Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72673.t1 | KEH27633.1 | 95.5 | 381 | 17 | 0 | 1 | 381 | 1 | 381 | 1.90E-197 | 698.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72673.t1 | Q9FKY4 | 54.7 | 380 | 147 | 2 | 1 | 380 | 1 | 355 | 4.2e-113 | 409.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72673.t1 | A0A072UEV2 | 95.5 | 381 | 17 | 0 | 1 | 381 | 1 | 381 | 1.4e-197 | 698.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene72673 | MS.gene066493 | PPI |
| MS.gene69976 | MS.gene72673 | PPI |
| MS.gene72673 | MS.gene86524 | PPI |
| MS.gene82524 | MS.gene72673 | PPI |
| MS.gene65344 | MS.gene72673 | PPI |
| MS.gene64906 | MS.gene72673 | PPI |
| MS.gene86523 | MS.gene72673 | PPI |
| MS.gene72674 | MS.gene72673 | PPI |
| MS.gene72673 | MS.gene23822 | PPI |
| MS.gene99561 | MS.gene72673 | PPI |
| MS.gene64907 | MS.gene72673 | PPI |
| MS.gene72673 | MS.gene86525 | PPI |
| MS.gene72673 | MS.gene64908 | PPI |
| MS.gene72672 | MS.gene72673 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72673.t1 | MTR_5g024640 | 95.538 | 381 | 17 | 0 | 1 | 381 | 1 | 381 | 0.0 | 736 |
| MS.gene72673.t1 | MTR_5g024640 | 95.526 | 380 | 17 | 0 | 1 | 380 | 1 | 380 | 0.0 | 735 |
| MS.gene72673.t1 | MTR_5g024660 | 88.421 | 380 | 44 | 0 | 1 | 380 | 1 | 380 | 0.0 | 685 |
| MS.gene72673.t1 | MTR_5g024640 | 94.667 | 300 | 16 | 0 | 1 | 300 | 1 | 300 | 0.0 | 577 |
| MS.gene72673.t1 | MTR_5g024520 | 73.947 | 380 | 33 | 2 | 1 | 380 | 1 | 314 | 0.0 | 531 |
| MS.gene72673.t1 | MTR_8g073160 | 58.158 | 380 | 118 | 5 | 1 | 380 | 1 | 339 | 3.67e-153 | 437 |
| MS.gene72673.t1 | MTR_5g024560 | 92.889 | 225 | 16 | 0 | 156 | 380 | 35 | 259 | 6.64e-151 | 428 |
| MS.gene72673.t1 | MTR_5g024580 | 94.872 | 156 | 8 | 0 | 1 | 156 | 1 | 156 | 9.82e-104 | 303 |
| MS.gene72673.t1 | MTR_5g024970 | 39.898 | 391 | 212 | 5 | 1 | 381 | 1 | 378 | 1.26e-101 | 306 |
| MS.gene72673.t1 | MTR_5g024970 | 40.103 | 389 | 210 | 5 | 1 | 379 | 1 | 376 | 5.34e-101 | 305 |
| MS.gene72673.t1 | MTR_5g024970 | 37.740 | 416 | 209 | 6 | 1 | 379 | 1 | 403 | 1.54e-95 | 292 |
| MS.gene72673.t1 | MTR_8g072560 | 39.221 | 385 | 205 | 5 | 1 | 379 | 1 | 362 | 4.21e-95 | 290 |
| MS.gene72673.t1 | MTR_8g006780 | 38.187 | 364 | 209 | 4 | 1 | 361 | 1 | 351 | 1.66e-80 | 253 |
| MS.gene72673.t1 | MTR_5g024970 | 40.190 | 316 | 167 | 4 | 74 | 379 | 9 | 312 | 3.22e-80 | 250 |
| MS.gene72673.t1 | MTR_5g024970 | 38.720 | 328 | 178 | 5 | 1 | 318 | 1 | 315 | 2.54e-78 | 244 |
| MS.gene72673.t1 | MTR_8g006775 | 34.121 | 381 | 245 | 3 | 1 | 380 | 1 | 376 | 7.99e-75 | 238 |
| MS.gene72673.t1 | MTR_5g024970 | 38.065 | 310 | 169 | 5 | 1 | 300 | 1 | 297 | 4.25e-71 | 226 |
| MS.gene72673.t1 | MTR_5g024970 | 50.289 | 173 | 85 | 1 | 1 | 173 | 1 | 172 | 1.19e-59 | 194 |
| MS.gene72673.t1 | MTR_5g024970 | 50.289 | 173 | 85 | 1 | 1 | 173 | 1 | 172 | 3.42e-59 | 193 |
| MS.gene72673.t1 | MTR_7g074190 | 32.258 | 372 | 228 | 5 | 7 | 374 | 26 | 377 | 1.62e-53 | 183 |
