Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72672.t1 | XP_024639420.1 | 95.5 | 421 | 19 | 0 | 1 | 421 | 1 | 421 | 4.30E-219 | 770.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72672.t1 | Q9FKY4 | 54.8 | 420 | 165 | 2 | 1 | 420 | 1 | 395 | 1.1e-125 | 451.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72672.t1 | G7K1C1 | 92.4 | 421 | 32 | 0 | 1 | 421 | 1 | 421 | 3.7e-212 | 746.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72672 | MS.gene86523 | PPI |
| MS.gene72672 | MS.gene86524 | PPI |
| MS.gene69976 | MS.gene72672 | PPI |
| MS.gene82524 | MS.gene72672 | PPI |
| MS.gene86523 | MS.gene72672 | PPI |
| MS.gene72674 | MS.gene72672 | PPI |
| MS.gene65344 | MS.gene72672 | PPI |
| MS.gene64906 | MS.gene72672 | PPI |
| MS.gene72672 | MS.gene23822 | PPI |
| MS.gene72672 | MS.gene86525 | PPI |
| MS.gene72672 | MS.gene64908 | PPI |
| MS.gene99561 | MS.gene72672 | PPI |
| MS.gene64907 | MS.gene72672 | PPI |
| MS.gene72672 | MS.gene066493 | PPI |
| MS.gene72672 | MS.gene72673 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72672.t1 | MTR_5g024640 | 92.399 | 421 | 32 | 0 | 1 | 421 | 1 | 421 | 0.0 | 789 |
| MS.gene72672.t1 | MTR_5g024660 | 89.524 | 420 | 44 | 0 | 1 | 420 | 1 | 420 | 0.0 | 767 |
| MS.gene72672.t1 | MTR_5g024640 | 92.348 | 379 | 29 | 0 | 1 | 379 | 1 | 379 | 0.0 | 711 |
| MS.gene72672.t1 | MTR_5g024520 | 74.347 | 421 | 42 | 2 | 1 | 421 | 1 | 355 | 0.0 | 601 |
| MS.gene72672.t1 | MTR_5g024640 | 92.000 | 300 | 24 | 0 | 1 | 300 | 1 | 300 | 0.0 | 561 |
| MS.gene72672.t1 | MTR_5g024560 | 90.714 | 280 | 23 | 1 | 142 | 421 | 24 | 300 | 0.0 | 513 |
| MS.gene72672.t1 | MTR_8g073160 | 60.000 | 420 | 127 | 5 | 1 | 420 | 1 | 379 | 1.03e-176 | 498 |
| MS.gene72672.t1 | MTR_5g024970 | 41.898 | 432 | 224 | 6 | 1 | 420 | 1 | 417 | 3.74e-122 | 361 |
| MS.gene72672.t1 | MTR_5g024970 | 39.651 | 459 | 223 | 7 | 1 | 420 | 1 | 444 | 1.03e-116 | 348 |
| MS.gene72672.t1 | MTR_8g072560 | 41.395 | 430 | 214 | 6 | 1 | 419 | 1 | 403 | 6.87e-115 | 342 |
| MS.gene72672.t1 | MTR_5g024580 | 92.169 | 166 | 13 | 0 | 1 | 166 | 1 | 166 | 7.85e-105 | 308 |
| MS.gene72672.t1 | MTR_5g024970 | 40.204 | 393 | 208 | 6 | 1 | 381 | 1 | 378 | 3.11e-102 | 309 |
| MS.gene72672.t1 | MTR_5g024970 | 42.061 | 359 | 182 | 5 | 74 | 420 | 9 | 353 | 5.53e-101 | 305 |
| MS.gene72672.t1 | MTR_8g006780 | 39.810 | 422 | 238 | 4 | 1 | 419 | 1 | 409 | 7.41e-97 | 296 |
| MS.gene72672.t1 | MTR_8g006775 | 35.714 | 420 | 264 | 3 | 1 | 419 | 1 | 415 | 5.99e-92 | 283 |
| MS.gene72672.t1 | MTR_5g024970 | 39.697 | 330 | 172 | 6 | 1 | 318 | 1 | 315 | 3.16e-80 | 250 |
| MS.gene72672.t1 | MTR_5g024970 | 39.103 | 312 | 163 | 6 | 1 | 300 | 1 | 297 | 3.91e-73 | 232 |
| MS.gene72672.t1 | MTR_5g024970 | 42.795 | 229 | 117 | 3 | 1 | 228 | 1 | 216 | 2.80e-61 | 199 |
| MS.gene72672.t1 | MTR_5g024970 | 42.795 | 229 | 117 | 3 | 1 | 228 | 1 | 216 | 6.51e-61 | 199 |
| MS.gene72672.t1 | MTR_7g074190 | 31.206 | 423 | 254 | 7 | 7 | 419 | 26 | 421 | 5.84e-58 | 196 |
| MS.gene72672.t1 | MTR_5g054950 | 28.182 | 440 | 287 | 9 | 7 | 421 | 17 | 452 | 1.23e-55 | 190 |
| MS.gene72672.t1 | MTR_8g006780 | 40.351 | 228 | 129 | 3 | 1 | 228 | 1 | 221 | 6.08e-52 | 177 |
| MS.gene72672.t1 | MTR_8g006780 | 40.212 | 189 | 107 | 1 | 231 | 419 | 157 | 339 | 6.29e-29 | 116 |
| MS.gene72672.t1 | MTR_1g108390 | 26.682 | 446 | 291 | 8 | 7 | 421 | 19 | 459 | 2.04e-51 | 179 |
