Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86525.t1 | XP_024639420.1 | 95.2 | 421 | 20 | 0 | 1 | 421 | 1 | 421 | 9.70E-219 | 769.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86525.t1 | Q9FKY4 | 54.5 | 420 | 166 | 2 | 1 | 420 | 1 | 395 | 3.1e-125 | 449.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86525.t1 | G7K1C1 | 92.6 | 421 | 31 | 0 | 1 | 421 | 1 | 421 | 7.5e-213 | 749.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23822 | MS.gene86525 | PPI |
| MS.gene82524 | MS.gene86525 | PPI |
| MS.gene86525 | MS.gene23822 | PPI |
| MS.gene72674 | MS.gene86525 | PPI |
| MS.gene65344 | MS.gene86525 | PPI |
| MS.gene066493 | MS.gene86525 | PPI |
| MS.gene64906 | MS.gene86525 | PPI |
| MS.gene86523 | MS.gene86525 | PPI |
| MS.gene64908 | MS.gene86525 | PPI |
| MS.gene86524 | MS.gene86525 | PPI |
| MS.gene99561 | MS.gene86525 | PPI |
| MS.gene64907 | MS.gene86525 | PPI |
| MS.gene72672 | MS.gene86525 | PPI |
| MS.gene69976 | MS.gene86525 | PPI |
| MS.gene72673 | MS.gene86525 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86525.t1 | MTR_5g024640 | 92.637 | 421 | 31 | 0 | 1 | 421 | 1 | 421 | 0.0 | 793 |
| MS.gene86525.t1 | MTR_5g024660 | 89.286 | 420 | 45 | 0 | 1 | 420 | 1 | 420 | 0.0 | 766 |
| MS.gene86525.t1 | MTR_5g024640 | 92.348 | 379 | 29 | 0 | 1 | 379 | 1 | 379 | 0.0 | 712 |
| MS.gene86525.t1 | MTR_5g024520 | 74.584 | 421 | 41 | 2 | 1 | 421 | 1 | 355 | 0.0 | 604 |
| MS.gene86525.t1 | MTR_5g024640 | 91.667 | 300 | 25 | 0 | 1 | 300 | 1 | 300 | 0.0 | 561 |
| MS.gene86525.t1 | MTR_5g024560 | 90.357 | 280 | 24 | 1 | 142 | 421 | 24 | 300 | 0.0 | 511 |
| MS.gene86525.t1 | MTR_8g073160 | 59.762 | 420 | 128 | 5 | 1 | 420 | 1 | 379 | 7.13e-176 | 496 |
| MS.gene86525.t1 | MTR_5g024970 | 42.361 | 432 | 222 | 6 | 1 | 420 | 1 | 417 | 3.94e-123 | 363 |
| MS.gene86525.t1 | MTR_5g024970 | 40.087 | 459 | 221 | 7 | 1 | 420 | 1 | 444 | 1.26e-117 | 350 |
| MS.gene86525.t1 | MTR_8g072560 | 41.628 | 430 | 213 | 6 | 1 | 419 | 1 | 403 | 2.15e-115 | 343 |
| MS.gene86525.t1 | MTR_5g024580 | 92.169 | 166 | 13 | 0 | 1 | 166 | 1 | 166 | 8.95e-105 | 307 |
| MS.gene86525.t1 | MTR_5g024970 | 40.458 | 393 | 207 | 6 | 1 | 381 | 1 | 378 | 1.93e-102 | 309 |
| MS.gene86525.t1 | MTR_5g024970 | 42.618 | 359 | 180 | 5 | 74 | 420 | 9 | 353 | 6.67e-102 | 307 |
| MS.gene86525.t1 | MTR_8g006780 | 40.284 | 422 | 236 | 4 | 1 | 419 | 1 | 409 | 5.90e-97 | 296 |
| MS.gene86525.t1 | MTR_8g006775 | 35.714 | 420 | 264 | 3 | 1 | 419 | 1 | 415 | 6.19e-92 | 283 |
| MS.gene86525.t1 | MTR_5g024970 | 39.697 | 330 | 172 | 6 | 1 | 318 | 1 | 315 | 8.71e-80 | 249 |
| MS.gene86525.t1 | MTR_5g024970 | 39.103 | 312 | 163 | 6 | 1 | 300 | 1 | 297 | 1.45e-72 | 231 |
| MS.gene86525.t1 | MTR_5g024970 | 42.795 | 229 | 117 | 3 | 1 | 228 | 1 | 216 | 3.09e-61 | 199 |
| MS.gene86525.t1 | MTR_5g024970 | 42.795 | 229 | 117 | 3 | 1 | 228 | 1 | 216 | 6.72e-61 | 199 |
| MS.gene86525.t1 | MTR_7g074190 | 30.969 | 423 | 255 | 7 | 7 | 419 | 26 | 421 | 3.66e-57 | 194 |
| MS.gene86525.t1 | MTR_5g054950 | 28.409 | 440 | 286 | 9 | 7 | 421 | 17 | 452 | 3.47e-56 | 192 |
| MS.gene86525.t1 | MTR_1g108390 | 26.906 | 446 | 290 | 8 | 7 | 421 | 19 | 459 | 5.77e-52 | 181 |
| MS.gene86525.t1 | MTR_8g006780 | 40.351 | 228 | 129 | 3 | 1 | 228 | 1 | 221 | 7.92e-52 | 177 |
