Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066493.t1 | AET03577.2 | 90.1 | 406 | 13 | 2 | 1 | 406 | 1 | 379 | 3.60E-194 | 687.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066493.t1 | Q9FKY4 | 55.2 | 406 | 171 | 3 | 1 | 406 | 1 | 395 | 3.7e-123 | 443.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066493.t1 | G7L8P3 | 90.1 | 406 | 13 | 2 | 1 | 406 | 1 | 379 | 2.6e-194 | 687.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72673 | MS.gene066493 | PPI |
| MS.gene82524 | MS.gene066493 | PPI |
| MS.gene066493 | MS.gene86525 | PPI |
| MS.gene066493 | MS.gene64908 | PPI |
| MS.gene72674 | MS.gene066493 | PPI |
| MS.gene65344 | MS.gene066493 | PPI |
| MS.gene64906 | MS.gene066493 | PPI |
| MS.gene066493 | MS.gene23822 | PPI |
| MS.gene86523 | MS.gene066493 | PPI |
| MS.gene64908 | MS.gene066493 | PPI |
| MS.gene86524 | MS.gene066493 | PPI |
| MS.gene99561 | MS.gene066493 | PPI |
| MS.gene64907 | MS.gene066493 | PPI |
| MS.gene72672 | MS.gene066493 | PPI |
| MS.gene066493 | MS.gene86524 | PPI |
| MS.gene69976 | MS.gene066493 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066493.t1 | MTR_8g073160 | 90.148 | 406 | 13 | 2 | 1 | 406 | 1 | 379 | 0.0 | 723 |
| MS.gene066493.t1 | MTR_5g024660 | 68.571 | 420 | 118 | 2 | 1 | 406 | 1 | 420 | 0.0 | 590 |
| MS.gene066493.t1 | MTR_5g024640 | 65.476 | 420 | 131 | 2 | 1 | 406 | 1 | 420 | 0.0 | 573 |
| MS.gene066493.t1 | MTR_5g024640 | 63.684 | 380 | 124 | 2 | 1 | 366 | 1 | 380 | 0.0 | 509 |
| MS.gene066493.t1 | MTR_5g024520 | 59.113 | 406 | 114 | 3 | 1 | 406 | 1 | 354 | 5.04e-162 | 459 |
| MS.gene066493.t1 | MTR_5g024640 | 60.333 | 300 | 105 | 2 | 1 | 286 | 1 | 300 | 2.96e-132 | 382 |
| MS.gene066493.t1 | MTR_5g024970 | 41.805 | 421 | 226 | 6 | 1 | 406 | 1 | 417 | 9.08e-114 | 339 |
| MS.gene066493.t1 | MTR_5g024560 | 60.000 | 265 | 92 | 2 | 156 | 406 | 35 | 299 | 3.03e-110 | 326 |
| MS.gene066493.t1 | MTR_8g072560 | 39.655 | 406 | 237 | 5 | 1 | 403 | 1 | 401 | 3.19e-108 | 324 |
| MS.gene066493.t1 | MTR_5g024970 | 39.509 | 448 | 225 | 7 | 1 | 406 | 1 | 444 | 4.72e-108 | 325 |
| MS.gene066493.t1 | MTR_5g024970 | 40.576 | 382 | 208 | 6 | 1 | 367 | 1 | 378 | 8.02e-96 | 292 |
| MS.gene066493.t1 | MTR_5g024970 | 42.241 | 348 | 183 | 5 | 74 | 406 | 9 | 353 | 5.22e-94 | 286 |
| MS.gene066493.t1 | MTR_8g006775 | 35.577 | 416 | 252 | 4 | 1 | 403 | 1 | 413 | 1.53e-89 | 277 |
| MS.gene066493.t1 | MTR_8g006780 | 39.066 | 407 | 244 | 3 | 1 | 403 | 1 | 407 | 7.61e-89 | 275 |
| MS.gene066493.t1 | MTR_5g024580 | 69.880 | 166 | 50 | 0 | 1 | 166 | 1 | 166 | 1.74e-80 | 245 |
| MS.gene066493.t1 | MTR_5g024970 | 40.125 | 319 | 172 | 6 | 1 | 304 | 1 | 315 | 1.84e-73 | 232 |
| MS.gene066493.t1 | MTR_5g024970 | 39.203 | 301 | 164 | 6 | 1 | 286 | 1 | 297 | 2.25e-65 | 212 |
| MS.gene066493.t1 | MTR_7g074190 | 33.250 | 400 | 256 | 7 | 2 | 397 | 21 | 413 | 2.97e-59 | 199 |
| MS.gene066493.t1 | MTR_1g108390 | 28.118 | 441 | 267 | 8 | 2 | 397 | 14 | 449 | 3.26e-56 | 192 |
| MS.gene066493.t1 | MTR_5g024970 | 44.792 | 192 | 103 | 2 | 1 | 190 | 1 | 191 | 5.87e-55 | 182 |
| MS.gene066493.t1 | MTR_5g024970 | 44.792 | 192 | 103 | 2 | 1 | 190 | 1 | 191 | 1.30e-54 | 182 |
| MS.gene066493.t1 | MTR_5g054950 | 27.146 | 431 | 271 | 8 | 6 | 397 | 16 | 442 | 1.42e-53 | 184 |
| MS.gene066493.t1 | MTR_8g006780 | 41.667 | 156 | 91 | 0 | 1 | 156 | 1 | 156 | 2.05e-40 | 147 |
| MS.gene066493.t1 | MTR_8g006780 | 45.399 | 163 | 89 | 0 | 241 | 403 | 175 | 337 | 2.16e-29 | 117 |
| MS.gene066493.t1 | MTR_5g024960 | 45.631 | 103 | 56 | 0 | 304 | 406 | 52 | 154 | 2.05e-27 | 106 |
| MS.gene066493.t1 | MTR_5g024530 | 65.714 | 70 | 24 | 0 | 1 | 70 | 1 | 70 | 1.57e-23 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066493.t1 | AT5G65980 | 55.172 | 406 | 171 | 3 | 1 | 406 | 1 | 395 | 2.00e-160 | 457 |
