% | |
| GAAGAAACAGAAAAGGAATG+TGG | + | chr2.4:51265511-51265530 | MS.gene07719:CDS | 35.0% | |
| GATTGCACTTTGCAATTGTT+GGG | + | chr2.4:51266311-51266330 | MS.gene07719:intron | 35.0% | |
| TCTCTGACACTCTTCAAATT+GGG | - | chr2.4:51267186-51267205 | None:intergenic | 35.0% | |
| TGATTGCACTTTGCAATTGT+TGG | + | chr2.4:51266310-51266329 | MS.gene07719:intron | 35.0% | |
| TGTGTAATCGAATGAAAGCA+GGG | - | chr2.4:51267309-51267328 | None:intergenic | 35.0% | |
| TGTTCATTATCAGGATCAGA+GGG | + | chr2.4:51265818-51265837 | MS.gene07719:CDS | 35.0% | |
| TTCTCTGACACTCTTCAAAT+TGG | - | chr2.4:51267187-51267206 | None:intergenic | 35.0% | |
| TTGAGACAGGTAAATCAGAT+TGG | + | chr2.4:51266125-51266144 | MS.gene07719:intron | 35.0% | |
| TTGTTCATTATCAGGATCAG+AGG | + | chr2.4:51265817-51265836 | MS.gene07719:CDS | 35.0% | |
| ! | CAGATAGAGGAGTAATTTTG+CGG | - | chr2.4:51266499-51266518 | None:intergenic | 35.0% |
| ! | TTAGTTGATGTATTTGTCGC+TGG | + | chr2.4:51266204-51266223 | MS.gene07719:intron | 35.0% |
| ! | TTCAGCAAAAGGAGTTGATT+AGG | + | chr2.4:51265737-51265756 | MS.gene07719:intron | 35.0% |
| !! | TTGGATTGGTTTGTTGCAAT+TGG | + | chr2.4:51266144-51266163 | MS.gene07719:intron | 35.0% |
| !! | TTTTGTTCTTGATGGGTGTT+TGG | + | chr2.4:51266167-51266186 | MS.gene07719:intron | 35.0% |
| !!! | GCAATTGGTTTTGTTCTTGA+TGG | + | chr2.4:51266159-51266178 | MS.gene07719:intron | 35.0% |
| AAGCGTGAAGCTAAGCTTAA+GGG | + | chr2.4:51265763-51265782 | MS.gene07719:CDS | 40.0% | |
| AATGAGGAGAGATCCTATCT+AGG | - | chr2.4:51267355-51267374 | None:intergenic | 40.0% | |
| AGAGAATTGATCTACAAGCG+TGG | + | chr2.4:51267201-51267220 | MS.gene07719:CDS | 40.0% | |
| ATAATAGCACCACCATACAC+GGG | - | chr2.4:51267487-51267506 | None:intergenic | 40.0% | |
| ATGCAATGGACCCAAAATCA+AGG | + | chr2.4:51266081-51266100 | MS.gene07719:CDS | 40.0% | |
| CTGTGTAATCGAATGAAAGC+AGG | - | chr2.4:51267310-51267329 | None:intergenic | 40.0% | |
| GTATTCCTTAGCGTACTGTT+TGG | - | chr2.4:51265618-51265637 | None:intergenic | 40.0% | |
| TCGGTGCAATTTATCAGTGT+AGG | + | chr2.4:51266958-51266977 | MS.gene07719:intron | 40.0% | |
| TTAGACAAAGTCACGCAATC+TGG | - | chr2.4:51267444-51267463 | None:intergenic | 40.0% | |
| TTCAAGCTCAAAGCTCCTTT+GGG | + | chr2.4:51267673-51267692 | MS.gene07719:CDS | 40.0% | |
| TTGAGATTCTGCATACCCAT+AGG | - | chr2.4:51267085-51267104 | None:intergenic | 40.0% | |
| TTGAGCCATATGTCACCTAT+GGG | + | chr2.4:51267067-51267086 | MS.gene07719:CDS | 40.0% | |
| TTGATCTACAAGCGTGGTTA+TGG | + | chr2.4:51267207-51267226 | MS.gene07719:CDS | 40.0% | |
| TTTCAAGCTCAAAGCTCCTT+TGG | + | chr2.4:51267672-51267691 | MS.gene07719:CDS | 40.0% | |
| ! | GTGGTTATGGAAAGGTTGAT+AGG | + | chr2.4:51267220-51267239 | MS.gene07719:CDS | 40.0% |