| MS.gene86525.t1 | MTR_8g006780 | 40.741 | 189 | 106 | 1 | 231 | 419 | 157 | 339 | 6.74e-29 | 115 |
| MS.gene86525.t1 | MTR_5g024530 | 95.714 | 70 | 3 | 0 | 1 | 70 | 1 | 70 | 2.98e-38 | 135 |
| MS.gene86525.t1 | MTR_5g024960 | 54.808 | 104 | 47 | 0 | 317 | 420 | 51 | 154 | 1.89e-32 | 120 |
| MS.gene86525.t1 | MTR_5g020660 | 74.419 | 43 | 11 | 0 | 3 | 45 | 100 | 142 | 9.34e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86525.t1 | AT5G65980 | 54.524 | 420 | 166 | 2 | 1 | 420 | 1 | 395 | 5.92e-164 | 466 |
| MS.gene86525.t1 | AT2G17500 | 52.969 | 421 | 170 | 4 | 1 | 419 | 1 | 395 | 1.08e-161 | 461 |
| MS.gene86525.t1 | AT2G17500 | 52.969 | 421 | 170 | 4 | 1 | 419 | 1 | 395 | 1.08e-161 | 461 |
| MS.gene86525.t1 | AT2G17500 | 52.969 | 421 | 170 | 4 | 1 | 419 | 1 | 395 | 1.08e-161 | 461 |
| MS.gene86525.t1 | AT2G17500 | 52.969 | 421 | 170 | 4 | 1 | 419 | 1 | 395 | 1.08e-161 | 461 |
| MS.gene86525.t1 | AT5G65980 | 53.298 | 379 | 152 | 2 | 1 | 379 | 1 | 354 | 3.05e-143 | 413 |
| MS.gene86525.t1 | AT1G76520 | 39.294 | 425 | 216 | 7 | 3 | 420 | 1 | 390 | 8.09e-111 | 331 |
| MS.gene86525.t1 | AT1G76520 | 39.294 | 425 | 216 | 7 | 3 | 420 | 1 | 390 | 8.09e-111 | 331 |
| MS.gene86525.t1 | AT1G20925 | 37.767 | 421 | 224 | 7 | 1 | 420 | 89 | 472 | 1.83e-101 | 310 |
| MS.gene86525.t1 | AT1G76530 | 37.241 | 435 | 238 | 7 | 1 | 420 | 1 | 415 | 4.51e-95 | 291 |
| MS.gene86525.t1 | AT1G76530 | 37.241 | 435 | 238 | 7 | 1 | 420 | 1 | 415 | 4.51e-95 | 291 |
| MS.gene86525.t1 | AT5G01990 | 32.020 | 406 | 264 | 7 | 7 | 411 | 28 | 422 | 1.09e-61 | 206 |
| MS.gene86525.t1 | AT1G71090 | 28.132 | 423 | 274 | 8 | 12 | 409 | 21 | 438 | 1.17e-49 | 175 |
| MS.gene86525.t1 | AT1G76530 | 44.910 | 167 | 89 | 2 | 1 | 167 | 1 | 164 | 5.51e-45 | 159 |
Find 77 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTGTTTGGTGTCTTTA+TGG | 0.140203 | 5.1:+15204394 | None:intergenic |
| GTTGGACTCACCTTCTTAAT+TGG | 0.176033 | 5.1:-15205136 | MS.gene86525:CDS |
| AGACCTTCTACTTTCAAATT+AGG | 0.276363 | 5.1:+15205076 | None:intergenic |
| ATTATTGCTGCTTGTTCATC+TGG | 0.280353 | 5.1:-15205052 | MS.gene86525:intron |
| CAGCCATAGCTCTCACTTCT+TGG | 0.283765 | 5.1:-15203097 | MS.gene86525:CDS |
| TTCAAGGATTTCCTAAAATC+TGG | 0.305654 | 5.1:+15205559 | None:intergenic |
| CATAGCACTCTTGAATTACT+TGG | 0.315039 | 5.1:-15203773 | MS.gene86525:CDS |
| GTGCTATGGATTACTCTAAA+TGG | 0.315267 | 5.1:+15203788 | None:intergenic |
| ATCTTGAAGTGAAACACTTT+TGG | 0.323759 | 5.1:+15205309 | None:intergenic |
| TGGTTAAGGAACTTAATAAT+TGG | 0.328372 | 5.1:-15203821 | MS.gene86525:CDS |
| TCCTCTTTGGCGCGGTTGAA+TGG | 0.337747 | 5.1:-15203841 | MS.gene86525:CDS |
| CTCATATGCATCTTTCTCTA+TGG | 0.347141 | 5.1:-15204729 | MS.gene86525:CDS |
| AAGCAGCTCATTGAGATATA+AGG | 0.356811 | 5.1:-15204435 | MS.gene86525:CDS |
| CCTTTCTCAGCACATATTGC+TGG | 0.361228 | 5.1:+15204794 | None:intergenic |
| GTCCTACTTGTTAGTGCATT+GGG | 0.362882 | 5.1:-15205622 | MS.gene86525:CDS |
| AAGGTGAGTCCAACATTAAC+AGG | 0.375380 | 5.1:+15205145 | None:intergenic |
| TTGGCGCGGTTGAATGGTTA+AGG | 0.376725 | 5.1:-15203835 | MS.gene86525:CDS |
| TTTCCTTCAAGATCTTTGTT+TGG | 0.379155 | 5.1:+15204383 | None:intergenic |
| ACAATAAACAATCCAATAAC+AGG | 0.393798 | 5.1:+15203531 | None:intergenic |