| MS.gene72672.t1 | MTR_5g024530 | 95.714 | 70 | 3 | 0 | 1 | 70 | 1 | 70 | 3.57e-38 | 135 |
| MS.gene72672.t1 | MTR_5g024960 | 52.885 | 104 | 49 | 0 | 317 | 420 | 51 | 154 | 3.88e-31 | 117 |
| MS.gene72672.t1 | MTR_5g020660 | 74.419 | 43 | 11 | 0 | 3 | 45 | 100 | 142 | 9.80e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72672.t1 | AT5G65980 | 54.762 | 420 | 165 | 2 | 1 | 420 | 1 | 395 | 1.94e-164 | 468 |
| MS.gene72672.t1 | AT2G17500 | 53.207 | 421 | 169 | 4 | 1 | 419 | 1 | 395 | 1.55e-162 | 463 |
| MS.gene72672.t1 | AT2G17500 | 53.207 | 421 | 169 | 4 | 1 | 419 | 1 | 395 | 1.55e-162 | 463 |
| MS.gene72672.t1 | AT2G17500 | 53.207 | 421 | 169 | 4 | 1 | 419 | 1 | 395 | 1.55e-162 | 463 |
| MS.gene72672.t1 | AT2G17500 | 53.207 | 421 | 169 | 4 | 1 | 419 | 1 | 395 | 1.55e-162 | 463 |
| MS.gene72672.t1 | AT5G65980 | 53.826 | 379 | 150 | 2 | 1 | 379 | 1 | 354 | 1.13e-144 | 416 |
| MS.gene72672.t1 | AT1G76520 | 39.059 | 425 | 217 | 7 | 3 | 420 | 1 | 390 | 8.34e-110 | 328 |
| MS.gene72672.t1 | AT1G76520 | 39.059 | 425 | 217 | 7 | 3 | 420 | 1 | 390 | 8.34e-110 | 328 |
| MS.gene72672.t1 | AT1G20925 | 37.767 | 421 | 224 | 7 | 1 | 420 | 89 | 472 | 6.35e-102 | 311 |
| MS.gene72672.t1 | AT1G76530 | 37.385 | 436 | 236 | 7 | 1 | 420 | 1 | 415 | 9.59e-95 | 291 |
| MS.gene72672.t1 | AT1G76530 | 37.385 | 436 | 236 | 7 | 1 | 420 | 1 | 415 | 9.59e-95 | 291 |
| MS.gene72672.t1 | AT5G01990 | 32.512 | 406 | 262 | 7 | 7 | 411 | 28 | 422 | 5.85e-63 | 209 |
| MS.gene72672.t1 | AT1G71090 | 27.316 | 421 | 280 | 8 | 12 | 409 | 21 | 438 | 8.93e-50 | 175 |
| MS.gene72672.t1 | AT1G76530 | 44.910 | 167 | 89 | 2 | 1 | 167 | 1 | 164 | 5.29e-45 | 159 |
Find 81 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTGTTTGGTGTCTTTA+TGG | 0.140203 | 5.4:+15810602 | None:intergenic |
| GTTGGACTCACCTTCTTAAT+TGG | 0.176033 | 5.4:-15811309 | MS.gene72672:CDS |
| AAGCAGCTCATTGAGATTTA+AGG | 0.177124 | 5.4:-15810643 | MS.gene72672:CDS |
| CCTTTCTCAGCGCATATTGC+TGG | 0.274602 | 5.4:+15811002 | None:intergenic |
| GTGCTTTGGATTACTCTAAA+TGG | 0.279594 | 5.4:+15810008 | None:intergenic |
| CAGCCATAGCTCTCACTTCT+TGG | 0.283765 | 5.4:-15809317 | MS.gene72672:CDS |
| ATTATTGCTGCTTGTTCATC+AGG | 0.302286 | 5.4:-15811225 | MS.gene72672:intron |
| TTCAAGGATTTCCTAAAATC+TGG | 0.305654 | 5.4:+15811700 | None:intergenic |
| AGACCTTCCACTTTCAAATT+AGG | 0.311359 | 5.4:+15811249 | None:intergenic |
| GTCTTACTTGTTAGTGCATT+GGG | 0.316858 | 5.4:-15811763 | MS.gene72672:CDS |
| TAGTGCATTGGGAGCTTTCA+TGG | 0.319565 | 5.4:-15811752 | MS.gene72672:CDS |
| ATCTTGAAGTGAAACACTTT+TGG | 0.323759 | 5.4:+15811452 | None:intergenic |
| TGGTTAAGGAACTTAATAAT+TGG | 0.328372 | 5.4:-15810041 | MS.gene72672:CDS |
| CAAAGCACTCTTGAATTACT+TGG | 0.330746 | 5.4:-15809993 | MS.gene72672:CDS |
| TCCTCTTTGGCGCGGTTGAA+TGG | 0.337747 | 5.4:-15810061 | MS.gene72672:CDS |
| CTCATATGCATCTTTCTCTA+TGG | 0.347141 | 5.4:-15810937 | MS.gene72672:CDS |
| CAAGTAATTCAAGAGTGCTT+TGG | 0.369622 | 5.4:+15809994 | None:intergenic |
| TTGGCGCGGTTGAATGGTTA+AGG | 0.376725 | 5.4:-15810055 | MS.gene72672:CDS |
| TTTCCTTCAAGATCTTTGTT+TGG | 0.379155 | 5.4:+15810591 | None:intergenic |
| ACAAGTAAGACTTGAATAAC+TGG | 0.384032 | 5.4:+15811775 | None:intergenic |
| ACAATAAACAATCCAATAAC+AGG | 0.393798 | 5.4:+15809751 | None:intergenic |
| AACTTACCAATACTCATTGC+TGG | 0.425948 | 5.4:+15809649 | None:intergenic |