| MS.gene72673.t1 | MTR_8g006780 | 44.385 | 187 | 103 | 1 | 1 | 187 | 1 | 186 | 1.80e-50 | 172 |
| MS.gene72673.t1 | MTR_8g006780 | 39.062 | 128 | 73 | 2 | 236 | 361 | 157 | 281 | 1.52e-13 | 71.6 |
| MS.gene72673.t1 | MTR_5g054950 | 29.648 | 398 | 247 | 10 | 7 | 377 | 17 | 408 | 3.08e-50 | 175 |
| MS.gene72673.t1 | MTR_1g108390 | 27.612 | 402 | 255 | 9 | 7 | 377 | 19 | 415 | 2.18e-45 | 162 |
| MS.gene72673.t1 | MTR_5g024530 | 91.667 | 72 | 6 | 0 | 1 | 72 | 1 | 72 | 4.38e-38 | 134 |
| MS.gene72673.t1 | MTR_5g020660 | 76.744 | 43 | 10 | 0 | 3 | 45 | 100 | 142 | 4.91e-14 | 69.3 |
| MS.gene72673.t1 | MTR_5g024960 | 50.794 | 63 | 31 | 0 | 317 | 379 | 51 | 113 | 1.12e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72673.t1 | AT5G65980 | 55.118 | 381 | 146 | 3 | 1 | 381 | 1 | 356 | 3.54e-148 | 424 |
| MS.gene72673.t1 | AT5G65980 | 55.263 | 380 | 145 | 3 | 1 | 380 | 1 | 355 | 8.27e-148 | 424 |
| MS.gene72673.t1 | AT2G17500 | 53.141 | 382 | 151 | 4 | 1 | 380 | 1 | 356 | 3.42e-145 | 417 |
| MS.gene72673.t1 | AT2G17500 | 53.141 | 382 | 151 | 4 | 1 | 380 | 1 | 356 | 3.42e-145 | 417 |
| MS.gene72673.t1 | AT2G17500 | 53.141 | 382 | 151 | 4 | 1 | 380 | 1 | 356 | 3.42e-145 | 417 |
| MS.gene72673.t1 | AT2G17500 | 53.141 | 382 | 151 | 4 | 1 | 380 | 1 | 356 | 3.42e-145 | 417 |
| MS.gene72673.t1 | AT1G76520 | 37.760 | 384 | 197 | 8 | 3 | 379 | 1 | 349 | 2.96e-90 | 277 |
| MS.gene72673.t1 | AT1G76520 | 37.760 | 384 | 197 | 8 | 3 | 379 | 1 | 349 | 2.96e-90 | 277 |
| MS.gene72673.t1 | AT1G20925 | 36.412 | 379 | 205 | 6 | 1 | 379 | 89 | 431 | 1.85e-84 | 265 |
| MS.gene72673.t1 | AT1G76530 | 37.056 | 394 | 213 | 7 | 1 | 379 | 1 | 374 | 5.72e-77 | 244 |
| MS.gene72673.t1 | AT1G76530 | 37.056 | 394 | 213 | 7 | 1 | 379 | 1 | 374 | 5.72e-77 | 244 |
| MS.gene72673.t1 | AT5G01990 | 33.423 | 371 | 232 | 6 | 7 | 374 | 28 | 386 | 2.98e-58 | 196 |
| MS.gene72673.t1 | AT1G76530 | 45.238 | 168 | 89 | 2 | 1 | 168 | 1 | 165 | 6.82e-46 | 160 |
| MS.gene72673.t1 | AT1G71090 | 27.763 | 389 | 255 | 6 | 12 | 377 | 21 | 406 | 8.95e-46 | 163 |
Find 70 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTTGTTTGGTGCCTTTA+TGG | 0.142088 | 5.4:+15821934 | None:intergenic |
| GTTGGACTCACCTTCTTAAT+TGG | 0.176033 | 5.4:-15822584 | MS.gene72673:CDS |
| AAGCAGCTCATTGAGATTTA+AGG | 0.177124 | 5.4:-15821975 | MS.gene72673:CDS |
| GTGCTTTGGATTACTCTAAA+TGG | 0.279594 | 5.4:+15821365 | None:intergenic |
| TTCAAGGATTTCCTAAAATC+TGG | 0.305654 | 5.4:+15822982 | None:intergenic |
| TAGTGCATTGGGAGCTTTCA+TGG | 0.323305 | 5.4:-15823034 | MS.gene72673:CDS |
| ATCTTGAAGTGAAACACTTT+TGG | 0.323759 | 5.4:+15822727 | None:intergenic |
| CAAAGCACTCTTGAATTACT+TGG | 0.330746 | 5.4:-15821350 | MS.gene72673:CDS |
| AGACCCTCCACTTTCAAATT+AGG | 0.340376 | 5.4:+15822524 | None:intergenic |
| GTCTTACTTATTAGTGCATT+GGG | 0.344632 | 5.4:-15823045 | MS.gene72673:CDS |
| TGGTTAAGGAACTTAATAAT+TGG | 0.345062 | 5.4:-15821398 | MS.gene72673:CDS |
