Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064852.t1 | XP_013462298.1 | 96.9 | 196 | 6 | 0 | 1 | 196 | 20 | 215 | 2.20E-104 | 388.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064852.t1 | Q5QMM3 | 70.1 | 157 | 44 | 3 | 1 | 156 | 30 | 184 | 2.3e-54 | 213.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064852.t1 | A0A072V4R9 | 96.9 | 196 | 6 | 0 | 1 | 196 | 20 | 215 | 1.6e-104 | 388.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064852.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene064852 | 0.807453 | 5.02E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene064852 | 0.83136 | 1.74E-55 | -1.69E-46 |
| MS.gene049711 | MS.gene064852 | 0.817385 | 3.39E-52 | -1.69E-46 |
| MS.gene049824 | MS.gene064852 | 0.810245 | 1.27E-50 | -1.69E-46 |
| MS.gene049825 | MS.gene064852 | 0.802096 | 6.60E-49 | -1.69E-46 |
| MS.gene049873 | MS.gene064852 | 0.829624 | 4.64E-55 | -1.69E-46 |
| MS.gene050026 | MS.gene064852 | 0.810061 | 1.39E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene064852 | 0.83898 | 2.08E-57 | -1.69E-46 |
| MS.gene050561 | MS.gene064852 | 0.834262 | 3.32E-56 | -1.69E-46 |
| MS.gene050562 | MS.gene064852 | 0.832095 | 1.15E-55 | -1.69E-46 |
| MS.gene051247 | MS.gene064852 | 0.815119 | 1.09E-51 | -1.69E-46 |
| MS.gene051279 | MS.gene064852 | 0.847066 | 1.46E-59 | -1.69E-46 |
| MS.gene051720 | MS.gene064852 | 0.813431 | 2.57E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene064852 | 0.880979 | 3.51E-70 | -1.69E-46 |
| MS.gene052488 | MS.gene064852 | 0.80271 | 4.93E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene064852 | 0.810092 | 1.37E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene064852 | 0.823191 | 1.58E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene064852 | 0.832661 | 8.32E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene064852 | 0.848836 | 4.75E-60 | -1.69E-46 |
| MS.gene05423 | MS.gene064852 | 0.804577 | 2.02E-49 | -1.69E-46 |
| MS.gene05433 | MS.gene064852 | 0.801784 | 7.65E-49 | -1.69E-46 |
| MS.gene054576 | MS.gene064852 | 0.805706 | 1.17E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene064852 | 0.802512 | 5.42E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene064852 | 0.826731 | 2.31E-54 | -1.69E-46 |
| MS.gene055580 | MS.gene064852 | -0.808499 | 3.01E-50 | -1.69E-46 |
| MS.gene055586 | MS.gene064852 | 0.815549 | 8.73E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene064852 | 0.80663 | 7.49E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene064852 | 0.836775 | 7.68E-57 | -1.69E-46 |