| CAAACATCGCGTGCACCAAA+TGG | 0.431551 | 5.4:+15810975 | None:intergenic |
| TCTTATAATTTGATAAGTAT+AGG | 0.432637 | 5.4:+15810665 | None:intergenic |
| ACCAATGTATACTGAAACAA+AGG | 0.455002 | 5.4:+15809691 | None:intergenic |
| TGTAGATACTCCCCTTCTAA+AGG | 0.458680 | 5.4:-15810568 | MS.gene72672:CDS |
| TACTGAAACAAAGGATCCAC+TGG | 0.458962 | 5.4:+15809700 | None:intergenic |
| AAGGTGAGTCCAACATTAAC+CGG | 0.459669 | 5.4:+15811318 | None:intergenic |
| AGTCTTACTTGTTAGTGCAT+TGG | 0.460091 | 5.4:-15811764 | MS.gene72672:CDS |
| GTGCTCAGTTATTCTGTTGT+GGG | 0.460284 | 5.4:-15809352 | MS.gene72672:CDS |
| GCTGAGAAAGGAGGTCCATT+TGG | 0.463548 | 5.4:-15810990 | MS.gene72672:CDS |
| ATTGCTGGGATAATTACAAT+TGG | 0.467575 | 5.4:+15811017 | None:intergenic |
| GTAGATACTCCCCTTCTAAA+GGG | 0.470111 | 5.4:-15810567 | MS.gene72672:CDS |
| CTTGGTGGTAACCTCACTGC+AGG | 0.471719 | 5.4:-15809841 | MS.gene72672:CDS |
| GAACTCACTACAGAAATTGC+TGG | 0.472890 | 5.4:+15810196 | None:intergenic |
| CACTTCAAGATATGATATCA+TGG | 0.475301 | 5.4:-15811440 | MS.gene72672:intron |
| TGAATCACATACCTTGTTCA+AGG | 0.477557 | 5.4:+15811684 | None:intergenic |
| CTTGGTCAACATTCCTCTTG+TGG | 0.479125 | 5.4:-15809299 | MS.gene72672:CDS |
| CTTTAATTAACCAGGAAACA+TGG | 0.484143 | 5.4:-15811048 | MS.gene72672:intron |
| GGACTCACCTTCTTAATTGG+AGG | 0.486449 | 5.4:-15811306 | MS.gene72672:CDS |
| CTTTCTCAGCGCATATTGCT+GGG | 0.493209 | 5.4:+15811003 | None:intergenic |
| TTTATACAGGTGGTTTATGC+CGG | 0.503609 | 5.4:-15811337 | MS.gene72672:intron |
| ACACCAAACAAAGATCTTGA+AGG | 0.506701 | 5.4:-15810594 | MS.gene72672:CDS |
| AGTGCTCAGTTATTCTGTTG+TGG | 0.513059 | 5.4:-15809353 | MS.gene72672:CDS |
| ATATTTCGATTGTAGCTTGG+TGG | 0.513697 | 5.4:-15810702 | MS.gene72672:intron |
| TGGTTTATGCCGGTTAATGT+TGG | 0.515810 | 5.4:-15811327 | MS.gene72672:CDS |
| GACTCACCTTCTTAATTGGA+GGG | 0.517607 | 5.4:-15811305 | MS.gene72672:CDS |
| TAAAATCCCTCCAATTAAGA+AGG | 0.522026 | 5.4:+15811299 | None:intergenic |
| TCCTTTGTTTCAGTATACAT+TGG | 0.525819 | 5.4:-15809692 | MS.gene72672:CDS |
| CCAGCAATATGCGCTGAGAA+AGG | 0.531441 | 5.4:-15811002 | MS.gene72672:CDS |
| GGATATTAGTAAAATTACTA+AGG | 0.533486 | 5.4:-15811272 | MS.gene72672:CDS |
| ACTAAGGCCTAATTTGAAAG+TGG | 0.537496 | 5.4:-15811256 | MS.gene72672:CDS |
| TCAGTCTAATGAATTGATGA+AGG | 0.540881 | 5.4:-15810287 | MS.gene72672:CDS |
| ATTGAGATTTAAGGCACTTG+AGG | 0.546011 | 5.4:-15810634 | MS.gene72672:CDS |
| ACCATTCAACCGCGCCAAAG+AGG | 0.558734 | 5.4:+15810060 | None:intergenic |
| TTTAATTAACCAGGAAACAT+GGG | 0.559242 | 5.4:-15811047 | MS.gene72672:intron |
| AGGCCTAATTTGAAAGTGGA+AGG | 0.564939 | 5.4:-15811252 | MS.gene72672:CDS |
| ATGCCACCAGCAATGAGTAT+TGG | 0.565933 | 5.4:-15809655 | MS.gene72672:intron |
| AAAGCACTCTTGAATTACTT+GGG | 0.574422 | 5.4:-15809992 | MS.gene72672:intron |
| CGAAAACACCGTGATAGAAG+TGG | 0.574791 | 5.4:-15810535 | MS.gene72672:CDS |
| AAACTTGAAAATATAAGTGA+AGG | 0.585111 | 5.4:+15811477 | None:intergenic |
| CAACGGTGCCACTTCTATCA+CGG | 0.595633 | 5.4:+15810527 | None:intergenic |
| AATAAGATAATAGCCACAAG+AGG | 0.612170 | 5.4:+15809286 | None:intergenic |
| ATGATGCAGATGAGTGTCAA+TGG | 0.615768 | 5.4:+15809796 | None:intergenic |
| AATTAACCAGGAAACATGGG+AGG | 0.625582 | 5.4:-15811044 | MS.gene72672:intron |
| TAATTACAGCTTTCTCCCAG+TGG | 0.627923 | 5.4:-15809716 | MS.gene72672:CDS |