| CCTTTCTCATCACATATTGC+TGG | 0.361228 | 5.4:+15822359 | None:intergenic |
| TTTCCTTCAAGATCTTTGTT+TGG | 0.369482 | 5.4:+15821923 | None:intergenic |
| CAAGTAATTCAAGAGTGCTT+TGG | 0.369622 | 5.4:+15821351 | None:intergenic |
| TTGGCGCGGTTGCATGGTTA+AGG | 0.374002 | 5.4:-15821412 | MS.gene72673:CDS |
| AAGGTGAGTCCAACATTAAC+AGG | 0.375380 | 5.4:+15822593 | None:intergenic |
| CACTTACTAATATTCATTGC+TGG | 0.382132 | 5.4:+15821008 | None:intergenic |
| ATTATTGCTGCATGTTCATC+AGG | 0.383193 | 5.4:-15822500 | MS.gene72673:intron |
| ATAAGTAAGACTTGAATAAC+TGG | 0.384032 | 5.4:+15823057 | None:intergenic |
| ACAATAAACAATCCAATAAC+AGG | 0.393798 | 5.4:+15821110 | None:intergenic |
| TCCTCTTTGGCGCGGTTGCA+TGG | 0.411798 | 5.4:-15821418 | MS.gene72673:CDS |
| TGAATCACATACCTTGTTCA+AGG | 0.415570 | 5.4:+15822966 | None:intergenic |
| AGTCTTACTTATTAGTGCAT+TGG | 0.424802 | 5.4:-15823046 | MS.gene72673:CDS |
| TCTTATAGTTTGAAAAGTAT+AGG | 0.432637 | 5.4:+15821997 | None:intergenic |
| GAACTCACTATAGAAATTGC+TGG | 0.437401 | 5.4:+15821537 | None:intergenic |
| CTTGGTGGTAACCTCACTGC+TGG | 0.446908 | 5.4:-15821200 | MS.gene72673:CDS |
| CAAACATCACGTGCACCAAA+TGG | 0.448319 | 5.4:+15822332 | None:intergenic |
| CTTTAATTAACCAGGAAACA+TGG | 0.454338 | 5.4:-15822405 | MS.gene72673:intron |
| ACCAATGTATACTGAAACAA+AGG | 0.455002 | 5.4:+15821050 | None:intergenic |
| GTGAAAGCCGCTGCTAGTTA+CGG | 0.455271 | 5.4:-15821089 | MS.gene72673:CDS |
| TGCTGGTGGTGATATTAGTT+CGG | 0.459978 | 5.4:+15821554 | None:intergenic |
| ATTGCTGGGATAATTACAAT+TGG | 0.474607 | 5.4:+15822374 | None:intergenic |
| TGCTAGTTACGGCTTTCTCC+CGG | 0.474979 | 5.4:-15821078 | MS.gene72673:CDS |
| CACTTCAAGATATGATATCA+TGG | 0.475301 | 5.4:-15822715 | MS.gene72673:intron |
| GGACTCACCTTCTTAATTGG+AGG | 0.486449 | 5.4:-15822581 | MS.gene72673:CDS |
| TGAGGCTGCTGAGACCATAA+AGG | 0.496562 | 5.4:-15821948 | MS.gene72673:CDS |
| GATGAGAAAGGAGGTCCATT+TGG | 0.502562 | 5.4:-15822347 | MS.gene72673:CDS |
| CTCATATGCATCTTTCTCAA+TGG | 0.504086 | 5.4:-15822294 | MS.gene72673:CDS |
| ATTATTCGATTGTAGCTTGG+TGG | 0.506240 | 5.4:-15822034 | MS.gene72673:intron |
| CTTTCTCATCACATATTGCT+GGG | 0.510924 | 5.4:+15822360 | None:intergenic |
| GACTCACCTTCTTAATTGGA+GGG | 0.517607 | 5.4:-15822580 | MS.gene72673:CDS |
| TAAAATCCCTCCAATTAAGA+AGG | 0.522026 | 5.4:+15822574 | None:intergenic |
| TCCTTTGTTTCAGTATACAT+TGG | 0.525819 | 5.4:-15821051 | MS.gene72673:CDS |
| TGGTTTATGCCTGTTAATGT+TGG | 0.526823 | 5.4:-15822602 | MS.gene72673:CDS |
| GCACCAAACAAAGATCTTGA+AGG | 0.527698 | 5.4:-15821926 | MS.gene72673:CDS |
| TACTGAAACAAAGGATCCAC+CGG | 0.528425 | 5.4:+15821059 | None:intergenic |
| ATTGAGATTTAAGGCACTTG+AGG | 0.546011 | 5.4:-15821966 | MS.gene72673:CDS |
| TTTAATTAACCAGGAAACAT+GGG | 0.548770 | 5.4:-15822404 | MS.gene72673:intron |
| ACCATGCAACCGCGCCAAAG+AGG | 0.556288 | 5.4:+15821417 | None:intergenic |
| TCAGTCTCATGAATCGAAGA+AGG | 0.559071 | 5.4:-15821628 | MS.gene72673:CDS |