| MS.gene056366 | MS.gene064852 | 0.821061 | 4.93E-53 | -1.69E-46 |
| MS.gene05686 | MS.gene064852 | 0.821776 | 3.37E-53 | -1.69E-46 |
| MS.gene058037 | MS.gene064852 | 0.803875 | 2.83E-49 | -1.69E-46 |
| MS.gene059015 | MS.gene064852 | 0.82398 | 1.03E-53 | -1.69E-46 |
| MS.gene059084 | MS.gene064852 | 0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene064852 | 0.814866 | 1.24E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064852.t1 | MTR_3g115620 | 96.939 | 196 | 6 | 0 | 1 | 196 | 20 | 215 | 2.13e-145 | 403 |
| MS.gene064852.t1 | MTR_1g115315 | 72.297 | 148 | 37 | 3 | 1 | 148 | 25 | 168 | 3.87e-72 | 219 |
| MS.gene064852.t1 | MTR_1g115315 | 72.297 | 148 | 37 | 3 | 1 | 148 | 25 | 168 | 5.87e-72 | 219 |
| MS.gene064852.t1 | MTR_7g023810 | 47.753 | 178 | 67 | 4 | 1 | 175 | 22 | 176 | 5.30e-45 | 147 |
| MS.gene064852.t1 | MTR_2g015000 | 37.363 | 91 | 56 | 1 | 33 | 122 | 24 | 114 | 2.97e-15 | 73.6 |
| MS.gene064852.t1 | MTR_4g084550 | 44.262 | 61 | 34 | 0 | 63 | 123 | 64 | 124 | 3.25e-14 | 68.2 |
| MS.gene064852.t1 | MTR_7g025010 | 44.444 | 63 | 35 | 0 | 61 | 123 | 45 | 107 | 2.50e-13 | 68.2 |
| MS.gene064852.t1 | MTR_1g019130 | 40.789 | 76 | 45 | 0 | 63 | 138 | 90 | 165 | 3.65e-13 | 65.9 |
| MS.gene064852.t1 | MTR_4g088070 | 36.585 | 82 | 52 | 0 | 61 | 142 | 27 | 108 | 4.60e-13 | 67.0 |
| MS.gene064852.t1 | MTR_1g019130 | 40.789 | 76 | 45 | 0 | 63 | 138 | 90 | 165 | 7.61e-13 | 65.1 |
| MS.gene064852.t1 | MTR_8g107210 | 44.262 | 61 | 34 | 0 | 63 | 123 | 96 | 156 | 2.69e-12 | 64.7 |
| MS.gene064852.t1 | MTR_4g088080 | 45.000 | 60 | 33 | 0 | 61 | 120 | 38 | 97 | 4.95e-12 | 63.9 |
| MS.gene064852.t1 | MTR_4g063735 | 42.623 | 61 | 35 | 0 | 63 | 123 | 25 | 85 | 2.09e-11 | 61.6 |
| MS.gene064852.t1 | MTR_7g060630 | 45.000 | 60 | 33 | 0 | 63 | 122 | 8 | 67 | 5.64e-11 | 59.7 |
| MS.gene064852.t1 | MTR_5g081990 | 38.462 | 65 | 40 | 0 | 63 | 127 | 33 | 97 | 7.15e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064852.t1 | AT4G35550 | 52.703 | 222 | 76 | 4 | 1 | 194 | 38 | 258 | 1.11e-67 | 208 |
| MS.gene064852.t1 | AT1G20700 | 49.457 | 184 | 80 | 4 | 1 | 182 | 31 | 203 | 9.53e-58 | 181 |
| MS.gene064852.t1 | AT1G20700 | 48.603 | 179 | 79 | 4 | 1 | 177 | 31 | 198 | 1.41e-54 | 172 |
| MS.gene064852.t1 | AT1G20700 | 49.275 | 138 | 59 | 2 | 45 | 182 | 15 | 141 | 2.72e-43 | 142 |
| MS.gene064852.t1 | AT1G20710 | 46.774 | 186 | 89 | 5 | 1 | 184 | 15 | 192 | 1.44e-40 | 137 |