| MS.gene066493.t1 | AT2G17500 | 51.733 | 404 | 181 | 4 | 1 | 402 | 1 | 392 | 3.71e-156 | 446 |
| MS.gene066493.t1 | AT2G17500 | 51.733 | 404 | 181 | 4 | 1 | 402 | 1 | 392 | 3.71e-156 | 446 |
| MS.gene066493.t1 | AT2G17500 | 51.733 | 404 | 181 | 4 | 1 | 402 | 1 | 392 | 3.71e-156 | 446 |
| MS.gene066493.t1 | AT2G17500 | 51.733 | 404 | 181 | 4 | 1 | 402 | 1 | 392 | 3.71e-156 | 446 |
| MS.gene066493.t1 | AT5G65980 | 54.201 | 369 | 158 | 3 | 1 | 369 | 1 | 358 | 3.60e-143 | 412 |
| MS.gene066493.t1 | AT1G76520 | 41.076 | 409 | 212 | 6 | 1 | 403 | 2 | 387 | 4.40e-111 | 331 |
| MS.gene066493.t1 | AT1G76520 | 41.076 | 409 | 212 | 6 | 1 | 403 | 2 | 387 | 4.40e-111 | 331 |
| MS.gene066493.t1 | AT1G20925 | 40.695 | 403 | 217 | 5 | 1 | 403 | 89 | 469 | 2.46e-110 | 332 |
| MS.gene066493.t1 | AT1G76530 | 39.183 | 416 | 236 | 4 | 1 | 403 | 1 | 412 | 8.36e-93 | 285 |
| MS.gene066493.t1 | AT1G76530 | 39.183 | 416 | 236 | 4 | 1 | 403 | 1 | 412 | 8.36e-93 | 285 |
| MS.gene066493.t1 | AT5G01990 | 31.281 | 406 | 263 | 7 | 2 | 397 | 23 | 422 | 1.60e-57 | 194 |
| MS.gene066493.t1 | AT1G71090 | 27.896 | 423 | 263 | 7 | 13 | 397 | 22 | 440 | 9.28e-55 | 188 |
| MS.gene066493.t1 | AT1G76530 | 44.805 | 154 | 84 | 1 | 1 | 154 | 1 | 153 | 3.25e-41 | 149 |
Find 85 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGGACTCACCTTCTTATT+TGG | 0.108532 | 8.2:-31131158 | MS.gene066493:CDS |
| CACATAAAAGACTTGCTATT+TGG | 0.201172 | 8.2:+31130116 | None:intergenic |
| TTATTTCATGATCAGTATTT+AGG | 0.219920 | 8.2:-31129934 | MS.gene066493:intron |
| GAGCATCTTGTCCAATTATT+AGG | 0.223124 | 8.2:+31129878 | None:intergenic |
| GGTGAAATATAAGGCATTTA+AGG | 0.232295 | 8.2:-31130378 | MS.gene066493:CDS |
| GCTTCTATGATCAGGAAATA+TGG | 0.241447 | 8.2:-31130658 | MS.gene066493:intron |
| CAGTATTTAGGTTTCCTCTT+TGG | 0.244158 | 8.2:-31129922 | MS.gene066493:CDS |
| ATAAGTAGGACTTGAATAAT+TGG | 0.250424 | 8.2:+31131774 | None:intergenic |
| ACTCTAAGGAACCTAATAAT+TGG | 0.257337 | 8.2:-31129889 | MS.gene066493:CDS |
| TTCTTATTTGGAGGGATCCT+TGG | 0.307040 | 8.2:-31131146 | MS.gene066493:CDS |
| ACAAAGTTCGGTGAAATATA+AGG | 0.321958 | 8.2:-31130387 | MS.gene066493:CDS |
| GTTAAAGCGGCTGCAAATTT+AGG | 0.336331 | 8.2:-31129317 | MS.gene066493:CDS |
| TAAGTAGGACTTGAATAATT+GGG | 0.339142 | 8.2:+31131775 | None:intergenic |
| CAGCTATAGCACTCACTCTT+TGG | 0.342513 | 8.2:-31128949 | MS.gene066493:CDS |
| ATTATTGCTTCTTGTTCATC+AGG | 0.344380 | 8.2:-31131074 | MS.gene066493:intron |
| AGCTTGGTGGTATTTACATT+TGG | 0.348845 | 8.2:-31130433 | MS.gene066493:CDS |
| ACTTTCTGATTACAGATTGC+AGG | 0.352245 | 8.2:+31130612 | None:intergenic |
| AGAAACACTCTTTGCAAAAC+TGG | 0.352652 | 8.2:+31131357 | None:intergenic |
| AGACCTTCCACTTTCATGTT+TGG | 0.361956 | 8.2:+31131098 | None:intergenic |
| GACTTACTAATATTCATTGC+AGG | 0.379207 | 8.2:+31129236 | None:intergenic |
| GCTTATATGTCAACTGACTA+TGG | 0.386547 | 8.2:-31131738 | MS.gene066493:CDS |
| TATTTAGGTTTCCTCTTTGG+TGG | 0.388227 | 8.2:-31129919 | MS.gene066493:CDS |
| CTTCTATGATCAGGAAATAT+GGG | 0.396596 | 8.2:-31130657 | MS.gene066493:intron |
| AATCAGAAAGTTACTCCATT+TGG | 0.400391 | 8.2:-31130600 | MS.gene066493:CDS |
| TTGGTGGAGTTAAAACTCTA+AGG | 0.416436 | 8.2:-31129903 | MS.gene066493:CDS |
| AATTTCATATACCTTGTGTA+AGG | 0.421002 | 8.2:+31129516 | None:intergenic |
| GAGTTTCTGCATTAGTATCA+AGG | 0.438055 | 8.2:+31130324 | None:intergenic |
| TAAGGTTGCCACCTAGCAAA+AGG | 0.449383 | 8.2:+31129534 | None:intergenic |
| CCAACTGATTCGACAAAGTT+CGG | 0.449697 | 8.2:-31130399 | MS.gene066493:CDS |
| CAAGACTCCATTCAGTTGCT+AGG | 0.456663 | 8.2:-31129841 | MS.gene066493:CDS |
| TGTTAACTGTTGTAGCTTGG+TGG | 0.460560 | 8.2:-31130446 | MS.gene066493:intron |
| AAGGTGAGTCCGATGTTAAC+CGG | 0.463909 | 8.2:+31131167 | None:intergenic |