| !! | AAAGGAGCTTTGAGCTTGAA+AGG | - | chr2.4:51267673-51267692 | None:intergenic | 40.0% |
| !! | TTTTGGCTGCAGATCTTCAA+TGG | + | chr2.4:51266997-51267016 | MS.gene07719:intron | 40.0% |
| AACCCTGTGGAGCATATTCA+CGG | - | chr2.4:51267049-51267068 | None:intergenic | 45.0% | |
| AACCGTGAATATGCTCCACA+GGG | + | chr2.4:51267044-51267063 | MS.gene07719:CDS | 45.0% | |
| AAGGAATGTGGAATGGGCAT+TGG | + | chr2.4:51265523-51265542 | MS.gene07719:CDS | 45.0% | |
| AGAAGAAGAGAGCTGAAACC+AGG | + | chr2.4:51265573-51265592 | MS.gene07719:CDS | 45.0% | |
| AGGAGAGATCCTATCTAGGT+CGG | - | chr2.4:51267351-51267370 | None:intergenic | 45.0% | |
| CGCTAAGGAATACGATGACT+CGG | + | chr2.4:51265625-51265644 | MS.gene07719:CDS | 45.0% | |
| CTACAAGCGTGGTTATGGAA+AGG | + | chr2.4:51267212-51267231 | MS.gene07719:CDS | 45.0% | |
| CTGAAACCAGGAAGCTTATC+TGG | + | chr2.4:51265585-51265604 | MS.gene07719:CDS | 45.0% | |
| CTTTGAGCTTGAAAGGCCAT+AGG | - | chr2.4:51267666-51267685 | None:intergenic | 45.0% | |
| CTTTGCAATTGTTGGGTGCT+TGG | + | chr2.4:51266318-51266337 | MS.gene07719:intron | 45.0% | |
| GAAGCGTGAAGCTAAGCTTA+AGG | + | chr2.4:51265762-51265781 | MS.gene07719:CDS | 45.0% | |
| GAGAGGCAAACAACTTCCTA+TGG | + | chr2.4:51267647-51267666 | MS.gene07719:CDS | 45.0% | |
| GCATACCCATAGGTGACATA+TGG | - | chr2.4:51267075-51267094 | None:intergenic | 45.0% | |
| GGATGGAGAACTAAACCAGT+TGG | - | chr2.4:51266789-51266808 | None:intergenic | 45.0% | |
| GGCTAAGTGTCTCCAACAAT+TGG | + | chr2.4:51266439-51266458 | MS.gene07719:intron | 45.0% | |
| GTTGAGCCATATGTCACCTA+TGG | + | chr2.4:51267066-51267085 | MS.gene07719:CDS | 45.0% | |
| TAGAGCCAAACAGTACGCTA+AGG | + | chr2.4:51265610-51265629 | MS.gene07719:CDS | 45.0% | |
| TCTACTCCAGATAAGCTTCC+TGG | - | chr2.4:51265594-51265613 | None:intergenic | 45.0% | |
| TCTGGACTGTCTCATCAAGT+TGG | - | chr2.4:51267426-51267445 | None:intergenic | 45.0% | |
| TGAAGTGAGGTCCAACAGTA+AGG | - | chr2.4:51267627-51267646 | None:intergenic | 45.0% | |
| TTCTTCTTCATGCCACCCAA+AGG | - | chr2.4:51267691-51267710 | None:intergenic | 45.0% | |
| TTGCAGGTTCTTGGGAAACA+TGG | + | chr2.4:51267568-51267587 | MS.gene07719:intron | 45.0% | |
| TTTGCGGTGATTATGTTGGC+AGG | - | chr2.4:51266483-51266502 | None:intergenic | 45.0% | |
| ! | CGGTTGCTTTGTTCACTTTG+AGG | - | chr2.4:51267029-51267048 | None:intergenic | 45.0% |
| ! | TATGTTGAAGGTGGTGATGC+TGG | + | chr2.4:51267721-51267740 | MS.gene07719:CDS | 45.0% |
| !! | ATGGGCATTGGTGAAGAAAC+AGG | + | chr2.4:51265535-51265554 | MS.gene07719:CDS | 45.0% |
| !! | TTGTTTGCCTCTCTGAAGTG+AGG | - | chr2.4:51267640-51267659 | None:intergenic | 45.0% |
| !!! | ATAAAATATTTTAATACAAT+GGG | + | chr2.4:51266641-51266660 | MS.gene07719:intron | 5.0% |
| !!! | TAAAAAAATATGTTTTATTT+TGG | - | chr2.4:51265910-51265929 | None:intergenic | 5.0% |