| MS.gene064852.t1 | AT5G45980 | 46.774 | 62 | 33 | 0 | 61 | 122 | 53 | 114 | 1.10e-14 | 71.2 |
| MS.gene064852.t1 | AT2G33880 | 45.161 | 62 | 34 | 0 | 61 | 122 | 53 | 114 | 2.57e-14 | 70.9 |
| MS.gene064852.t1 | AT2G33880 | 45.161 | 62 | 34 | 0 | 61 | 122 | 53 | 114 | 2.97e-14 | 70.5 |
| MS.gene064852.t1 | AT1G46480 | 47.541 | 61 | 32 | 0 | 63 | 123 | 90 | 150 | 1.61e-13 | 66.2 |
| MS.gene064852.t1 | AT3G18010 | 40.845 | 71 | 42 | 0 | 63 | 133 | 76 | 146 | 4.02e-13 | 67.0 |
| MS.gene064852.t1 | AT1G46480 | 47.541 | 61 | 32 | 0 | 63 | 123 | 90 | 150 | 5.17e-13 | 65.9 |
| MS.gene064852.t1 | AT3G11260 | 36.458 | 96 | 56 | 2 | 63 | 155 | 24 | 117 | 1.31e-12 | 63.9 |
| MS.gene064852.t1 | AT2G28610 | 46.667 | 60 | 32 | 0 | 63 | 122 | 8 | 67 | 5.81e-12 | 63.2 |
| MS.gene064852.t1 | AT5G05770 | 33.333 | 84 | 55 | 1 | 63 | 146 | 29 | 111 | 8.88e-12 | 60.1 |
| MS.gene064852.t1 | AT5G59340 | 43.077 | 65 | 37 | 0 | 59 | 123 | 10 | 74 | 1.60e-11 | 62.0 |
| MS.gene064852.t1 | AT2G01500 | 35.577 | 104 | 57 | 2 | 49 | 142 | 37 | 140 | 4.28e-11 | 60.8 |
Find 37 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAGACTAATGTTTATAAT+TGG | 0.232522 | 3.3:+94432292 | MS.gene064852:CDS |
| TTGAACGAGCTCTTCTGTTC+TGG | 0.269547 | 3.3:-94432317 | None:intergenic |
| TATGTCTTTGATCTTCTGTT+TGG | 0.364760 | 3.3:-94432238 | None:intergenic |
| TCAACTTCTGTGTCTGCCTC+TGG | 0.402663 | 3.3:-94432381 | None:intergenic |
| GTCTTTGATCTTCTGTTTGG+TGG | 0.403902 | 3.3:-94432235 | None:intergenic |
| CGTTGGAGTCCAACGCTGCC+TGG | 0.416225 | 3.3:-94432160 | None:intergenic |
| CTGGACACAAGATAACTTCC+AGG | 0.432136 | 3.3:+94432142 | MS.gene064852:CDS |
| TGCAGGATTTGAGCACTTGT+TGG | 0.434550 | 3.3:+94432889 | MS.gene064852:intron |
| CTCAACAAGCTGATCAGAAA+TGG | 0.436221 | 3.3:-94430824 | None:intergenic |
| TGAGAGTTTATCACCTCATC+GGG | 0.446050 | 3.3:+94432455 | MS.gene064852:CDS |
| CCACTGATGATGGCTTGCTC+TGG | 0.448763 | 3.3:+94432123 | MS.gene064852:CDS |
| GCAGGATTTGAGCACTTGTT+GGG | 0.456755 | 3.3:+94432890 | MS.gene064852:intron |
| TCTTTGATCTTCTGTTTGGT+GGG | 0.460764 | 3.3:-94432234 | None:intergenic |
| TTGAGAGTTTATCACCTCAT+CGG | 0.471970 | 3.3:+94432454 | MS.gene064852:CDS |
| AGTTATGACCGATGAACAAA+TGG | 0.474281 | 3.3:+94430768 | None:intergenic |
| ACCGTGTTGCCCTAGTTCAA+TGG | 0.479896 | 3.3:-94432262 | None:intergenic |
| TAAAAGTTCCATTTGTTCAT+CGG | 0.487682 | 3.3:-94430776 | None:intergenic |
| TACGCTCAAGTATTTGAAGC+TGG | 0.512249 | 3.3:-94432188 | None:intergenic |
| ATTTGAAGCTGGATAGGCGT+TGG | 0.517894 | 3.3:-94432177 | None:intergenic |
