AlfalfaGEDB | MS.gene07147

M. sativa cultivar XinJiangDaYe / MS.gene07147

KEGG: -
GO: -
PFAM: PF13920.9 PF20235.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07147.t1	XP_013469244.1	96.6	741	25	0	1	741	1	741	0.00E+00	1156.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07147.t1	Q9ZVT8	32.3	803	446	18	21	737	29	819	6.2e-76	287.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07147.t1	G7I2V7	96.6	741	25	0	1	741	26	766	0.0e+00	1156.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene07147	0.819294	1.25E-52	-1.69E-46
MS.gene049159	MS.gene07147	0.833338	5.65E-56	-1.69E-46
MS.gene049190	MS.gene07147	0.82505	5.79E-54	-1.69E-46
MS.gene049255	MS.gene07147	0.845083	5.07E-59	-1.69E-46
MS.gene049341	MS.gene07147	0.854092	1.55E-61	-1.69E-46
MS.gene049404	MS.gene07147	0.807296	5.42E-50	-1.69E-46
MS.gene049501	MS.gene07147	0.824302	8.69E-54	-1.69E-46
MS.gene049824	MS.gene07147	0.806797	6.91E-50	-1.69E-46
MS.gene049850	MS.gene07147	0.81508	1.11E-51	-1.69E-46
MS.gene049979	MS.gene07147	0.817693	2.89E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07147.t1	MTR_1g089740	97.031	741	22	0	1	741	1	741	0.0	1477
MS.gene07147.t1	MTR_1g089740	97.031	741	22	0	1	741	26	766	0.0	1476
MS.gene07147.t1	MTR_2g020870	33.716	783	396	20	71	737	102	877	1.72e-111	358
MS.gene07147.t1	MTR_2g020870	31.516	587	312	17	71	568	102	687	1.50e-63	227
MS.gene07147.t1	MTR_1g012335	66.272	169	18	2	125	293	1	130	1.74e-55	190
MS.gene07147.t1	MTR_4g098560	26.884	398	269	6	357	733	334	730	1.47e-30	129
MS.gene07147.t1	MTR_4g098560	32.418	182	80	6	52	211	64	224	1.53e-14	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07147.t1	AT1G03365	36.307	807	408	21	21	737	29	819	4.57e-128	400
MS.gene07147.t1	AT1G03365	36.307	807	408	21	21	737	29	819	4.57e-128	400
MS.gene07147.t1	AT4G03000	35.075	804	413	22	21	737	30	811	1.55e-120	381
MS.gene07147.t1	AT4G03000	35.075	804	413	22	21	737	30	811	1.55e-120	381
MS.gene07147.t1	AT4G03000	32.905	623	326	19	21	573	30	630	9.44e-73	249
MS.gene07147.t1	AT4G03000	32.905	623	326	19	21	573	30	630	9.44e-73	249
MS.gene07147.t1	AT4G03000	32.905	623	326	19	21	573	30	630	1.25e-72	251
MS.gene07147.t1	AT4G03000	32.905	623	326	19	21	573	30	630	3.34e-72	249
MS.gene07147.t1	AT2G35330	29.191	346	223	4	406	733	390	731	4.73e-34	139
MS.gene07147.t1	AT2G35330	35.632	174	85	6	56	220	86	241	3.42e-17	86.7