| ACAAGTAGGACTTGAATAAC+TGG | 0.406530 | 5.1:+15205634 | None:intergenic |
| AACTTACCAATACTCATTGC+TGG | 0.425948 | 5.1:+15203429 | None:intergenic |
| CAAACATCGCGTGCACCAAA+TGG | 0.431551 | 5.1:+15204767 | None:intergenic |
| TCTTATAATTTGATAAGTAT+AGG | 0.432637 | 5.1:+15204457 | None:intergenic |
| AGGCCTAATTTGAAAGTAGA+AGG | 0.442410 | 5.1:-15205079 | MS.gene86525:CDS |
| TGAATCACATACCTTGTTCA+AGG | 0.444141 | 5.1:+15205543 | None:intergenic |
| ACCAATGTATACTGAAACAA+AGG | 0.455002 | 5.1:+15203471 | None:intergenic |
| TGTAGATACTCCCCTTCTAA+AGG | 0.458680 | 5.1:-15204360 | MS.gene86525:CDS |
| TACTGAAACAAAGGATCCAC+TGG | 0.458962 | 5.1:+15203480 | None:intergenic |
| GTAGATACTCCCCTTCTAAA+GGG | 0.470111 | 5.1:-15204359 | MS.gene86525:CDS |
| CTTGGTGGTAACCTCACTGC+AGG | 0.471719 | 5.1:-15203621 | MS.gene86525:CDS |
| GAACTCACTACAGAAATTGC+TGG | 0.472890 | 5.1:+15203988 | None:intergenic |
| AGTCCTACTTGTTAGTGCAT+TGG | 0.473572 | 5.1:-15205623 | MS.gene86525:CDS |
| ATTGCTGGGATAATTACAAT+TGG | 0.474607 | 5.1:+15204809 | None:intergenic |
| CACTTCAAGATATGATATCA+TGG | 0.475301 | 5.1:-15205297 | MS.gene86525:intron |
| CTTGGTCAACATTCCTCTTG+TGG | 0.479125 | 5.1:-15203079 | MS.gene86525:CDS |
| GGACTCACCTTCTTAATTGG+AGG | 0.488484 | 5.1:-15205133 | MS.gene86525:CDS |
| CTTTAATCAACCAGGAAACA+TGG | 0.498531 | 5.1:-15204840 | MS.gene86525:intron |
| GCTGAGAAAGGAGGTCCATT+TGG | 0.504858 | 5.1:-15204782 | MS.gene86525:CDS |
| ACACCAAACAAAGATCTTGA+AGG | 0.506701 | 5.1:-15204386 | MS.gene86525:CDS |
| ATATTTCGATTGTAGCTTGG+TGG | 0.513697 | 5.1:-15204494 | MS.gene86525:intron |
| TAAAATTCCTCCAATTAAGA+AGG | 0.522026 | 5.1:+15205126 | None:intergenic |
| TCCTTTGTTTCAGTATACAT+TGG | 0.525819 | 5.1:-15203472 | MS.gene86525:CDS |
| TGGTTTATGCCTGTTAATGT+TGG | 0.526823 | 5.1:-15205154 | MS.gene86525:CDS |
| CTTTCTCAGCACATATTGCT+GGG | 0.527070 | 5.1:+15204795 | None:intergenic |
| GGATATTAGTAAAATTACTA+AGG | 0.533486 | 5.1:-15205099 | MS.gene86525:CDS |
| CAAGTAATTCAAGAGTGCTA+TGG | 0.539664 | 5.1:+15203774 | None:intergenic |
| CCAGCAATATGTGCTGAGAA+AGG | 0.551489 | 5.1:-15204794 | MS.gene86525:CDS |
| ATGCCACCAGCAATGAGTAT+TGG | 0.553714 | 5.1:-15203435 | MS.gene86525:intron |
| ACCATTCAACCGCGCCAAAG+AGG | 0.558734 | 5.1:+15203840 | None:intergenic |
| TCAGTCTAACGAATTGATGA+AGG | 0.563809 | 5.1:-15204079 | MS.gene86525:CDS |
| AGTGTTCAGTTATTCTGTTG+TGG | 0.570064 | 5.1:-15203133 | MS.gene86525:CDS |
| ATAGCACTCTTGAATTACTT+GGG | 0.574422 | 5.1:-15203772 | MS.gene86525:intron |
| AAACTTGAAAATATAAGTGA+AGG | 0.585111 | 5.1:+15205334 | None:intergenic |
| TGAAAACACCGTGATAGAAG+TGG | 0.595584 | 5.1:-15204327 | MS.gene86525:CDS |
| CAACGGTGCCACTTCTATCA+CGG | 0.595633 | 5.1:+15204319 | None:intergenic |
| ATTGAGATATAAGGCACTTG+AGG | 0.606982 | 5.1:-15204426 | MS.gene86525:CDS |
| AATAAGATAATAGCCACAAG+AGG | 0.612170 | 5.1:+15203066 | None:intergenic |
| ATGATGCAGATGAGTGTCAA+TGG | 0.615768 | 5.1:+15203576 | None:intergenic |
| CTCCCAATGCACTAACAAGT+AGG | 0.625966 | 5.1:+15205620 | None:intergenic |
| TTTAATCAACCAGGAAACAT+GGG | 0.626288 | 5.1:-15204839 | MS.gene86525:intron |
| TAATTACAGCTTTCTCCCAG+TGG | 0.627923 | 5.1:-15203496 | MS.gene86525:CDS |
| GATACATTATGTAGGTACAA+TGG | 0.631901 | 5.1:-15203183 | MS.gene86525:intron |
| TCATCTGCATCATCATAACT+CGG | 0.636536 | 5.1:-15203566 | MS.gene86525:CDS |