| TTAAGATTAATACCTATGTC+AGG | 0.524253 | 3.3:-94432501 | None:intergenic |
| GTACTGTGATCCACTGATGA+TGG | 0.540609 | 3.3:+94432113 | MS.gene064852:CDS |
| TCAAGTATTTGAAGCTGGAT+AGG | 0.541162 | 3.3:-94432183 | None:intergenic |
| AAGCAATCATCTGTTACTGC+AGG | 0.542364 | 3.3:+94432345 | MS.gene064852:CDS |
| GAATGTTCAGGACTGAGACT+TGG | 0.551998 | 3.3:+94432084 | MS.gene064852:intron |
| ACCTGCGAGGTCGTGTTGAG+TGG | 0.570461 | 3.3:-94430863 | None:intergenic |
| AAAGACATAACCATTGAACT+AGG | 0.570662 | 3.3:+94432252 | MS.gene064852:CDS |
| ACCACTCAACACGACCTCGC+AGG | 0.579613 | 3.3:+94430862 | MS.gene064852:CDS |
| CCAATTATAAACATTAGTCT+CGG | 0.584869 | 3.3:-94432292 | None:intergenic |
| TTTATCACCTCATCGGGTCA+AGG | 0.591799 | 3.3:+94432461 | MS.gene064852:CDS |
| AAGACATAACCATTGAACTA+GGG | 0.603476 | 3.3:+94432253 | MS.gene064852:CDS |
| CCAGAGCAAGCCATCATCAG+TGG | 0.606100 | 3.3:-94432123 | None:intergenic |
| AGATAACTTCCAGGCAGCGT+TGG | 0.612319 | 3.3:+94432151 | MS.gene064852:CDS |
| TACATATCCTTGACCCGATG+AGG | 0.618531 | 3.3:-94432468 | None:intergenic |
| AGGAAATCATGCAGAGCCAG+AGG | 0.631315 | 3.3:+94432365 | MS.gene064852:CDS |
| ACCATTGAACTAGGGCAACA+CGG | 0.634091 | 3.3:+94432261 | MS.gene064852:CDS |
| TACATTCAGAGTCCTGACAT+AGG | 0.642781 | 3.3:+94432489 | MS.gene064852:CDS |
| ATAGTAGTAGTTTACCTGCG+AGG | 0.718032 | 3.3:-94430876 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATGAAAATAGTTTAA+CGG | - | chr3.3:94431475-94431494 | None:intergenic | 10.0% |
| !!! | TTTAATTCTCTATTTTTTTA+AGG | - | chr3.3:94431916-94431935 | None:intergenic | 10.0% |
| !! | CTATAAAAAAAAAACACTAA+AGG | - | chr3.3:94431837-94431856 | None:intergenic | 15.0% |
| !! | CTGTAATATAACATTTATAT+AGG | - | chr3.3:94431128-94431147 | None:intergenic | 15.0% |
| !! | TAAATTTATATGACATTAAG+TGG | + | chr3.3:94432858-94432877 | MS.gene064852:intron | 15.0% |
| !!! | AAAAACTAGTTTAATACAAA+AGG | - | chr3.3:94432558-94432577 | None:intergenic | 15.0% |
| !!! | AAAACTAGTTTAATACAAAA+GGG | - | chr3.3:94432557-94432576 | None:intergenic | 15.0% |
| !! | AAAAACACTAAAGGTTTAAT+TGG | - | chr3.3:94431828-94431847 | None:intergenic | 20.0% |
| !! | AGAACTCAAAAAATTAAATG+TGG | - | chr3.3:94431336-94431355 | None:intergenic | 20.0% |
| !! | ATTCAATTGTAAACAACAAA+TGG | - | chr3.3:94432752-94432771 | None:intergenic | 20.0% |
| !!! | AAAACATTCATTTTTGTAAG+AGG | + | chr3.3:94431380-94431399 | MS.gene064852:intron | 20.0% |
| !!! | AATAATGTACGATGATTTTT+CGG | - | chr3.3:94431779-94431798 | None:intergenic | 20.0% |