| ACTGAGGCCTAATTTGAAAG+TGG | 0.562948 | 5.4:-15822531 | MS.gene72673:CDS |
| AAAGCACTCTTGAATTACTT+GGG | 0.574422 | 5.4:-15821349 | MS.gene72673:intron |
| CCAGCAATATGTGATGAGAA+AGG | 0.578816 | 5.4:-15822359 | MS.gene72673:CDS |
| AAACTTGAAAATATAAGTGA+AGG | 0.585111 | 5.4:+15822752 | None:intergenic |
| AGGCCTAATTTGAAAGTGGA+GGG | 0.605976 | 5.4:-15822527 | MS.gene72673:CDS |
| TTACTAATATTCATTGCTGG+TGG | 0.608709 | 5.4:+15821011 | None:intergenic |
| CAACGGTAACACTTCTATCA+CGG | 0.611802 | 5.4:+15821859 | None:intergenic |
| ATGATGCAGATGAGTGTCAA+TGG | 0.615768 | 5.4:+15821155 | None:intergenic |
| GAGGCCTAATTTGAAAGTGG+AGG | 0.631288 | 5.4:-15822528 | MS.gene72673:CDS |
| TCATCTGCATCATCATAACT+CGG | 0.636536 | 5.4:-15821145 | MS.gene72673:CDS |
| CCAAGCAAAAGTGTGATGCA+AGG | 0.640175 | 5.4:+15821218 | None:intergenic |
| TAGTTACGGCTTTCTCCCGG+TGG | 0.641389 | 5.4:-15821075 | MS.gene72673:CDS |
| GAGAAAGCCGTAACTAGCAG+CGG | 0.645019 | 5.4:+15821082 | None:intergenic |
| AAGTCTTCAGTATAACTCAA+CGG | 0.651953 | 5.4:+15821842 | None:intergenic |
| TTTCGGTTTCCTCTTTGGCG+CGG | 0.666266 | 5.4:-15821426 | MS.gene72673:CDS |
| CTCACTATAGAAATTGCTGG+TGG | 0.689744 | 5.4:+15821540 | None:intergenic |
| GGATATTAGTAAAATTACTG+AGG | 0.706826 | 5.4:-15822547 | MS.gene72673:CDS |
| GCAATATGTGATGAGAAAGG+AGG | 0.713358 | 5.4:-15822356 | MS.gene72673:CDS |
| ACTGAAACAAAGGATCCACC+GGG | 0.716942 | 5.4:+15821060 | None:intergenic |
| ATGATTTCAAGCCAGCAGTG+AGG | 0.732037 | 5.4:+15821189 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATATTTTCAAATTATTAT+TGG | + | chr5.4:15821919-15821938 | None:intergenic | 10.0% |
| !!! | GTTACTTTTTTTTTTTGAAT+TGG | + | chr5.4:15821212-15821231 | None:intergenic | 15.0% |
| !! | AAACTTGAAAATATAAGTGA+AGG | + | chr5.4:15821351-15821370 | None:intergenic | 20.0% |
| !! | AAGAAAGAAGATAAAGAAAA+GGG | + | chr5.4:15822588-15822607 | None:intergenic | 20.0% |
| !! | AGTTTAAACAAATAATTGTG+TGG | + | chr5.4:15822836-15822855 | None:intergenic | 20.0% |
| !! | CAAAGTATAAAAATGTGAAT+AGG | + | chr5.4:15821846-15821865 | None:intergenic | 20.0% |
| !!! | CTATTCACATTTTTATACTT+TGG | - | chr5.4:15821844-15821863 | MS.gene72673:CDS | 20.0% |
| !!! | TCTTATAGTTTGAAAAGTAT+AGG | + | chr5.4:15822106-15822125 | None:intergenic | 20.0% |
| !!! | TGAAATACTGTTTTGTTTTT+CGG | - | chr5.4:15821288-15821307 | MS.gene72673:intron | 20.0% |
| !!! | TGGTTTTTATGAAGAAATTA+AGG | + | chr5.4:15822783-15822802 | None:intergenic | 20.0% |
| !!! | TGTTTATTACTGATTAATAC+AGG | - | chr5.4:15821475-15821494 | MS.gene72673:intron | 20.0% |
| ! | ACAATAAACAATCCAATAAC+AGG | + | chr5.4:15822993-15823012 | None:intergenic | 25.0% |
| ! | ATAAGTAAGACTTGAATAAC+TGG | + | chr5.4:15821046-15821065 | None:intergenic | 25.0% |
| ! | ATAATTATTCGATTGTAGCT+TGG | - | chr5.4:15822063-15822082 | MS.gene72673:intron | 25.0% |
| ! | CAAGAAAGAAGATAAAGAAA+AGG | + | chr5.4:15822589-15822608 | None:intergenic | 25.0% |
| ! | GAATTATGCTTTAATTAACC+AGG | - | chr5.4:15821687-15821706 | MS.gene72673:intron | 25.0% |