| CCAAGCAAAAGTGTGATGCA+AGG | 0.640175 | 5.1:+15203639 | None:intergenic |
| GAGAAAGCTGTAATTAGCCG+CGG | 0.652127 | 5.1:+15203503 | None:intergenic |
| ATTGTTTATTGTGAAAGCCG+CGG | 0.663100 | 5.1:-15203520 | MS.gene86525:CDS |
| TTTCGGTTTCCTCTTTGGCG+CGG | 0.666266 | 5.1:-15203849 | MS.gene86525:CDS |
| GAGTCTTCAATATAACTCAA+CGG | 0.668737 | 5.1:+15204302 | None:intergenic |
| GCAATATGTGCTGAGAAAGG+AGG | 0.672555 | 5.1:-15204791 | MS.gene86525:CDS |
| AATCAACCAGGAAACATGGG+AGG | 0.679433 | 5.1:-15204836 | MS.gene86525:intron |
| CTCACTACAGAAATTGCTGG+TGG | 0.681820 | 5.1:+15203991 | None:intergenic |
| TTACCAATACTCATTGCTGG+TGG | 0.682899 | 5.1:+15203432 | None:intergenic |
| ATGGCTCAGCTGTTTGACGT+AGG | 0.688475 | 5.1:-15203164 | MS.gene86525:CDS |
| TGACCAAGAAGTGAGAGCTA+TGG | 0.691891 | 5.1:+15203094 | None:intergenic |
| ACTGAAACAAAGGATCCACT+GGG | 0.692332 | 5.1:+15203481 | None:intergenic |
| ATGATTTCAAGCCTGCAGTG+AGG | 0.729554 | 5.1:+15203610 | None:intergenic |
| CATATGAGAGTGCATTACTG+TGG | 0.758442 | 5.1:+15204744 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAGATCATTTAATGT+TGG | - | chr5.1:15203513-15203532 | MS.gene86525:CDS | 15.0% |
| !! | ATGAAAAACTTAATCTAAAA+TGG | - | chr5.1:15203852-15203871 | MS.gene86525:CDS | 15.0% |
| !! | TCTTATAATTTGATAAGTAT+AGG | + | chr5.1:15204280-15204299 | None:intergenic | 15.0% |
| !!! | ATTGTTAAATTTGAAACAAA+TGG | + | chr5.1:15204845-15204864 | None:intergenic | 15.0% |
| !! | AAACTTGAAAATATAAGTGA+AGG | + | chr5.1:15203403-15203422 | None:intergenic | 20.0% |
| !! | AAAGAAAGAAAGAAAGAAAA+AGG | + | chr5.1:15204771-15204790 | None:intergenic | 20.0% |
| !! | AGAATAAACAAATTGATTAC+TGG | + | chr5.1:15203548-15203567 | None:intergenic | 20.0% |
| !! | AGTTTAAACAAATAATTGTG+TGG | + | chr5.1:15205049-15205068 | None:intergenic | 20.0% |
| !! | ATTATTATTGACGACAAATT+CGG | + | chr5.1:15203491-15203510 | None:intergenic | 20.0% |
| !! | CATTAAATTCATACAAAAGA+TGG | + | chr5.1:15205396-15205415 | None:intergenic | 20.0% |
| !! | GGATATTAGTAAAATTACTA+AGG | - | chr5.1:15203635-15203654 | MS.gene86525:CDS | 20.0% |
| !! | TAGGAACAACAATATAATAT+AGG | + | chr5.1:15205516-15205535 | None:intergenic | 20.0% |
| !! | TCATATTCTCAAATTATTGT+TGG | + | chr5.1:15204089-15204108 | None:intergenic | 20.0% |
| !! | TTGTTTATTCTGATTTATAC+AGG | - | chr5.1:15203557-15203576 | MS.gene86525:CDS | 20.0% |
| !!! | AAAAAGTATATAGCATAATC+TGG | + | chr5.1:15204486-15204505 | None:intergenic | 20.0% |
| !!! | AAATACCATAATCAGTTTTT+CGG | - | chr5.1:15204868-15204887 | MS.gene86525:intron | 20.0% |
| !!! | ATTATCATTGTCTGAAATAA+AGG | + | chr5.1:15204590-15204609 | None:intergenic | 20.0% |
| !!! | CATCTTTTGTATGAATTTAA+TGG | - | chr5.1:15205394-15205413 | MS.gene86525:intron | 20.0% |
| !!! | GTTAGAATTTTCTAATTCAT+CGG | - | chr5.1:15204542-15204561 | MS.gene86525:intron | 20.0% |
| !!! | TGGTTTTTATGAAGAAATTA+AGG | + | chr5.1:15204994-15205013 | None:intergenic | 20.0% |
| !!! | TGTAAAAAGTTTTACACTTA+CGG | + | chr5.1:15205355-15205374 | None:intergenic | 20.0% |
| !!! | TTAGAATTTTCTAATTCATC+GGG | - | chr5.1:15204543-15204562 | MS.gene86525:intron | 20.0% |
| !!! | TTTTTTAATTTACCTTTTGC+AGG | - | chr5.1:15203357-15203376 | MS.gene86525:intron | 20.0% |
