AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052488


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052488.t1 MTR_3g072660 97.130 453 12 1 1 453 1 452 0.0 909
MS.gene052488.t1 MTR_4g088935 96.689 453 13 1 1 453 1 451 0.0 905
MS.gene052488.t1 MTR_3g072660 95.585 453 12 2 1 453 1 445 0.0 886
MS.gene052488.t1 MTR_3g072660 96.623 385 12 1 1 385 1 384 0.0 763
MS.gene052488.t1 MTR_3g072660 94.805 385 12 2 1 385 1 377 0.0 741
MS.gene052488.t1 MTR_3g072660 96.648 358 11 1 1 358 1 357 0.0 708
MS.gene052488.t1 MTR_3g072660 99.083 327 3 0 127 453 1 327 0.0 674
MS.gene052488.t1 MTR_3g072660 96.942 327 3 1 127 453 1 320 0.0 653
MS.gene052488.t1 MTR_3g072660 96.309 298 10 1 1 298 1 297 0.0 584
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052488.t1 AT4G17020 74.336 452 114 1 1 452 1 450 0.0 722
MS.gene052488.t1 AT4G17020 74.336 452 114 1 1 452 1 450 0.0 722
MS.gene052488.t1 AT4G17020 74.336 452 114 1 1 452 1 450 0.0 721

Find 89 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCACTTTCAGTTAATTT+TGG 0.182729 4.3:-24037005 None:intergenic
GAGAATGGAATGGTTTATTA+TGG 0.208075 4.3:+24041011 MS.gene052488:CDS
TGTAGCTTTCTTACTACTTT+TGG 0.229854 4.3:-24041105 None:intergenic
ACCTGTGCCGGCTAAATTAT+TGG 0.265931 4.3:+24035438 MS.gene052488:CDS
ATTTCAGAGGAACATAATTA+AGG 0.312303 4.3:+24037508 MS.gene052488:CDS
CTCCTTTCTTGATGATGATT+CGG 0.327686 4.3:-24037759 None:intergenic
CAATGTTGCCATTGATAGAT+TGG 0.332658 4.3:+24035495 MS.gene052488:CDS
GATCATTGCCAAGAATTTCA+TGG 0.333040 4.3:+24034982 MS.gene052488:CDS
CACCATGTCCATGAAATTCT+TGG 0.335342 4.3:-24034990 None:intergenic
GGCTAAATTATTGGCGGAAT+GGG 0.342205 4.3:+24035447 MS.gene052488:CDS
CACAGCTTTGGTACATCATC+AGG 0.346440 4.3:+24037137 MS.gene052488:CDS
CAACTTCCAAATCTTATTGT+TGG 0.350456 4.3:+24040060 MS.gene052488:CDS
AATTATGTTCCTCTGAAATT+CGG 0.351671 4.3:-24037504 None:intergenic
ATAGCTCCAACAATAAGATT+TGG 0.356315 4.3:-24040066 None:intergenic
GTAGAGTTTATCGAGTTTGA+TGG 0.382908 4.3:-24035026 None:intergenic
TGTGAGGCTCCCAACATTAG+AGG 0.387289 4.3:+24036534 MS.gene052488:CDS
TTACAGTTATTGCATATTGA+TGG 0.396001 4.3:+24035415 MS.gene052488:CDS
AGAATGGAATGGTTTATTAT+GGG 0.397970 4.3:+24041012 MS.gene052488:CDS
TGCAGATAGTCAGTTTCTTT+CGG 0.401425 4.3:+24040659 MS.gene052488:intron
TGGGCTGGTCAAACTTCAAC+AGG 0.402831 4.3:+24037544 MS.gene052488:CDS
CAAAGAAGAGCTTATGTTGA+AGG 0.407543 4.3:-24036815 None:intergenic
TTGTGCTTTGATAGTCCATC+TGG 0.412236 4.3:-24035475 None:intergenic
GCTCCAAAATTAACTGAAAG+TGG 0.432592 4.3:+24037002 MS.gene052488:CDS
AAATCAAAATGCCTGAGGTT+AGG 0.443637 4.3:+24034960 None:intergenic
TAATAAACCATTCCATTCTC+TGG 0.444435 4.3:-24041008 None:intergenic
GCCTGAAAATGTCACAGATC+AGG 0.448319 4.3:+24040723 MS.gene052488:CDS
GCCAATAATTTAGCCGGCAC+AGG 0.449508 4.3:-24035439 None:intergenic
CGGCTAAATTATTGGCGGAA+TGG 0.450685 4.3:+24035446 MS.gene052488:CDS
TTAAGGACCTTGCAGACCTT+GGG 0.454174 4.3:+24037525 MS.gene052488:CDS
ATTAAGGACCTTGCAGACCT+TGG 0.455377 4.3:+24037524 MS.gene052488:CDS
AGATTCAAAGAAGATGCATT+TGG 0.456242 4.3:+24041036 MS.gene052488:CDS
GACTTATGCTCTGGAACAAT+GGG 0.456255 4.3:+24036564 MS.gene052488:CDS
CGTGTGACTGCGCCAGAGAA+TGG 0.459544 4.3:+24040996 MS.gene052488:CDS
AAGGTCTTGTCAACATGACT+TGG 0.470934 4.3:-24036796 None:intergenic
GTCTCAAGATCCTCTAATGT+TGG 0.472624 4.3:-24036544 None:intergenic
AGCCTCACAGTAATATTAGA+AGG 0.477881 4.3:-24036520 None:intergenic
TCAAAGTTGCTTACCCTGGA+TGG 0.478380 4.3:-24040887 None:intergenic
TCTCAAGATCCTCTAATGTT+GGG 0.478745 4.3:-24036543 None:intergenic
TTGAAGCAATTGACAATGAC+AGG 0.479397 4.3:+24035536 MS.gene052488:CDS
TATAGGGCAGGAAAGAAAGT+TGG 0.482264 4.3:+24037693 MS.gene052488:intron
CATTCCGCCAATAATTTAGC+CGG 0.493364 4.3:-24035445 None:intergenic
AGACTTATGCTCTGGAACAA+TGG 0.494366 4.3:+24036563 MS.gene052488:CDS
TCTCCTTCTTGCAGGAAGAT+CGG 0.500349 4.3:+24036081 MS.gene052488:intron
TGGATACAAATGCACAGCTT+TGG 0.501549 4.3:+24037125 MS.gene052488:CDS
ATAAACAGAACCTCTGACTC+AGG 0.514589 4.3:-24036861 None:intergenic
AATTACATTGTGAGATATTG+CGG 0.514608 4.3:+24039154 MS.gene052488:CDS
CAATTGAACCAATCTATCAA+TGG 0.514654 4.3:-24035503 None:intergenic
TCATCTGCGAAGCTATTCTC+AGG 0.530426 4.3:+24035059 MS.gene052488:CDS
TGCCAAGAATTTCATGGACA+TGG 0.531687 4.3:+24034988 MS.gene052488:CDS
GGATCTTGAGACTTATGCTC+TGG 0.535259 4.3:+24036555 MS.gene052488:CDS
GTGGTGACAGATTAGGTTGT+GGG 0.535695 4.3:+24040811 MS.gene052488:intron
GGACCTTGCAGACCTTGGGC+TGG 0.536902 4.3:+24037529 MS.gene052488:CDS
ACATATTTCTTTGCAAGAGG+TGG 0.536971 4.3:-24035391 None:intergenic
GTGTGGCAGGATGTATTTGA+AGG 0.539271 4.3:+24040971 MS.gene052488:intron
TCTGACTCAGGAGACGCCGC+TGG 0.540398 4.3:-24036849 None:intergenic
AGGTCTTGTCAACATGACTT+GGG 0.546852 4.3:-24036795 None:intergenic
GACCGAATCATCATCAAGAA+AGG 0.546881 4.3:+24037757 MS.gene052488:CDS
CAATGGCATTACAGCAGACC+AGG 0.547595 4.3:+24040119 MS.gene052488:CDS
AACACATATTTCTTTGCAAG+AGG 0.550355 4.3:-24035394 None:intergenic
ATTATGACGAGTTCCCATCC+AGG 0.551997 4.3:+24040873 MS.gene052488:CDS
CAGGAGAGAGGTGTTGATGC+AGG 0.559845 4.3:+24037258 MS.gene052488:intron
TGACTTGATATCATTCATGC+TGG 0.561348 4.3:+24037281 MS.gene052488:CDS
GCGGAATGGGTGCTTCCAGA+TGG 0.565096 4.3:+24035460 MS.gene052488:CDS
CAAAGTTGCTTACCCTGGAT+GGG 0.570298 4.3:-24040886 None:intergenic
TTAGAAGGCATTGATTCCCT+CGG 0.574898 4.3:-24036505 None:intergenic