| TAATATTCATTGCAGGTGGC+AGG | 0.466987 | 8.2:+31129243 | None:intergenic |
| CTCTTGATGATATGATATCA+TGG | 0.468126 | 8.2:-31131336 | MS.gene066493:intron |
| TTTGGTCAACATTCCTCCTA+TGG | 0.472028 | 8.2:-31128931 | MS.gene066493:CDS |
| GAACTCACAGTAGCAATTGT+TGG | 0.487755 | 8.2:+31130044 | None:intergenic |
| CAAGCATCGTGTGTACCAAA+TGG | 0.488878 | 8.2:+31130585 | None:intergenic |
| GGACTCACCTTCTTATTTGG+AGG | 0.489105 | 8.2:-31131155 | MS.gene066493:CDS |
| ATTGCAGGGATGATTACAAC+TGG | 0.496624 | 8.2:+31130627 | None:intergenic |
| TGCAGAAACTCAACTTCTCA+AGG | 0.501582 | 8.2:-31130312 | MS.gene066493:CDS |
| TTGGTACAGTGGACAGAGCT+TGG | 0.511412 | 8.2:+31130135 | None:intergenic |
| TCAATGCAGGTGGTTTATGC+CGG | 0.513564 | 8.2:-31131186 | MS.gene066493:intron |
| CACATACCCTAGCAACTGAA+TGG | 0.513887 | 8.2:+31129834 | None:intergenic |
| CTTTCTGATTACAGATTGCA+GGG | 0.516869 | 8.2:+31130613 | None:intergenic |
| CCGAACTTTGTCGAATCAGT+TGG | 0.521570 | 8.2:+31130399 | None:intergenic |
| GACTCACCTTCTTATTTGGA+GGG | 0.521703 | 8.2:-31131154 | MS.gene066493:CDS |
| TATTTGGAGGGATCCTTGGA+TGG | 0.523750 | 8.2:-31131142 | MS.gene066493:CDS |
| AAGACTCCATTCAGTTGCTA+GGG | 0.530940 | 8.2:-31129840 | MS.gene066493:intron |
| TCAACACATATTGAAACAAA+GGG | 0.533251 | 8.2:+31129279 | None:intergenic |
| ATCATCAAGTATCAAACCAT+TGG | 0.534119 | 8.2:-31129399 | MS.gene066493:CDS |
| ATCAACACATATTGAAACAA+AGG | 0.537421 | 8.2:+31129278 | None:intergenic |
| CTCCTACTGCACTTATAAGT+AGG | 0.538102 | 8.2:+31131760 | None:intergenic |
| ACATTATTTCTTTCAGAACA+TGG | 0.541048 | 8.2:+31130072 | None:intergenic |
| ATTGAAACAAAGGGTCTAGT+GGG | 0.553785 | 8.2:+31129288 | None:intergenic |
| CTTTCGAAAATCGTTGAACA+AGG | 0.556087 | 8.2:-31131694 | MS.gene066493:intron |
| CTCAAGGGAAATGACAATGT+TGG | 0.557338 | 8.2:-31130296 | MS.gene066493:CDS |
| GCTAAAGCCAAACATGAAAG+TGG | 0.560045 | 8.2:-31131105 | MS.gene066493:CDS |
| AAGGATCCCTCCAAATAAGA+AGG | 0.562391 | 8.2:+31131148 | None:intergenic |
| TATTGAAACAAAGGGTCTAG+TGG | 0.563600 | 8.2:+31129287 | None:intergenic |
| AAACTGGCAAATATAAGTGC+AGG | 0.570953 | 8.2:+31131373 | None:intergenic |
| ATGACTCAGCTGTTTGATGT+AGG | 0.572960 | 8.2:-31129016 | MS.gene066493:CDS |
| TCGAATCAGTTGGTAAGTGA+AGG | 0.575224 | 8.2:+31130409 | None:intergenic |
| GTCCTACTTATAAGTGCAGT+AGG | 0.578351 | 8.2:-31131762 | MS.gene066493:CDS |
| CTTAAGATAATGACCATAGG+AGG | 0.581597 | 8.2:+31128918 | None:intergenic |
| TAGCAATGATGATACTAATG+AGG | 0.582291 | 8.2:+31129375 | None:intergenic |
| AAGTAGGACTTGAATAATTG+GGG | 0.583437 | 8.2:+31131776 | None:intergenic |
| TGGTTTATGCCGGTTAACAT+CGG | 0.585974 | 8.2:-31131176 | MS.gene066493:CDS |
| GCAGAAACTCAACTTCTCAA+GGG | 0.587651 | 8.2:-31130311 | MS.gene066493:CDS |
| ATTAGTATCAAGGTCTGTGT+TGG | 0.593309 | 8.2:+31130334 | None:intergenic |
| CAGGGATGATTACAACTGGA+AGG | 0.596650 | 8.2:+31130631 | None:intergenic |
| AAGGTTGCCACCTAGCAAAA+GGG | 0.597092 | 8.2:+31129535 | None:intergenic |
| TACATCAAACAGCTGAGTCA+TGG | 0.597959 | 8.2:+31129018 | None:intergenic |
| CATCTTAAGATAATGACCAT+AGG | 0.601573 | 8.2:+31128915 | None:intergenic |
| ACTTAACAATTATCCATCCA+AGG | 0.606195 | 8.2:+31131129 | None:intergenic |
| AAGCCAAACATGAAAGTGGA+AGG | 0.609074 | 8.2:-31131101 | MS.gene066493:CDS |
| ATGATACTAATGAGGACCAA+TGG | 0.610796 | 8.2:+31129383 | None:intergenic |
| AGACTTGCTATTTGGTACAG+TGG | 0.616253 | 8.2:+31130124 | None:intergenic |
| TTACTAATATTCATTGCAGG+TGG | 0.618489 | 8.2:+31129239 | None:intergenic |
| CTAGGTGGCAACCTTACACA+AGG | 0.620956 | 8.2:-31129527 | MS.gene066493:intron |
| CCTAGCAAAAGGGTGATGCA+AGG | 0.626441 | 8.2:+31129545 | None:intergenic |
| TGGTAATAATCTTCTTGCAG+CGG | 0.639194 | 8.2:-31131718 | MS.gene066493:CDS |