| ! | GGATATTAGTAAAATTACTG+AGG | - | chr5.4:15821553-15821572 | MS.gene72673:CDS | 25.0% |
| ! | TGGTTAAGGAACTTAATAAT+TGG | - | chr5.4:15822702-15822721 | MS.gene72673:intron | 25.0% |
| ! | TTTAATTAACCAGGAAACAT+GGG | - | chr5.4:15821696-15821715 | MS.gene72673:intron | 25.0% |
| !! | TTATTACTGATTAATACAGG+TGG | - | chr5.4:15821478-15821497 | MS.gene72673:intron | 25.0% |
| !! | TTATTCCATGATCAGTTTTT+CGG | - | chr5.4:15822657-15822676 | MS.gene72673:intron | 25.0% |
| AACTTGATTCTTTGCAGAAA+TGG | - | chr5.4:15822852-15822871 | MS.gene72673:intron | 30.0% | |
| AAGTCTTCAGTATAACTCAA+CGG | + | chr5.4:15822261-15822280 | None:intergenic | 30.0% | |
| ACCAATGTATACTGAAACAA+AGG | + | chr5.4:15823053-15823072 | None:intergenic | 30.0% | |
| AGTCTTACTTATTAGTGCAT+TGG | - | chr5.4:15821054-15821073 | MS.gene72673:CDS | 30.0% | |
| ATTGCTGGGATAATTACAAT+TGG | + | chr5.4:15821729-15821748 | None:intergenic | 30.0% | |
| CACTTACTAATATTCATTGC+TGG | + | chr5.4:15823095-15823114 | None:intergenic | 30.0% | |
| CACTTCAAGATATGATATCA+TGG | - | chr5.4:15821385-15821404 | MS.gene72673:CDS | 30.0% | |
| CTTTAATTAACCAGGAAACA+TGG | - | chr5.4:15821695-15821714 | MS.gene72673:intron | 30.0% | |
| GTCTTACTTATTAGTGCATT+GGG | - | chr5.4:15821055-15821074 | MS.gene72673:CDS | 30.0% | |
| GTGAAGAGCAAATATTTAAC+AGG | - | chr5.4:15821260-15821279 | MS.gene72673:intron | 30.0% | |
| TAAAATCCCTCCAATTAAGA+AGG | + | chr5.4:15821529-15821548 | None:intergenic | 30.0% | |
| TAGAAAAGAAGTAGAGACTA+AGG | + | chr5.4:15822812-15822831 | None:intergenic | 30.0% | |
| TTACTAATATTCATTGCTGG+TGG | + | chr5.4:15823092-15823111 | None:intergenic | 30.0% | |
| TTCAAGGATTTCCTAAAATC+TGG | + | chr5.4:15821121-15821140 | None:intergenic | 30.0% | |
| TTTCCTTCAAGATCTTTGTT+TGG | + | chr5.4:15822180-15822199 | None:intergenic | 30.0% | |
| ! | AAAGCACTCTTGAATTACTT+GGG | - | chr5.4:15822751-15822770 | MS.gene72673:CDS | 30.0% |
| ! | ATAGCATAATTTAGTTCCCA+AGG | + | chr5.4:15822303-15822322 | None:intergenic | 30.0% |
| ! | ATCTTCTTTCACCAGATTTT+AGG | - | chr5.4:15821107-15821126 | MS.gene72673:CDS | 30.0% |
| ! | ATCTTGAAGTGAAACACTTT+TGG | + | chr5.4:15821376-15821395 | None:intergenic | 30.0% |
| ! | TCCTTTGTTTCAGTATACAT+TGG | - | chr5.4:15823049-15823068 | MS.gene72673:CDS | 30.0% |
| ! | TTCTTAATTGGAGGGATTTT+AGG | - | chr5.4:15821528-15821547 | MS.gene72673:intron | 30.0% |
| !! | TAACTCTGATTTTGCTATCA+CGG | - | chr5.4:15821443-15821462 | MS.gene72673:intron | 30.0% |
| !! | TTTTAGGAAATCCTTGAACA+AGG | - | chr5.4:15821123-15821142 | MS.gene72673:CDS | 30.0% |
| !! | TTTTGTACAACTTTTGGAAG+TGG | - | chr5.4:15821012-15821031 | MS.gene72673:CDS | 30.0% |
| AAAGCCAAATTGTAAGACCT+TGG | - | chr5.4:15822283-15822302 | MS.gene72673:intron | 35.0% | |
| AAGCAGCTCATTGAGATTTA+AGG | - | chr5.4:15822125-15822144 | MS.gene72673:intron | 35.0% | |
| AAGCCAAATTGTAAGACCTT+GGG | - | chr5.4:15822284-15822303 | MS.gene72673:intron | 35.0% | |