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Find 178 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTTGGTTCTGAACA+AGG	0.506590	1.4:-71116591	MS.gene07147:CDS
AAAGTTAGCTAACTTGCATC+AGG	0.490897	1.4:-71114957	MS.gene07147:CDS
AAATCTGAGACGGTGACGAC+GGG	0.504966	1.4:-71113034	MS.gene07147:CDS
AAATCTTCTAGCCAATACTG+AGG	0.732844	1.4:-71114918	MS.gene07147:intron
AACACACTGAATACTTTGAA+GGG	0.509898	1.4:-71116204	MS.gene07147:CDS
AACAGTAACTGAAGCAATGT+GGG	0.577399	1.4:-71116073	MS.gene07147:CDS
AACTTTCACAAATATCTCCC+AGG	0.600719	1.4:-71115896	MS.gene07147:CDS
AAGAAGGTTGTTGATTTAGG+AGG	0.522918	1.4:-71116309	MS.gene07147:CDS
AAGAGTTTACATCAGTGCTT+AGG	0.388024	1.4:-71115822	MS.gene07147:CDS
AAGGTTCAAAATTACTGTGC+TGG	0.484913	1.4:-71115478	MS.gene07147:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTAAAAACAGTATGCAC+AGG	+	chr1.4:71115716-71115735	None:intergenic	30.0%
AACACACTGAATACTTTGAA+GGG	-	chr1.4:71113246-71113265	MS.gene07147:CDS	30.0%
AAGTAAAAAACAGTATGCAC+AGG	+	chr1.4:71116020-71116039	None:intergenic	30.0%
AATGTTCAGTCTGATATGAT+TGG	-	chr1.4:71113516-71113535	MS.gene07147:intron	30.0%
AGAAAACAAGAAATCTGAGA+CGG	-	chr1.4:71116406-71116425	MS.gene07147:CDS	30.0%
ATATACCATCATTTGTCCTA+TGG	+	chr1.4:71114976-71114995	None:intergenic	30.0%
ATCTGATTGAGCTAAAGTAT+AGG	-	chr1.4:71115654-71115673	MS.gene07147:CDS	30.0%
CAGTTAGTAATTTATCACTC+AGG	-	chr1.4:71115686-71115705	MS.gene07147:CDS	30.0%
GAAGAAATGGATAAAACTGT+TGG	-	chr1.4:71112847-71112866	MS.gene07147:CDS	30.0%
GATTTGTAAATTCATAGGGA+GGG	+	chr1.4:71112966-71112985	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	71112814	71116658	71112814	ID=MS.gene07147
chr1.4	mRNA	71112814	71116658	71112814	ID=MS.gene07147.t1;Parent=MS.gene07147
chr1.4	exon	71114919	71116658	71114919	ID=MS.gene07147.t1.exon1;Parent=MS.gene07147.t1
chr1.4	CDS	71114919	71116658	71114919	ID=cds.MS.gene07147.t1;Parent=MS.gene07147.t1
chr1.4	exon	71112814	71113299	71112814	ID=MS.gene07147.t1.exon2;Parent=MS.gene07147.t1
chr1.4	CDS	71112814	71113299	71112814	ID=cds.MS.gene07147.t1;Parent=MS.gene07147.t1