TCATCCTCGTGTTGCACAGA+GGG 0.581937 4.3:+24040690 MS.gene052488:CDS
AGTTTATCGAGTTTGATGGC+AGG 0.583098 4.3:-24035022 None:intergenic
TTGGCAATGATCCTAACCTC+AGG 0.587350 4.3:-24034971 None:intergenic
GGTGGTGACAGATTAGGTTG+TGG 0.588257 4.3:+24040810 MS.gene052488:intron
GCATATTGATGGACCTGTGC+CGG 0.588398 4.3:+24035426 MS.gene052488:CDS
AGCGGCGTCTCCTGAGTCAG+AGG 0.589108 4.3:+24036851 MS.gene052488:CDS
GCATTTGGTCGTCAAGTCTG+AGG 0.592805 4.3:+24041051 MS.gene052488:CDS
GTTGAAGTTTGACCAGCCCA+AGG 0.597505 4.3:-24037541 None:intergenic
CAAGAATTTCATGGACATGG+TGG 0.599325 4.3:+24034991 MS.gene052488:CDS
TTATGACGAGTTCCCATCCA+GGG 0.606538 4.3:+24040874 MS.gene052488:CDS
TGACCAGCCCAAGGTCTGCA+AGG 0.612502 4.3:-24037532 None:intergenic
CGAATCATCATCAAGAAAGG+AGG 0.616443 4.3:+24037760 MS.gene052488:CDS
ACACATTGACCGAATTTCAG+AGG 0.620159 4.3:+24037495 MS.gene052488:CDS
TGTGCCGGCTAAATTATTGG+CGG 0.623227 4.3:+24035441 MS.gene052488:CDS
TTATGCTCTGGAACAATGGG+AGG 0.625310 4.3:+24036567 MS.gene052488:CDS
GGAATATATCACTAATTCTG+AGG 0.632294 4.3:+24037159 MS.gene052488:CDS
TGGCAGTGGAACTTTGCCGA+GGG 0.654665 4.3:+24036489 MS.gene052488:intron
ATGGCAGTGGAACTTTGCCG+AGG 0.657791 4.3:+24036488 MS.gene052488:intron
ACAGCTTTGGTACATCATCA+GGG 0.675051 4.3:+24037138 MS.gene052488:CDS
CTCATCCTCGTGTTGCACAG+AGG 0.680297 4.3:+24040689 MS.gene052488:CDS
AAACGAAATCAAAATGCCTG+AGG 0.682481 4.3:+24034955 None:intergenic
GGTACCCTCTGTGCAACACG+AGG 0.694512 4.3:-24040694 None:intergenic
TGCCTTCTAATATTACTGTG+AGG 0.698083 4.3:+24036518 MS.gene052488:CDS
GACTGCGCCAGAGAATGGAA+TGG 0.724470 4.3:+24041001 MS.gene052488:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATTTATTACATTAG+CGG + chr4.3:24038376-24038395 MS.gene052488:intron 10.0%
!! AGATAAAAAGTAATAAAATA+TGG - chr4.3:24039475-24039494 None:intergenic 10.0%
!!! TTTATTTTATGAAAATAGAA+GGG - chr4.3:24039771-24039790 None:intergenic 10.0%
!! AAAAAGAAAGAAGAAATATA+AGG - chr4.3:24038569-24038588 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr4.3:24039696-24039715 MS.gene052488:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr4.3:24039715-24039696 None:intergenic 15.0%
!! AACAATTTATAGCTTAATTA+AGG - chr4.3:24035133-24035152 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr4.3:24039697-24039716 MS.gene052488:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr4.3:24039716-24039697 None:intergenic 15.0%
!! CAAAGAAAAAAAAAAAGAAT+GGG - chr4.3:24038074-24038093 None:intergenic 15.0%
!! GAATAATATACATAATCAAA+AGG - chr4.3:24035959-24035978 None:intergenic 15.0%
!! TATAAGTACAAGATAAATTA+AGG - chr4.3:24039896-24039915 None:intergenic 15.0%
!! TTAAGTTAAAAACATCATTA+AGG + chr4.3:24040537-24040556 MS.gene052488:intron 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + chr4.3:24039606-24039625 MS.gene052488:intron 15.0%
!!! CATTCTATTTAATTTTTTCA+GGG + chr4.3:24039081-24039100 MS.gene052488:intron 15.0%
!!! GTTTATTTTATGAAAATAGA+AGG - chr4.3:24039772-24039791 None:intergenic 15.0%
!!! TATTTTGCTTTTTTAAATTG+TGG + chr4.3:24040166-24040185 MS.gene052488:intron 15.0%
!!! TCATTCTATTTAATTTTTTC+AGG + chr4.3:24039080-24039099 MS.gene052488:intron 15.0%
!! AAAACAAATCAATTGTGAAA+CGG - chr4.3:24037794-24037813 None:intergenic 20.0%
!! AAACAAATTTGAATTGAGTA+GGG - chr4.3:24039345-24039364 None:intergenic 20.0%
!! AATAAGATGAAAACAACTTA+TGG + chr4.3:24035191-24035210 MS.gene052488:intron 20.0%
!! ACTGCTAATGTAAAAAATAT+AGG - chr4.3:24038411-24038430 None:intergenic 20.0%
!! AGAAAAAAAATACTAAACTG+GGG - chr4.3:24036064-24036083 None:intergenic 20.0%
!! ATTAAATTGCAGTTACAAAA+GGG - chr4.3:24037423-24037442 None:intergenic 20.0%
!! CTTACAAATCATAAAATGAT+AGG + chr4.3:24035362-24035381 MS.gene052488:intron 20.0%
!! GAGAAAAAAAATACTAAACT+GGG - chr4.3:24036065-24036084 None:intergenic 20.0%
!! GCAAAGAAAAAAAAAAAGAA+TGG - chr4.3:24038075-24038094 None:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG - chr4.3:24039346-24039365 None:intergenic 20.0%
!! TATAATTTCTAATACTTACC+TGG - chr4.3:24040140-24040159 None:intergenic 20.0%
!! TATATTATATGCCTAATCAT+TGG - chr4.3:24037474-24037493 None:intergenic 20.0%
!! TTCACCAAAATATTATTGTT+TGG + chr4.3:24039958-24039977 MS.gene052488:intron 20.0%
!!! AAAAAGTTCTAAAACAAGAT+TGG - chr4.3:24038250-24038269 None:intergenic 20.0%
!!! AAGACCAAACAATAATATTT+TGG - chr4.3:24039965-24039984 None:intergenic 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG - chr4.3:24039440-24039459 None:intergenic 20.0%
!!! AATTTTGTTCATGTGTATAT+AGG + chr4.3:24038652-24038671 MS.gene052488:intron 20.0%
!!! ACAGCATTTTTATAATTTCA+TGG - chr4.3:24036338-24036357 None:intergenic 20.0%
!!! ACTTTAAGAAAATTCAAGAA+CGG - chr4.3:24035892-24035911 None:intergenic 20.0%
!!! CAATAATATTTTGGTGAAAT+AGG - chr4.3:24039956-24039975 None:intergenic 20.0%
!!! CTTTTTTTCACAACTTTATA+GGG + chr4.3:24037677-24037696 MS.gene052488:intron 20.0%
!!! GAATTTTCTTAAAGTTTATG+AGG + chr4.3:24035897-24035916 MS.gene052488:intron 20.0%
!!! TAATCTTTTTTGTTAGTAGA+TGG + chr4.3:24038203-24038222 MS.gene052488:intron 20.0%
!!! TCTTTTTTTCACAACTTTAT+AGG + chr4.3:24037676-24037695 MS.gene052488:intron 20.0%
!!! TGAAGATTTTATTCAAATGA+AGG - chr4.3:24040345-24040364 None:intergenic 20.0%
!!! TTCATATGAATTTTGAATTC+AGG - chr4.3:24036373-24036392 None:intergenic 20.0%
!!! TTTTCTGATATGTAGTATTA+TGG + chr4.3:24040789-24040808 MS.gene052488:intron 20.0%