| !!! | TATAAAATATTTTAATACAA+TGG | + | chr2.4:51266640-51266659 | MS.gene07719:intron | 5.0% |
| AAGCTCAAAGCTCCTTTGGG+TGG | + | chr2.4:51267676-51267695 | MS.gene07719:CDS | 50.0% | |
| CAACCGTGAATATGCTCCAC+AGG | + | chr2.4:51267043-51267062 | MS.gene07719:CDS | 50.0% | |
| CGTGAAGCTAAGCTTAAGGG+TGG | + | chr2.4:51265766-51265785 | MS.gene07719:CDS | 50.0% | |
| CTTGACCTATGTCCCGTGTA+TGG | + | chr2.4:51267472-51267491 | MS.gene07719:intron | 50.0% | |
| GGAGAGATCCTATCTAGGTC+GGG | - | chr2.4:51267350-51267369 | None:intergenic | 50.0% | |
| TGAACTGTCCCGACCTAGAT+AGG | + | chr2.4:51267339-51267358 | MS.gene07719:intron | 50.0% | |
| TGACATATGGCTCAACCCTG+TGG | - | chr2.4:51267062-51267081 | None:intergenic | 50.0% | |
| TGTTGGACCTCACTTCAGAG+AGG | + | chr2.4:51267630-51267649 | MS.gene07719:CDS | 50.0% | |
| ! | AAGGTGGTGATGCTGGTAAC+AGG | + | chr2.4:51267728-51267747 | MS.gene07719:CDS | 50.0% |
| ! | AGGTGGTGATGCTGGTAACA+GGG | + | chr2.4:51267729-51267748 | MS.gene07719:CDS | 50.0% |
| CACCACCATACACGGGACAT+AGG | - | chr2.4:51267480-51267499 | None:intergenic | 55.0% | |
| GACCTATGTCCCGTGTATGG+TGG | + | chr2.4:51267475-51267494 | MS.gene07719:intron | 55.0% | |
| GCAGCTTCTGCGATTGAGAC+AGG | + | chr2.4:51266112-51266131 | MS.gene07719:CDS | 55.0% | |
| ! | TGGTGATGCTGGTAACAGGG+AGG | + | chr2.4:51267732-51267751 | MS.gene07719:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 51265467 | 51267789 | 51265467 | ID=MS.gene07719 |
| chr2.4 | mRNA | 51265467 | 51267789 | 51265467 | ID=MS.gene07719.t1;Parent=MS.gene07719 |
| chr2.4 | exon | 51265467 | 51265646 | 51265467 | ID=MS.gene07719.t1.exon1;Parent=MS.gene07719.t1 |
| chr2.4 | CDS | 51265467 | 51265646 | 51265467 | ID=cds.MS.gene07719.t1;Parent=MS.gene07719.t1 |
| chr2.4 | exon | 51265742 | 51265839 | 51265742 | ID=MS.gene07719.t1.exon2;Parent=MS.gene07719.t1 |
| chr2.4 | CDS | 51265742 | 51265839 | 51265742 | ID=cds.MS.gene07719.t1;Parent=MS.gene07719.t1 |
| chr2.4 | exon | 51266076 | 51266133 | 51266076 | ID=MS.gene07719.t1.exon3;Parent=MS.gene07719.t1 |
| chr2.4 | CDS | 51266076 | 51266133 | 51266076 | ID=cds.MS.gene07719.t1;Parent=MS.gene07719.t1 |
| chr2.4 | exon | 51267009 | 51267088 | 51267009 | ID=MS.gene07719.t1.exon4;Parent=MS.gene07719.t1 |
| chr2.4 | CDS | 51267009 | 51267088 | 51267009 | ID=cds.MS.gene07719.t1;Parent=MS.gene07719.t1 |
| chr2.4 | exon | 51267179 | 51267281 | 51267179 | ID=MS.gene07719.t1.exon5;Parent=MS.gene07719.t1 |
| chr2.4 | CDS | 51267179 | 51267281 | 51267179 | ID=cds.MS.gene07719.t1;Parent=MS.gene07719.t1 |
| chr2.4 | exon | 51267574 | 51267789 | 51267574 | ID=MS.gene07719.t1.exon6;Parent=MS.gene07719.t1 |
| chr2.4 | CDS | 51267574 | 51267789 | 51267574 | ID=cds.MS.gene07719.t1;Parent=MS.gene07719.t1 |
| Gene Sequence |
| Protein sequence |