| CTCACAGTAGCAATTGTTGG+AGG | 0.645417 | 8.2:+31130047 | None:intergenic |
| TTCTATGATCAGGAAATATG+GGG | 0.654339 | 8.2:-31130656 | MS.gene066493:intron |
| AGTACGAGAGTGCTCTAGTG+CGG | 0.660444 | 8.2:+31130562 | None:intergenic |
| GAAACAAAGGGTCTAGTGGG+AGG | 0.660900 | 8.2:+31129291 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATATGTTTAATTATACT+CGG | - | chr8.2:31129098-31129117 | MS.gene066493:intron | 15.0% |
| !! | TGGATAATAATGTAAAAAAA+TGG | - | chr8.2:31130998-31131017 | MS.gene066493:intron | 15.0% |
| !!! | AAGTTATTTCAAATTTACAA+TGG | - | chr8.2:31131536-31131555 | MS.gene066493:intron | 15.0% |
| !!! | ATTGTAAATTTGAAATAACT+TGG | + | chr8.2:31131537-31131556 | None:intergenic | 15.0% |
| !! | AAATACTGATCATGAAATAA+GGG | + | chr8.2:31130795-31130814 | None:intergenic | 20.0% |
| !! | AATTTATGGAATGTATTTGA+GGG | - | chr8.2:31129797-31129816 | MS.gene066493:intron | 20.0% |
| !! | ACTTGTGAAAGTAAATAAAA+TGG | - | chr8.2:31130753-31130772 | MS.gene066493:intron | 20.0% |
| !! | ATATCACGTAATGAAATTAT+TGG | + | chr8.2:31129166-31129185 | None:intergenic | 20.0% |
| !! | ATTGATGAGTTAACAATATA+CGG | + | chr8.2:31129528-31129547 | None:intergenic | 20.0% |
| !! | GAGAGATATTATACAATTTA+TGG | - | chr8.2:31129783-31129802 | MS.gene066493:intron | 20.0% |
| !! | TAAAATGTTAAGATGTACAA+AGG | - | chr8.2:31129748-31129767 | MS.gene066493:intron | 20.0% |
| !! | TAAATACTGATCATGAAATA+AGG | + | chr8.2:31130796-31130815 | None:intergenic | 20.0% |
| !! | TAACTTGGTAAAAATATGTA+TGG | + | chr8.2:31131522-31131541 | None:intergenic | 20.0% |
| !! | TATCACGTAATGAAATTATT+GGG | + | chr8.2:31129165-31129184 | None:intergenic | 20.0% |
| !! | TCTAAGTCAAATAAAATGAA+TGG | + | chr8.2:31130710-31130729 | None:intergenic | 20.0% |
| !! | TTATTTCATGATCAGTATTT+AGG | - | chr8.2:31130795-31130814 | MS.gene066493:intron | 20.0% |
| !!! | ATATCATGGTACAAATTTTT+TGG | - | chr8.2:31129407-31129426 | MS.gene066493:CDS | 20.0% |
| !!! | TTTTATTTGACTTAGATTGT+TGG | - | chr8.2:31130714-31130733 | MS.gene066493:intron | 20.0% |
| !!! | TTTTTATTAGTCATGCAAAA+AGG | + | chr8.2:31131570-31131589 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGAAGTTATTTCA+TGG | - | chr8.2:31131609-31131628 | MS.gene066493:intron | 20.0% |
| ! | AAATCGAAGAATAAAATGTC+AGG | + | chr8.2:31129297-31129316 | None:intergenic | 25.0% |
| ! | AACAAATATGCAAAGTTTCT+AGG | + | chr8.2:31129442-31129461 | None:intergenic | 25.0% |
| ! | AACTTCAACAAAAATATGCA+TGG | + | chr8.2:31131603-31131622 | None:intergenic | 25.0% |
| ! | AATACTGATCATGAAATAAG+GGG | + | chr8.2:31130794-31130813 | None:intergenic | 25.0% |
| ! | AATTTCATATACCTTGTGTA+AGG | + | chr8.2:31131216-31131235 | None:intergenic | 25.0% |
| ! | ACAACAAAAAATCCAATAAC+AGG | + | chr8.2:31131394-31131413 | None:intergenic | 25.0% |
| ! | ACATTTCAATGTGATTATGA+AGG | - | chr8.2:31131686-31131705 | MS.gene066493:intron | 25.0% |
| ! | ATAAGTAGGACTTGAATAAT+TGG | + | chr8.2:31128958-31128977 | None:intergenic | 25.0% |
| ! | ATCAACACATATTGAAACAA+AGG | + | chr8.2:31131454-31131473 | None:intergenic | 25.0% |
| ! | ATTTGAATTGTATACATCGT+CGG | - | chr8.2:31130532-31130551 | MS.gene066493:intron | 25.0% |
| ! | CAATTTATGGAATGTATTTG+AGG | - | chr8.2:31129796-31129815 | MS.gene066493:intron | 25.0% |
| ! | CTGGATGAATTATGAAAATA+AGG | + | chr8.2:31129922-31129941 | None:intergenic | 25.0% |
| ! | GAAATATTAAAAGGAATGAG+AGG | - | chr8.2:31129723-31129742 | MS.gene066493:intron | 25.0% |
| ! | GTAAAAATGTTCATGCAAAT+AGG | + | chr8.2:31131659-31131678 | None:intergenic | 25.0% |
| ! | TAAATATGCAAACGCAAAAA+AGG | - | chr8.2:31130026-31130045 | MS.gene066493:intron | 25.0% |
| ! | TAAGTAGGACTTGAATAATT+GGG | + | chr8.2:31128957-31128976 | None:intergenic | 25.0% |
| ! | TCAACACATATTGAAACAAA+GGG | + | chr8.2:31131453-31131472 | None:intergenic | 25.0% |