| AGTAGAGACTAAGGACTATT+TGG | + | chr5.4:15822803-15822822 | None:intergenic | 35.0% | |
| AGTGTCTTCTATCAGAAGTA+TGG | - | chr5.4:15821985-15822004 | MS.gene72673:CDS | 35.0% | |
| ATTATTCGATTGTAGCTTGG+TGG | - | chr5.4:15822066-15822085 | MS.gene72673:intron | 35.0% | |
| ATTATTGCTGCATGTTCATC+AGG | - | chr5.4:15821600-15821619 | MS.gene72673:CDS | 35.0% | |
| CCTGAAAATCAAGATAGTTG+AGG | + | chr5.4:15822439-15822458 | None:intergenic | 35.0% | |
| CTCATATGCATCTTTCTCAA+TGG | - | chr5.4:15821806-15821825 | MS.gene72673:intron | 35.0% | |
| CTTTCTCATCACATATTGCT+GGG | + | chr5.4:15821743-15821762 | None:intergenic | 35.0% | |
| GAACTCACTATAGAAATTGC+TGG | + | chr5.4:15822566-15822585 | None:intergenic | 35.0% | |
| TCATCTGCATCATCATAACT+CGG | - | chr5.4:15822955-15822974 | MS.gene72673:intron | 35.0% | |
| TGAATCACATACCTTGTTCA+AGG | + | chr5.4:15821137-15821156 | None:intergenic | 35.0% | |
| TGGTTTATGCCTGTTAATGT+TGG | - | chr5.4:15821498-15821517 | MS.gene72673:intron | 35.0% | |
| TGTAACATAGCAGAGAAGAA+AGG | + | chr5.4:15822615-15822634 | None:intergenic | 35.0% | |
| ! | ATTGAGATTTAAGGCACTTG+AGG | - | chr5.4:15822134-15822153 | MS.gene72673:intron | 35.0% |
| ! | CAAAGCACTCTTGAATTACT+TGG | - | chr5.4:15822750-15822769 | MS.gene72673:CDS | 35.0% |
| ! | CCTCAACTATCTTGATTTTC+AGG | - | chr5.4:15822436-15822455 | MS.gene72673:intron | 35.0% |
| ! | GTGCTTTGGATTACTCTAAA+TGG | + | chr5.4:15822738-15822757 | None:intergenic | 35.0% |
| ! | TCCTTAACTCTTGTTTCAGA+CGG | - | chr5.4:15822397-15822416 | MS.gene72673:intron | 35.0% |
| !! | ATCGACTTTTCCCTTTAGAA+GGG | + | chr5.4:15822214-15822233 | None:intergenic | 35.0% |
| !! | ATCTTTGTTTGGTGCCTTTA+TGG | + | chr5.4:15822169-15822188 | None:intergenic | 35.0% |
| !! | CAAGTAATTCAAGAGTGCTT+TGG | + | chr5.4:15822752-15822771 | None:intergenic | 35.0% |
| !! | TAATTGGAGGGATTTTAGGA+TGG | - | chr5.4:15821532-15821551 | MS.gene72673:intron | 35.0% |
| AAGAATACGACCTGCAAAAC+AGG | + | chr5.4:15821318-15821337 | None:intergenic | 40.0% | |
| AAGGTGAGTCCAACATTAAC+AGG | + | chr5.4:15821510-15821529 | None:intergenic | 40.0% | |
| ACTGAGGCCTAATTTGAAAG+TGG | - | chr5.4:15821569-15821588 | MS.gene72673:CDS | 40.0% | |
| AGACCCTCCACTTTCAAATT+AGG | + | chr5.4:15821579-15821598 | None:intergenic | 40.0% | |
| AGGCCTAATTTGAAAGTGGA+GGG | - | chr5.4:15821573-15821592 | MS.gene72673:CDS | 40.0% | |
| ATGATGCAGATGAGTGTCAA+TGG | + | chr5.4:15822948-15822967 | None:intergenic | 40.0% | |
| CAACGGTAACACTTCTATCA+CGG | + | chr5.4:15822244-15822263 | None:intergenic | 40.0% | |
| CCAGCAATATGTGATGAGAA+AGG | - | chr5.4:15821741-15821760 | MS.gene72673:intron | 40.0% | |
| CCTTTCTCATCACATATTGC+TGG | + | chr5.4:15821744-15821763 | None:intergenic | 40.0% | |
| CTCACTATAGAAATTGCTGG+TGG | + | chr5.4:15822563-15822582 | None:intergenic | 40.0% | |
| GACTCACCTTCTTAATTGGA+GGG | - | chr5.4:15821520-15821539 | MS.gene72673:intron | 40.0% | |