!!! TTTTGAGACAAATCATATAA+TGG + chr4.3:24035288-24035307 MS.gene052488:intron 20.0%
! AAAAGTGGAATCAAAAGAAA+AGG - chr4.3:24036600-24036619 None:intergenic 25.0%
! AACAAACCTATATAGACAAT+GGG + chr4.3:24036304-24036323 MS.gene052488:intron 25.0%
! AATATCTAATAGTGAGTAGT+TGG + chr4.3:24040017-24040036 MS.gene052488:intron 25.0%
! AATTACATTGTGAGATATTG+CGG + chr4.3:24039154-24039173 MS.gene052488:CDS 25.0%
! AGAATGGAATGGTTTATTAT+GGG + chr4.3:24041012-24041031 MS.gene052488:CDS 25.0%
! AGTGCAGAAAAACAAAATTA+GGG - chr4.3:24039312-24039331 None:intergenic 25.0%
! ATAAAATCGTTAATACGAGT+GGG + chr4.3:24036246-24036265 MS.gene052488:intron 25.0%
! ATCATGTCATCAAAATGAAA+AGG + chr4.3:24038599-24038618 MS.gene052488:intron 25.0%
! ATGTACCTTAATAGAAACAA+GGG - chr4.3:24036228-24036247 None:intergenic 25.0%
! ATTTCAGAGGAACATAATTA+AGG + chr4.3:24037508-24037527 MS.gene052488:CDS 25.0%
! CATTAAATTGCAGTTACAAA+AGG - chr4.3:24037424-24037443 None:intergenic 25.0%
! CATTTGAATAAAATCTTCAC+TGG + chr4.3:24040346-24040365 MS.gene052488:intron 25.0%
! GAATTTCTATGTTTCTTTGT+TGG - chr4.3:24040498-24040517 None:intergenic 25.0%
! GATAATTCTACACATATAAG+TGG - chr4.3:24035845-24035864 None:intergenic 25.0%
! GGAGAAAAAAAATACTAAAC+TGG - chr4.3:24036066-24036085 None:intergenic 25.0%
! TAACAAACCTATATAGACAA+TGG + chr4.3:24036303-24036322 MS.gene052488:intron 25.0%
! TATGTACCTTAATAGAAACA+AGG - chr4.3:24036229-24036248 None:intergenic 25.0%
! TGTAGAAAACTAATGTTTGT+CGG + chr4.3:24038856-24038875 MS.gene052488:intron 25.0%
! TGTTAGTAGATGGATAAAAA+AGG + chr4.3:24038213-24038232 MS.gene052488:intron 25.0%
! TTACAGTTATTGCATATTGA+TGG + chr4.3:24035415-24035434 MS.gene052488:CDS 25.0%
! TTTAATAGAAAGTTTAGACG+TGG + chr4.3:24037817-24037836 MS.gene052488:intron 25.0%
!! AAACCACTTTCAGTTAATTT+TGG - chr4.3:24037008-24037027 None:intergenic 25.0%
!! AAGCTTTATAGCTGAATTAA+TGG - chr4.3:24039926-24039945 None:intergenic 25.0%
!! ACTTGTATGTCTAAATCTTT+TGG + chr4.3:24040434-24040453 MS.gene052488:intron 25.0%
!! ATATGGTTTAGATGATCTTT+TGG + chr4.3:24038692-24038711 MS.gene052488:intron 25.0%
!! CTGCTACTTATAAGTTATAA+AGG - chr4.3:24040277-24040296 None:intergenic 25.0%
!! GCAATGATGTATTCTATTTT+GGG + chr4.3:24039209-24039228 MS.gene052488:intron 25.0%
!! TAAGGTGTTTAATGAAAACA+TGG - chr4.3:24035115-24035134 None:intergenic 25.0%
!! TATGGTTTAGATGATCTTTT+GGG + chr4.3:24038693-24038712 MS.gene052488:intron 25.0%
!! TGCAATGATGTATTCTATTT+TGG + chr4.3:24039208-24039227 MS.gene052488:intron 25.0%
!! TTCAAATTTGACTTCTGTAA+AGG + chr4.3:24040248-24040267 MS.gene052488:intron 25.0%
!! TTCAGAAACTTTTAGTACAT+GGG + chr4.3:24036142-24036161 MS.gene052488:CDS 25.0%
!! TTGTATAATGCTTTTGACAA+TGG + chr4.3:24040102-24040121 MS.gene052488:CDS 25.0%
!! TTGTCTTCTTTTTCTTTTCA+TGG + chr4.3:24036181-24036200 MS.gene052488:intron 25.0%
!!! AAACTGGAAGTTGTTTTTTA+TGG + chr4.3:24039852-24039871 MS.gene052488:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + chr4.3:24039635-24039654 MS.gene052488:intron 25.0%
!!! AATTATGTTCCTCTGAAATT+CGG - chr4.3:24037507-24037526 None:intergenic 25.0%
!!! AGATTTGTTGCTAATTTTGT+TGG - chr4.3:24037725-24037744 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + chr4.3:24039634-24039653 MS.gene052488:intron 25.0%
!!! TATTCACTTTTCTCCTATTA+AGG + chr4.3:24035089-24035108 MS.gene052488:intron 25.0%
!!! TTTTTTTCCTTCCAATGATT+AGG + chr4.3:24037460-24037479 MS.gene052488:intron 25.0%
AACACATATTTCTTTGCAAG+AGG - chr4.3:24035397-24035416 None:intergenic 30.0%
AATCAAAAAAGCCATAACAG+GGG - chr4.3:24040938-24040957 None:intergenic 30.0%
AGATGCAGAATGATTTAACT+TGG + chr4.3:24037612-24037631 MS.gene052488:intron 30.0%
AGATTCAAAGAAGATGCATT+TGG + chr4.3:24041036-24041055 MS.gene052488:CDS 30.0%
ATAACATGTCAATCGTTCAT+TGG + chr4.3:24038953-24038972 MS.gene052488:intron 30.0%
ATAGAGACAGATAACTGTTA+CGG - chr4.3:24037188-24037207 None:intergenic 30.0%
ATAGCTCCAACAATAAGATT+TGG - chr4.3:24040069-24040088 None:intergenic 30.0%
ATATGTATGGAAGTTTCTGT+TGG + chr4.3:24038791-24038810 MS.gene052488:intron 30.0%
ATTTATTACATTAGCGGTGT+TGG + chr4.3:24038382-24038401 MS.gene052488:intron 30.0%
ATTTGATGCATACCAAAAAC+TGG - chr4.3:24037031-24037050 None:intergenic 30.0%
CAACTTCCAAATCTTATTGT+TGG + chr4.3:24040060-24040079 MS.gene052488:CDS 30.0%
CAAGATTAGAACACTATGAA+AGG - chr4.3:24039572-24039591 None:intergenic 30.0%
CAATTGAACCAATCTATCAA+TGG - chr4.3:24035506-24035525 None:intergenic 30.0%
CAGTGCAGAAAAACAAAATT+AGG - chr4.3:24039313-24039332 None:intergenic 30.0%
CATAAAATCGTTAATACGAG+TGG + chr4.3:24036245-24036264 MS.gene052488:intron 30.0%
CTACTTAAGTAAGTACTTGT+GGG - chr4.3:24035234-24035253 None:intergenic 30.0%
CTTTACTATCTTTCTACCTT+AGG + chr4.3:24040461-24040480 MS.gene052488:intron 30.0%
GAATCAAAAAAGCCATAACA+GGG - chr4.3:24040939-24040958 None:intergenic 30.0%
GAGAATGGAATGGTTTATTA+TGG + chr4.3:24041011-24041030 MS.gene052488:CDS 30.0%
GGAATATATCACTAATTCTG+AGG + chr4.3:24037159-24037178 MS.gene052488:CDS 30.0%
GTTGGAAAAATGATAACCTA+AGG - chr4.3:24040480-24040499 None:intergenic 30.0%
TAAAATCTTCACTGGTGAAT+TGG + chr4.3:24040354-24040373 MS.gene052488:intron 30.0%
TAATAAACCATTCCATTCTC+TGG - chr4.3:24041011-24041030 None:intergenic 30.0%
TCATTGCAGAAAATATTTCG+CGG - chr4.3:24039196-24039215 None:intergenic 30.0%
TCTACTTAAGTAAGTACTTG+TGG - chr4.3:24035235-24035254 None:intergenic 30.0%