| ! | TTGTATAATATCTCTCCAAA+TGG | + | chr8.2:31129779-31129798 | None:intergenic | 25.0% |
| ! | TTTCGTATACAGAAACAAAA+AGG | - | chr8.2:31130509-31130528 | MS.gene066493:intron | 25.0% |
| ! | TTTGCATGACTAATAAAAAG+TGG | - | chr8.2:31131571-31131590 | MS.gene066493:intron | 25.0% |
| !! | AACTTTGCATATTTGTTGAA+TGG | - | chr8.2:31129445-31129464 | MS.gene066493:intron | 25.0% |
| !! | ACATTATTTCTTTCAGAACA+TGG | + | chr8.2:31130660-31130679 | None:intergenic | 25.0% |
| !! | AGTTTTCAGTTATTCTTTTG+TGG | - | chr8.2:31131744-31131763 | MS.gene066493:CDS | 25.0% |
| !! | ATACTCTTTGTTTATTCTTG+TGG | + | chr8.2:31129473-31129492 | None:intergenic | 25.0% |
| !! | TCTTGAAACTTGTTTATGTT+GGG | - | chr8.2:31129194-31129213 | MS.gene066493:intron | 25.0% |
| !! | TTCTTGAAACTTGTTTATGT+TGG | - | chr8.2:31129193-31129212 | MS.gene066493:intron | 25.0% |
| !!! | CTTATTTTCATAATTCATCC+AGG | - | chr8.2:31129920-31129939 | MS.gene066493:CDS | 25.0% |
| !!! | TGGATTTTTTGTTGTTAAAG+CGG | - | chr8.2:31131399-31131418 | MS.gene066493:intron | 25.0% |
| !!! | TTTTTTGCGTTTGCATATTT+AGG | + | chr8.2:31130027-31130046 | None:intergenic | 25.0% |
| AAGTAGGACTTGAATAATTG+GGG | + | chr8.2:31128956-31128975 | None:intergenic | 30.0% | |
| AATCAGAAAGTTACTCCATT+TGG | - | chr8.2:31130129-31130148 | MS.gene066493:CDS | 30.0% | |
| ACTTAACAATTATCCATCCA+AGG | + | chr8.2:31129603-31129622 | None:intergenic | 30.0% | |
| AGAAATGGATACAGATGAAA+AGG | + | chr8.2:31130921-31130940 | None:intergenic | 30.0% | |
| ATAGGTGACTATAACAGAAA+TGG | + | chr8.2:31130936-31130955 | None:intergenic | 30.0% | |
| ATCATCAAGTATCAAACCAT+TGG | - | chr8.2:31131330-31131349 | MS.gene066493:intron | 30.0% | |
| ATGTTAAGATGTACAAAGGT+AGG | - | chr8.2:31129752-31129771 | MS.gene066493:intron | 30.0% | |
| ATTATTGCTTCTTGTTCATC+AGG | - | chr8.2:31129655-31129674 | MS.gene066493:intron | 30.0% | |
| CATCATGAAATGAATATGAG+AGG | + | chr8.2:31130052-31130071 | None:intergenic | 30.0% | |
| CTTCTATGATCAGGAAATAT+GGG | - | chr8.2:31130072-31130091 | MS.gene066493:CDS | 30.0% | |
| GACTTACTAATATTCATTGC+AGG | + | chr8.2:31131496-31131515 | None:intergenic | 30.0% | |
| TAGCAATGATGATACTAATG+AGG | + | chr8.2:31131357-31131376 | None:intergenic | 30.0% | |
| TATCTACGTCTGTATTTCAT+AGG | + | chr8.2:31130954-31130973 | None:intergenic | 30.0% | |
| TATTGTTAACTCATCAATGC+AGG | - | chr8.2:31129530-31129549 | MS.gene066493:CDS | 30.0% | |
| TGATGATAATATACACTGCA+AGG | + | chr8.2:31130486-31130505 | None:intergenic | 30.0% | |
| TTACTAATATTCATTGCAGG+TGG | + | chr8.2:31131493-31131512 | None:intergenic | 30.0% | |
| TTCTATGATCAGGAAATATG+GGG | - | chr8.2:31130073-31130092 | MS.gene066493:CDS | 30.0% | |
| ! | ACAAAGTTCGGTGAAATATA+AGG | - | chr8.2:31130342-31130361 | MS.gene066493:CDS | 30.0% |
| ! | ACTCTAAGGAACCTAATAAT+TGG | - | chr8.2:31130840-31130859 | MS.gene066493:intron | 30.0% |
| ! | CAAGTCTTTTATGTGTAGAA+TGG | - | chr8.2:31130621-31130640 | MS.gene066493:CDS | 30.0% |
| ! | CTCTTGATGATATGATATCA+TGG | - | chr8.2:31129393-31129412 | MS.gene066493:CDS | 30.0% |
| ! | CTTTTCTTACTACCTGTTAT+TGG | - | chr8.2:31131379-31131398 | MS.gene066493:CDS | 30.0% |
| ! | GGTGAAATATAAGGCATTTA+AGG | - | chr8.2:31130351-31130370 | MS.gene066493:CDS | 30.0% |
| ! | TTTTAATGTCGTGAAATTGC+AGG | - | chr8.2:31131301-31131320 | MS.gene066493:intron | 30.0% |
| !! | CACATAAAAGACTTGCTATT+TGG | + | chr8.2:31130616-31130635 | None:intergenic | 30.0% |
| !! | GTTATTCTTTTGTGGTCTTA+TGG | - | chr8.2:31131752-31131771 | MS.gene066493:CDS | 30.0% |
| !!! | GAGTTTTTTGGAACAATTGA+AGG | - | chr8.2:31128921-31128940 | MS.gene066493:CDS | 30.0% |
| !!! | TTTTTTGGAACAATTGAAGG+TGG | - | chr8.2:31128924-31128943 | MS.gene066493:CDS | 30.0% |