| !!! | GAACAGAAAAATTGATTTTT+TGG | - | chr3.3:94431702-94431721 | None:intergenic | 20.0% |
| !!! | TTTTTATAGGTGAATATTAG+TGG | + | chr3.3:94431949-94431968 | MS.gene064852:intron | 20.0% |
| ! | AATTACTTAGCTATAAAACC+TGG | + | chr3.3:94432803-94432822 | MS.gene064852:intron | 25.0% |
| ! | ACTAATGGAAACAACTTATT+TGG | - | chr3.3:94431565-94431584 | None:intergenic | 25.0% |
| ! | ATATAGGCAAATTTGTCTAA+GGG | - | chr3.3:94431112-94431131 | None:intergenic | 25.0% |
| ! | CCTATAAAAAAAAACACTCA+AGG | - | chr3.3:94431939-94431958 | None:intergenic | 25.0% |
| ! | GTTGTTTACAATTGAATGAT+TGG | + | chr3.3:94432755-94432774 | MS.gene064852:intron | 25.0% |
| ! | TAAAAGTTCCATTTGTTCAT+CGG | - | chr3.3:94430779-94430798 | None:intergenic | 25.0% |
| ! | TATATAGGCAAATTTGTCTA+AGG | - | chr3.3:94431113-94431132 | None:intergenic | 25.0% |
| ! | TGTTATATTGTTGATGTCAT+TGG | + | chr3.3:94431182-94431201 | MS.gene064852:intron | 25.0% |
| ! | TTAAGATTAATACCTATGTC+AGG | - | chr3.3:94432504-94432523 | None:intergenic | 25.0% |
| ! | TTCAAATAAGTCTATCCAAA+CGG | + | chr3.3:94431626-94431645 | MS.gene064852:intron | 25.0% |
| !! | AGAAAGAGAATACATGATTT+TGG | + | chr3.3:94431061-94431080 | MS.gene064852:intron | 25.0% |
| !! | CCAATTATAAACATTAGTCT+CGG | - | chr3.3:94432295-94432314 | None:intergenic | 25.0% |
| !!! | ACACTTTTTGGAATTACTAA+TGG | - | chr3.3:94431580-94431599 | None:intergenic | 25.0% |
| !!! | CCTTGAGTGTTTTTTTTTAT+AGG | + | chr3.3:94431936-94431955 | MS.gene064852:intron | 25.0% |
| AAAGACATAACCATTGAACT+AGG | + | chr3.3:94432252-94432271 | MS.gene064852:CDS | 30.0% | |
| AAATTAAATGTGGAGAAGTG+AGG | - | chr3.3:94431326-94431345 | None:intergenic | 30.0% | |
| AAGACATAACCATTGAACTA+GGG | + | chr3.3:94432253-94432272 | MS.gene064852:CDS | 30.0% | |
| CCGAGACTAATGTTTATAAT+TGG | + | chr3.3:94432292-94432311 | MS.gene064852:CDS | 30.0% | |
| GACATTGCATAATTTATGCA+GGG | + | chr3.3:94431279-94431298 | MS.gene064852:intron | 30.0% | |
| GTCAATGTTATTGAATGTTC+AGG | + | chr3.3:94432072-94432091 | MS.gene064852:intron | 30.0% | |
| TATGTCTTTGATCTTCTGTT+TGG | - | chr3.3:94432241-94432260 | None:intergenic | 30.0% | |
| TCAAATAAGTCTATCCAAAC+GGG | + | chr3.3:94431627-94431646 | MS.gene064852:intron | 30.0% | |
| TCTATGAATACTCACTAACT+AGG | + | chr3.3:94432526-94432545 | MS.gene064852:intron | 30.0% | |
| TTAATGCCTAAAACGAAGTA+TGG | - | chr3.3:94432841-94432860 | None:intergenic | 30.0% | |
| ! | TAAACACTTGTGACACTTTT+TGG | - | chr3.3:94431592-94431611 | None:intergenic | 30.0% |