TCTGATATGTAGTATTATGG+TGG + chr4.3:24040792-24040811 MS.gene052488:intron 30.0%
TCTTAAAGTTTATGAGGAAC+AGG + chr4.3:24035903-24035922 MS.gene052488:intron 30.0%
TGCATTACATTAAGTTCAAG+TGG - chr4.3:24037064-24037083 None:intergenic 30.0%
TGTACAGAGTAAACAAAAAG+TGG - chr4.3:24036615-24036634 None:intergenic 30.0%
TTAGACATACAAGTATATCG+TGG - chr4.3:24040428-24040447 None:intergenic 30.0%
TTATATGCCTAATCATTGGA+AGG - chr4.3:24037470-24037489 None:intergenic 30.0%
TTCAAATGAAGGATTGAAGT+CGG - chr4.3:24040334-24040353 None:intergenic 30.0%
TTGTTATGAATTACAGCTGA+TGG + chr4.3:24037105-24037124 MS.gene052488:intron 30.0%
! AATCAGTCTGAAGTAGTAAA+AGG - chr4.3:24038928-24038947 None:intergenic 30.0%
! AATGAAAACATGGCCTTAAT+AGG - chr4.3:24035105-24035124 None:intergenic 30.0%
! ATGGTTTAGATGATCTTTTG+GGG + chr4.3:24038694-24038713 MS.gene052488:intron 30.0%
! CTTCAGAAACTTTTAGTACA+TGG + chr4.3:24036141-24036160 MS.gene052488:CDS 30.0%
! GTTTTCTACAAGTTGTAGTA+TGG - chr4.3:24038846-24038865 None:intergenic 30.0%
! TCAATTTGAGACTTGATATG+TGG + chr4.3:24040305-24040324 MS.gene052488:intron 30.0%
!! AGATATTGCGGTTATTTTCA+AGG + chr4.3:24039166-24039185 MS.gene052488:CDS 30.0%
!! AGCTTAGTTTTCATGTCATT+GGG + chr4.3:24037304-24037323 MS.gene052488:CDS 30.0%
!! ATGTTCCCTTGTTTCTATTA+AGG + chr4.3:24036220-24036239 MS.gene052488:intron 30.0%
!! GAAGAGTTTTAGCAAAAATC+AGG - chr4.3:24035798-24035817 None:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr4.3:24039728-24039747 MS.gene052488:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr4.3:24039727-24039746 MS.gene052488:intron 30.0%
!!! ATTTTTTTTCTCCTTCTTGC+AGG + chr4.3:24036073-24036092 MS.gene052488:intron 30.0%
!!! CTTGTTTTATTTGTTGCATG+TGG + chr4.3:24035748-24035767 MS.gene052488:intron 30.0%
AAACCTATATAGACAATGGG+TGG + chr4.3:24036307-24036326 MS.gene052488:intron 35.0%
AAGCAATGTTGATCAATGAG+GGG + chr4.3:24038148-24038167 MS.gene052488:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr4.3:24039712-24039731 MS.gene052488:intron 35.0%
ACATATTTCTTTGCAAGAGG+TGG - chr4.3:24035394-24035413 None:intergenic 35.0%
ACTAAACTGGGGTAAAACAA+GGG - chr4.3:24036053-24036072 None:intergenic 35.0%
ACTTGAATGTTTGCTTTAGC+TGG + chr4.3:24036443-24036462 MS.gene052488:intron 35.0%
AGCCTCACAGTAATATTAGA+AGG - chr4.3:24036523-24036542 None:intergenic 35.0%
AGGAAGTTCCAAAACCAAAA+GGG - chr4.3:24039822-24039841 None:intergenic 35.0%
AGTCAGAGGTTCTGTTTATT+TGG + chr4.3:24036865-24036884 MS.gene052488:intron 35.0%
AGTTCCTTCAACACATTACA+AGG - chr4.3:24035714-24035733 None:intergenic 35.0%
AGTTTCTGTTGGACATTATC+AGG + chr4.3:24038802-24038821 MS.gene052488:intron 35.0%
ATAGAAACAAGGGAACATGA+TGG - chr4.3:24036218-24036237 None:intergenic 35.0%
ATATGTAGAAGACAGTGAAC+AGG - chr4.3:24038546-24038565 None:intergenic 35.0%
CAAAAAGTCATTGGAGGTTT+AGG - chr4.3:24036741-24036760 None:intergenic 35.0%
CAAAGAAGAGCTTATGTTGA+AGG - chr4.3:24036818-24036837 None:intergenic 35.0%
CAATGTTGCCATTGATAGAT+TGG + chr4.3:24035495-24035514 MS.gene052488:CDS 35.0%
CAGGATTTGATGTCACAATT+TGG + chr4.3:24035922-24035941 MS.gene052488:intron 35.0%
CTTCCAGTTTCAATTTCGAT+AGG - chr4.3:24039842-24039861 None:intergenic 35.0%
CTTCCTATCGAAATTGAAAC+TGG + chr4.3:24039836-24039855 MS.gene052488:intron 35.0%
GAACATGAGAAAAGACTAGA+GGG - chr4.3:24039794-24039813 None:intergenic 35.0%
GAAGCAATGTTGATCAATGA+GGG + chr4.3:24038147-24038166 MS.gene052488:intron 35.0%
GATCATTGCCAAGAATTTCA+TGG + chr4.3:24034982-24035001 MS.gene052488:CDS 35.0%
GCTCCAAAATTAACTGAAAG+TGG + chr4.3:24037002-24037021 MS.gene052488:CDS 35.0%
GGAATCAAAAAAGCCATAAC+AGG - chr4.3:24040940-24040959 None:intergenic 35.0%
GGTTTACCACAAAAAGTCAT+TGG - chr4.3:24036750-24036769 None:intergenic 35.0%
GTAGAGTTTATCGAGTTTGA+TGG - chr4.3:24035029-24035048 None:intergenic 35.0%
GTGTTGTATGAGTATCATAC+AGG - chr4.3:24038027-24038046 None:intergenic 35.0%
TAACCACCCATTGTCTATAT+AGG - chr4.3:24036313-24036332 None:intergenic 35.0%
TAAGTTGCAACAAGAAACAC+TGG - chr4.3:24036771-24036790 None:intergenic 35.0%
TACTAAACTGGGGTAAAACA+AGG - chr4.3:24036054-24036073 None:intergenic 35.0%
TAGAAACAAGGGAACATGAT+GGG - chr4.3:24036217-24036236 None:intergenic 35.0%
TAGGAAGTTCCAAAACCAAA+AGG - chr4.3:24039823-24039842 None:intergenic 35.0%
TATGAGTATCATACAGGTGT+CGG - chr4.3:24038021-24038040 None:intergenic 35.0%
TATGTAGAAGACAGTGAACA+GGG - chr4.3:24038545-24038564 None:intergenic 35.0%
TCTACAAGTTGTAGTATGGA+AGG - chr4.3:24038842-24038861 None:intergenic 35.0%
TCTACGAGATTAAAGATGTG+TGG + chr4.3:24038125-24038144 MS.gene052488:intron 35.0%
TCTCAAGATCCTCTAATGTT+GGG - chr4.3:24036546-24036565 None:intergenic 35.0%
TCTGCATGTGATTTCGTTTA+GGG + chr4.3:24037847-24037866 MS.gene052488:intron 35.0%
TGAACGATTGACATGTTATG+AGG - chr4.3:24038952-24038971 None:intergenic 35.0%
TGACTTGATATCATTCATGC+TGG + chr4.3:24037281-24037300 MS.gene052488:CDS 35.0%
TGAGTAGTTGGATATATGCA+GGG + chr4.3:24040029-24040048 MS.gene052488:intron 35.0%
TGCAGATAGTCAGTTTCTTT+CGG + chr4.3:24040659-24040678 MS.gene052488:intron 35.0%
TGCCTTCTAATATTACTGTG+AGG + chr4.3:24036518-24036537 MS.gene052488:CDS 35.0%
TTAACTCGTAATACGCGATA+TGG - chr4.3:24036286-24036305 None:intergenic 35.0%
TTACCACAAAAAGTCATTGG+AGG - chr4.3:24036747-24036766 None:intergenic 35.0%
TTCTGCATGTGATTTCGTTT+AGG + chr4.3:24037846-24037865 MS.gene052488:intron 35.0%