| ! | AACTTAATTCTTTGCAGAAA+TGG | - | chr5.1:15205065-15205084 | MS.gene86525:CDS | 25.0% |
| ! | AATTCGATGATACATTATGT+AGG | - | chr5.1:15205543-15205562 | MS.gene86525:intron | 25.0% |
| ! | AATTTATGCTTTAATCAACC+AGG | - | chr5.1:15203886-15203905 | MS.gene86525:intron | 25.0% |
| ! | ACAATAAACAATCCAATAAC+AGG | + | chr5.1:15205206-15205225 | None:intergenic | 25.0% |
| ! | ATAATATTTCGATTGTAGCT+TGG | - | chr5.1:15204237-15204256 | MS.gene86525:intron | 25.0% |
| ! | ATATGATATCATGGTACATA+TGG | - | chr5.1:15203446-15203465 | MS.gene86525:CDS | 25.0% |
| ! | GAAAAGAAGTAGAAACTTTA+AGG | + | chr5.1:15205023-15205042 | None:intergenic | 25.0% |
| ! | TAAAATTCCTCCAATTAAGA+AGG | + | chr5.1:15203611-15203630 | None:intergenic | 25.0% |
| ! | TGGTTAAGGAACTTAATAAT+TGG | - | chr5.1:15204913-15204932 | MS.gene86525:intron | 25.0% |
| ! | TTTATTCTGATTTATACAGG+TGG | - | chr5.1:15203560-15203579 | MS.gene86525:CDS | 25.0% |
| !! | TAGAAACTTTAAGGACTATT+TGG | + | chr5.1:15205014-15205033 | None:intergenic | 25.0% |
| !! | TAGAATTTTCTAATTCATCG+GGG | - | chr5.1:15204544-15204563 | MS.gene86525:intron | 25.0% |
| !! | TTCTTAATTGGAGGAATTTT+AGG | - | chr5.1:15203610-15203629 | MS.gene86525:CDS | 25.0% |
| !!! | TATCATCGAATTTTGAAGTT+AGG | + | chr5.1:15205535-15205554 | None:intergenic | 25.0% |
| AATAAGATAATAGCCACAAG+AGG | + | chr5.1:15205671-15205690 | None:intergenic | 30.0% | |
| ACCAATGTATACTGAAACAA+AGG | + | chr5.1:15205266-15205285 | None:intergenic | 30.0% | |
| AGACCTTCTACTTTCAAATT+AGG | + | chr5.1:15203661-15203680 | None:intergenic | 30.0% | |
| ATAGCACTCTTGAATTACTT+GGG | - | chr5.1:15204962-15204981 | MS.gene86525:intron | 30.0% | |
| ATGCATAAGCAAAATCTATG+TGG | + | chr5.1:15204184-15204203 | None:intergenic | 30.0% | |
| ATTGCTGGGATAATTACAAT+TGG | + | chr5.1:15203928-15203947 | None:intergenic | 30.0% | |
| CACTTCAAGATATGATATCA+TGG | - | chr5.1:15203437-15203456 | MS.gene86525:CDS | 30.0% | |
| GAGTCTTCAATATAACTCAA+CGG | + | chr5.1:15204435-15204454 | None:intergenic | 30.0% | |
| GATACATTATGTAGGTACAA+TGG | - | chr5.1:15205551-15205570 | MS.gene86525:intron | 30.0% | |
| GTGAAGAGCAAATATTTAAC+AGG | - | chr5.1:15203296-15203315 | MS.gene86525:intron | 30.0% | |
| TAAAGAATACAACCTGCAAA+AGG | + | chr5.1:15203372-15203391 | None:intergenic | 30.0% | |
| TTCAAGGATTTCCTAAAATC+TGG | + | chr5.1:15203178-15203197 | None:intergenic | 30.0% | |
| TTTAATCAACCAGGAAACAT+GGG | - | chr5.1:15203895-15203914 | MS.gene86525:intron | 30.0% | |
| TTTCCTTCAAGATCTTTGTT+TGG | + | chr5.1:15204354-15204373 | None:intergenic | 30.0% | |
| ! | AAAGATGGTTTGTAATCGAT+CGG | + | chr5.1:15205381-15205400 | None:intergenic | 30.0% |
| ! | ATCTTCTTTCACCAGATTTT+AGG | - | chr5.1:15203164-15203183 | MS.gene86525:CDS | 30.0% |
| ! | ATCTTGAAGTGAAACACTTT+TGG | + | chr5.1:15203428-15203447 | None:intergenic | 30.0% |
| ! | TCCTTTGTTTCAGTATACAT+TGG | - | chr5.1:15205262-15205281 | MS.gene86525:intron | 30.0% |
| ! | TCTCAACTATCTTGATTTTC+AGG | - | chr5.1:15204619-15204638 | MS.gene86525:intron | 30.0% |
| ! | TTGTCTGAAATAAAGGTTGA+AGG | + | chr5.1:15204583-15204602 | None:intergenic | 30.0% |
| ! | TTTTACTCATCCAAGAGTTA+TGG | - | chr5.1:15205440-15205459 | MS.gene86525:intron | 30.0% |
| !! | ATCTTTGTTTGGTGTCTTTA+TGG | + | chr5.1:15204343-15204362 | None:intergenic | 30.0% |