Gene Sequence

>MS.gene07147

ATGGATGTGATAGACAAGGGTATTATAATGGCCGAAGAAATGGATAAAACTGTTGGTTCTGAACAAGGTTGTAATTACAAGAGAAAATTAGACGATGAGTCTTCTTCAATGGTTACCGAAGATGGTTCCTTAAGTGTGGAGGATGATTTCCCTCCCTATGAATTTACAAATCCGCAAAGCTTCGATTCAGCGGAATTAGGGTTAGGTTGTTGTACAGAAGAACAACATTTGGGTGTGCTCGAGGTTGAAGATTGGAAGGATCCTATGGCAACTCAGCTTGAGGACTTACTGATGAGTAATTTGGAAGCAATTTTTAGTAATGCTATCAAGAAGGTTGTTGATTTAGGAGGCTACAGTCAAGAAATGGCTGAAATGGCCGTTTCAAGGAAGTCCTTGTACACAGAAGGAGACCCTCTCACAAATATTGTCTACAACACACTGAATACTTTGAAGGGGAAAGGTACTGAAACTCCTGCAGACTTTGTATTTCAAAATACAAAGCAGTTACTGCATTATAGTTTGGTAGAGATGCTCGGTGTACTCCGGGAACTAAAACCCTCCTTAACAGTAACTGAAGCAATGTGGGAGTTGCTGGTACATGACTTGAGTATTACACGAGTCATTTCACCAGAAGGTCAACTGAGTGGTGGTGATTCTAGCGAGCAAAGCTCTGACAAGTCTTCTGCTCCCCCATCAAAGTTAAATGTTCAGTCTGATATGATTGGAAGTATGAGTGTGACAACTTTCACAAATATCTCCCAGGAAAGTAAATCCGAATCTAATTCTCAGCTGATGAAGAGCAGAAAACACCATAAAGAGTTTACATCAGTGCTTAGGGAGAAGTTCTTTCATATGAAAGAACCTAAAGCTTGTGGCAAAGCGGGTGTTAAATTAGGAAAGCTTACAAGCGTAAGTGGTTTGATTGTTGAAAAAAAACTCAAGCCACCATCTGAAGTTCCAAATCAGAAAATGAAACGTGGCTCCTCAAATACAAAAGGAGTTAGTATAGCAGGAGTATGCCGTATTTCAACCAATGATGATTCAGCTTTACCCGAAGGAGGTAGCGCTGCAAAATTACCCACAAAGGATGCAACATCTACTTCTCCAACAGTGAAAACAGCCAAATCAAAACCTAAGCCATTCTCCTCTTCCGCTCAAAAGGTTCAAAATTACTGTGCTGGTATTCCCTTTAATGAGGCTTTGGGCAAGTTTATCCCACGGGATGAGAAGGACGAACAAGTTTTGAAATTAGTATCTCGAGCACAAGAATTGCAGGATGAGGTGCAAAGCTGGAATGACTGGGCCAATAAGAAGGTTATGCAGGTATCAGATAAGCTTCGCAAGCTTCAGGCGGAGTCTAAATCTTTGAAAAAAGAAACTGAAATTTATAAAAAAGAAAGAAAATCTTTAGAAGAGAATGCTGAGAAGAGGATCTCTGAAGTGGAGAATGCCATGGAAAATAATCAAAAGCAACTTGAGAGTGCCACTTCTTCCATACTCATTCTGGAGGCAAAGAAGTCCTTGCTAGAGAAAGAGTTGGTGTCTGCTAAGTCGTTGGCTGAAAAGTCAATGGCAAGTTATCAACAAGCACTGGAGAGAGAGCAGATGACTATTCAACAAGCCCAGTCGTGGAAAACGGAGTTGGATTTGCTTCAAGATGAACTTGAGAAAGAGAAGCAAAAGTTAGCTAACTTGCATCAGGAGATAGAAAAGGGGAAAAATCTTCTAGCCAATACTGAGGTATGTGGAATTAAGTATGTATAATAACTAATATGAAGATATATTTGAGTAAAATCTGTGTAGTTTATTCAATAATTTTAATATTAGCCCGTATCTTGAGTACCTACCTACTCTATTATTCTGACGGTCTGACTCGTGCCCCTGGACATGCATAGGCACCTAAAAAAGACACGGCGACTTCAGTTTGACCTTCCGAATAGTCAAATTTTTATTTTTAGATTTACATATACATGGTTGACAATTTTAGCCGTGTACTGCAAACATAGGTGAGATGAGCGGTTAACTCTTGATATCTGAAAGATGTTCCTTCAGTCTCACTGTTAAAAAACAAATCATATATCAACTCAAAATGTTGCTTCTTGTTGCTTCTCAACCAATTAAAATGAATTCAACCAGTGTTTTGCATTCCTTTAGATTTTCCATAGGACAAATGATGGTATATGCATAACTTCACAGTTTAATTTTTTTTATTAGTTTACATATACATGGTTGACAATTTTAGCCGTGTACTGCAAACATAGGTGAGATGAGCGGTTAACTCTTGATATCTGAAAGATGTTCCTTCAGTCTCACTGTTAAAAAACAAATCATATATCAACTCAAAATGTTGCTTCTTGTTGCTTTTCAACCAATTAAAATGAATTCAACCAGTGTTTTGCATTCCTTTAGATTTTCCATAGGACAAATGATGGTATATGCATAACTTCACAGTTTAATTTTTTTGGGGTGCTGGTTTTCTGTTTCTGTTTTTTGTGGAGAGAGCAGTTTTGTTTCGGTGTGGTGCTGGGCCTTTTTCGGTCAGCAGTTTTGCTGTTTTCTGGTCTGCTGCAGTTCCTTAGTTGCTGATTGCTTCTGTGGTTGTGTGTAGTGACTGTTGGAGCTTTGTTGGTTGGTAGTCCAGTGGGTTGCTAGTTCTTTTCTTAGGGGTGGTTTTTTAAGGGGTTTTTGTTCGAGCCGGCGCTTTTGCGGCAACCGATTTCCCCTTGTAATTTTTTTTCTCCACCCAAGCTTATTAGTGTGCCTTGCACGGGCTTGTTGGTTAATAATATTTGGCCGTTTCAAAAAAAAAAAGTTTATGGTTTTATGTGGTAGAAACTAGAATCTGATTGAGCTAAAGTATAGGAACAAGGTACAGTTAGTAATTTATCACTCAGGTCTTCCTGTGCATACTGTTTTTACTTTTGCATTCATATTACACAATTTACTTGTTAAATAATAAGAATTCAAATGATTCAACCAACCATGAGTGTTTAACTCATAGGCTGAAAAAAAAAAAAAAAAAAGAATTCAACCAGTGTTTTGCATTCCTTTAGATTTTCCATAGGACAAATGATGATATATGCATAACTTCACAGTTTAAATTTTTTGATTAGTTTATTGGTTTATAGGTTAGAAACTAGAATCTGATTGAGCTAAAGTATAGGAACAGGGTACAGTGAGTCAATAATTATCACTCAGGTCTTCCTGTGCATACTGTTTTTTACTTTTACATTCATATATTACACAATTTTCTTGTTAAATAATATGATTTCTGTTTTTATGATGGTCAAATTGTTTACAATTGACACTCAAACAGCTTATTATGCTACTTCCTTACTTAAATGGTGAAAACATTACAGGGTAGAGTGAAAAAGGAGAGAGCTAAGACAGAAAAAATCCTCGCACAGGCTGCATACTTTAGAAAAGAAAGAGAACAGTCTGAAGCACTCATGAAAGCTGAGGAGGATGCCGTCAGAAAGAAGGCAGCTAGTCAACTGCAGGAATATGTGGACAGCATGGTAAAGCTAGAGAAGGAGATCGCTGTGCTAAGACTAAAATCTGGTTCCAAAATAAGTACTCCATCTGTGGTGAAAGAAAACAAGAAATCTGAGACGGTGACGACGGGGGGCTCCCAAGACAAACCAGCTGGTGGAAGATTGAAGCGGGAGCATGAGTGTGTCATGTGCCTATCAGAGGAGAGGTCGGTTGTTTTTCTGCCATGTGCGCATCAGGTTTTGTGTCCGAATTGCAATGAGCTCCATGAGAAGCAAGGGATGAAGGAATGCCCTTCATGTAGGACCACCATCGAATTTAGGATTCATGCCAAATTTCTTGGGCAGCAGTAG