| AAACTGGCAAATATAAGTGC+AGG | + | chr8.2:31129359-31129378 | None:intergenic | 35.0% | |
| AACTCATTCTTTGTAGGGAT+GGG | - | chr8.2:31131155-31131174 | MS.gene066493:CDS | 35.0% | |
| ACTTTCTGATTACAGATTGC+AGG | + | chr8.2:31130120-31130139 | None:intergenic | 35.0% | |
| AGAAACACTCTTTGCAAAAC+TGG | + | chr8.2:31129375-31129394 | None:intergenic | 35.0% | |
| AGACTGAACTCATTCTTTGT+AGG | - | chr8.2:31131149-31131168 | MS.gene066493:CDS | 35.0% | |
| ATGATACTAATGAGGACCAA+TGG | + | chr8.2:31131349-31131368 | None:intergenic | 35.0% | |
| ATTAGTATCAAGGTCTGTGT+TGG | + | chr8.2:31130398-31130417 | None:intergenic | 35.0% | |
| ATTGAAACAAAGGGTCTAGT+GGG | + | chr8.2:31131444-31131463 | None:intergenic | 35.0% | |
| CTTTCGAAAATCGTTGAACA+AGG | - | chr8.2:31129035-31129054 | MS.gene066493:intron | 35.0% | |
| CTTTCTGATTACAGATTGCA+GGG | + | chr8.2:31130119-31130138 | None:intergenic | 35.0% | |
| GACTGAACTCATTCTTTGTA+GGG | - | chr8.2:31131150-31131169 | MS.gene066493:CDS | 35.0% | |
| GAGCATCTTGTCCAATTATT+AGG | + | chr8.2:31130854-31130873 | None:intergenic | 35.0% | |
| GAGTTTCTGCATTAGTATCA+AGG | + | chr8.2:31130408-31130427 | None:intergenic | 35.0% | |
| GCTTATATGTCAACTGACTA+TGG | - | chr8.2:31128991-31129010 | MS.gene066493:CDS | 35.0% | |
| GCTTCTATGATCAGGAAATA+TGG | - | chr8.2:31130071-31130090 | MS.gene066493:CDS | 35.0% | |
| GGCGTGAGTGAAATATTAAA+AGG | - | chr8.2:31129714-31129733 | MS.gene066493:intron | 35.0% | |
| TATTGAAACAAAGGGTCTAG+TGG | + | chr8.2:31131445-31131464 | None:intergenic | 35.0% | |
| TCTATATAACACCGACACTT+CGG | + | chr8.2:31131111-31131130 | None:intergenic | 35.0% | |
| TGGTAATAATCTTCTTGCAG+CGG | - | chr8.2:31129011-31129030 | MS.gene066493:CDS | 35.0% | |
| TTCATGATGCTTCTATGATC+AGG | - | chr8.2:31130063-31130082 | MS.gene066493:CDS | 35.0% | |
| TTCTGTTAACTGTTGTAGCT+TGG | - | chr8.2:31130280-31130299 | MS.gene066493:CDS | 35.0% | |
| TTGGTGGAGTTAAAACTCTA+AGG | - | chr8.2:31130826-31130845 | MS.gene066493:intron | 35.0% | |
| ! | ACTGTTTTCATAAGCTATCC+TGG | + | chr8.2:31129941-31129960 | None:intergenic | 35.0% |
| ! | AGCTTGGTGGTATTTACATT+TGG | - | chr8.2:31130296-31130315 | MS.gene066493:CDS | 35.0% |
| ! | CAGTATTTAGGTTTCCTCTT+TGG | - | chr8.2:31130807-31130826 | MS.gene066493:intron | 35.0% |
| ! | GTAACTTAGCATCGAAGTTA+TGG | - | chr8.2:31129677-31129696 | MS.gene066493:intron | 35.0% |
| ! | GTCTTTTATGTGTAGAATGG+TGG | - | chr8.2:31130624-31130643 | MS.gene066493:CDS | 35.0% |
| ! | TATTTAGGTTTCCTCTTTGG+TGG | - | chr8.2:31130810-31130829 | MS.gene066493:intron | 35.0% |
| ! | TTAGCATCGAAGTTATGGTA+TGG | - | chr8.2:31129682-31129701 | MS.gene066493:intron | 35.0% |
| ! | TTTTTCTCTTTGGCGGTAAA+AGG | - | chr8.2:31130192-31130211 | MS.gene066493:intron | 35.0% |
| !! | GAGTCTTGAATCACTTTTAG+TGG | + | chr8.2:31130876-31130895 | None:intergenic | 35.0% |
| !! | TGTCTGGATTTGCTAATTTG+AGG | - | chr8.2:31129822-31129841 | MS.gene066493:intron | 35.0% |
| !!! | CTCGTACTCTTTTTTCTCTT+TGG | - | chr8.2:31130182-31130201 | MS.gene066493:intron | 35.0% |
| !!! | GTACTCTTTTTTCTCTTTGG+CGG | - | chr8.2:31130185-31130204 | MS.gene066493:intron | 35.0% |
| AAGACTCCATTCAGTTGCTA+GGG | - | chr8.2:31130889-31130908 | MS.gene066493:intron | 40.0% | |
| AAGCCAAACATGAAAGTGGA+AGG | - | chr8.2:31129628-31129647 | MS.gene066493:intron | 40.0% | |
| AAGGATCCCTCCAAATAAGA+AGG | + | chr8.2:31129584-31129603 | None:intergenic | 40.0% | |
| AATGTATTTGAGGGTCTGTC+TGG | - | chr8.2:31129806-31129825 | MS.gene066493:intron | 40.0% | |
| AGACCTTCCACTTTCATGTT+TGG | + | chr8.2:31129634-31129653 | None:intergenic | 40.0% | |
| ATAAGACAGACACGTAGACA+TGG | - | chr8.2:31130978-31130997 | MS.gene066493:intron | 40.0% | |
| ATCGGACTCACCTTCTTATT+TGG | - | chr8.2:31129571-31129590 | MS.gene066493:intron | 40.0% | |