| GATACATTATGTAGGTACAA+TGG | 0.631901 | 5.4:-15809403 | MS.gene72672:intron |
| TCATCTGCATCATCATAACT+CGG | 0.636536 | 5.4:-15809786 | MS.gene72672:CDS |
| CCAAGCAAAAGTGTGATGCA+AGG | 0.640175 | 5.4:+15809859 | None:intergenic |
| GAGAAAGCTGTAATTAGCCG+CGG | 0.652127 | 5.4:+15809723 | None:intergenic |
| GCAATATGCGCTGAGAAAGG+AGG | 0.652370 | 5.4:-15810999 | MS.gene72672:CDS |
| ATTGTTTATTGTGAAAGCCG+CGG | 0.663100 | 5.4:-15809740 | MS.gene72672:CDS |
| TTTCGGTTTCCTCTTTGGCG+CGG | 0.666266 | 5.4:-15810069 | MS.gene72672:CDS |
| GAGTCTTCAATATAACTCAA+CGG | 0.668737 | 5.4:+15810510 | None:intergenic |
| CTCACTACAGAAATTGCTGG+TGG | 0.681820 | 5.4:+15810199 | None:intergenic |
| TTACCAATACTCATTGCTGG+TGG | 0.682899 | 5.4:+15809652 | None:intergenic |
| ATGGCTCAGCTGTTTGACGT+AGG | 0.688475 | 5.4:-15809384 | MS.gene72672:CDS |
| TGACCAAGAAGTGAGAGCTA+TGG | 0.691891 | 5.4:+15809314 | None:intergenic |
| ACTGAAACAAAGGATCCACT+GGG | 0.692332 | 5.4:+15809701 | None:intergenic |
| ATGATTTCAAGCCTGCAGTG+AGG | 0.729554 | 5.4:+15809830 | None:intergenic |
| CATATGAGAGTGCATTACTG+TGG | 0.758442 | 5.4:+15810952 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAACTTAATCTAAAA+TGG | - | chr5.4:15810005-15810024 | MS.gene72672:CDS | 15.0% |
| !! | TCTTATAATTTGATAAGTAT+AGG | + | chr5.4:15810433-15810452 | None:intergenic | 15.0% |
| !!! | ATTGTTAAATTTGAAACAAA+TGG | + | chr5.4:15810986-15811005 | None:intergenic | 15.0% |
| !!! | GTTAAAATTTTCTAATTCAT+CGG | - | chr5.4:15810695-15810714 | MS.gene72672:intron | 15.0% |
| !!! | TGATTTTTATGAAGAAATTA+AGG | + | chr5.4:15811135-15811154 | None:intergenic | 15.0% |
| !!! | TTAAAATTTTCTAATTCATC+GGG | - | chr5.4:15810696-15810715 | MS.gene72672:intron | 15.0% |
| !! | AAACTTGAAAATATAAGTGA+AGG | + | chr5.4:15809621-15809640 | None:intergenic | 20.0% |
| !! | AAAGAAAGAAAGAAAGAAAA+AGG | + | chr5.4:15810924-15810943 | None:intergenic | 20.0% |
| !! | AGTTTAAACAAATAATTGTG+TGG | + | chr5.4:15811190-15811209 | None:intergenic | 20.0% |
| !! | CATTAAATTCATACAAAAGA+TGG | + | chr5.4:15811537-15811556 | None:intergenic | 20.0% |
| !! | GGATATTAGTAAAATTACTA+AGG | - | chr5.4:15809823-15809842 | MS.gene72672:CDS | 20.0% |
| !! | TAGGAACAACAATATAATAT+AGG | + | chr5.4:15811657-15811676 | None:intergenic | 20.0% |
| !! | TCATATTCTCAAATTATTGT+TGG | + | chr5.4:15810242-15810261 | None:intergenic | 20.0% |
| !! | TGTAAAAATCTATAGACAAT+CGG | - | chr5.4:15811615-15811634 | MS.gene72672:intron | 20.0% |
| !!! | AAAAAGTATATAGCATAATC+TGG | + | chr5.4:15810639-15810658 | None:intergenic | 20.0% |
| !!! | AAATACCATAATCAGTTTTT+CGG | - | chr5.4:15811009-15811028 | MS.gene72672:CDS | 20.0% |
| !!! | AGTAAAAAGTTTTACACTTA+CGG | + | chr5.4:15811496-15811515 | None:intergenic | 20.0% |
| !!! | ATTATCATTGTCTGAAATAA+AGG | + | chr5.4:15810743-15810762 | None:intergenic | 20.0% |
| !!! | CATCTTTTGTATGAATTTAA+TGG | - | chr5.4:15811535-15811554 | MS.gene72672:intron | 20.0% |
| !!! | GAAATACTGTTTTGTTTTTT+TGG | - | chr5.4:15809560-15809579 | MS.gene72672:intron | 20.0% |
| !!! | TAAAATTTTCTAATTCATCG+GGG | - | chr5.4:15810697-15810716 | MS.gene72672:intron | 20.0% |
| !!! | TGTTTATTTCTGATTTATAC+AGG | - | chr5.4:15809745-15809764 | MS.gene72672:CDS | 20.0% |
| ! | AAAAGAAGTAGAGACTTTAA+GGG | + | chr5.4:15811163-15811182 | None:intergenic | 25.0% |
| ! | AACTTAATTCTTTGCAGAAA+TGG | - | chr5.4:15811206-15811225 | MS.gene72672:intron | 25.0% |