TTGAAGCAATTGACAATGAC+AGG + chr4.3:24035536-24035555 MS.gene052488:CDS 35.0%
! AAACCTCCAATGACTTTTTG+TGG + chr4.3:24036741-24036760 MS.gene052488:intron 35.0%
! AGACAATTTAGCCTCTGAAA+TGG + chr4.3:24035623-24035642 MS.gene052488:intron 35.0%
! CTGTTTTGCTTGCATATGTA+TGG + chr4.3:24038778-24038797 MS.gene052488:intron 35.0%
! CTTTGATGAAAGTTTTCCAG+CGG + chr4.3:24036833-24036852 MS.gene052488:CDS 35.0%
! GATTCCTTATGTCATTTGTG+TGG + chr4.3:24040954-24040973 MS.gene052488:intron 35.0%
! TATTATGGTGGTGACAGATT+AGG + chr4.3:24040804-24040823 MS.gene052488:intron 35.0%
! TCAAATGCTAGCCTATACTA+TGG + chr4.3:24035667-24035686 MS.gene052488:intron 35.0%
! TGAAAGTGGTTTCCAGTTTT+TGG + chr4.3:24037016-24037035 MS.gene052488:CDS 35.0%
! TGGTTTAGATGATCTTTTGG+GGG + chr4.3:24038695-24038714 MS.gene052488:intron 35.0%
! TTTTCACAACTTTATAGGGC+AGG + chr4.3:24037681-24037700 MS.gene052488:intron 35.0%
!! CTCCTTTCTTGATGATGATT+CGG - chr4.3:24037762-24037781 None:intergenic 35.0%
!! GAGCTTAGTTTTCATGTCAT+TGG + chr4.3:24037303-24037322 MS.gene052488:CDS 35.0%
!! GCTTAGTTTTCATGTCATTG+GGG + chr4.3:24037305-24037324 MS.gene052488:CDS 35.0%
!! TATGTTTTGAACATGCTTCG+TGG + chr4.3:24035331-24035350 MS.gene052488:intron 35.0%
!!! TTTTCAGGGATTTGTTGTTG+TGG + chr4.3:24039095-24039114 MS.gene052488:intron 35.0%
AACTCCTTAGCTATGAAGCA+CGG + chr4.3:24037871-24037890 MS.gene052488:intron 40.0%
AAGTATATCGTGGTTCTCGA+AGG - chr4.3:24040418-24040437 None:intergenic 40.0%
ACACATTGACCGAATTTCAG+AGG + chr4.3:24037495-24037514 MS.gene052488:CDS 40.0%
ACCAGTTTGAACCATTTCAG+AGG - chr4.3:24035637-24035656 None:intergenic 40.0%
AGAATCAAAGTTGCTTACCC+TGG - chr4.3:24040894-24040913 None:intergenic 40.0%
AGCAATGTTGATCAATGAGG+GGG + chr4.3:24038149-24038168 MS.gene052488:intron 40.0%
AGTTCCAAAACCAAAAGGGA+AGG - chr4.3:24039818-24039837 None:intergenic 40.0%
ATAAACAGAACCTCTGACTC+AGG - chr4.3:24036864-24036883 None:intergenic 40.0%
ATAGCTCCTTAGACATGCTA+AGG + chr4.3:24038468-24038487 MS.gene052488:intron 40.0%
CAAGAATTTCATGGACATGG+TGG + chr4.3:24034991-24035010 MS.gene052488:CDS 40.0%
CACCATGTCCATGAAATTCT+TGG - chr4.3:24034993-24035012 None:intergenic 40.0%
CACGTCCTTGTGGTTAAATA+TGG + chr4.3:24036469-24036488 MS.gene052488:intron 40.0%
CACTGCCATATTTAACCACA+AGG - chr4.3:24036477-24036496 None:intergenic 40.0%
CATTCCGCCAATAATTTAGC+CGG - chr4.3:24035448-24035467 None:intergenic 40.0%
CGAAATCACATGCAGAAACA+AGG - chr4.3:24037843-24037862 None:intergenic 40.0%
CGAATCATCATCAAGAAAGG+AGG + chr4.3:24037760-24037779 MS.gene052488:CDS 40.0%
CTAGCCTATACTATGGAGTT+TGG + chr4.3:24035674-24035693 MS.gene052488:intron 40.0%
CTTGTGGTTAAATATGGCAG+TGG + chr4.3:24036475-24036494 MS.gene052488:intron 40.0%
GACCGAATCATCATCAAGAA+AGG + chr4.3:24037757-24037776 MS.gene052488:CDS 40.0%
GATACTCATACAACACGTGT+TGG + chr4.3:24038031-24038050 MS.gene052488:intron 40.0%
GATATGTCTTATATGTGCCG+AGG - chr4.3:24038107-24038126 None:intergenic 40.0%
GGAACATGAGAAAAGACTAG+AGG - chr4.3:24039795-24039814 None:intergenic 40.0%
GGAAGCAATGTTGATCAATG+AGG + chr4.3:24038146-24038165 MS.gene052488:intron 40.0%
GGCTAAATTATTGGCGGAAT+GGG + chr4.3:24035447-24035466 MS.gene052488:CDS 40.0%
GTCTCAAGATCCTCTAATGT+TGG - chr4.3:24036547-24036566 None:intergenic 40.0%
GTCTTAAGTATCCCCTGTTA+TGG + chr4.3:24040924-24040943 MS.gene052488:intron 40.0%
GTGAGTAGTTGGATATATGC+AGG + chr4.3:24040028-24040047 MS.gene052488:intron 40.0%
GTGTCCAAACTCCATAGTAT+AGG - chr4.3:24035681-24035700 None:intergenic 40.0%
GTTCCAAAACCAAAAGGGAA+GGG - chr4.3:24039817-24039836 None:intergenic 40.0%
TAGCTCCTTAGACATGCTAA+GGG + chr4.3:24038469-24038488 MS.gene052488:intron 40.0%
TATAGGGCAGGAAAGAAAGT+TGG + chr4.3:24037693-24037712 MS.gene052488:intron 40.0%
TCGTAATACGCGATATGGAA+GGG - chr4.3:24036281-24036300 None:intergenic 40.0%
TGAACAAAGACACACAGATG+TGG - chr4.3:24035983-24036002 None:intergenic 40.0%
TGCACCTTGTAATGTGTTGA+AGG + chr4.3:24035707-24035726 MS.gene052488:intron 40.0%
TGCCAAGAATTTCATGGACA+TGG + chr4.3:24034988-24035007 MS.gene052488:CDS 40.0%
TGGATACAAATGCACAGCTT+TGG + chr4.3:24037125-24037144 MS.gene052488:CDS 40.0%
TGTTGGACATTATCAGGTTC+TGG + chr4.3:24038808-24038827 MS.gene052488:intron 40.0%
TTAGCATGTCTAAGGAGCTA+TGG - chr4.3:24038469-24038488 None:intergenic 40.0%
TTCCAAAACCAAAAGGGAAG+GGG - chr4.3:24039816-24039835 None:intergenic 40.0%
! AAGGTCTTGTCAACATGACT+TGG - chr4.3:24036799-24036818 None:intergenic 40.0%
! ACAGCTTTGGTACATCATCA+GGG + chr4.3:24037138-24037157 MS.gene052488:CDS 40.0%
! ACCTGATCTGTGACATTTTC+AGG - chr4.3:24040727-24040746 None:intergenic 40.0%
! AGGTCTTGTCAACATGACTT+GGG - chr4.3:24036798-24036817 None:intergenic 40.0%
! AGTTTATCGAGTTTGATGGC+AGG - chr4.3:24035025-24035044 None:intergenic 40.0%
! GGTTTAGATGATCTTTTGGG+GGG + chr4.3:24038696-24038715 MS.gene052488:intron 40.0%
! TAGTTTTCATGTCATTGGGG+AGG + chr4.3:24037308-24037327 MS.gene052488:CDS 40.0%
! TGCTCTTCATCGTCTACTTT+TGG + chr4.3:24037233-24037252 MS.gene052488:intron 40.0%
! TTGTGCTTTGATAGTCCATC+TGG - chr4.3:24035478-24035497 None:intergenic 40.0%
!! AGACTTATGCTCTGGAACAA+TGG + chr4.3:24036563-24036582 MS.gene052488:CDS 40.0%
!! GACTTATGCTCTGGAACAAT+GGG + chr4.3:24036564-24036583 MS.gene052488:CDS 40.0%
!! TTAGAAGGCATTGATTCCCT+CGG - chr4.3:24036508-24036527 None:intergenic 40.0%
ACAACACGTGTTGGACAACT+CGG + chr4.3:24038040-24038059 MS.gene052488:intron 45.0%