| ATGACTCAGCTGTTTGATGT+AGG | - | chr8.2:31131713-31131732 | MS.gene066493:CDS | 40.0% | |
| ATTGCAGGGATGATTACAAC+TGG | + | chr8.2:31130105-31130124 | None:intergenic | 40.0% | |
| CATGTGTGTTCGTTTCATGT+CGG | - | chr8.2:31131038-31131057 | MS.gene066493:intron | 40.0% | |
| CTATATAACACCGACACTTC+GGG | + | chr8.2:31131110-31131129 | None:intergenic | 40.0% | |
| CTCAAGGGAAATGACAATGT+TGG | - | chr8.2:31130433-31130452 | MS.gene066493:CDS | 40.0% | |
| CTCCTACTGCACTTATAAGT+AGG | + | chr8.2:31128972-31128991 | None:intergenic | 40.0% | |
| CTGCAAGGAGTCTTACTATT+TGG | + | chr8.2:31130471-31130490 | None:intergenic | 40.0% | |
| GAACTCACAGTAGCAATTGT+TGG | + | chr8.2:31130688-31130707 | None:intergenic | 40.0% | |
| GAACTCATTCTTTGTAGGGA+TGG | - | chr8.2:31131154-31131173 | MS.gene066493:CDS | 40.0% | |
| GCAGAAACTCAACTTCTCAA+GGG | - | chr8.2:31130418-31130437 | MS.gene066493:CDS | 40.0% | |
| GCTAAAGCCAAACATGAAAG+TGG | - | chr8.2:31129624-31129643 | MS.gene066493:intron | 40.0% | |
| GTCCTACTTATAAGTGCAGT+AGG | - | chr8.2:31128967-31128986 | MS.gene066493:CDS | 40.0% | |
| GTTAAAGCGGCTGCAAATTT+AGG | - | chr8.2:31131412-31131431 | MS.gene066493:intron | 40.0% | |
| TAATATTCATTGCAGGTGGC+AGG | + | chr8.2:31131489-31131508 | None:intergenic | 40.0% | |
| TACATCAAACAGCTGAGTCA+TGG | + | chr8.2:31131714-31131733 | None:intergenic | 40.0% | |
| TGCAGAAACTCAACTTCTCA+AGG | - | chr8.2:31130417-31130436 | MS.gene066493:CDS | 40.0% | |
| TGTACAAAGGTAGGACCATT+TGG | - | chr8.2:31129761-31129780 | MS.gene066493:intron | 40.0% | |
| TGTTAACTCATCAATGCAGG+TGG | - | chr8.2:31129533-31129552 | MS.gene066493:CDS | 40.0% | |
| TGTTAACTGTTGTAGCTTGG+TGG | - | chr8.2:31130283-31130302 | MS.gene066493:CDS | 40.0% | |
| TTTGGTCAACATTCCTCCTA+TGG | - | chr8.2:31131798-31131817 | MS.gene066493:CDS | 40.0% | |
| ! | GACTCACCTTCTTATTTGGA+GGG | - | chr8.2:31129575-31129594 | MS.gene066493:intron | 40.0% |
| ! | TGGTTTATGCCGGTTAACAT+CGG | - | chr8.2:31129553-31129572 | MS.gene066493:CDS | 40.0% |
| ! | TTCTTATTTGGAGGGATCCT+TGG | - | chr8.2:31129583-31129602 | MS.gene066493:intron | 40.0% |
| !! | AGACTTGCTATTTGGTACAG+TGG | + | chr8.2:31130608-31130627 | None:intergenic | 40.0% |
| !! | CCAACTGATTCGACAAAGTT+CGG | - | chr8.2:31130330-31130349 | MS.gene066493:CDS | 40.0% |
| !! | TCGAATCAGTTGGTAAGTGA+AGG | + | chr8.2:31130323-31130342 | None:intergenic | 40.0% |
| !!! | GAGTTTTAACTCCACCAAAG+AGG | + | chr8.2:31130824-31130843 | None:intergenic | 40.0% |
| AAGGTGAGTCCGATGTTAAC+CGG | + | chr8.2:31129565-31129584 | None:intergenic | 45.0% | |
| AAGGTTGCCACCTAGCAAAA+GGG | + | chr8.2:31131197-31131216 | None:intergenic | 45.0% | |
| ATTTCACTCACGCCAAGTAC+CGG | + | chr8.2:31129708-31129727 | None:intergenic | 45.0% | |
| CAAGACTCCATTCAGTTGCT+AGG | - | chr8.2:31130888-31130907 | MS.gene066493:intron | 45.0% | |
| CACATACCCTAGCAACTGAA+TGG | + | chr8.2:31130898-31130917 | None:intergenic | 45.0% | |
| CAGCTATAGCACTCACTCTT+TGG | - | chr8.2:31131780-31131799 | MS.gene066493:CDS | 45.0% | |
| CAGGGATGATTACAACTGGA+AGG | + | chr8.2:31130101-31130120 | None:intergenic | 45.0% | |
| CATCGAAGTTATGGTATGGC+CGG | - | chr8.2:31129686-31129705 | MS.gene066493:intron | 45.0% | |
| CCGAACTTTGTCGAATCAGT+TGG | + | chr8.2:31130333-31130352 | None:intergenic | 45.0% | |
| CTCACAGTAGCAATTGTTGG+AGG | + | chr8.2:31130685-31130704 | None:intergenic | 45.0% | |
| TAAGGTTGCCACCTAGCAAA+AGG | + | chr8.2:31131198-31131217 | None:intergenic | 45.0% | |
| TATTTGGAGGGATCCTTGGA+TGG | - | chr8.2:31129587-31129606 | MS.gene066493:intron | 45.0% | |
| TCAATGCAGGTGGTTTATGC+CGG | - | chr8.2:31129543-31129562 | MS.gene066493:CDS | 45.0% | |
| TGGTCTACAAGCTGCACATT+TGG | + | chr8.2:31130577-31130596 | None:intergenic | 45.0% | |
| TGTCTGATCCGACATATGTC+CGG | - | chr8.2:31131061-31131080 | MS.gene066493:intron | 45.0% | |