| ! | AATGTCTTCTATAAGAAGTA+TGG | - | chr5.4:15810309-15810328 | MS.gene72672:intron | 25.0% |
| ! | AATTCGATGATACATTATGT+AGG | - | chr5.4:15811684-15811703 | MS.gene72672:intron | 25.0% |
| ! | ACAATAAACAATCCAATAAC+AGG | + | chr5.4:15811347-15811366 | None:intergenic | 25.0% |
| ! | ACATAATATAGCATCAAAGT+TGG | - | chr5.4:15809975-15809994 | MS.gene72672:intron | 25.0% |
| ! | ATAATATTTCGATTGTAGCT+TGG | - | chr5.4:15810390-15810409 | MS.gene72672:intron | 25.0% |
| ! | ATATGATATCATGGTACATA+TGG | - | chr5.4:15809664-15809683 | MS.gene72672:CDS | 25.0% |
| ! | CTTCACATTGAAAATGTATT+TGG | + | chr5.4:15809500-15809519 | None:intergenic | 25.0% |
| ! | GAATTATGCTTTAATTAACC+AGG | - | chr5.4:15810039-15810058 | MS.gene72672:CDS | 25.0% |
| ! | TGGTTAAGGAACTTAATAAT+TGG | - | chr5.4:15811054-15811073 | MS.gene72672:intron | 25.0% |
| ! | TGTGAAGAGCAAATATTTAA+CGG | - | chr5.4:15809513-15809532 | MS.gene72672:intron | 25.0% |
| ! | TTTAATTAACCAGGAAACAT+GGG | - | chr5.4:15810048-15810067 | MS.gene72672:CDS | 25.0% |
| !! | AAAGATGGTTTGTAATTGAT+CGG | + | chr5.4:15811522-15811541 | None:intergenic | 25.0% |
| !! | TAACTCACATTTTACTATCA+CGG | - | chr5.4:15809713-15809732 | MS.gene72672:CDS | 25.0% |
| !! | TTTTACTGATCCAAAAGTTA+TGG | - | chr5.4:15811581-15811600 | MS.gene72672:intron | 25.0% |
| !!! | TATCATCGAATTTTGAAGTT+AGG | + | chr5.4:15811676-15811695 | None:intergenic | 25.0% |
| !!! | TTATTTCTGATTTATACAGG+TGG | - | chr5.4:15809748-15809767 | MS.gene72672:CDS | 25.0% |
| AATAAGATAATAGCCACAAG+AGG | + | chr5.4:15811812-15811831 | None:intergenic | 30.0% | |
| ACAAGTAAGACTTGAATAAC+TGG | + | chr5.4:15809323-15809342 | None:intergenic | 30.0% | |
| ACCAATGTATACTGAAACAA+AGG | + | chr5.4:15811407-15811426 | None:intergenic | 30.0% | |
| ATTGCTGGGATAATTACAAT+TGG | + | chr5.4:15810081-15810100 | None:intergenic | 30.0% | |
| CACTTCAAGATATGATATCA+TGG | - | chr5.4:15809655-15809674 | MS.gene72672:intron | 30.0% | |
| CTTTAATTAACCAGGAAACA+TGG | - | chr5.4:15810047-15810066 | MS.gene72672:CDS | 30.0% | |
| GAAAAGAAGTAGAGACTTTA+AGG | + | chr5.4:15811164-15811183 | None:intergenic | 30.0% | |
| GAGTCTTCAATATAACTCAA+CGG | + | chr5.4:15810588-15810607 | None:intergenic | 30.0% | |
| GATACATTATGTAGGTACAA+TGG | - | chr5.4:15811692-15811711 | MS.gene72672:intron | 30.0% | |
| GTGAAGAGCAAATATTTAAC+GGG | - | chr5.4:15809514-15809533 | MS.gene72672:intron | 30.0% | |
| TAAAATCCCTCCAATTAAGA+AGG | + | chr5.4:15809799-15809818 | None:intergenic | 30.0% | |
| TCAGTCTAATGAATTGATGA+AGG | - | chr5.4:15810808-15810827 | MS.gene72672:intron | 30.0% | |
| TTCAAGGATTTCCTAAAATC+TGG | + | chr5.4:15809398-15809417 | None:intergenic | 30.0% | |
| TTTCCTTCAAGATCTTTGTT+TGG | + | chr5.4:15810507-15810526 | None:intergenic | 30.0% | |
| ! | AAAGCACTCTTGAATTACTT+GGG | - | chr5.4:15811103-15811122 | MS.gene72672:intron | 30.0% |
| ! | ATCTTCTTTCACCAGATTTT+AGG | - | chr5.4:15809384-15809403 | MS.gene72672:CDS | 30.0% |
| ! | ATCTTGAAGTGAAACACTTT+TGG | + | chr5.4:15809646-15809665 | None:intergenic | 30.0% |
| ! | TCCTTTGTTTCAGTATACAT+TGG | - | chr5.4:15811403-15811422 | MS.gene72672:intron | 30.0% |
| ! | TCTCAACTATCTTGATTTTC+AGG | - | chr5.4:15810772-15810791 | MS.gene72672:intron | 30.0% |
| ! | TGTCAATCAACCATAACTTT+TGG | + | chr5.4:15811594-15811613 | None:intergenic | 30.0% |