| !! | AATTTCATTTTTGTTGTCCC+TGG | + | chr3.3:94431237-94431256 | MS.gene064852:intron | 30.0% |
| !! | ATTAAGTGGTTTGTTTATGC+AGG | + | chr3.3:94432872-94432891 | MS.gene064852:intron | 30.0% |
| !! | TCACATGTTTTGTTCTCTTT+TGG | - | chr3.3:94432411-94432430 | None:intergenic | 30.0% |
| !!! | ATTGATTTTTTGGAATCGAG+AGG | - | chr3.3:94431692-94431711 | None:intergenic | 30.0% |
| AATTCTCTGTGTTCAGTTAG+GGG | + | chr3.3:94432640-94432659 | MS.gene064852:intron | 35.0% | |
| ACAATTCTCTGTGTTCAGTT+AGG | + | chr3.3:94432638-94432657 | MS.gene064852:intron | 35.0% | |
| AGAGAGCTTATGGAAATAAG+CGG | + | chr3.3:94431521-94431540 | MS.gene064852:intron | 35.0% | |
| AGTGTCACAAGTGTTTATGT+CGG | + | chr3.3:94431595-94431614 | MS.gene064852:intron | 35.0% | |
| ATTGTCAATCGTATCGAACA+TGG | - | chr3.3:94432623-94432642 | None:intergenic | 35.0% | |
| CAATTCTCTGTGTTCAGTTA+GGG | + | chr3.3:94432639-94432658 | MS.gene064852:intron | 35.0% | |
| CACATGAAGAAATTCGTGTA+AGG | + | chr3.3:94432594-94432613 | MS.gene064852:intron | 35.0% | |
| CTAGTCCTAAATAAGTAGCT+CGG | - | chr3.3:94432031-94432050 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTCT+AGG | - | chr3.3:94431521-94431540 | None:intergenic | 35.0% | |
| GGACATTGCATAATTTATGC+AGG | + | chr3.3:94431278-94431297 | MS.gene064852:intron | 35.0% | |
| GTATGGCTGTTTATTTAACC+AGG | - | chr3.3:94432824-94432843 | None:intergenic | 35.0% | |
| TCTTTGATCTTCTGTTTGGT+GGG | - | chr3.3:94432237-94432256 | None:intergenic | 35.0% | |
| TTGAGAGTTTATCACCTCAT+CGG | + | chr3.3:94432454-94432473 | MS.gene064852:CDS | 35.0% | |
| TTGGGAAAAATTGAAGTTGC+AGG | + | chr3.3:94432908-94432927 | MS.gene064852:CDS | 35.0% | |
| ! | AAACAGCCATACTTCGTTTT+AGG | + | chr3.3:94432832-94432851 | MS.gene064852:intron | 35.0% |
| ! | AGTGAGTGCAGGATATATTT+TGG | - | chr3.3:94431654-94431673 | None:intergenic | 35.0% |
| ! | TCAAGTATTTGAAGCTGGAT+AGG | - | chr3.3:94432186-94432205 | None:intergenic | 35.0% |
| !!! | TTTTTTGAGTTCTAGCCACT+AGG | + | chr3.3:94431343-94431362 | MS.gene064852:intron | 35.0% |
| !!! | TTTTTTGTCTAGTAGCCTAG+TGG | - | chr3.3:94431361-94431380 | None:intergenic | 35.0% |
| AAATTGGTTACAGTGAGTGC+AGG | - | chr3.3:94431665-94431684 | None:intergenic | 40.0% | |
| AAGCAATCATCTGTTACTGC+AGG | + | chr3.3:94432345-94432364 | MS.gene064852:CDS | 40.0% | |
| ACCAACCGAGCTACTTATTT+AGG | + | chr3.3:94432023-94432042 | MS.gene064852:intron | 40.0% | |
| ATAGTAGTAGTTTACCTGCG+AGG | - | chr3.3:94430879-94430898 | None:intergenic | 40.0% | |
| CTCAACAAGCTGATCAGAAA+TGG | - | chr3.3:94430827-94430846 | None:intergenic | 40.0% | |