| !! | TAATTGGAGGAATTTTAGGA+TGG | - | chr5.1:15203614-15203633 | MS.gene86525:CDS | 30.0% |
| !! | TTTTAGGAAATCCTTGAACA+AGG | - | chr5.1:15203180-15203199 | MS.gene86525:intron | 30.0% |
| !! | TTTTGTACAACTTTTGGAAG+TGG | - | chr5.1:15203069-15203088 | MS.gene86525:CDS | 30.0% |
| AACTTACCAATACTCATTGC+TGG | + | chr5.1:15205308-15205327 | None:intergenic | 35.0% | |
| AAGCAGCTCATTGAGATATA+AGG | - | chr5.1:15204299-15204318 | MS.gene86525:CDS | 35.0% | |
| ACAAGTAGGACTTGAATAAC+TGG | + | chr5.1:15203103-15203122 | None:intergenic | 35.0% | |
| ACACCAAACAAAGATCTTGA+AGG | - | chr5.1:15204348-15204367 | MS.gene86525:CDS | 35.0% | |
| AGGCCTAATTTGAAAGTAGA+AGG | - | chr5.1:15203655-15203674 | MS.gene86525:CDS | 35.0% | |
| AGTGTTCAGTTATTCTGTTG+TGG | - | chr5.1:15205601-15205620 | MS.gene86525:CDS | 35.0% | |
| ATATTTCGATTGTAGCTTGG+TGG | - | chr5.1:15204240-15204259 | MS.gene86525:intron | 35.0% | |
| ATTGTTTATTGTGAAAGCCG+CGG | - | chr5.1:15205214-15205233 | MS.gene86525:intron | 35.0% | |
| CATAGCACTCTTGAATTACT+TGG | - | chr5.1:15204961-15204980 | MS.gene86525:intron | 35.0% | |
| CATGTCTTCTGTAAGAAGTA+TGG | - | chr5.1:15204156-15204175 | MS.gene86525:intron | 35.0% | |
| CTCATATGCATCTTTCTCTA+TGG | - | chr5.1:15204005-15204024 | MS.gene86525:CDS | 35.0% | |
| CTTTAATCAACCAGGAAACA+TGG | - | chr5.1:15203894-15203913 | MS.gene86525:intron | 35.0% | |
| GAAATAAAGGTTGAAGGACT+AGG | + | chr5.1:15204577-15204596 | None:intergenic | 35.0% | |
| GGAAACCGAAAAACTGATTA+TGG | + | chr5.1:15204876-15204895 | None:intergenic | 35.0% | |
| TCAGTCTAACGAATTGATGA+AGG | - | chr5.1:15204655-15204674 | MS.gene86525:intron | 35.0% | |
| TCATCTGCATCATCATAACT+CGG | - | chr5.1:15205168-15205187 | MS.gene86525:intron | 35.0% | |
| TGAATCACATACCTTGTTCA+AGG | + | chr5.1:15203194-15203213 | None:intergenic | 35.0% | |
| TGGTTTATGCCTGTTAATGT+TGG | - | chr5.1:15203580-15203599 | MS.gene86525:CDS | 35.0% | |
| TGTCAAACAACCATAACTCT+TGG | + | chr5.1:15205453-15205472 | None:intergenic | 35.0% | |
| ! | ATTATTGCTGCTTGTTCATC+TGG | - | chr5.1:15203682-15203701 | MS.gene86525:intron | 35.0% |
| ! | ATTGAGATATAAGGCACTTG+AGG | - | chr5.1:15204308-15204327 | MS.gene86525:CDS | 35.0% |
| ! | GTGCTATGGATTACTCTAAA+TGG | + | chr5.1:15204949-15204968 | None:intergenic | 35.0% |
| !! | AGCTTGGTGGTATTTTCATA+TGG | - | chr5.1:15204253-15204272 | MS.gene86525:intron | 35.0% |
| !! | ATCGTCTTTTCCCTTTAGAA+GGG | + | chr5.1:15204388-15204407 | None:intergenic | 35.0% |
| !! | CAAGTAATTCAAGAGTGCTA+TGG | + | chr5.1:15204963-15204982 | None:intergenic | 35.0% |
| AAAGCCAAATCGTAAGACCT+CGG | - | chr5.1:15204457-15204476 | MS.gene86525:CDS | 40.0% | |
| AAGGTGAGTCCAACATTAAC+AGG | + | chr5.1:15203592-15203611 | None:intergenic | 40.0% | |
| ACAGAAGACATGTCTAGTGT+CGG | + | chr5.1:15204148-15204167 | None:intergenic | 40.0% | |
| ACTGAAACAAAGGATCCACT+GGG | + | chr5.1:15205256-15205275 | None:intergenic | 40.0% | |
| ATGATGCAGATGAGTGTCAA+TGG | + | chr5.1:15205161-15205180 | None:intergenic | 40.0% | |
| CATCTTTCTCTATGGCAGTA+AGG | - | chr5.1:15204013-15204032 | MS.gene86525:CDS | 40.0% | |
| CTTTCTCAGCACATATTGCT+GGG | + | chr5.1:15203942-15203961 | None:intergenic | 40.0% | |
| GAACTCACTACAGAAATTGC+TGG | + | chr5.1:15204749-15204768 | None:intergenic | 40.0% | |