| GCAATATGTGATGAGAAAGG+AGG | - | chr5.4:15821744-15821763 | MS.gene72673:intron | 40.0% | |
| GCACCAAACAAAGATCTTGA+AGG | - | chr5.4:15822174-15822193 | MS.gene72673:intron | 40.0% | |
| GGAAACCGAAAAACTGATCA+TGG | + | chr5.4:15822665-15822684 | None:intergenic | 40.0% | |
| GTTCCCAAGGTCTTACAATT+TGG | + | chr5.4:15822290-15822309 | None:intergenic | 40.0% | |
| GTTGGACTCACCTTCTTAAT+TGG | - | chr5.4:15821516-15821535 | MS.gene72673:intron | 40.0% | |
| TACTGAAACAAAGGATCCAC+CGG | + | chr5.4:15823044-15823063 | None:intergenic | 40.0% | |
| TCAGTCTCATGAATCGAAGA+AGG | - | chr5.4:15822472-15822491 | MS.gene72673:intron | 40.0% | |
| TGAATCACTGATACAGACAC+CGG | - | chr5.4:15821871-15821890 | MS.gene72673:CDS | 40.0% | |
| ! | ACCGTCTGAAACAAGAGTTA+AGG | + | chr5.4:15822401-15822420 | None:intergenic | 40.0% |
| ! | CTTTTCGTACTGCCTGTTAT+TGG | - | chr5.4:15822978-15822997 | MS.gene72673:CDS | 40.0% |
| ! | TGCTGGTGGTGATATTAGTT+CGG | + | chr5.4:15822549-15822568 | None:intergenic | 40.0% |
| ! | TTTCGGTTTACCTGTTTTGC+AGG | - | chr5.4:15821305-15821324 | MS.gene72673:intron | 40.0% |
| !! | AGCTTGGTGGTATTTTCGTA+TGG | - | chr5.4:15822079-15822098 | MS.gene72673:intron | 40.0% |
| !! | CAGTTTTTCGGTTTCCTCTT+TGG | - | chr5.4:15822669-15822688 | MS.gene72673:intron | 40.0% |
| !! | TCGACTTTTCCCTTTAGAAG+GGG | + | chr5.4:15822213-15822232 | None:intergenic | 40.0% |
| !!! | CATCGACTTTTCCCTTTAGA+AGG | + | chr5.4:15822215-15822234 | None:intergenic | 40.0% |
| ACTGAAACAAAGGATCCACC+GGG | + | chr5.4:15823043-15823062 | None:intergenic | 45.0% | |
| ATGATTTCAAGCCAGCAGTG+AGG | + | chr5.4:15822914-15822933 | None:intergenic | 45.0% | |
| CAAACATCACGTGCACCAAA+TGG | + | chr5.4:15821771-15821790 | None:intergenic | 45.0% | |
| GAGGCCTAATTTGAAAGTGG+AGG | - | chr5.4:15821572-15821591 | MS.gene72673:CDS | 45.0% | |
| GATGAGAAAGGAGGTCCATT+TGG | - | chr5.4:15821753-15821772 | MS.gene72673:intron | 45.0% | |
| GGACTCACCTTCTTAATTGG+AGG | - | chr5.4:15821519-15821538 | MS.gene72673:intron | 45.0% | |
| GTAGATACCCCCCTTCTAAA+GGG | - | chr5.4:15822201-15822220 | MS.gene72673:intron | 45.0% | |
| TAGTGCATTGGGAGCTTTCA+TGG | - | chr5.4:15821066-15821085 | MS.gene72673:CDS | 45.0% | |
| TGTAGATACCCCCCTTCTAA+AGG | - | chr5.4:15822200-15822219 | MS.gene72673:intron | 45.0% | |
| ! | CCAAGCAAAAGTGTGATGCA+AGG | + | chr5.4:15822885-15822904 | None:intergenic | 45.0% |
| ! | CCTTGCATCACACTTTTGCT+TGG | - | chr5.4:15822882-15822901 | MS.gene72673:intron | 45.0% |
| ! | TGCATCACACTTTTGCTTGG+TGG | - | chr5.4:15822885-15822904 | MS.gene72673:intron | 45.0% |
| !! | CGACTTTTCCCTTTAGAAGG+GGG | + | chr5.4:15822212-15822231 | None:intergenic | 45.0% |
| !! | GACTTTTCCCTTTAGAAGGG+GGG | + | chr5.4:15822211-15822230 | None:intergenic | 45.0% |
| ACTGATACAGACACCGGACA+CGG | - | chr5.4:15821877-15821896 | MS.gene72673:CDS | 50.0% | |
| CGTCTGTGTCAATGCCATGT+CGG | - | chr5.4:15821954-15821973 | MS.gene72673:CDS | 50.0% | |