| ! | TTCTTAATTGGAGGGATTTT+AGG | - | chr5.4:15809798-15809817 | MS.gene72672:CDS | 30.0% |
| ! | TTGTCTGAAATAAAGGTTGA+AGG | + | chr5.4:15810736-15810755 | None:intergenic | 30.0% |
| !! | ATCTTTGTTTGGTGTCTTTA+TGG | + | chr5.4:15810496-15810515 | None:intergenic | 30.0% |
| !! | TTTTAGGAAATCCTTGAACA+AGG | - | chr5.4:15809400-15809419 | MS.gene72672:intron | 30.0% |
| !! | TTTTGTACAACTTTTGGAAG+TGG | - | chr5.4:15809289-15809308 | MS.gene72672:CDS | 30.0% |
| AACTTACCAATACTCATTGC+TGG | + | chr5.4:15811449-15811468 | None:intergenic | 35.0% | |
| AAGCAGCTCATTGAGATTTA+AGG | - | chr5.4:15810452-15810471 | MS.gene72672:intron | 35.0% | |
| ACACCAAACAAAGATCTTGA+AGG | - | chr5.4:15810501-15810520 | MS.gene72672:CDS | 35.0% | |
| ACTAAGGCCTAATTTGAAAG+TGG | - | chr5.4:15809839-15809858 | MS.gene72672:CDS | 35.0% | |
| AGACCTTCCACTTTCAAATT+AGG | + | chr5.4:15809849-15809868 | None:intergenic | 35.0% | |
| ATATTTCGATTGTAGCTTGG+TGG | - | chr5.4:15810393-15810412 | MS.gene72672:intron | 35.0% | |
| ATTGTTTATTGTGAAAGCCG+CGG | - | chr5.4:15811355-15811374 | MS.gene72672:intron | 35.0% | |
| CTCATATGCATCTTTCTCTA+TGG | - | chr5.4:15810158-15810177 | MS.gene72672:intron | 35.0% | |
| GAAATAAAGGTTGAAGGACT+AGG | + | chr5.4:15810730-15810749 | None:intergenic | 35.0% | |
| GGAAACCGAAAAACTGATTA+TGG | + | chr5.4:15811017-15811036 | None:intergenic | 35.0% | |
| TAAAGAATACAACCTGCAGA+AGG | + | chr5.4:15809590-15809609 | None:intergenic | 35.0% | |
| TCATCTGCATCATCATAACT+CGG | - | chr5.4:15811309-15811328 | MS.gene72672:CDS | 35.0% | |
| TGAATCACATACCTTGTTCA+AGG | + | chr5.4:15809414-15809433 | None:intergenic | 35.0% | |
| TTTATACAGGTGGTTTATGC+CGG | - | chr5.4:15809758-15809777 | MS.gene72672:CDS | 35.0% | |
| ! | AGTCTTACTTGTTAGTGCAT+TGG | - | chr5.4:15809331-15809350 | MS.gene72672:CDS | 35.0% |
| ! | ATTATTGCTGCTTGTTCATC+AGG | - | chr5.4:15809870-15809889 | MS.gene72672:CDS | 35.0% |
| ! | ATTGAGATTTAAGGCACTTG+AGG | - | chr5.4:15810461-15810480 | MS.gene72672:intron | 35.0% |
| ! | CAAAGCACTCTTGAATTACT+TGG | - | chr5.4:15811102-15811121 | MS.gene72672:intron | 35.0% |
| ! | GTCTTACTTGTTAGTGCATT+GGG | - | chr5.4:15809332-15809351 | MS.gene72672:CDS | 35.0% |
| ! | GTGCTTTGGATTACTCTAAA+TGG | + | chr5.4:15811090-15811109 | None:intergenic | 35.0% |
| !! | AGCTTGGTGGTATTTTCATA+TGG | - | chr5.4:15810406-15810425 | MS.gene72672:intron | 35.0% |
| !! | CAAGTAATTCAAGAGTGCTT+TGG | + | chr5.4:15811104-15811123 | None:intergenic | 35.0% |
| !! | GTTGTCTTTTCCCTTTAGAA+GGG | + | chr5.4:15810541-15810560 | None:intergenic | 35.0% |
| !! | TAATTGGAGGGATTTTAGGA+TGG | - | chr5.4:15809802-15809821 | MS.gene72672:CDS | 35.0% |
| !! | TTGTCTTTTCCCTTTAGAAG+GGG | + | chr5.4:15810540-15810559 | None:intergenic | 35.0% |
| !!! | TTTTTTGGTTTACCTTCTGC+AGG | - | chr5.4:15809575-15809594 | MS.gene72672:intron | 35.0% |
| AAAGCCAAATCGTAAGACCT+CGG | - | chr5.4:15810610-15810629 | MS.gene72672:CDS | 40.0% | |
| AAGGTGAGTCCAACATTAAC+CGG | + | chr5.4:15809780-15809799 | None:intergenic | 40.0% | |
| AATTAACCAGGAAACATGGG+AGG | - | chr5.4:15810051-15810070 | MS.gene72672:CDS | 40.0% | |
| ACTGAAACAAAGGATCCACT+GGG | + | chr5.4:15811397-15811416 | None:intergenic | 40.0% | |
| AGGCCTAATTTGAAAGTGGA+AGG | - | chr5.4:15809843-15809862 | MS.gene72672:CDS | 40.0% | |
| AGTGCTCAGTTATTCTGTTG+TGG | - | chr5.4:15811742-15811761 | MS.gene72672:CDS | 40.0% | |