Protein sequence

>MS.gene07147.t1

MDVIDKGIIMAEEMDKTVGSEQGCNYKRKLDDESSSMVTEDGSLSVEDDFPPYEFTNPQSFDSAELGLGCCTEEQHLGVLEVEDWKDPMATQLEDLLMSNLEAIFSNAIKKVVDLGGYSQEMAEMAVSRKSLYTEGDPLTNIVYNTLNTLKGKGTETPADFVFQNTKQLLHYSLVEMLGVLRELKPSLTVTEAMWELLVHDLSITRVISPEGQLSGGDSSEQSSDKSSAPPSKLNVQSDMIGSMSVTTFTNISQESKSESNSQLMKSRKHHKEFTSVLREKFFHMKEPKACGKAGVKLGKLTSVSGLIVEKKLKPPSEVPNQKMKRGSSNTKGVSIAGVCRISTNDDSALPEGGSAAKLPTKDATSTSPTVKTAKSKPKPFSSSAQKVQNYCAGIPFNEALGKFIPRDEKDEQVLKLVSRAQELQDEVQSWNDWANKKVMQVSDKLRKLQAESKSLKKETEIYKKERKSLEENAEKRISEVENAMENNQKQLESATSSILILEAKKSLLEKELVSAKSLAEKSMASYQQALEREQMTIQQAQSWKTELDLLQDELEKEKQKLANLHQEIEKGKNLLANTEGRVKKERAKTEKILAQAAYFRKEREQSEALMKAEEDAVRKKAASQLQEYVDSMVKLEKEIAVLRLKSGSKISTPSVVKENKKSETVTTGGSQDKPAGGRLKREHECVMCLSEERSVVFLPCAHQVLCPNCNELHEKQGMKECPSCRTTIEFRIHAKFLGQQ