| GACACTTCTAGTGTCCGACA+TGG | + | chr5.4:15821971-15821990 | None:intergenic | 50.0% | |
| GAGAAAGCCGTAACTAGCAG+CGG | + | chr5.4:15823021-15823040 | None:intergenic | 50.0% | |
| GGCAAGTTTCCCATGTTTCC+TGG | + | chr5.4:15821708-15821727 | None:intergenic | 50.0% | |
| GTGAAAGCCGCTGCTAGTTA+CGG | - | chr5.4:15823011-15823030 | MS.gene72673:CDS | 50.0% | |
| TGAGGCTGCTGAGACCATAA+AGG | - | chr5.4:15822152-15822171 | MS.gene72673:intron | 50.0% | |
| TGCTAGTTACGGCTTTCTCC+CGG | - | chr5.4:15823022-15823041 | MS.gene72673:CDS | 50.0% | |
| TTTCGGTTTCCTCTTTGGCG+CGG | - | chr5.4:15822674-15822693 | MS.gene72673:intron | 50.0% | |
| TAGTTACGGCTTTCTCCCGG+TGG | - | chr5.4:15823025-15823044 | MS.gene72673:CDS | 55.0% | |
| TTGGCGCGGTTGCATGGTTA+AGG | - | chr5.4:15822688-15822707 | MS.gene72673:intron | 55.0% | |
| ! | CTTGGTGGTAACCTCACTGC+TGG | - | chr5.4:15822900-15822919 | MS.gene72673:intron | 55.0% |
| ACCATGCAACCGCGCCAAAG+AGG | + | chr5.4:15822686-15822705 | None:intergenic | 60.0% | |
| TCCTCTTTGGCGCGGTTGCA+TGG | - | chr5.4:15822682-15822701 | MS.gene72673:intron | 60.0% | |
| ! | CGATGTGTGAGTGCCGTGTC+CGG | + | chr5.4:15821893-15821912 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 15821007 | 15823115 | 15821007 | ID=MS.gene72673 |
| chr5.4 | mRNA | 15821007 | 15823115 | 15821007 | ID=MS.gene72673.t1;Parent=MS.gene72673 |
| chr5.4 | exon | 15822978 | 15823115 | 15822978 | ID=MS.gene72673.t1.exon1;Parent=MS.gene72673.t1 |
| chr5.4 | CDS | 15822978 | 15823115 | 15822978 | ID=cds.MS.gene72673.t1;Parent=MS.gene72673.t1 |
| chr5.4 | exon | 15822716 | 15822795 | 15822716 | ID=MS.gene72673.t1.exon2;Parent=MS.gene72673.t1 |
| chr5.4 | CDS | 15822716 | 15822795 | 15822716 | ID=cds.MS.gene72673.t1;Parent=MS.gene72673.t1 |
| chr5.4 | exon | 15822501 | 15822625 | 15822501 | ID=MS.gene72673.t1.exon3;Parent=MS.gene72673.t1 |
| chr5.4 | CDS | 15822501 | 15822625 | 15822501 | ID=cds.MS.gene72673.t1;Parent=MS.gene72673.t1 |
| chr5.4 | exon | 15822292 | 15822413 | 15822292 | ID=MS.gene72673.t1.exon4;Parent=MS.gene72673.t1 |
| chr5.4 | CDS | 15822292 | 15822413 | 15822292 | ID=cds.MS.gene72673.t1;Parent=MS.gene72673.t1 |
| chr5.4 | exon | 15821829 | 15822041 | 15821829 | ID=MS.gene72673.t1.exon5;Parent=MS.gene72673.t1 |
| chr5.4 | CDS | 15821829 | 15822041 | 15821829 | ID=cds.MS.gene72673.t1;Parent=MS.gene72673.t1 |
| chr5.4 | exon | 15821545 | 15821664 | 15821545 | ID=MS.gene72673.t1.exon6;Parent=MS.gene72673.t1 |
| chr5.4 | CDS | 15821545 | 15821664 | 15821545 | ID=cds.MS.gene72673.t1;Parent=MS.gene72673.t1 |
| chr5.4 | exon | 15821350 | 15821450 | 15821350 | ID=MS.gene72673.t1.exon7;Parent=MS.gene72673.t1 |
| chr5.4 | CDS | 15821350 | 15821450 | 15821350 | ID=cds.MS.gene72673.t1;Parent=MS.gene72673.t1 |
| chr5.4 | exon | 15821007 | 15821253 | 15821007 | ID=MS.gene72673.t1.exon8;Parent=MS.gene72673.t1 |
| chr5.4 | CDS | 15821007 | 15821253 | 15821007 | ID=cds.MS.gene72673.t1;Parent=MS.gene72673.t1 |
| Gene Sequence |
| Protein sequence |