| GTAGATACTCCCCTTCTAAA+GGG | - | chr5.1:15204375-15204394 | MS.gene86525:CDS | 40.0% | |
| GTTGGACTCACCTTCTTAAT+TGG | - | chr5.1:15203598-15203617 | MS.gene86525:CDS | 40.0% | |
| TAATTACAGCTTTCTCCCAG+TGG | - | chr5.1:15205238-15205257 | MS.gene86525:intron | 40.0% | |
| TACTGAAACAAAGGATCCAC+TGG | + | chr5.1:15205257-15205276 | None:intergenic | 40.0% | |
| TGAAAACACCGTGATAGAAG+TGG | - | chr5.1:15204407-15204426 | MS.gene86525:CDS | 40.0% | |
| TGTAGATACTCCCCTTCTAA+AGG | - | chr5.1:15204374-15204393 | MS.gene86525:CDS | 40.0% | |
| TTACCAATACTCATTGCTGG+TGG | + | chr5.1:15205305-15205324 | None:intergenic | 40.0% | |
| ! | AGTCCTACTTGTTAGTGCAT+TGG | - | chr5.1:15203111-15203130 | MS.gene86525:CDS | 40.0% |
| ! | CATATGAGAGTGCATTACTG+TGG | + | chr5.1:15203993-15204012 | None:intergenic | 40.0% |
| ! | CATCGTCTTTTCCCTTTAGA+AGG | + | chr5.1:15204389-15204408 | None:intergenic | 40.0% |
| ! | CTTTTCGTACTGCCTGTTAT+TGG | - | chr5.1:15205191-15205210 | MS.gene86525:intron | 40.0% |
| ! | GTCCTACTTGTTAGTGCATT+GGG | - | chr5.1:15203112-15203131 | MS.gene86525:CDS | 40.0% |
| ! | TAGTGCATTGGGAGCTTTTA+TGG | - | chr5.1:15203123-15203142 | MS.gene86525:CDS | 40.0% |
| !! | CAGTTTTTCGGTTTCCTCTT+TGG | - | chr5.1:15204880-15204899 | MS.gene86525:intron | 40.0% |
| !! | TCGTCTTTTCCCTTTAGAAG+GGG | + | chr5.1:15204387-15204406 | None:intergenic | 40.0% |
| AAGCCAAATCGTAAGACCTC+GGG | - | chr5.1:15204458-15204477 | MS.gene86525:CDS | 45.0% | |
| AATCAACCAGGAAACATGGG+AGG | - | chr5.1:15203898-15203917 | MS.gene86525:intron | 45.0% | |
| ATGATTTCAAGCCTGCAGTG+AGG | + | chr5.1:15205127-15205146 | None:intergenic | 45.0% | |
| ATGCCACCAGCAATGAGTAT+TGG | - | chr5.1:15205299-15205318 | MS.gene86525:CDS | 45.0% | |
| CCAGCAATATGTGCTGAGAA+AGG | - | chr5.1:15203940-15203959 | MS.gene86525:intron | 45.0% | |
| CCTTTCTCAGCACATATTGC+TGG | + | chr5.1:15203943-15203962 | None:intergenic | 45.0% | |
| CTCACTACAGAAATTGCTGG+TGG | + | chr5.1:15204746-15204765 | None:intergenic | 45.0% | |
| CTCCCAATGCACTAACAAGT+AGG | + | chr5.1:15203117-15203136 | None:intergenic | 45.0% | |
| CTTGGTCAACATTCCTCTTG+TGG | - | chr5.1:15205655-15205674 | MS.gene86525:CDS | 45.0% | |
| GAGAAAGCTGTAATTAGCCG+CGG | + | chr5.1:15205234-15205253 | None:intergenic | 45.0% | |
| GCAATATGTGCTGAGAAAGG+AGG | - | chr5.1:15203943-15203962 | MS.gene86525:intron | 45.0% | |
| GGACTCACCTTCTTAATTGG+AGG | - | chr5.1:15203601-15203620 | MS.gene86525:CDS | 45.0% | |
| TGACCAAGAAGTGAGAGCTA+TGG | + | chr5.1:15205643-15205662 | None:intergenic | 45.0% | |
| ! | CCAAGCAAAAGTGTGATGCA+AGG | + | chr5.1:15205098-15205117 | None:intergenic | 45.0% |
| ! | CCTTGCATCACACTTTTGCT+TGG | - | chr5.1:15205095-15205114 | MS.gene86525:CDS | 45.0% |
| ! | TGCATCACACTTTTGCTTGG+TGG | - | chr5.1:15205098-15205117 | MS.gene86525:CDS | 45.0% |
| !!! | AACATAATTTTTTTTTTTTT+TGG | - | chr5.1:15203786-15203805 | MS.gene86525:CDS | 5.0% |
| !!! | ATATTTCTAAAATATATTTT+TGG | - | chr5.1:15203716-15203735 | MS.gene86525:intron | 5.0% |
| !!! | TATATACTTTTTTTTTTAAT+TGG | - | chr5.1:15204494-15204513 | MS.gene86525:intron | 5.0% |
| ATGGCTCAGCTGTTTGACGT+AGG | - | chr5.1:15205570-15205589 | MS.gene86525:CDS | 50.0% | |
| CAAACATCGCGTGCACCAAA+TGG | + | chr5.1:15203970-15203989 | None:intergenic | 50.0% | |