ACAAGGGTCGAGAGTGAAAA+TGG - chr4.3:24036037-24036056 None:intergenic 45.0%
AGGGGAACTCTCTATACTGT+TGG + chr4.3:24038719-24038738 MS.gene052488:intron 45.0%
AGTGTCAGACAAACTCAGAC+TGG + chr4.3:24037941-24037960 MS.gene052488:intron 45.0%
ATTAAGGACCTTGCAGACCT+TGG + chr4.3:24037524-24037543 MS.gene052488:CDS 45.0%
ATTATGACGAGTTCCCATCC+AGG + chr4.3:24040873-24040892 MS.gene052488:CDS 45.0%
ATTGTGGTACTCGCTGTAGA+TGG + chr4.3:24040182-24040201 MS.gene052488:intron 45.0%
CAAAGTTGCTTACCCTGGAT+GGG - chr4.3:24040889-24040908 None:intergenic 45.0%
CATGACACGCCTAATCCTTT+AGG - chr4.3:24037900-24037919 None:intergenic 45.0%
CATGTCAATCGTTCATTGGC+TGG + chr4.3:24038957-24038976 MS.gene052488:intron 45.0%
CCTGCCACACAAATGACATA+AGG - chr4.3:24040961-24040980 None:intergenic 45.0%
CGGCTAAATTATTGGCGGAA+TGG + chr4.3:24035446-24035465 MS.gene052488:CDS 45.0%
CTAAAGGATTAGGCGTGTCA+TGG + chr4.3:24037898-24037917 MS.gene052488:intron 45.0%
CTCGTAATACGCGATATGGA+AGG - chr4.3:24036282-24036301 None:intergenic 45.0%
CTGGTCAAACTTCAACAGGT+TGG + chr4.3:24037548-24037567 MS.gene052488:intron 45.0%
GAGCTTCTCTGTCTCTGTAT+CGG - chr4.3:24036986-24037005 None:intergenic 45.0%
GCAATGTTGATCAATGAGGG+GGG + chr4.3:24038150-24038169 MS.gene052488:intron 45.0%
GCCTGAAAATGTCACAGATC+AGG + chr4.3:24040723-24040742 MS.gene052488:CDS 45.0%
GGATCTTGAGACTTATGCTC+TGG + chr4.3:24036555-24036574 MS.gene052488:CDS 45.0%
GTGTGGCAGGATGTATTTGA+AGG + chr4.3:24040971-24040990 MS.gene052488:intron 45.0%
TATGAAGCACGGACACCTAA+AGG + chr4.3:24037882-24037901 MS.gene052488:intron 45.0%
TCAAAGTTGCTTACCCTGGA+TGG - chr4.3:24040890-24040909 None:intergenic 45.0%
TCATCTGCGAAGCTATTCTC+AGG + chr4.3:24035059-24035078 MS.gene052488:CDS 45.0%
TCTCCTTCTTGCAGGAAGAT+CGG + chr4.3:24036081-24036100 MS.gene052488:intron 45.0%
TGTGCAACAGATTCTCAGCA+AGG - chr4.3:24037349-24037368 None:intergenic 45.0%
TTAAGGACCTTGCAGACCTT+GGG + chr4.3:24037525-24037544 MS.gene052488:CDS 45.0%
TTATGACGAGTTCCCATCCA+GGG + chr4.3:24040874-24040893 MS.gene052488:CDS 45.0%
TTCTTTGCTTCGACACACCT+CGG + chr4.3:24038087-24038106 MS.gene052488:intron 45.0%
TTCTTTGCTTCGACACTCCT+TGG + chr4.3:24037987-24038006 MS.gene052488:intron 45.0%
TTGGCAATGATCCTAACCTC+AGG - chr4.3:24034974-24034993 None:intergenic 45.0%
TTTCCGATCTTCCTGCAAGA+AGG - chr4.3:24036087-24036106 None:intergenic 45.0%
! CACAGCTTTGGTACATCATC+AGG + chr4.3:24037137-24037156 MS.gene052488:CDS 45.0%
! CCTTATGTCATTTGTGTGGC+AGG + chr4.3:24040958-24040977 MS.gene052488:intron 45.0%
! GTGGTGACAGATTAGGTTGT+GGG + chr4.3:24040811-24040830 MS.gene052488:intron 45.0%
!! ACCTGTGCCGGCTAAATTAT+TGG + chr4.3:24035438-24035457 MS.gene052488:CDS 45.0%
!! GCCTCTGAAATGGTTCAAAC+TGG + chr4.3:24035633-24035652 MS.gene052488:intron 45.0%
!! TAGATGATCTTTTGGGGGGA+GGG + chr4.3:24038700-24038719 MS.gene052488:intron 45.0%
!! TCATCGTCTACTTTTGGTGC+AGG + chr4.3:24037239-24037258 MS.gene052488:intron 45.0%
!! TGTGCCGGCTAAATTATTGG+CGG + chr4.3:24035441-24035460 MS.gene052488:CDS 45.0%
!! TTAGATGATCTTTTGGGGGG+AGG + chr4.3:24038699-24038718 MS.gene052488:intron 45.0%
!! TTATGCTCTGGAACAATGGG+AGG + chr4.3:24036567-24036586 MS.gene052488:CDS 45.0%
!!! TTCCCCTTCCCTTTTGGTTT+TGG + chr4.3:24039811-24039830 MS.gene052488:intron 45.0%
!! AGTATATATTTAATTATATA+TGG + chr4.3:24038675-24038694 MS.gene052488:intron 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG + chr4.3:24039667-24039686 MS.gene052488:intron 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG + chr4.3:24039668-24039687 MS.gene052488:intron 5.0%
!!! TAATTTTTATTTTTTTGAAT+GGG + chr4.3:24040586-24040605 MS.gene052488:intron 5.0%
!!! TTAATTTTTATTTTTTTGAA+TGG + chr4.3:24040585-24040604 MS.gene052488:intron 5.0%
CAATGGCATTACAGCAGACC+AGG + chr4.3:24040119-24040138 MS.gene052488:CDS 50.0%
CGACGTCTTAGTGTCGTGTT+AGG + chr4.3:24038433-24038452 MS.gene052488:intron 50.0%
CTCCACCCTTAGCATGTCTA+AGG - chr4.3:24038477-24038496 None:intergenic 50.0%
CTCCTTAGACATGCTAAGGG+TGG + chr4.3:24038472-24038491 MS.gene052488:intron 50.0%
CTTAGACATGCTAAGGGTGG+AGG + chr4.3:24038475-24038494 MS.gene052488:intron 50.0%
GACACTTGTCGTACGAGTGT+CGG - chr4.3:24037927-24037946 None:intergenic 50.0%
GCACGGACACCTAAAGGATT+AGG + chr4.3:24037888-24037907 MS.gene052488:intron 50.0%
GCATTTGGTCGTCAAGTCTG+AGG + chr4.3:24041051-24041070 MS.gene052488:CDS 50.0%
GCCAATAATTTAGCCGGCAC+AGG - chr4.3:24035442-24035461 None:intergenic 50.0%
GTGTCCGTGCTTCATAGCTA+AGG - chr4.3:24037878-24037897 None:intergenic 50.0%
GTTGAAGTTTGACCAGCCCA+AGG - chr4.3:24037544-24037563 None:intergenic 50.0%
TAGCTGGTAACACGTCCTTG+TGG + chr4.3:24036459-24036478 MS.gene052488:intron 50.0%
TCATCCTCGTGTTGCACAGA+GGG + chr4.3:24040690-24040709 MS.gene052488:CDS 50.0%
TGCTTCGACACTCCTTGGAT+CGG + chr4.3:24037992-24038011 MS.gene052488:intron 50.0%
TGTGAGGCTCCCAACATTAG+AGG + chr4.3:24036534-24036553 MS.gene052488:CDS 50.0%
! CTCATGTTCCCCTTCCCTTT+TGG + chr4.3:24039805-24039824 MS.gene052488:intron 50.0%
! GCATATTGATGGACCTGTGC+CGG + chr4.3:24035426-24035445 MS.gene052488:CDS 50.0%
! GGTGGTGACAGATTAGGTTG+TGG + chr4.3:24040810-24040829 MS.gene052488:intron 50.0%
!! AGATGATCTTTTGGGGGGAG+GGG + chr4.3:24038701-24038720 MS.gene052488:intron 50.0%
!! CGTTCATTGGCTGGCTTTAG+TGG + chr4.3:24038966-24038985 MS.gene052488:intron 50.0%