| ! | CAAGCATCGTGTGTACCAAA+TGG | + | chr8.2:31130147-31130166 | None:intergenic | 45.0% |
| ! | GGACTCACCTTCTTATTTGG+AGG | - | chr8.2:31129574-31129593 | MS.gene066493:intron | 45.0% |
| CCTAGCAAAAGGGTGATGCA+AGG | + | chr8.2:31131187-31131206 | None:intergenic | 50.0% | |
| CTAGGTGGCAACCTTACACA+AGG | - | chr8.2:31131202-31131221 | MS.gene066493:intron | 50.0% | |
| GAAACAAAGGGTCTAGTGGG+AGG | + | chr8.2:31131441-31131460 | None:intergenic | 50.0% | |
| GTTATGGTATGGCCGGTACT+TGG | - | chr8.2:31129693-31129712 | MS.gene066493:intron | 50.0% | |
| TCGTCTTCAACCCGAAGTGT+CGG | - | chr8.2:31131097-31131116 | MS.gene066493:CDS | 50.0% | |
| TTGAAGACGACCATGTCCAG+TGG | + | chr8.2:31131087-31131106 | None:intergenic | 50.0% | |
| TTGGTACAGTGGACAGAGCT+TGG | + | chr8.2:31130597-31130616 | None:intergenic | 50.0% | |
| ! | CCTTGCATCACCCTTTTGCT+AGG | - | chr8.2:31131184-31131203 | MS.gene066493:intron | 50.0% |
| ! | TGCATCACCCTTTTGCTAGG+TGG | - | chr8.2:31131187-31131206 | MS.gene066493:intron | 50.0% |
| !! | AGTACGAGAGTGCTCTAGTG+CGG | + | chr8.2:31130170-31130189 | None:intergenic | 50.0% |
| ATATGTCCGGCCACTGGACA+TGG | - | chr8.2:31131074-31131093 | MS.gene066493:intron | 55.0% | |
| TCCAGTGGCCGGACATATGT+CGG | + | chr8.2:31131072-31131091 | None:intergenic | 55.0% | |
| AGACGACCATGTCCAGTGGC+CGG | + | chr8.2:31131083-31131102 | None:intergenic | 60.0% | |
| TCCGACATATGTCCGGCCAC+TGG | - | chr8.2:31131068-31131087 | MS.gene066493:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 31128919 | 31131832 | 31128919 | ID=MS.gene066493 |
| chr8.2 | mRNA | 31128919 | 31131832 | 31128919 | ID=MS.gene066493.t1;Parent=MS.gene066493 |
| chr8.2 | exon | 31131695 | 31131832 | 31131695 | ID=MS.gene066493.t1.exon1;Parent=MS.gene066493.t1 |
| chr8.2 | CDS | 31131695 | 31131832 | 31131695 | ID=cds.MS.gene066493.t1;Parent=MS.gene066493.t1 |
| chr8.2 | exon | 31131337 | 31131416 | 31131337 | ID=MS.gene066493.t1.exon2;Parent=MS.gene066493.t1 |
| chr8.2 | CDS | 31131337 | 31131416 | 31131337 | ID=cds.MS.gene066493.t1;Parent=MS.gene066493.t1 |
| chr8.2 | exon | 31131075 | 31131199 | 31131075 | ID=MS.gene066493.t1.exon3;Parent=MS.gene066493.t1 |
| chr8.2 | CDS | 31131075 | 31131199 | 31131075 | ID=cds.MS.gene066493.t1;Parent=MS.gene066493.t1 |
| chr8.2 | exon | 31130545 | 31130666 | 31130545 | ID=MS.gene066493.t1.exon4;Parent=MS.gene066493.t1 |
| chr8.2 | CDS | 31130545 | 31130666 | 31130545 | ID=cds.MS.gene066493.t1;Parent=MS.gene066493.t1 |
| chr8.2 | exon | 31130277 | 31130453 | 31130277 | ID=MS.gene066493.t1.exon5;Parent=MS.gene066493.t1 |
| chr8.2 | CDS | 31130277 | 31130453 | 31130277 | ID=cds.MS.gene066493.t1;Parent=MS.gene066493.t1 |
| chr8.2 | exon | 31130052 | 31130165 | 31130052 | ID=MS.gene066493.t1.exon6;Parent=MS.gene066493.t1 |
| chr8.2 | CDS | 31130052 | 31130165 | 31130052 | ID=cds.MS.gene066493.t1;Parent=MS.gene066493.t1 |
| chr8.2 | exon | 31129841 | 31129941 | 31129841 | ID=MS.gene066493.t1.exon7;Parent=MS.gene066493.t1 |
| chr8.2 | CDS | 31129841 | 31129941 | 31129841 | ID=cds.MS.gene066493.t1;Parent=MS.gene066493.t1 |
| chr8.2 | exon | 31129528 | 31129580 | 31129528 | ID=MS.gene066493.t1.exon8;Parent=MS.gene066493.t1 |
| chr8.2 | CDS | 31129528 | 31129580 | 31129528 | ID=cds.MS.gene066493.t1;Parent=MS.gene066493.t1 |
| chr8.2 | exon | 31129243 | 31129428 | 31129243 | ID=MS.gene066493.t1.exon9;Parent=MS.gene066493.t1 |
| chr8.2 | CDS | 31129243 | 31129428 | 31129243 | ID=cds.MS.gene066493.t1;Parent=MS.gene066493.t1 |
| chr8.2 | exon | 31128919 | 31129043 | 31128919 | ID=MS.gene066493.t1.exon10;Parent=MS.gene066493.t1 |
| chr8.2 | CDS | 31128919 | 31129043 | 31128919 | ID=cds.MS.gene066493.t1;Parent=MS.gene066493.t1 |
| Gene Sequence |
| Protein sequence |