| ATGATGCAGATGAGTGTCAA+TGG | + | chr5.4:15811302-15811321 | None:intergenic | 40.0% | |
| CATCTTTCTCTATGGCAGTA+AGG | - | chr5.4:15810166-15810185 | MS.gene72672:intron | 40.0% | |
| GAACTCACTACAGAAATTGC+TGG | + | chr5.4:15810902-15810921 | None:intergenic | 40.0% | |
| GACTCACCTTCTTAATTGGA+GGG | - | chr5.4:15809790-15809809 | MS.gene72672:CDS | 40.0% | |
| GTAGATACTCCCCTTCTAAA+GGG | - | chr5.4:15810528-15810547 | MS.gene72672:CDS | 40.0% | |
| GTGCTCAGTTATTCTGTTGT+GGG | - | chr5.4:15811743-15811762 | MS.gene72672:CDS | 40.0% | |
| GTTGGACTCACCTTCTTAAT+TGG | - | chr5.4:15809786-15809805 | MS.gene72672:CDS | 40.0% | |
| TAATTACAGCTTTCTCCCAG+TGG | - | chr5.4:15811379-15811398 | MS.gene72672:intron | 40.0% | |
| TACTGAAACAAAGGATCCAC+TGG | + | chr5.4:15811398-15811417 | None:intergenic | 40.0% | |
| TGTAGATACTCCCCTTCTAA+AGG | - | chr5.4:15810527-15810546 | MS.gene72672:CDS | 40.0% | |
| TTACCAATACTCATTGCTGG+TGG | + | chr5.4:15811446-15811465 | None:intergenic | 40.0% | |
| ! | CATATGAGAGTGCATTACTG+TGG | + | chr5.4:15810146-15810165 | None:intergenic | 40.0% |
| ! | CGTTGTCTTTTCCCTTTAGA+AGG | + | chr5.4:15810542-15810561 | None:intergenic | 40.0% |
| ! | CTTTTCGTACTGCCTGTTAT+TGG | - | chr5.4:15811332-15811351 | MS.gene72672:intron | 40.0% |
| ! | TGGTTTATGCCGGTTAATGT+TGG | - | chr5.4:15809768-15809787 | MS.gene72672:CDS | 40.0% |
| !! | CAGTTTTTCGGTTTCCTCTT+TGG | - | chr5.4:15811021-15811040 | MS.gene72672:CDS | 40.0% |
| !! | GACATTTCTAGTGTCTGACA+TGG | + | chr5.4:15810295-15810314 | None:intergenic | 40.0% |
| AAGCCAAATCGTAAGACCTC+GGG | - | chr5.4:15810611-15810630 | MS.gene72672:CDS | 45.0% | |
| ATGATTTCAAGCCTGCAGTG+AGG | + | chr5.4:15811268-15811287 | None:intergenic | 45.0% | |
| ATGCCACCAGCAATGAGTAT+TGG | - | chr5.4:15811440-15811459 | MS.gene72672:intron | 45.0% | |
| CGAAAACACCGTGATAGAAG+TGG | - | chr5.4:15810560-15810579 | MS.gene72672:CDS | 45.0% | |
| CTCACTACAGAAATTGCTGG+TGG | + | chr5.4:15810899-15810918 | None:intergenic | 45.0% | |
| CTTGGTCAACATTCCTCTTG+TGG | - | chr5.4:15811796-15811815 | MS.gene72672:CDS | 45.0% | |
| CTTTCTCAGCGCATATTGCT+GGG | + | chr5.4:15810095-15810114 | None:intergenic | 45.0% | |
| GAGAAAGCTGTAATTAGCCG+CGG | + | chr5.4:15811375-15811394 | None:intergenic | 45.0% | |
| GGACTCACCTTCTTAATTGG+AGG | - | chr5.4:15809789-15809808 | MS.gene72672:CDS | 45.0% | |
| TAGTGCATTGGGAGCTTTCA+TGG | - | chr5.4:15809343-15809362 | MS.gene72672:CDS | 45.0% | |
| TGACCAAGAAGTGAGAGCTA+TGG | + | chr5.4:15811784-15811803 | None:intergenic | 45.0% | |
| ! | CCAAGCAAAAGTGTGATGCA+AGG | + | chr5.4:15811239-15811258 | None:intergenic | 45.0% |
| ! | CCTTGCATCACACTTTTGCT+TGG | - | chr5.4:15811236-15811255 | MS.gene72672:CDS | 45.0% |
| ! | TGCATCACACTTTTGCTTGG+TGG | - | chr5.4:15811239-15811258 | MS.gene72672:CDS | 45.0% |
| !!! | ATATTTCTAAAATATTTTTT+TGG | - | chr5.4:15809904-15809923 | MS.gene72672:intron | 5.0% |
| !!! | ATTAATACTATATTTAATTT+AGG | + | chr5.4:15809438-15809457 | None:intergenic | 5.0% |
| !!! | TATATACTTTTTTTTTTAAT+TGG | - | chr5.4:15810647-15810666 | MS.gene72672:CDS | 5.0% |
| ATGGCTCAGCTGTTTGACGT+AGG | - | chr5.4:15811711-15811730 | MS.gene72672:CDS | 50.0% | |
| CAAACATCGCGTGCACCAAA+TGG | + | chr5.4:15810123-15810142 | None:intergenic | 50.0% | |
| CAGCCATAGCTCTCACTTCT+TGG | - | chr5.4:15811778-15811797 | MS.gene72672:CDS | 50.0% | |