!! CTACTTTTGGTGCAGGAGAG+AGG + chr4.3:24037246-24037265 MS.gene052488:intron 50.0%
!! GTGACATTTTCAGGCACTGC+TGG - chr4.3:24040718-24040737 None:intergenic 50.0%
!! TGGGCTGGTCAAACTTCAAC+AGG + chr4.3:24037544-24037563 MS.gene052488:CDS 50.0%
ATGGCAGTGGAACTTTGCCG+AGG + chr4.3:24036488-24036507 MS.gene052488:intron 55.0%
CTCATCCTCGTGTTGCACAG+AGG + chr4.3:24040689-24040708 MS.gene052488:CDS 55.0%
GACTGCGCCAGAGAATGGAA+TGG + chr4.3:24041001-24041020 MS.gene052488:CDS 55.0%
TGGCAGTGGAACTTTGCCGA+GGG + chr4.3:24036489-24036508 MS.gene052488:intron 55.0%
!! CAGGAGAGAGGTGTTGATGC+AGG + chr4.3:24037258-24037277 MS.gene052488:intron 55.0%
CGTGTGACTGCGCCAGAGAA+TGG + chr4.3:24040996-24041015 MS.gene052488:CDS 60.0%
GCGGAATGGGTGCTTCCAGA+TGG + chr4.3:24035460-24035479 MS.gene052488:CDS 60.0%
GGTACCCTCTGTGCAACACG+AGG - chr4.3:24040697-24040716 None:intergenic 60.0%
TGACCAGCCCAAGGTCTGCA+AGG - chr4.3:24037535-24037554 None:intergenic 60.0%
!! AGGTGTCGGACACCGATCCA+AGG - chr4.3:24038007-24038026 None:intergenic 60.0%
AGCGGCGTCTCCTGAGTCAG+AGG + chr4.3:24036851-24036870 MS.gene052488:CDS 65.0%
GGACCTTGCAGACCTTGGGC+TGG + chr4.3:24037529-24037548 MS.gene052488:CDS 65.0%
TCTGACTCAGGAGACGCCGC+TGG - chr4.3:24036852-24036871 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 24034968 24041114 24034968 ID=MS.gene052488
chr4.3 mRNA 24034968 24041114 24034968 ID=MS.gene052488.t1;Parent=MS.gene052488
chr4.3 exon 24034968 24035080 24034968 ID=MS.gene052488.t1.exon1;Parent=MS.gene052488.t1
chr4.3 CDS 24034968 24035080 24034968 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24035384 24035557 24035384 ID=MS.gene052488.t1.exon2;Parent=MS.gene052488.t1
chr4.3 CDS 24035384 24035557 24035384 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24036095 24036163 24036095 ID=MS.gene052488.t1.exon3;Parent=MS.gene052488.t1
chr4.3 CDS 24036095 24036163 24036095 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24036495 24036588 24036495 ID=MS.gene052488.t1.exon4;Parent=MS.gene052488.t1
chr4.3 CDS 24036495 24036588 24036495 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24036772 24036872 24036772 ID=MS.gene052488.t1.exon5;Parent=MS.gene052488.t1
chr4.3 CDS 24036772 24036872 24036772 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24036992 24037037 24036992 ID=MS.gene052488.t1.exon6;Parent=MS.gene052488.t1
chr4.3 CDS 24036992 24037037 24036992 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24037121 24037180 24037121 ID=MS.gene052488.t1.exon7;Parent=MS.gene052488.t1
chr4.3 CDS 24037121 24037180 24037121 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24037261 24037329 24037261 ID=MS.gene052488.t1.exon8;Parent=MS.gene052488.t1
chr4.3 CDS 24037261 24037329 24037261 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24037482 24037565 24037482 ID=MS.gene052488.t1.exon9;Parent=MS.gene052488.t1
chr4.3 CDS 24037482 24037565 24037482 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24037698 24037781 24037698 ID=MS.gene052488.t1.exon10;Parent=MS.gene052488.t1
chr4.3 CDS 24037698 24037781 24037698 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24039102 24039187 24039102 ID=MS.gene052488.t1.exon11;Parent=MS.gene052488.t1
chr4.3 CDS 24039102 24039187 24039102 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24040050 24040140 24040050 ID=MS.gene052488.t1.exon12;Parent=MS.gene052488.t1
chr4.3 CDS 24040050 24040140 24040050 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24040664 24040744 24040664 ID=MS.gene052488.t1.exon13;Parent=MS.gene052488.t1
chr4.3 CDS 24040664 24040744 24040664 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24040821 24040895 24040821 ID=MS.gene052488.t1.exon14;Parent=MS.gene052488.t1
chr4.3 CDS 24040821 24040895 24040821 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
chr4.3 exon 24040980 24041114 24040980 ID=MS.gene052488.t1.exon15;Parent=MS.gene052488.t1
chr4.3 CDS 24040980 24041114 24040980 ID=cds.MS.gene052488.t1;Parent=MS.gene052488.t1
Gene Sequence

>MS.gene052488

ATGCCTGAGGTTAGGATCATTGCCAAGAATTTCATGGACATGGTGGCTTCAATGCCTGCCATCAAACTCGATAAACTCTACGAGAATGCATTCATCTGCGAAGCTATTCTCAGGTTATTATTATTCACTTTTCTCCTATTAAGGCCATGTTTTCATTAAACACCTTAATTAAGCTATAAATTGTTTTCATATATGCTATAAATTGTTGTAGAAAACTTGTTGAAATAAGATGAAAACAACTTATGGCATATCATAACAAATAGCCCACAAGTACTTACTTAAGTAGATAAACTCAAATAAGTGCTTGTGAGTTGTGAGCTTTTTGAGACAAATCATATAATGGAAGTAAATTGTATTTCTTCTTATGTTTTGAACATGCTTCGTGGTTTTAAAACTTACAAATCATAAAATGATAGGTCTCTTCCACCTCTTGCAAAGAAATATGTGTTACAGTTATTGCATATTGATGGACCTGTGCCGGCTAAATTATTGGCGGAATGGGTGCTTCCAGATGGACTATCAAAGCACAATGTTGCCATTGATAGATTGGTTCAATTGAGAGTTTTCGTTGAAGCAATTGACAATGACAGGTGCTTGAGACATTATTCTCTCTTCAAATTTTTCATTTTCTGTATCTCTTATGAATATAAAAAGTAGACAATTTAGCCTCTGAAATGGTTCAAACTGGTTCATTTTGTTTCAAATGCTAGCCTATACTATGGAGTTTGGACACATATTCTGCACCTTGTAATGTGTTGAAGGAACTTTTTGTGATAAAAACTTGTTTTATTTGTTGCATGTGGTAGTTAAATGAAATTATATGTATTCCTGATTTTTGCTAAAACTCTTCACTTTCTTCTTTGTTTCTCTTAGACCACTTATATGTGTAGAATTATCAATCACTTTATAGCATGACACAGTCCGTTCTTGAATTTTCTTAAAGTTTATGAGGAACAGGATTTGATGTCACAATTTGGTTCATTTTTTTCCTTTTGATTATGTATATTATTCTCCACATCTGTGTGTCTTTGTTCAAGCTTTGAAAGATCACAGTACTGAAACATCACCATTTTCACTCTCGACCCTTGTTTTACCCCAGTTTAGTATTTTTTTTCTCCTTCTTGCAGGAAGATCGGAAAAACTTACGAAGTTAATTCAACATATCAGAGAAGTCTTCAGAAACTTTTAGTACATGGGTGAGTAGTACATCGCTTTGTCTTCTTTTTCTTTTCATGGTAATAGTTATCCCATCATGTTCCCTTGTTTCTATTAAGGTACATAAAATCGTTAATACGAGTGGGTCGATAAAACCCTTCCATATCGCGTATTACGAGTTAACAAACCTATATAGACAATGGGTGGTTACTCCATGAAATTATAAAAATGCTGTTTAATAGTCATTCCTGAATTCAAAATTCATATGAAAAAAATCACTTTGATGTGATTATTAAAATGTTTACTACTGTCATAGTACAACTTGAATGTTTGCTTTAGCTGGTAACACGTCCTTGTGGTTAAATATGGCAGTGGAACTTTGCCGAGGGAATCAATGCCTTCTAATATTACTGTGAGGCTCCCAACATTAGAGGATCTTGAGACTTATGCTCTGGAACAATGGGAGGTGAAGTGCCTTTTCTTTTGATTCCACTTTTTGTTTACTCTGTACATCTATTTAGCAATTTATTCTTAATATTATTTATTATATTAACGCTTTAATAATTTGACTTAATTAATATGTGATGTGTTGTTTAAATTTTGACTAAAGTAAAGCCTAAACCTCCAATGACTTTTTGTGGTAAACCAGTGTTTCTTGTTGCAACTTATAAGCCCAAGTCATGTTGACAAGACCTTCAACATAAGCTCTTCTTTGATGAAAGTTTTCCAGCGGCGTCTCCTGAGTCAGAGGTTCTGTTTATTTGGCAGCGATACTTCTCATTTATAACAGTTGTTTGCACTCTGTTCATATATGTAGTTGTTGTAAATTGTATCTCATATTTGATATAATATTTTATGTACCGATACAGAGACAGAGAAGCTCCAAAATTAACTGAAAGTGGTTTCCAGTTTTTGGTATGCATCAAATGATTTATAAGCCACTTGAACTTAATGTAATGCATTTTTCTAAATTTAGAATTGTTTGTTATGAATTACAGCTGATGGATACAAATGCACAGCTTTGGTACATCATCAGGGAATATATCACTAATTCTGAGGTAGCCGTAACAGTTATCTGTCTCTATATGTTTTTGCTATTTGTTTTCTGCATGCTCTTCATCGTCTACTTTTGGTGCAGGAGAGAGGTGTTGATGCAGGTGACTTGATATCATTCATGCTGGAGCTTAGTTTTCATGTCATTGGGGAGGTTAGACATTCTTGTACCTTGCTGAGAATCTGTTGCACATGAAACTATTATGTTCTACATTGTCGTAAATTTTACTTAGTTGTCTTATTTCCCTTTTGTAACTGCAATTTAATGCGACTTTGACACTTGATTTTTTTCCTTCCAATGATTAGGCATATAATATAAACACATTGACCGAATTTCAGAGGAACATAATTAAGGACCTTGCAGACCTTGGGCTGGTCAAACTTCAACAGGTTGGTTATATTAATTTGTGTGCTTATATTTGTAGATAATGTGATGAGATGCAGAATGATTTAACTTGGTGTATTTATTCAGCATTTTTTGTCTCACTTTTAATTTTTTTTCTTTTTTTCACAACTTTATAGGGCAGGAAAGAAAGTTGGTTTATACCAACAAAATTAGCAACAAATCTTTCAGTGAGCATGACCGAATCATCATCAAGAAAGGAGGTTTCTTATCCGTTTCACAATTGATTTGTTTTAATTTTAATAGAAAGTTTAGACGTGGCCTTGTTTCTGCATGTGATTTCGTTTAGGGAAACTCCTTAGCTATGAAGCACGGACACCTAAAGGATTAGGCGTGTCATGGTGTCCGACACTCGTACGACAAGTGTCAGACAAACTCAGACTGGTGTCTCAAAAATTTGTTTATTTCTTCTTTGCTTCGACACTCCTTGGATCGGTGTCCGACACCTGTATGATACTCATACAACACGTGTTGGACAACTCGGACAAGTATCCCATTCTTTTTTTTTTTCTTTGCTTCGACACACCTCGGCACATATAAGACATATCTACGAGATTAAAGATGTGTGGAAGCAATGTTGATCAATGAGGGGGGTTAAAGACATTAAATTTGTTAACAATATTTTAATCTTTTTTGTTAGTAGATGGATAAAAAAGGTCAAATACTATCCAATCTTGTTTTAGAACTTTTTAAAGAAAGAAATTGCTCGATTTAGATGCACATGTATATATTTTGATTCTCGATTTAGATCTTTTACAAATAATACTAATATTTGATTTAATTATAATAAATTAATAAATATAATTTATTACATTAGCGGTGTTGGTGTCCTATATTTTTTACATTAGCAGTCTCGACGTCTTAGTGTCGTGTTAGGTGTCTGTGCTCCATAGCTCCTTAGACATGCTAAGGGTGGAGGCTCTGTAGTAATTTTTTTGTTTGAGCTGAAATTTTCTCTCTGTGCCCTGTTCACTGTCTTCTACATATCCTTATATTTCTTCTTTCTTTTTAATTAAATTTATCATGTCATCAAAATGAAAAGGAAACTGAAATCAAATTTAAATGTTGCTTTAAATTTTGTTCATGTGTATATAGGAGTATATATTTAATTATATATGGTTTAGATGATCTTTTGGGGGGAGGGGAACTCTCTATACTGTTGGTATTAATTTAATTTGATTTCAATCAATATGTCTAAGCTGTTTTGCTTGCATATGTATGGAAGTTTCTGTTGGACATTATCAGGTTCTGGTTTCTTCACCTTCCATACTACAACTTGTAGAAAACTAATGTTTGTCGGAGTTTTCAAAATTTTCTTCGCTGTGAATCTTTTGTTGAACTTATCACCTTTTACTACTTCAGACTGATTACCTCATAACATGTCAATCGTTCATTGGCTGGCTTTAGTGGACTTGTTCTAATCTATTACACATTGCAACAATAAATATAGATTTTTCTAAAGCGAAGTGTAAAAGAGTCGTGAATATCAATTAATATAATGTCATTCTATTTAATTTTTTCAGGGATTTGTTGTTGTGGAAACAAATTTTAGAGTTTATGCTTACTCGACTTCAAAATTACATTGTGAGATATTGCGGTTATTTTCAAGGTATGCCGCGAAATATTTTCTGCAATGATGTATTCTATTTTGGGTTAATTATGTTTCTAGTCCCTATAAAATAGCGACCTTGTAAGTTTAGTCCCTACTTAATTTTAATAGCATTTTTAGTCCCTAATTTTGTTTTTCTGCACTGAGTATTAGTCCCTACTCAATTCAAATTTGTTTAATTTATGCTTAAACTCTTAAATTTTTGAACAATTTTTTGCAGACATGTTTAGAACATTACTAAAAGTTCGTCCGCAAAAAATTATCGCAAAATTTGATTTCTACATCCATATTTTATTACTTTTTATCTTTAACTTTTGTCGTTTTAAAAAATTCATATTTAATTCATTTCATGTCAGAAAATTCTAAATTTTAGTAAACGAACCTTTCATAGTGTTCTAATCTTGTCTCAAAAAAATCGTTCAAAAATTTAAGAGTTTAAGGATAATTAATCAAACTTTGTTTTAGCAGGGACTAAAATTATAAGTAAATTTTTTTTTATAGGGACTAAAAATGCTATTAAAATTAAGTAGGGACTAAACTTACAAGGTCGCTATTTTATAGGGACTAGAAACATAATTAACCCTTCTATTTTCATAAAATAAACCCTCTAGTCTTTTCTCATGTTCCCCTTCCCTTTTGGTTTTGGAACTTCCTATCGAAATTGAAACTGGAAGTTGTTTTTTATGGAATATGTTTTTTTATTATCCTTAATTTATCTTGTACTTATATACTAAACCATTAATTCAGCTATAAAGCTTTAAATGACCTATTTCACCAAAATATTATTGTTTGGTCTTTAGTACAACAAGCGTTTCTTTTTTCATTTATAAATATCTAATAGTGAGTAGTTGGATATATGCAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGAGCTATTACAAAAGAAAGCTTGTATAATGCTTTTGACAATGGCATTACAGCAGACCAGGTAAGTATTAGAAATTATATTGTATTATTTTGCTTTTTTAAATTGTGGTACTCGCTGTAGATGGACGTATATTTCTTGCTACACAATGTATAGTCTCAACATTGTTCTTCAAATTTGACTTCTGTAAAGGAAACCTTTATAACTTATAAGTAGCAGTAAGCTATTCAATTTGAGACTTGATATGTGGTGACCGACTTCAATCCTTCATTTGAATAAAATCTTCACTGGTGAATTGGTAGATGCATTTGAGTTATTAATGTTTTTACTATTGCATCCTTCGAGAACCACGATATACTTGTATGTCTAAATCTTTTGGCATTCTTTACTATCTTTCTACCTTAGGTTATCATTTTTCCAACAAAGAAACATAGAAATTCTACGTGAAATTGCTTCGCTTTAAGTTAAAAACATCATTAAGGAAAAGCTGTTTGTGTCAGTTGACGTTTAATTTTTATTTTTTTGAATGGGTTTAATTCAGATTCAAACAATATCTTACACAGCAACTGTGTGCATTATGTTGCAGATAGTCAGTTTCTTTCGGCAGAATGCTCATCCTCGTGTTGCACAGAGGGTACCAGCAGTGCCTGAAAATGTCACAGATCAGGTTTTGAGTCTTATTAGTGTTTATGTGTGTTTTCTTTACTTTGATTTTCTGATATGTAGTATTATGGTGGTGACAGATTAGGTTGTGGGAATCAGATCTAAACAGAGTTGAGATGACAGAAGCATATTATTATGACGAGTTCCCATCCAGGGTAAGCAACTTTGATTCTGCGAGTTCATGTCTTAAGTATCCCCTGTTATGGCTTTTTTGATTCCTTATGTCATTTGTGTGGCAGGATGTATTTGAAGGTGCGTGTGACTGCGCCAGAGAATGGAATGGTTTATTATGGGAAGATTCAAAGAAGATGCATTTGGTCGTCAAGTCTGAGGTTCATACTTACGTACGAGATTTTTTACGCCGCCAAAAGTAG

Protein sequence

>MS.gene052488.t1

MPEVRIIAKNFMDMVASMPAIKLDKLYENAFICEAILRSLPPLAKKYVLQLLHIDGPVPAKLLAEWVLPDGLSKHNVAIDRLVQLRVFVEAIDNDRKIGKTYEVNSTYQRSLQKLLVHGGTLPRESMPSNITVRLPTLEDLETYALEQWECFLLQLISPSHVDKTFNISSSLMKVFQRRLLSQRDREAPKLTESGFQFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIVSFFRQNAHPRVAQRVPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWNGLLWEDSKKMHLVVKSEVHTYVRDFLRRQK