| CAGCCATAGCTCTCACTTCT+TGG | - | chr5.1:15205637-15205656 | MS.gene86525:CDS | 50.0% | |
| CGATGTGTCAGTGTCGTGTT+TGG | + | chr5.1:15204063-15204082 | None:intergenic | 50.0% | |
| GCTGAGAAAGGAGGTCCATT+TGG | - | chr5.1:15203952-15203971 | MS.gene86525:intron | 50.0% | |
| TTGGCGCGGTTGAATGGTTA+AGG | - | chr5.1:15204899-15204918 | MS.gene86525:intron | 50.0% | |
| TTTCGGTTTCCTCTTTGGCG+CGG | - | chr5.1:15204885-15204904 | MS.gene86525:intron | 50.0% | |
| ! | ATAGCATAATCTGGCTCCCG+AGG | + | chr5.1:15204477-15204496 | None:intergenic | 50.0% |
| ! | GACATGTCTAGTGTCGGACA+TGG | + | chr5.1:15204142-15204161 | None:intergenic | 50.0% |
| !! | CAACGGTGCCACTTCTATCA+CGG | + | chr5.1:15204418-15204437 | None:intergenic | 50.0% |
| ACCATTCAACCGCGCCAAAG+AGG | + | chr5.1:15204897-15204916 | None:intergenic | 55.0% | |
| GCTCCCGAGGTCTTACGATT+TGG | + | chr5.1:15204464-15204483 | None:intergenic | 55.0% | |
| TCCTCTTTGGCGCGGTTGAA+TGG | - | chr5.1:15204893-15204912 | MS.gene86525:intron | 55.0% | |
| ! | CTTGGTGGTAACCTCACTGC+AGG | - | chr5.1:15205113-15205132 | MS.gene86525:CDS | 55.0% |
| !! | GTGTTTGGTGTCGACGTGTC+AGG | + | chr5.1:15204048-15204067 | None:intergenic | 55.0% |
| GGCAAGCCTCCCATGTTTCC+TGG | + | chr5.1:15203907-15203926 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 15203064 | 15205692 | 15203064 | ID=MS.gene86525 |
| chr5.1 | mRNA | 15203064 | 15205692 | 15203064 | ID=MS.gene86525.t1;Parent=MS.gene86525 |
| chr5.1 | exon | 15205555 | 15205692 | 15205555 | ID=MS.gene86525.t1.exon1;Parent=MS.gene86525.t1 |
| chr5.1 | CDS | 15205555 | 15205692 | 15205555 | ID=cds.MS.gene86525.t1;Parent=MS.gene86525.t1 |
| chr5.1 | exon | 15205298 | 15205377 | 15205298 | ID=MS.gene86525.t1.exon2;Parent=MS.gene86525.t1 |
| chr5.1 | CDS | 15205298 | 15205377 | 15205298 | ID=cds.MS.gene86525.t1;Parent=MS.gene86525.t1 |
| chr5.1 | exon | 15205053 | 15205177 | 15205053 | ID=MS.gene86525.t1.exon3;Parent=MS.gene86525.t1 |
| chr5.1 | CDS | 15205053 | 15205177 | 15205053 | ID=cds.MS.gene86525.t1;Parent=MS.gene86525.t1 |
| chr5.1 | exon | 15204727 | 15204848 | 15204727 | ID=MS.gene86525.t1.exon4;Parent=MS.gene86525.t1 |
| chr5.1 | CDS | 15204727 | 15204848 | 15204727 | ID=cds.MS.gene86525.t1;Parent=MS.gene86525.t1 |
| chr5.1 | exon | 15204289 | 15204501 | 15204289 | ID=MS.gene86525.t1.exon5;Parent=MS.gene86525.t1 |
| chr5.1 | CDS | 15204289 | 15204501 | 15204289 | ID=cds.MS.gene86525.t1;Parent=MS.gene86525.t1 |
| chr5.1 | exon | 15203996 | 15204115 | 15203996 | ID=MS.gene86525.t1.exon6;Parent=MS.gene86525.t1 |
| chr5.1 | CDS | 15203996 | 15204115 | 15203996 | ID=cds.MS.gene86525.t1;Parent=MS.gene86525.t1 |
| chr5.1 | exon | 15203773 | 15203873 | 15203773 | ID=MS.gene86525.t1.exon7;Parent=MS.gene86525.t1 |
| chr5.1 | CDS | 15203773 | 15203873 | 15203773 | ID=cds.MS.gene86525.t1;Parent=MS.gene86525.t1 |
| chr5.1 | exon | 15203436 | 15203674 | 15203436 | ID=MS.gene86525.t1.exon8;Parent=MS.gene86525.t1 |
| chr5.1 | CDS | 15203436 | 15203674 | 15203436 | ID=cds.MS.gene86525.t1;Parent=MS.gene86525.t1 |
| chr5.1 | exon | 15203064 | 15203191 | 15203064 | ID=MS.gene86525.t1.exon9;Parent=MS.gene86525.t1 |
| chr5.1 | CDS | 15203064 | 15203191 | 15203064 | ID=cds.MS.gene86525.t1;Parent=MS.gene86525.t1 |
| Gene Sequence |
| Protein sequence |