| GACAAGCGCTAAATCAATCA+AGG | - | chr3.3:94432055-94432074 | None:intergenic | 40.0% | |
| GGAATCGAGAGGACAAAAAT+TGG | - | chr3.3:94431681-94431700 | None:intergenic | 40.0% | |
| GTCTTTGATCTTCTGTTTGG+TGG | - | chr3.3:94432238-94432257 | None:intergenic | 40.0% | |
| TACATTCAGAGTCCTGACAT+AGG | + | chr3.3:94432489-94432508 | MS.gene064852:CDS | 40.0% | |
| TAGCTATCCTAGAGAGCTTA+TGG | + | chr3.3:94431511-94431530 | MS.gene064852:intron | 40.0% | |
| TCCTAAATAAGTAGCTCGGT+TGG | - | chr3.3:94432027-94432046 | None:intergenic | 40.0% | |
| TGAGAGTTTATCACCTCATC+GGG | + | chr3.3:94432455-94432474 | MS.gene064852:CDS | 40.0% | |
| TGCATAATTTATGCAGGGCT+GGG | + | chr3.3:94431284-94431303 | MS.gene064852:intron | 40.0% | |
| TTGCATAATTTATGCAGGGC+TGG | + | chr3.3:94431283-94431302 | MS.gene064852:intron | 40.0% | |
| ! | CGTATTTTCGATGAAGGCAA+TGG | + | chr3.3:94432207-94432226 | MS.gene064852:CDS | 40.0% |
| ! | CTTGAGCGTATTTTCGATGA+AGG | + | chr3.3:94432201-94432220 | MS.gene064852:CDS | 40.0% |
| ! | TACGCTCAAGTATTTGAAGC+TGG | - | chr3.3:94432191-94432210 | None:intergenic | 40.0% |
| !! | GGATATATTTTGGACCCGTT+TGG | - | chr3.3:94431644-94431663 | None:intergenic | 40.0% |
| ACCATTGAACTAGGGCAACA+CGG | + | chr3.3:94432261-94432280 | MS.gene064852:CDS | 45.0% | |
| CTGGACACAAGATAACTTCC+AGG | + | chr3.3:94432142-94432161 | MS.gene064852:CDS | 45.0% | |
| GAATGTTCAGGACTGAGACT+TGG | + | chr3.3:94432084-94432103 | MS.gene064852:intron | 45.0% | |
| GCAGGATTTGAGCACTTGTT+GGG | + | chr3.3:94432890-94432909 | MS.gene064852:intron | 45.0% | |
| GTACTGTGATCCACTGATGA+TGG | + | chr3.3:94432113-94432132 | MS.gene064852:CDS | 45.0% | |
| TACATATCCTTGACCCGATG+AGG | - | chr3.3:94432471-94432490 | None:intergenic | 45.0% | |
| TGCAGGATTTGAGCACTTGT+TGG | + | chr3.3:94432889-94432908 | MS.gene064852:intron | 45.0% | |
| TTGAACGAGCTCTTCTGTTC+TGG | - | chr3.3:94432320-94432339 | None:intergenic | 45.0% | |
| TTTATCACCTCATCGGGTCA+AGG | + | chr3.3:94432461-94432480 | MS.gene064852:CDS | 45.0% | |
| ! | ATTTGAAGCTGGATAGGCGT+TGG | - | chr3.3:94432180-94432199 | None:intergenic | 45.0% |
| ACCGTGTTGCCCTAGTTCAA+TGG | - | chr3.3:94432265-94432284 | None:intergenic | 50.0% | |
| AGATAACTTCCAGGCAGCGT+TGG | + | chr3.3:94432151-94432170 | MS.gene064852:CDS | 50.0% | |
| AGGAAATCATGCAGAGCCAG+AGG | + | chr3.3:94432365-94432384 | MS.gene064852:CDS | 50.0% | |
| CTAGTACCTTCAGTGTCCCT+TGG | + | chr3.3:94431997-94432016 | MS.gene064852:intron | 50.0% | |