| CCAGCAATATGCGCTGAGAA+AGG | - | chr5.4:15810093-15810112 | MS.gene72672:intron | 50.0% | |
| CCTTTCTCAGCGCATATTGC+TGG | + | chr5.4:15810096-15810115 | None:intergenic | 50.0% | |
| CGATGTGTCAGTGTCGTGTT+CGG | + | chr5.4:15810216-15810235 | None:intergenic | 50.0% | |
| GCAATATGCGCTGAGAAAGG+AGG | - | chr5.4:15810096-15810115 | MS.gene72672:intron | 50.0% | |
| GCTGAGAAAGGAGGTCCATT+TGG | - | chr5.4:15810105-15810124 | MS.gene72672:intron | 50.0% | |
| TTGGCGCGGTTGAATGGTTA+AGG | - | chr5.4:15811040-15811059 | MS.gene72672:intron | 50.0% | |
| TTTCGGTTTCCTCTTTGGCG+CGG | - | chr5.4:15811026-15811045 | MS.gene72672:CDS | 50.0% | |
| ! | ATAGCATAATCTGGCTCCCG+AGG | + | chr5.4:15810630-15810649 | None:intergenic | 50.0% |
| !! | CAACGGTGCCACTTCTATCA+CGG | + | chr5.4:15810571-15810590 | None:intergenic | 50.0% |
| ACCATTCAACCGCGCCAAAG+AGG | + | chr5.4:15811038-15811057 | None:intergenic | 55.0% | |
| GCTCCCGAGGTCTTACGATT+TGG | + | chr5.4:15810617-15810636 | None:intergenic | 55.0% | |
| TCCTCTTTGGCGCGGTTGAA+TGG | - | chr5.4:15811034-15811053 | MS.gene72672:CDS | 55.0% | |
| ! | CTTGGTGGTAACCTCACTGC+AGG | - | chr5.4:15811254-15811273 | MS.gene72672:CDS | 55.0% |
| GGCAAGCCTCCCATGTTTCC+TGG | + | chr5.4:15810060-15810079 | None:intergenic | 60.0% | |
| !! | GTGTTCGGTGTCGACGTGTC+AGG | + | chr5.4:15810201-15810220 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 15809284 | 15811833 | 15809284 | ID=MS.gene72672 |
| chr5.4 | mRNA | 15809284 | 15811833 | 15809284 | ID=MS.gene72672.t1;Parent=MS.gene72672 |
| chr5.4 | exon | 15811696 | 15811833 | 15811696 | ID=MS.gene72672.t1.exon1;Parent=MS.gene72672.t1 |
| chr5.4 | CDS | 15811696 | 15811833 | 15811696 | ID=cds.MS.gene72672.t1;Parent=MS.gene72672.t1 |
| chr5.4 | exon | 15811441 | 15811520 | 15811441 | ID=MS.gene72672.t1.exon2;Parent=MS.gene72672.t1 |
| chr5.4 | CDS | 15811441 | 15811520 | 15811441 | ID=cds.MS.gene72672.t1;Parent=MS.gene72672.t1 |
| chr5.4 | exon | 15811226 | 15811350 | 15811226 | ID=MS.gene72672.t1.exon3;Parent=MS.gene72672.t1 |
| chr5.4 | CDS | 15811226 | 15811350 | 15811226 | ID=cds.MS.gene72672.t1;Parent=MS.gene72672.t1 |
| chr5.4 | exon | 15810935 | 15811056 | 15810935 | ID=MS.gene72672.t1.exon4;Parent=MS.gene72672.t1 |
| chr5.4 | CDS | 15810935 | 15811056 | 15810935 | ID=cds.MS.gene72672.t1;Parent=MS.gene72672.t1 |
| chr5.4 | exon | 15810497 | 15810709 | 15810497 | ID=MS.gene72672.t1.exon5;Parent=MS.gene72672.t1 |
| chr5.4 | CDS | 15810497 | 15810709 | 15810497 | ID=cds.MS.gene72672.t1;Parent=MS.gene72672.t1 |
| chr5.4 | exon | 15810204 | 15810323 | 15810204 | ID=MS.gene72672.t1.exon6;Parent=MS.gene72672.t1 |
| chr5.4 | CDS | 15810204 | 15810323 | 15810204 | ID=cds.MS.gene72672.t1;Parent=MS.gene72672.t1 |
| chr5.4 | exon | 15809993 | 15810093 | 15809993 | ID=MS.gene72672.t1.exon7;Parent=MS.gene72672.t1 |
| chr5.4 | CDS | 15809993 | 15810093 | 15809993 | ID=cds.MS.gene72672.t1;Parent=MS.gene72672.t1 |
| chr5.4 | exon | 15809656 | 15809894 | 15809656 | ID=MS.gene72672.t1.exon8;Parent=MS.gene72672.t1 |
| chr5.4 | CDS | 15809656 | 15809894 | 15809656 | ID=cds.MS.gene72672.t1;Parent=MS.gene72672.t1 |
| chr5.4 | exon | 15809284 | 15809411 | 15809284 | ID=MS.gene72672.t1.exon9;Parent=MS.gene72672.t1 |
| chr5.4 | CDS | 15809284 | 15809411 | 15809284 | ID=cds.MS.gene72672.t1;Parent=MS.gene72672.t1 |
| Gene Sequence |
| Protein sequence |