| TCAACTTCTGTGTCTGCCTC+TGG | - | chr3.3:94432384-94432403 | None:intergenic | 50.0% | |
| ! | ATGTGGAGAAGTGAGGTGTC+CGG | - | chr3.3:94431319-94431338 | None:intergenic | 50.0% |
| !! | CAAGGGACACTGAAGGTACT+AGG | - | chr3.3:94431999-94432018 | None:intergenic | 50.0% |
| CCAGAGCAAGCCATCATCAG+TGG | - | chr3.3:94432126-94432145 | None:intergenic | 55.0% | |
| TGCCAACTGTGCAAGCTCCA+GGG | - | chr3.3:94431257-94431276 | None:intergenic | 55.0% | |
| TGGAGCTTGCACAGTTGGCA+GGG | + | chr3.3:94431257-94431276 | MS.gene064852:intron | 55.0% | |
| ! | TGTGGAGAAGTGAGGTGTCC+GGG | - | chr3.3:94431318-94431337 | None:intergenic | 55.0% |
| !! | CCACTGATGATGGCTTGCTC+TGG | + | chr3.3:94432123-94432142 | MS.gene064852:CDS | 55.0% |
| !! | TAGCTCGGTTGGTGAGCCAA+GGG | - | chr3.3:94432016-94432035 | None:intergenic | 55.0% |
| ACCACTCAACACGACCTCGC+AGG | + | chr3.3:94430862-94430881 | MS.gene064852:CDS | 60.0% | |
| ACCTGCGAGGTCGTGTTGAG+TGG | - | chr3.3:94430866-94430885 | None:intergenic | 60.0% | |
| CTGCCAACTGTGCAAGCTCC+AGG | - | chr3.3:94431258-94431277 | None:intergenic | 60.0% | |
| CTGGAGCTTGCACAGTTGGC+AGG | + | chr3.3:94431256-94431275 | MS.gene064852:intron | 60.0% | |
| GGTGAGCCAAGGGACACTGA+AGG | - | chr3.3:94432006-94432025 | None:intergenic | 60.0% | |
| GTCCCTGGAGCTTGCACAGT+TGG | + | chr3.3:94431252-94431271 | MS.gene064852:intron | 60.0% | |
| ! | GTGGAGAAGTGAGGTGTCCG+GGG | - | chr3.3:94431317-94431336 | None:intergenic | 60.0% |
| !! | GTAGCTCGGTTGGTGAGCCA+AGG | - | chr3.3:94432017-94432036 | None:intergenic | 60.0% |
| CAGGGCTGGGTTTCGAACCC+CGG | + | chr3.3:94431297-94431316 | MS.gene064852:intron | 65.0% | |
| CGTTGGAGTCCAACGCTGCC+TGG | - | chr3.3:94432163-94432182 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 94430772 | 94432955 | 94430772 | ID=MS.gene064852 |
| chr3.3 | mRNA | 94430772 | 94432955 | 94430772 | ID=MS.gene064852.t1;Parent=MS.gene064852 |
| chr3.3 | exon | 94430772 | 94430883 | 94430772 | ID=MS.gene064852.t1.exon1;Parent=MS.gene064852.t1 |
| chr3.3 | CDS | 94430772 | 94430883 | 94430772 | ID=cds.MS.gene064852.t1;Parent=MS.gene064852.t1 |
| chr3.3 | exon | 94432094 | 94432510 | 94432094 | ID=MS.gene064852.t1.exon2;Parent=MS.gene064852.t1 |
| chr3.3 | CDS | 94432094 | 94432510 | 94432094 | ID=cds.MS.gene064852.t1;Parent=MS.gene064852.t1 |
| chr3.3 | exon | 94432894 | 94432955 | 94432894 | ID=MS.gene064852.t1.exon3;Parent=MS.gene064852.t1 |
| chr3.3 | CDS | 94432894 | 94432955 | 94432894 | ID=cds.MS.gene064852.t1;Parent=MS.gene064852.t1 |
| Gene Sequence |
| Protein sequence |
